RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15764
         (469 letters)



>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
           {Fission yeast (Schizosaccharomyces pombe) [TaxId:
           4896]}
          Length = 505

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 2/129 (1%)

Query: 202 LVGDSLLEPFWPTGSGCARGFLSSMDACWAIR--SWAAGILNPIEVLAERESIYRILGQT 259
           L GD  +    P  +     F    D     +  + +        VL ++ +   +    
Sbjct: 17  LAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFK 76

Query: 260 TPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDDPSTLELYLKAPSTLLAPGA 319
             EN +    S          N+    +L  +   +            L      L P  
Sbjct: 77  CIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGLLGKIDITLHPEL 136

Query: 320 DQPKKRRRR 328
            +  +    
Sbjct: 137 YRLLEEDET 145


>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase
           {Bacillus sp. GL1 [TaxId: 84635]}
          Length = 377

 Score = 31.6 bits (71), Expect = 0.19
 Identities = 20/136 (14%), Positives = 35/136 (25%), Gaps = 13/136 (9%)

Query: 139 KEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAAENACRFLERNGHKL 198
            E  +E A +      E          +  G        F    +A+      +    + 
Sbjct: 60  DEQYREGAVRTVASFRERLDRFENLDHHDIG--------FLYSLSAKAQWIVEKDESARK 111

Query: 199 LMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLAERESIYRILGQ 258
           L     D L+  +     G  + +    D     R     +LN + +L          G 
Sbjct: 112 LALDAADVLMRRWRADA-GIIQAWGPKGDPENGGRIIIDCLLN-LPLLLW---AGEQTGD 166

Query: 259 TTPENLHRDHASYSLD 274
                +   HA  S  
Sbjct: 167 PEYRRVAEAHALKSRR 182


>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
           dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
           subunit {Moorella thermoacetica [TaxId: 1525]}
          Length = 729

 Score = 29.0 bits (65), Expect = 1.4
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 386 VRNLEEKFRGGVSPGRKPKDLYRAIGKIEKTDWNVKEIEKKIEE--NKYGKSTK 437
           + + ++ F G +  G++P  L+R +             E  + +    YG    
Sbjct: 1   MTDFDKIFEGAIPEGKEPVALFREV--YHGAITATSYAEILLNQAIRTYGPDHP 52


>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 93

 Score = 27.1 bits (59), Expect = 1.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 163 FAVNHYGQSDVAMFDFT 179
            ++  YG  +V  FDFT
Sbjct: 74  ISIQQYGHQEVTRFDFT 90


>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 332

 Score = 27.6 bits (61), Expect = 3.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 99  YKDDTHYFVMTAKKQSLLDKGVILNDFADTARLLSQDNIDKEALKEYARQA 149
           YK+   YFV   KK S+ +  + L++F +      ++N  +   +E  R+A
Sbjct: 270 YKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRA 320


>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
           binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 101

 Score = 25.2 bits (55), Expect = 6.6
 Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 399 PGRKPKDLYRAIGKIEKTDWNVKEIEKKIEENKYGKSTKPHSERVPKWSKQQFEDKFSAV 458
                K+    IG        + + +K+  +    +  + +   +  W K       +A 
Sbjct: 30  NHLPLKERMVEIGSRW---QRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAY 86

Query: 459 ERKLRKK 465
           +  +  K
Sbjct: 87  KEYISNK 93


>d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose)
          polymerase {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 134

 Score = 25.5 bits (56), Expect = 9.0
 Identities = 7/35 (20%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 60 KTEAEARVEEISGVAFIFNQKFFKDLYAETGIDLE 94
          +++ + RV+E+  +  I N +  +++  E   D +
Sbjct: 1  ESQLDLRVQEL--LKLICNVQTMEEMMIEMKYDTK 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,772,399
Number of extensions: 85980
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 12
Length of query: 469
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 380
Effective length of database: 1,185,626
Effective search space: 450537880
Effective search space used: 450537880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.4 bits)