Query psy15771
Match_columns 265
No_of_seqs 290 out of 1257
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 20:59:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1713|consensus 100.0 4.7E-67 1E-71 446.6 6.7 189 54-242 3-191 (191)
2 COG0852 NuoC NADH:ubiquinone o 100.0 2.5E-51 5.5E-56 356.2 10.9 165 60-228 11-176 (176)
3 PRK06074 NADH dehydrogenase su 100.0 4.4E-48 9.6E-53 339.0 20.3 177 55-242 4-180 (189)
4 PRK07785 NADH dehydrogenase su 100.0 3.4E-44 7.3E-49 323.2 16.5 152 48-205 64-217 (235)
5 PRK07735 NADH dehydrogenase su 100.0 1.8E-43 3.9E-48 337.2 13.7 144 55-201 278-425 (430)
6 CHL00012 ndhJ NADH dehydrogena 100.0 8.5E-42 1.8E-46 291.8 13.3 128 77-208 23-155 (158)
7 PRK08491 NADH dehydrogenase su 100.0 4.3E-40 9.2E-45 300.9 17.0 129 77-208 55-183 (263)
8 TIGR01961 NuoC_fam NADH (or F4 100.0 9.8E-39 2.1E-43 260.1 12.7 120 82-203 2-121 (121)
9 PRK12494 NADH dehydrogenase su 100.0 2.3E-38 4.9E-43 274.3 14.6 145 58-208 19-169 (172)
10 PRK11742 bifunctional NADH:ubi 100.0 6E-36 1.3E-40 299.0 15.7 143 60-203 3-153 (575)
11 PRK13292 trifunctional NADH de 100.0 5.5E-35 1.2E-39 299.9 16.3 147 57-204 223-375 (788)
12 PF00329 Complex1_30kDa: Respi 100.0 3.1E-35 6.8E-40 233.6 8.7 102 92-197 1-103 (103)
13 COG3262 HycE Ni,Fe-hydrogenase 99.9 6.1E-28 1.3E-32 205.3 9.9 136 60-199 11-151 (165)
14 PF10364 NKWYS: Putative capsu 47.8 8.9 0.00019 32.9 1.0 21 159-179 33-53 (141)
15 KOG2270|consensus 27.8 34 0.00074 34.6 1.6 91 107-202 144-262 (520)
16 PF09860 DUF2087: Uncharacteri 26.2 8.4 0.00018 29.1 -2.3 38 153-190 20-58 (71)
17 PRK14438 acylphosphatase; Prov 20.3 4.1E+02 0.0089 20.5 6.6 57 66-127 31-91 (91)
No 1
>KOG1713|consensus
Probab=100.00 E-value=4.7e-67 Score=446.59 Aligned_cols=189 Identities=75% Similarity=1.276 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeec
Q psy15771 54 HLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLR 133 (265)
Q Consensus 54 ~l~~~~~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~ 133 (265)
.+..||.+.+++||+.+++++..+.+++.+.+.++.+.+++.|||++..++|..+.||+|+|.+.+.++|+|+|+++|..
T Consensus 3 q~~~fg~ya~e~Lpk~~~k~~~~~~~~lei~~~~~~~i~vl~flk~h~y~r~q~~~Diagvdvp~rk~rfevvynl~svr 82 (191)
T KOG1713|consen 3 QLTLFGKYAAECLPKRVQKVQYQAGDELEILIHPDGVIPVLLFLKGHTYARFQNLYDIAGVDVPTRKNRFEVVYNLLSVR 82 (191)
T ss_pred chhHHHHHHHHhhhHHHHhhhhhcccceeeecCCCceeEEEeeeecccceeeeEeEeecCCCcccccceeEEeeeecccc
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEcCCCCCcCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCceeecCccc
Q psy15771 134 YNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEK 213 (265)
Q Consensus 134 ~n~rI~Vkv~l~e~~~vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~e~rYd~~~ 213 (265)
.|++|+|||+.++.+||||++.+|++|+|+|||+||||||.|.+|||||||||||||+||||||||||+||+|+|||++.
T Consensus 83 ~nsrirVkt~tde~tpI~sv~~vfksad~~EREv~DM~GV~f~nHPdLrRIltdygfeGhPlRKDyplsgy~Evryd~~~ 162 (191)
T KOG1713|consen 83 YNSRIRVKTYTDESTPIDSVVSVFKSADWQEREVWDMFGVTFDNHPDLRRILTDYGFEGHPLRKDYPLSGYVEVRYDDEE 162 (191)
T ss_pred ccceEEEEEecccCccCCcceEeeecCChHHHHHHhhhceeccCCcchhhhcccccccCCcccccCCCCCceEEeccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeccccchhhhhccccCCCcccCCCC
Q psy15771 214 KRVVVEPLELAQEFRKFQLETPWEQFPNF 242 (265)
Q Consensus 214 krvv~epv~l~qe~r~fd~~spwe~~~~~ 242 (265)
||||+||+||+||||+|||+||||.+|.+
T Consensus 163 krvv~ep~elaqefr~fd~~spwe~~~~~ 191 (191)
T KOG1713|consen 163 KRVVSEPIELAQEFRKFDLNSPWEQFPDF 191 (191)
T ss_pred ceeecChHHHHHHHhhcccCCchhhcCCC
Confidence 99999999999999999999999999865
No 2
>COG0852 NuoC NADH:ubiquinone oxidoreductase 27 kD subunit [Energy production and conversion]
Probab=100.00 E-value=2.5e-51 Score=356.24 Aligned_cols=165 Identities=50% Similarity=0.866 Sum_probs=150.1
Q ss_pred HHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecCCeEEE
Q psy15771 60 KYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIR 139 (265)
Q Consensus 60 ~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~n~rI~ 139 (265)
..+...+..++...... .+++++.+.++.+.+++.+||+. +|.+|+++||+||+.++++|+++|||.|+..|.+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~Lk~~---~f~~l~d~~gvD~~~~~~~FevvYhL~s~~~~~~v~ 86 (176)
T COG0852 11 ERLLAELSTVIETVVVA-EGELTLKVPPDELIDVLKALKDE---GFDHLLDLTGVDYPQETERFEVVYHLLSYKDNRRVR 86 (176)
T ss_pred Hhhhhhhhheeeeecee-eeeEEEecCHHHHHHHHHHHhhh---hHHHHHHhhcccccccCCcEEEEEEeeecCCCCEEE
Confidence 33444455555554443 56899999999999999999996 399999999999998877799999999999999999
Q ss_pred EEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCceeecCcccceEEe
Q psy15771 140 VKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVV 218 (265)
Q Consensus 140 Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~e~rYd~~~krvv~ 218 (265)
|||.++++++ |||+++|||+|||+|||+||||||.|+||||||||||+++|.|||||||||++||++++||.+.+++++
T Consensus 87 vkv~~~~~~~~vpSv~~I~~~A~W~ERE~yDmfGI~FeGHP~LrRilm~~~~~GhPLRKDfpl~~~~~~~~~~~~~~~~~ 166 (176)
T COG0852 87 VKVRLSEDDPHVPSVTDIWPAANWYEREAYDMFGIVFEGHPDLRRILMPDDWEGHPLRKDFPLRGYVEVRYDEEDKKVVY 166 (176)
T ss_pred EEEEcCCCCCcCCchHHhcccCchhhhhhheeeeeEEcCCcccccccCCCCCCCCCccCCcCCCccEEeccchhhccccc
Confidence 9999998888 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhh
Q psy15771 219 EPLELAQEFR 228 (265)
Q Consensus 219 epv~l~qe~r 228 (265)
+|+++.|++|
T Consensus 167 ~~~~~~~~~~ 176 (176)
T COG0852 167 EPVELIFERR 176 (176)
T ss_pred ccccccccCC
Confidence 9999998865
No 3
>PRK06074 NADH dehydrogenase subunit C; Provisional
Probab=100.00 E-value=4.4e-48 Score=338.97 Aligned_cols=177 Identities=51% Similarity=0.915 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecC
Q psy15771 55 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRY 134 (265)
Q Consensus 55 l~~~~~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~ 134 (265)
.+++.+.|.+.+|..+..+.. ..+++++.|+++.|.+++.+|+++..++|.+|++|||+|++..+++|+|+|||.+...
T Consensus 4 ~~~~~~~l~~~f~~~~~~~~~-~~~~~~~~v~~~~l~~v~~~L~~~~~~~f~~L~~l~avD~~~~~~~f~vvY~l~s~~~ 82 (189)
T PRK06074 4 LEELVAKLLEKLPDAIGKVTV-AFGELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGVDYPERGKRFEVVYHLLSYKH 82 (189)
T ss_pred HHHHHHHHHHHccccEEEEEE-eCCeEEEEEcHHHHHHHHHHHHhCcccCCCeEEEEEEEecCCCCCcEEEEEEEecCCC
Confidence 456677788889999888776 4789999999999999999999875478999999999999876689999999999888
Q ss_pred CeEEEEEEEcCCCCCcCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCceeecCcccc
Q psy15771 135 NSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKK 214 (265)
Q Consensus 135 n~rI~Vkv~l~e~~~vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~e~rYd~~~k 214 (265)
+.++++++.++++..+|||+++||+|+|+|||+||||||.|+||||+||||+|++|+|||||||||++||+++.|++..+
T Consensus 83 ~~~v~lk~~~~~~~~ipSIt~i~p~A~w~EREi~DmfGI~f~GhPdlrrlllpe~w~g~PLRKd~~~~~~~~~~~~~~~~ 162 (189)
T PRK06074 83 NVRLRVKVRAPEDPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDDEQK 162 (189)
T ss_pred CeEEEEEEECCCCCCCCchHHhhhccChHHHHHHHhhCceeCCCCCCccccCCCCCCCCCcccCCCCCCceEEEccchhC
Confidence 88999999998764499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccccchhhhhccccCCCcccCCCC
Q psy15771 215 RVVVEPLELAQEFRKFQLETPWEQFPNF 242 (265)
Q Consensus 215 rvv~epv~l~qe~r~fd~~spwe~~~~~ 242 (265)
+|++.||+++ ||+|.|.-
T Consensus 163 ~~~~~~~~~~----------~~~~~~~~ 180 (189)
T PRK06074 163 RVVYEPVTLS----------PWEGTPYV 180 (189)
T ss_pred eEEEeecccC----------cccCCCcc
Confidence 9999999955 99996643
No 4
>PRK07785 NADH dehydrogenase subunit C; Provisional
Probab=100.00 E-value=3.4e-44 Score=323.23 Aligned_cols=152 Identities=34% Similarity=0.565 Sum_probs=137.3
Q ss_pred hHHHHHHHHHHHHHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCC-CCcEEEE
Q psy15771 48 DEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSR-PNRFEII 126 (265)
Q Consensus 48 dev~~~~l~~~~~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r-~~rFevv 126 (265)
|+|++.+ ++.+ ..++++|..+.+. .+++++.|+++.|.+++.+||++.+++|.+|++||||||+.. +.+|+++
T Consensus 64 d~~~~~l----~~~~-~~f~~ai~~~~~~-~~~~~~~V~~e~l~~v~~~Lkd~~~l~F~~l~~vtgVDyp~~~g~~f~vv 137 (235)
T PRK07785 64 DEVADRL----EEAL-PEFADAIERVVVD-RGELTLHVRREHLVEVAQTLRDDPALRFELCLGVSGVHYPHDTGRELHAV 137 (235)
T ss_pred HHHHHHH----HHHH-HhhhhheeEEEEe-CCeEEEEEcHHHHHHHHHHHHhCccCCcceEeeEEEEecCCCCCCEEEEE
Confidence 5555554 4444 5688999888774 789999999999999999999987799999999999999864 3689999
Q ss_pred EEEeeecCCeEEEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCc
Q psy15771 127 YNLLSLRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYV 205 (265)
Q Consensus 127 Y~l~s~~~n~rI~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~ 205 (265)
|||.|+..+.+|+||+.++++++ ||||++|||+|+|+|||+||||||.|+|||||||||++++|+|||||||||+.|+-
T Consensus 138 YhL~S~~~~~~v~lkv~vp~~~p~iPSIt~I~P~A~W~EREvyDmfGI~FeGHPDLRRiLlpddw~ghPLRKDyPl~G~p 217 (235)
T PRK07785 138 YHLTSITHNRRIRLEVAVPDADPHIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYPLGGIP 217 (235)
T ss_pred EEeccCCCCeEEEEEEeccCCCCcCCcchhhcccCCchHHHHHHhcCceeCCCCCCccccCCCCCCCCCCCCCCCCCCCc
Confidence 99999999999999999987666 99999999999999999999999999999999999999999999999999999964
No 5
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=100.00 E-value=1.8e-43 Score=337.22 Aligned_cols=144 Identities=31% Similarity=0.506 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHCccceEEEEE---eeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEee
Q psy15771 55 LVDFGKYCAEILPKYIEKVQI---TSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLS 131 (265)
Q Consensus 55 l~~~~~~l~~~lp~~i~~~~~---~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s 131 (265)
+..+.+.|.+.|+..|....+ ...++++|+|.+++|..++.+|+++..++|.+|++||||||+ ++|+|+|||+|
T Consensus 278 l~~l~~~L~e~fg~~i~~~~~i~~~~~d~lti~V~~e~L~eV~~~Lrd~~~l~Fd~LsdLtGVDy~---~rFeVVYhLlS 354 (430)
T PRK07735 278 LNKYVEVIKEKLGEDVLEDSYINKLSKDVPTLVVEPEKYYEVAELLRFHEQLAFDYLSELHGTDFV---THMEVYVHLYS 354 (430)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccccCCceEEEEcHHHHHHHHHHHHhCcccCCCeeeeEEeEecC---CcEEEEEEEEe
Confidence 444455555555555544332 136799999999999999999999877899999999999997 59999999999
Q ss_pred ecCCeEEEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCC
Q psy15771 132 LRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPL 201 (265)
Q Consensus 132 ~~~n~rI~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl 201 (265)
+..|.+|+|+|.++.+++ ||||++|||+|+|||||+||||||.|+|||||||||+|++|+||||||||+.
T Consensus 355 ~~~n~rV~VKv~l~~d~P~VPSIt~I~P~AnW~EREa~DMFGI~FeGHPDLRRILLpddw~GhPLRKDF~~ 425 (430)
T PRK07735 355 YGKRQSVAVKVKLDREAPQVESVTPLWKGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDYEP 425 (430)
T ss_pred cCCCCEEEEEEecCCCCCCCCChHHhhccCChHHHHHHHHhCcccCCCCCCccCCCCCCCCCCCCCCCCCC
Confidence 998999999999987665 9999999999999999999999999999999999999999999999999985
No 6
>CHL00012 ndhJ NADH dehydrogenase subunit J
Probab=100.00 E-value=8.5e-42 Score=291.81 Aligned_cols=128 Identities=28% Similarity=0.480 Sum_probs=118.7
Q ss_pred eCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecCC----eEEEEEEEcCCCCC-cC
Q psy15771 77 SGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYN----SRIRVKTYTDELTP-LD 151 (265)
Q Consensus 77 ~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~n----~rI~Vkv~l~e~~~-vP 151 (265)
..+.+++.|++++|.+++.+||+ .+|.+|++|||+|++. +++|+++|||.|+..+ .+|+|||.++++++ +|
T Consensus 23 ~~~~~~~~V~~~~l~~v~~~Lk~---~gf~~L~~lt~vD~~~-~~~fevvYhl~s~~~~~~~~~~v~vkv~iprd~p~ip 98 (158)
T CHL00012 23 YQGIETLQIKPEDWHSIAVILYV---YGYNYLRSQCAYDVAP-GGLLASVYHLTRIQYGVDQPEEVCIKVFVPRKNPRIP 98 (158)
T ss_pred CCCCEEEEEcHHHHHHHHHHHHH---cCCCceeEEEEEEcCC-CCeEEEEEEEEecccCCCCceEEEEEEEcCCCCCCCC
Confidence 35789999999999999999996 5799999999999865 6799999999998653 68999999997776 99
Q ss_pred chhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCceee
Q psy15771 152 SANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVR 208 (265)
Q Consensus 152 SIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~e~r 208 (265)
||+++||+|+|+|||+||||||.|+||||+||||++++|+|||||||||++|++|+.
T Consensus 99 Si~~i~p~A~w~ERE~~DmfGI~F~GhPdlrrillpedw~g~PLRKD~~~~~~~e~~ 155 (158)
T CHL00012 99 SVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQ 155 (158)
T ss_pred chHHhhhCCChHHHHHHHHcCcccCCCCCCccccCCCCCCCCCCCCCCCCCCceeec
Confidence 999999999999999999999999999999999999999999999999999999875
No 7
>PRK08491 NADH dehydrogenase subunit C; Provisional
Probab=100.00 E-value=4.3e-40 Score=300.92 Aligned_cols=129 Identities=36% Similarity=0.642 Sum_probs=120.3
Q ss_pred eCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecCCeEEEEEEEcCCCCCcCchhhh
Q psy15771 77 SGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEV 156 (265)
Q Consensus 77 ~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~n~rI~Vkv~l~e~~~vPSIt~i 156 (265)
..+.+++.|++++|.+++.+|++ ++|.+|++|||+|++...++|+|+|||.|+..+.+|+|++.+++++.||||++|
T Consensus 55 ~~~~~~i~V~~e~l~~V~~~Lk~---~gf~~L~~itaVD~~~~~~~FeVvYhL~s~~~~~~V~VKv~v~~~~~IpSIt~I 131 (263)
T PRK08491 55 ELDQAVIWIKKDDNFKVLKILKH---LGYECLSEMSAIDFLAKKGGFEVFYQLLSMSKRKRVRVKCFLKEKEALQSVSFL 131 (263)
T ss_pred eCCcEEEEEcHHHHHHHHHHHHH---cCCCeEEEEEeEecCCCCCcEEEEEEEeeCCCCcEEEEEEECCCCCCCCchHHh
Confidence 46899999999999999999995 689999999999998777899999999999888899999999876679999999
Q ss_pred hhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCceee
Q psy15771 157 FKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVR 208 (265)
Q Consensus 157 ~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~e~r 208 (265)
||+|+|+|||+||||||.|+||||+||||+|++|+|||||||||+.|.---+
T Consensus 132 fpsAnW~ERE~~DMFGI~FeGHPDlRRiLLpedw~ghPLRKdfPl~g~e~a~ 183 (263)
T PRK08491 132 FKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLKSYPLKGDEFAQ 183 (263)
T ss_pred hhcCCchHHHHHHhhCceeCCCCCCcccCCCCCCCCCCcCCCCCCCCccccC
Confidence 9999999999999999999999999999999999999999999999974444
No 8
>TIGR01961 NuoC_fam NADH (or F420H2) dehydrogenase, subunit C. This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and
Probab=100.00 E-value=9.8e-39 Score=260.10 Aligned_cols=120 Identities=51% Similarity=0.915 Sum_probs=110.4
Q ss_pred EEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecCCeEEEEEEEcCCCCCcCchhhhhhcCC
Q psy15771 82 ELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAAN 161 (265)
Q Consensus 82 ~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~n~rI~Vkv~l~e~~~vPSIt~i~p~A~ 161 (265)
++.|++++|.+++..|++. +.+|.+|+++||+|++. +++|+++|||.+...+..+++++.++.++++|||+++||+|+
T Consensus 2 ~~~v~~~~l~~v~~~l~~~-~~~~~~l~~i~a~D~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ipSis~i~p~A~ 79 (121)
T TIGR01961 2 VIWIKKEQLLEVLTFLKDP-ALGFELLTDVSGVDYPK-EKRFEVVYHLLSIKKNRRIRLKVRLSEDDPVPSLTSVFPTAN 79 (121)
T ss_pred EEEEeHHHHHHHHHHHHhc-cCCCCeEeEEEEEecCC-CCeEEEEEEEEeCCCCcEEEEEEECCCCCCCCchHHhhhccc
Confidence 5788999999999999964 46888899999999874 468999999999887888999999987667999999999999
Q ss_pred chhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCC
Q psy15771 162 WYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSG 203 (265)
Q Consensus 162 W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G 203 (265)
|+|||++|||||.|+||||+||||++++|++|||||||++.|
T Consensus 80 ~~EREi~DmfGi~f~Ghpd~rr~ll~~~~~~~PLrKd~~~~~ 121 (121)
T TIGR01961 80 WYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121 (121)
T ss_pred HHHHHHHhhcCcEeCCCCCCccccCCCCCCCCCcccCcCCCC
Confidence 999999999999999999999999999999999999999987
No 9
>PRK12494 NADH dehydrogenase subunit J; Provisional
Probab=100.00 E-value=2.3e-38 Score=274.26 Aligned_cols=145 Identities=26% Similarity=0.445 Sum_probs=126.6
Q ss_pred HHHHHHHH-CccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecCC-
Q psy15771 58 FGKYCAEI-LPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYN- 135 (265)
Q Consensus 58 ~~~~l~~~-lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~n- 135 (265)
....|.+. ++..+.++. +.+...+.|+++.|.+++.+|++. +|.+|.+++|+|++. +++|.++||+.|+..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~--~~~~~~~~V~~~~l~~v~~~L~~~---g~~~l~~~~~vD~~~-~~~~~vvY~l~s~~~~~ 92 (172)
T PRK12494 19 VSQWLTENGFEHESLGPD--HLGVEIIKVEPDFLLPIATALYAY---GFNYLQCQGGYDEGP-GKELVSFYHLIKVSDNA 92 (172)
T ss_pred HHHHHHHcCCCccccccc--cCCCEEEEEcHHHHHHHHHHHHHC---CCCEEEEEEeEccCC-CCEEEEEEEEccccccC
Confidence 34456666 777766644 567889999999999999999974 688899999999864 5789999999887543
Q ss_pred ---eEEEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCceee
Q psy15771 136 ---SRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVR 208 (265)
Q Consensus 136 ---~rI~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~e~r 208 (265)
.+++|||.++.+++ +|||+++||+|+|+|||+||||||.|+||||+||||+|++|+||||||||+++||.|+.
T Consensus 93 ~~~~~v~lkv~~~~~~p~iPSIt~i~p~A~w~EREi~DmfGI~FeGHPDlRriLlpe~w~~~PLRKDf~~~~~~~~~ 169 (172)
T PRK12494 93 DKPREVRLKVFLPRDDPRVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDYIQPDFYELQ 169 (172)
T ss_pred CCceEEEEEEEccCCCCCCCchhHhhhcCChHHHHHHHhcCceeCCCCCCccccCCCCCCCCCCCCCCCCCCceeee
Confidence 57889999887654 99999999999999999999999999999999999999999999999999999999974
No 10
>PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Probab=100.00 E-value=6e-36 Score=298.97 Aligned_cols=143 Identities=35% Similarity=0.595 Sum_probs=128.3
Q ss_pred HHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCC-------CCCcEEEEEEEeee
Q psy15771 60 KYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPS-------RPNRFEIIYNLLSL 132 (265)
Q Consensus 60 ~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~-------r~~rFevvY~l~s~ 132 (265)
+.|.+.+++.+..++....+.++++|++++|.+++.+||+. +++|.+|++|||+|++. .+++|+++|||.|+
T Consensus 3 ~~l~~~f~~~~~~~~~~~~~~~~~~v~~e~l~~v~~~Lk~~-~~~f~~L~~lt~vD~~~~~~~~~~~~~~fevvYhl~s~ 81 (575)
T PRK11742 3 GELRNRFGPDAFTVQATRTGIPVVWVKREQLLEVLRFLRKL-PKPYVMLFDLHGIDERLRTHREGLPAADFTVFYHLISI 81 (575)
T ss_pred HHHHhhcccceeeeEeccCCcEEEEEcHHHHHHHHHHHhcc-CCCCceEEEEEEEecCcccccccCCCCceEEEEEEEEC
Confidence 34667788777666666678899999999999999999953 57899999999999963 24689999999999
Q ss_pred cCCeEEEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCC
Q psy15771 133 RYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSG 203 (265)
Q Consensus 133 ~~n~rI~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G 203 (265)
..+.+|+|||.++++++ +|||+++||+|+|+|||+||||||.|+||||+||||++++|+|||||||||+.+
T Consensus 82 ~~~~~v~vkv~~~~~~p~ipSi~~i~p~A~w~ERE~~d~fGi~f~ghPdlr~~l~~~d~~~~PlRKd~~~~~ 153 (575)
T PRK11742 82 ERNRDIMLKVALSENDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPARA 153 (575)
T ss_pred CCCcEEEEEEEecCCCCCCCchhhhcccCCchHHHHHHhcCceeCCCCCCcccCCCCCCCCCCCCCCCCCCc
Confidence 88999999999997775 999999999999999999999999999999999999999999999999999877
No 11
>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional
Probab=100.00 E-value=5.5e-35 Score=299.93 Aligned_cols=147 Identities=39% Similarity=0.592 Sum_probs=130.7
Q ss_pred HHHHHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCC-----CCcEEEEEEEee
Q psy15771 57 DFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSR-----PNRFEIIYNLLS 131 (265)
Q Consensus 57 ~~~~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r-----~~rFevvY~l~s 131 (265)
.+.+.|.+.++..+..... ..+++++.|++++|.+++.+||++.+++|.+|++||||||+.+ .++|+++|||.|
T Consensus 223 ~l~~~l~~~f~~~v~~~~~-~~~~~~~~v~~e~l~~v~~~Lk~~~~~~f~~L~ditaVD~~~~~~~~~~~~f~vvY~l~s 301 (788)
T PRK13292 223 GLAGELEGAFGDDVRLDEG-ATDMLTYRCPPELVPEVLRHLKKRASSPFRRLEDLAAVDESCRRDREKFPDFTVNYHLLS 301 (788)
T ss_pred HHHHHHHHHcccceEeeee-cCCcEEEEEcHHHHHHHHHHHHhCcCCCCceeeeEEEEeCCcccccCcCCcEEEEEEEEe
Confidence 3556677778876654443 3578999999999999999999987789999999999999742 469999999999
Q ss_pred ecCCeEEEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCC
Q psy15771 132 LRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGY 204 (265)
Q Consensus 132 ~~~n~rI~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~ 204 (265)
+..+.+|+||+.++++++ +|||+++||+|+|+|||+||||||.|+||||+||||+|++|++||||||||+.+.
T Consensus 302 ~~~~~~i~vkv~~~~~~p~~pSl~~i~p~A~~~ERE~~D~~Gi~f~ghPdlrr~l~~~~w~~~PLRkD~~~~~~ 375 (788)
T PRK13292 302 FDTPGHVRIKTELRGRTPELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEHPFRAT 375 (788)
T ss_pred CCCCcEEEEEEEeCCCCCCCCchHhhhccCChhHHHHHHhcCceeCCCCCCccccCCccCCCCCCCCCCCCCcc
Confidence 988899999999987765 9999999999999999999999999999999999999999999999999998763
No 12
>PF00329 Complex1_30kDa: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; InterPro: IPR001268 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. The 30 kDa subunit from NADH:ubiquinone oxidoreductase is found in both eukaryotes and prokaryotes. In mammals and in Neurospora crassa, it is nuclear-encoded as a precursor form with a transit peptide, while in Paramecium (protein P1), in the Dictyostelium discoideum (Slime mold) it is mitochondrial-encoded and it is chloroplast-encoded in various higher plants. It is also present in bacteria.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0055114 oxidation-reduction process; PDB: 2YBB_5 3IAS_E 2FUG_E 3I9V_5 3M9S_E 3IAM_5 3MCR_A.
Probab=100.00 E-value=3.1e-35 Score=233.62 Aligned_cols=102 Identities=45% Similarity=0.798 Sum_probs=84.2
Q ss_pred HHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecCCeEEEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhh
Q psy15771 92 PVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDM 170 (265)
Q Consensus 92 ~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~n~rI~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DM 170 (265)
+++++||+. +|.+|++|||+|++..+ +|+++|+|.+...+..++|++.++.+++ ||||+++||+|+|+|||+|||
T Consensus 1 e~~~~L~~~---~~~~l~~i~~~D~~~~~-~~~v~y~~~~~~~~~~~~v~~~v~~~~~~ipSit~i~p~A~~~ERE~~Dm 76 (103)
T PF00329_consen 1 EVAKFLKDE---GGARLVTITAVDYPEEG-RFEVVYHFASDGDGTLVRVKVKVPRENPEIPSITPIFPAADWYEREIYDM 76 (103)
T ss_dssp -HHHHHHHT---T--EEEEEEEEE-TTST-SEEEEEEEEETTTTEEEEEEEEE-TTS-EEE--TTT-TTHHHHHHHHHHH
T ss_pred CHHHHHHHC---CCCeEEEEEEEECCCCC-eEEEEEEEEECCCCcEEEEEEEeccCCCcccceeEEEcCceecCcHHHhh
Confidence 478999986 67899999999998654 9999999999988888999999985555 999999999999999999999
Q ss_pred cCceecCCCCCcccccCCCCCCCCCCC
Q psy15771 171 FGVYFSNHPDLRRILTDYGFEGHPFRK 197 (265)
Q Consensus 171 fGI~F~GHPDlRRILld~~f~ghPLRK 197 (265)
|||.|+||||+||||++++|++|||||
T Consensus 77 fGI~f~GhPd~rrlll~~~~~~~PLrK 103 (103)
T PF00329_consen 77 FGIRFEGHPDLRRLLLPEDWPGHPLRK 103 (103)
T ss_dssp CHHECCT-CCGS-SSSSTTSSS-TTST
T ss_pred cCCEeCCCCCCccccCCCCCCCCCCCC
Confidence 999999999999999999999999998
No 13
>COG3262 HycE Ni,Fe-hydrogenase III component G [Energy production and conversion]
Probab=99.95 E-value=6.1e-28 Score=205.34 Aligned_cols=136 Identities=27% Similarity=0.384 Sum_probs=111.3
Q ss_pred HHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecC--CeE
Q psy15771 60 KYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRY--NSR 137 (265)
Q Consensus 60 ~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~--n~r 137 (265)
..|.+.+|+.+.+......+.+++.|..+.+.+++++|+...+ .++..+.|.|....++.|.+.| |+++.. +.+
T Consensus 11 ~el~~~fpg~i~~e~~~~~~~~~~~V~~~~l~~~~e~l~~~~d---~~~~~liG~~e~~~~~~~~v~~-fLs~~~a~~~~ 86 (165)
T COG3262 11 AELNERFPGVVLDEERQTRSQLTVTVKREYLPDVVEFLYYELD---GWLSVLIGNDEDALNGHFAVYL-FLSMEQAPKCW 86 (165)
T ss_pred HHHHHhCcchhhhhhhhchhheeEEeeHhhhHHHHHHHHHhhc---ccceeeeccccccccCceeEEE-EEEEccCCCeE
Confidence 3455667764433333335789999999999999999996322 3678889999876566676544 777764 568
Q ss_pred EEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCC-C-CCCCCCC
Q psy15771 138 IRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFE-G-HPFRKDF 199 (265)
Q Consensus 138 I~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~-g-hPLRKDF 199 (265)
|.|++.++.+++ +|||++++|+|.|+||||.|||||.|.||||.|||++|++|+ | ||||||+
T Consensus 87 v~vk~~vp~dnpe~pSva~i~P~A~wfEREi~Dm~Gl~~vg~PD~RRLvLpddwPeg~yPLRkd~ 151 (165)
T COG3262 87 VIVKVSVPADNPEFPSVAPIFPAALWFEREIRDMYGLDPVGAPDPRRLVLPDDWPEGIYPLRKDA 151 (165)
T ss_pred EEEEEecCCCCCcCCccccccchhHHHHHHHHHhhCcccCCCCCcceeeccccCCcccccchhhc
Confidence 999999998887 999999999999999999999999999999999999999996 5 9999986
No 14
>PF10364 NKWYS: Putative capsular polysaccharide synthesis protein; InterPro: IPR018831 This entry contains proteins of no known function. They are found predominantly in Vibrio and cyanobacterial species and are characterised by having a NKWYS sequence motif.
Probab=47.83 E-value=8.9 Score=32.86 Aligned_cols=21 Identities=38% Similarity=0.920 Sum_probs=19.4
Q ss_pred cCCchhhhhhhhcCceecCCC
Q psy15771 159 AANWYEREIWDMFGVYFSNHP 179 (265)
Q Consensus 159 ~A~W~EREi~DMfGI~F~GHP 179 (265)
.++|+++|+-+.|||..-.||
T Consensus 33 ~~~WFD~Eik~~fGiDV~~~~ 53 (141)
T PF10364_consen 33 PLNWFDNEIKKVFGIDVYSHP 53 (141)
T ss_pred hhhHHHHHHHHhcCceeecCc
Confidence 479999999999999999996
No 15
>KOG2270|consensus
Probab=27.79 E-value=34 Score=34.59 Aligned_cols=91 Identities=22% Similarity=0.285 Sum_probs=57.0
Q ss_pred cEEEEEEEeCCCCCCcEEEEEEEeeecCCeEEEEEEE---c----CCCCCcCchhhhhh----------cCCchhhhhhh
Q psy15771 107 NLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTY---T----DELTPLDSANEVFK----------AANWYEREIWD 169 (265)
Q Consensus 107 ~L~dItavD~~~r~~rFevvY~l~s~~~n~rI~Vkv~---l----~e~~~vPSIt~i~p----------~A~W~EREi~D 169 (265)
.+.+|.|.=- .+.=.-|||... ..+....||++ + +.+.-|.+=-..-- -.-|.|.|+.-
T Consensus 144 ~i~~inGCiS---TGKEANVYHat~-~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RN 219 (520)
T KOG2270|consen 144 VIVEINGCIS---TGKEANVYHATE-EDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRN 219 (520)
T ss_pred eeeecccccc---cCccceeEeeec-CCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHH
Confidence 4666665422 133345888665 34555555543 2 23222322211111 24599999999
Q ss_pred hcCceecCCCCCcccccC-----------CCCCCCCCCCCCCCC
Q psy15771 170 MFGVYFSNHPDLRRILTD-----------YGFEGHPFRKDFPLS 202 (265)
Q Consensus 170 MfGI~F~GHPDlRRILld-----------~~f~ghPLRKDFpl~ 202 (265)
|--+.-.|-|-+.+||+- .|| ..|+.||.+|+
T Consensus 220 LkRl~~aGIP~PePIlLk~hVLVM~FlGrdgw-~aPkLKd~~ls 262 (520)
T KOG2270|consen 220 LKRLNNAGIPCPEPILLKNHVLVMEFLGRDGW-AAPKLKDASLS 262 (520)
T ss_pred HHHHHhcCCCCCCceeeecceEeeeeccCCCC-cCcccccccCC
Confidence 999999999999998873 233 27999999988
No 16
>PF09860 DUF2087: Uncharacterized protein conserved in bacteria (DUF2087); InterPro: IPR018656 This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function.
Probab=26.22 E-value=8.4 Score=29.11 Aligned_cols=38 Identities=29% Similarity=0.617 Sum_probs=32.4
Q ss_pred hhhhh-hcCCchhhhhhhhcCceecCCCCCcccccCCCC
Q psy15771 153 ANEVF-KAANWYEREIWDMFGVYFSNHPDLRRILTDYGF 190 (265)
Q Consensus 153 It~i~-p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f 190 (265)
|...| |+..+-|+|+-+...-.|..|.-+||-|-++||
T Consensus 20 l~~~f~~g~~y~E~EVN~~L~~~~~D~a~LRR~LVd~g~ 58 (71)
T PF09860_consen 20 LASRFEPGREYSEKEVNEILKRFFDDYATLRRYLVDYGL 58 (71)
T ss_pred HHHhCCCCCccCHHHHHHHHHHHcccHHHHHHHHHHcCC
Confidence 33444 677899999999999999999999999999887
No 17
>PRK14438 acylphosphatase; Provisional
Probab=20.26 E-value=4.1e+02 Score=20.47 Aligned_cols=57 Identities=9% Similarity=0.159 Sum_probs=33.2
Q ss_pred CccceEEEEEeeCCEEEEE--EcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCC--CcEEEEE
Q psy15771 66 LPKYIEKVQITSGDELELL--IIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRP--NRFEIIY 127 (265)
Q Consensus 66 lp~~i~~~~~~~~~~l~i~--V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~--~rFevvY 127 (265)
+.+|+... .++.+.+. -+++.+..++..|++.+ .+.+...+........+ ..|++.|
T Consensus 31 l~G~V~N~---~dG~Vei~~qG~~~~i~~f~~~l~~gp--~~a~V~~v~~~~~~~~~~~~~F~I~~ 91 (91)
T PRK14438 31 VSGWVKNL---PNGSVQGCFEGEETDVAALIDWCHHGP--SRARVSGVIVEREEFRGEFDDFDIRY 91 (91)
T ss_pred CEEEEEEC---CCCEEEEEEEECHHHHHHHHHHHhhCC--CCcEEEEEEEEEcCCCCCCCCEEEeC
Confidence 56666543 25544444 46788999999998643 34455555544333222 4677665
Done!