Query psy15771
Match_columns 265
No_of_seqs 290 out of 1257
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 20:59:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_5 NADH-quinone oxidoreduc 100.0 2.7E-42 9.3E-47 305.2 8.8 128 78-209 22-159 (207)
2 3mcr_A NADH dehydrogenase, sub 100.0 5.7E-36 2E-40 265.5 11.5 134 48-183 78-213 (213)
3 3gdz_A Arginyl-tRNA synthetase 29.2 90 0.0031 23.7 5.2 51 44-100 55-105 (109)
4 3ech_C 25-MER fragment of prot 15.4 29 0.00099 20.2 -0.2 12 164-175 13-24 (25)
5 2gjf_A Designed protein; proca 11.5 2.4E+02 0.0081 19.5 3.7 29 78-107 46-74 (78)
6 3j20_G 30S ribosomal protein S 10.4 77 0.0026 25.6 0.7 37 167-205 47-84 (125)
7 1lv4_A Catestatin, chromograni 9.3 89 0.003 18.5 0.5 18 222-239 4-21 (26)
8 1vjq_A Designed protein; struc 9.0 2.8E+02 0.0097 19.1 3.3 28 78-106 38-65 (79)
9 2zjr_I 50S ribosomal protein L 8.9 1.7E+02 0.0058 24.0 2.3 34 187-227 46-81 (156)
10 3a4c_A DNA replication factor 7.5 7.9E+02 0.027 19.0 7.4 42 56-99 57-99 (106)
No 1
>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_5* 2fug_5* 3iam_5* 3ias_5* 3m9s_5*
Probab=100.00 E-value=2.7e-42 Score=305.16 Aligned_cols=128 Identities=39% Similarity=0.704 Sum_probs=118.4
Q ss_pred CCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCC----CCCcEEEEEEEeeec-----CCeEEEEEEEcCCCC
Q psy15771 78 GDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPS----RPNRFEIIYNLLSLR-----YNSRIRVKTYTDELT 148 (265)
Q Consensus 78 ~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~----r~~rFevvY~l~s~~-----~n~rI~Vkv~l~e~~ 148 (265)
.+++++.|++++|.+++.+||+ ++|.+|++|||+|++. ++++|+++|||+|+. .|.+|+|||.+++++
T Consensus 22 ~g~~~v~V~~e~l~~v~~~Lk~---~gf~~L~~l~gvD~~~~~~~~~~~f~vvYhl~s~~~~~~~~~~~v~vkv~v~~~~ 98 (207)
T 3i9v_5 22 LGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVPEED 98 (207)
T ss_dssp TSCBEEECCHHHHHHHHHHHHH---TTCCCEEEEEEEECTTCSSCCSSSEEEEEEECCCTTSSSCCCCCEEEEEEECSSC
T ss_pred CCcEEEEEcHHHHHHHHHHHHH---CCCCeEEEEEeEECCccCCCCCCeEEEEEEEeeccccccCCCcEEEEEEEecCCC
Confidence 5889999999999999999997 5899999999999853 357999999999987 788999999999877
Q ss_pred C-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCceeec
Q psy15771 149 P-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRY 209 (265)
Q Consensus 149 ~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~e~rY 209 (265)
+ +|||+++||+|+|+|||+||||||.|+||||+||||+|++|+|||||||||+.+. .+.|
T Consensus 99 p~vPSit~i~p~A~w~ERE~~DmfGI~F~GhPdlRRiLl~~~w~ghPLRKDfpl~~~-p~~~ 159 (207)
T 3i9v_5 99 PRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGET-PTLF 159 (207)
T ss_dssp CBCCCCTTTCSTHHHHHHHHHHTSCCBCTTCSCCCCCSSCTTCCSCTTSTTSCCCCC-CEEC
T ss_pred CcCCchhhhhcccChhHhhhhhhcCcEeCCCCCCccccCCCCCCCCCCCCCCCCcCC-CCcC
Confidence 7 9999999999999999999999999999999999999999999999999999885 4454
No 2
>3mcr_A NADH dehydrogenase, subunit C; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.65A {Thermobifida fusca}
Probab=100.00 E-value=5.7e-36 Score=265.47 Aligned_cols=134 Identities=28% Similarity=0.492 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCC-CCCcEEEE
Q psy15771 48 DEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPS-RPNRFEII 126 (265)
Q Consensus 48 dev~~~~l~~~~~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~-r~~rFevv 126 (265)
|+|++.+.++|++.- -.+++.|.++.+. .+++++.|+++.|.+++.+||++.+++|.+|++|||+||+. ++.+|+|+
T Consensus 78 d~v~d~L~e~l~~~~-~~f~~~i~~~~~~-~~eltl~V~~e~l~~v~~~Lkd~~~~~F~~L~dltgVDy~~~~g~rFeVV 155 (213)
T 3mcr_A 78 DEVADALERSLKEIG-TPYDTAISRVVVD-RGEITFHVQREHLLDVATRLRDDPALRFELCLGVTGVHYPEDEGNELHAV 155 (213)
T ss_dssp HHHHHHHHHHHHHTT-CCHHHHEEEEEEE-TTEEEEEECGGGHHHHHHHHHHCTTTCCCEEEEEEEEECTTSTTCCEEEE
T ss_pred HHHHHHHHHHHhhcc-cccccceeEEEEE-CCEEEEEEcHHHHHHHHHHHHhCcCCCcceEEEEEeecccccCCCeeEEE
Confidence 677777766666542 1257788888875 78999999999999999999998889999999999999987 34699999
Q ss_pred EEEeeecCCeEEEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcc
Q psy15771 127 YNLLSLRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRR 183 (265)
Q Consensus 127 Y~l~s~~~n~rI~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRR 183 (265)
|||+|+..|.+|+||+.++++++ ||||++|||+|+|+|||+||||||.|+|||||||
T Consensus 156 YhL~S~~~n~rIrVKv~v~~~~P~vPSIt~I~P~AnW~ERE~~DMFGI~FeGHPDLRR 213 (213)
T 3mcr_A 156 YALRSITHNYEIRLEVSCPDSDPHIPSIVSVYPTNDWHEREAWDFFGIIFDGHPALTR 213 (213)
T ss_dssp EEEEETTTTEEEEEEEEECTTSCEEECCTTTCTTHHHHHHHHHHHHCCEEETCGGGC-
T ss_pred EeeeecCCCcEEEEEEEecCCCCccCChhhhhhccCHHHHHHHHhcCceeCCCCCCCC
Confidence 99999999999999999998777 9999999999999999999999999999999998
No 3
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=29.18 E-value=90 Score=23.71 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=35.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhC
Q psy15771 44 RKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDH 100 (265)
Q Consensus 44 ~~~~dev~~~~l~~~~~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~ 100 (265)
+++|.++++...+.+ . ....+.++.+...|.+.+.++++.|..++..+..+
T Consensus 55 ~~~P~~iA~~i~~~l----~--~~~~i~~vevagpGFINf~l~~~~~~~~l~~il~~ 105 (109)
T 3gdz_A 55 GMAPRQLAEQVLSHL----D--LNGIANKVEIAGPGFINIFLDPAFLADNVNRALQS 105 (109)
T ss_dssp TSCHHHHHHHHHHHC----C--CTTTEEEEEEETTTEEEEEECHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhc----C--cCCcEeEEEEeCCCeEEEEECHHHHHHHHHHHHhc
Confidence 344666655533332 1 12468889888678999999999999988887664
No 4
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=15.44 E-value=29 Score=20.25 Aligned_cols=12 Identities=42% Similarity=1.151 Sum_probs=8.8
Q ss_pred hhhhhhhcCcee
Q psy15771 164 EREIWDMFGVYF 175 (265)
Q Consensus 164 EREi~DMfGI~F 175 (265)
-|-+||+||-.|
T Consensus 13 rrnawdly~ehf 24 (25)
T 3ech_C 13 RRNAWDLYGEHF 24 (26)
T ss_dssp HHTHHHHHHSCC
T ss_pred HHhHHHHHHHhc
Confidence 367899988655
No 5
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=11.46 E-value=2.4e+02 Score=19.50 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=22.9
Q ss_pred CCEEEEEEcCCCHHHHHHHhhhCcCCCccc
Q psy15771 78 GDELELLIIPEGVVPVLQFLKDHHTAQFVN 107 (265)
Q Consensus 78 ~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~ 107 (265)
+..+.|.|.|+.+..+..+|+.. +..|..
T Consensus 46 ~~~vdI~V~p~~~~~f~~~L~~~-~I~y~V 74 (78)
T 2gjf_A 46 GQPVVILIPSDMVEWFLEMLKAK-GIPFTV 74 (78)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHH-TCCEEE
T ss_pred CCeEEEEECHHHHHHHHHHHHHC-CCcEEE
Confidence 44688999999999999999975 355543
No 6
>3j20_G 30S ribosomal protein S6E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=10.43 E-value=77 Score=25.56 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=18.8
Q ss_pred hhhhcCcee-cCCCCCcccccCCCCCCCCCCCCCCCCCCc
Q psy15771 167 IWDMFGVYF-SNHPDLRRILTDYGFEGHPFRKDFPLSGYV 205 (265)
Q Consensus 167 i~DMfGI~F-~GHPDlRRILld~~f~ghPLRKDFpl~G~~ 205 (265)
.-|+||+.| .|-- =+|-=--|-.|+|||.|....|-+
T Consensus 47 ~~~~~~~e~~kGy~--~~ItGG~DkqGFPMkqgV~~~~rv 84 (125)
T 3j20_G 47 LNELFGKEFPEDVK--LEIRGGTDKDGFPMRPDIHGPRRV 84 (125)
T ss_dssp SCSSSSSCSCSCCC--EEEEEEEETTCCBBCTTCCSSSEE
T ss_pred cccccccccCCCcE--EEEccCcCCCCccccCCcCCCceE
Confidence 445677777 5530 011101122478888887654433
No 7
>1lv4_A Catestatin, chromogranin A; glycoprotein, amidation, phosphorylation, signaling protein; NMR {Synthetic} SCOP: j.95.1.1
Probab=9.27 E-value=89 Score=18.53 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=11.2
Q ss_pred cchhhhhccccCCCcccC
Q psy15771 222 ELAQEFRKFQLETPWEQF 239 (265)
Q Consensus 222 ~l~qe~r~fd~~spwe~~ 239 (265)
+|+=--|.|||.+|=+..
T Consensus 4 KlsFRar~Y~Fr~Pg~~~ 21 (26)
T 1lv4_A 4 KLSFRARAYGFRGPGPQL 21 (26)
T ss_dssp CSCSCCCSSSSCSSCTTC
T ss_pred eEeeeeeecccCCCcccc
Confidence 344333579999995543
No 8
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=9.04 E-value=2.8e+02 Score=19.07 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=22.7
Q ss_pred CCEEEEEEcCCCHHHHHHHhhhCcCCCcc
Q psy15771 78 GDELELLIIPEGVVPVLQFLKDHHTAQFV 106 (265)
Q Consensus 78 ~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~ 106 (265)
+..+.|.|.|+.+..+..+|+.+ +..|.
T Consensus 38 ~~~~di~V~p~~~~~f~~~L~~~-~i~~~ 65 (79)
T 1vjq_A 38 GQPVVILIPSDMVEWFLEMLKAK-GIPFT 65 (79)
T ss_dssp TCCEEEEECGGGHHHHHHHHHHT-TCCEE
T ss_pred CCcEEEEECHHHHHHHHHHHHHC-CCcEE
Confidence 45788999999999999999986 35553
No 9
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=8.95 E-value=1.7e+02 Score=23.98 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=26.4
Q ss_pred CCCCCC--CCCCCCCCCCCCceeecCcccceEEeccccchhhh
Q psy15771 187 DYGFEG--HPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEF 227 (265)
Q Consensus 187 d~~f~g--hPLRKDFpl~G~~e~rYd~~~krvv~epv~l~qe~ 227 (265)
..+|+| +||-+-||=.||.- .+..|.+|+|.+=-
T Consensus 46 ~~gfEGGQ~Pl~rrlPK~GF~n-------~~~~~~~VNL~~L~ 81 (156)
T 2zjr_I 46 GAFFEGGRSRLIARLPKRGFNN-------VGTTYEVVKLSQLQ 81 (156)
T ss_dssp CCSCSCCSSSSTTTSCCCCCCC-------CCCCCCEECHHHHT
T ss_pred CCceEcCcCCCeEecCCCCCcC-------CceEEEeechhHHH
Confidence 467875 89999999999873 46678899988543
No 10
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*
Probab=7.51 E-value=7.9e+02 Score=19.01 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=31.2
Q ss_pred HHHHHHHHHHCccceEEEEEeeCCEEEEEEcCC-CHHHHHHHhhh
Q psy15771 56 VDFGKYCAEILPKYIEKVQITSGDELELLIIPE-GVVPVLQFLKD 99 (265)
Q Consensus 56 ~~~~~~l~~~lp~~i~~~~~~~~~~l~i~V~~d-~l~~vl~~Lk~ 99 (265)
++.-..|.+.+|+|+.-..+. ....+.++++ ++..+++.|..
T Consensus 57 E~hl~lL~ellPdWls~~~vR--~~~ylKl~k~~dl~~i~~rLe~ 99 (106)
T 3a4c_A 57 EKHLVLLAELLPDWLSLHRIR--TDTYVKLDKAVDLAGLTARLAH 99 (106)
T ss_dssp HHHHHHHHHHCTTTEEEEEET--TEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcchheeeeee--ccceeeeehhhhHHHHHHHHHH
Confidence 334456788899999887774 6677888877 88888877754
Done!