RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15771
(265 letters)
>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_5* 2fug_5* 3iam_5* 3ias_5*
3m9s_5*
Length = 207
Score = 235 bits (602), Expect = 1e-78
Identities = 59/211 (27%), Positives = 90/211 (42%), Gaps = 23/211 (10%)
Query: 56 VDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMD 115
+ + E K ++ L +++ E + K F L DI G+D
Sbjct: 1 MRLERVLEEARAKGY-PIEDNGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLD 56
Query: 116 VPS----RPNRFEIIYNLLSLRY-----NSRIRVKTYTDELTP-LDSANEVFKAANWYER 165
+ RP RF ++Y L+SL SR V+ Y E P L + +++ +AN+ ER
Sbjct: 57 YLTYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLER 116
Query: 166 EIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSG----YVEVRYDDEKKRVVV--- 218
E++D+FG+ F HPDLR+ILT EGHP RKD+PL + E RY +
Sbjct: 117 EVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGETPTLFREGRYIIPAEFRAALTG 176
Query: 219 --EPLELAQEFRKFQLETPWEQFPNFRNTPG 247
L + + + W R G
Sbjct: 177 KDPGLTFYKGGSRKGYRSLWADLKKAREVKG 207
>3mcr_A NADH dehydrogenase, subunit C; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 2.65A {Thermobifida fusca}
Length = 213
Score = 184 bits (469), Expect = 1e-58
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 5/161 (3%)
Query: 25 RLMTTAATTANTTEARPTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELL 84
R + AA + + P DEVA + L K I +V + G E+
Sbjct: 56 RHVPAAAQRPYSDPSDPRTAY-FDEVADA-LERSLKEIGTPYDTAISRVVVDRG-EITFH 112
Query: 85 IIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRP-NRFEIIYNLLSLRYNSRIRVKTY 143
+ E ++ V L+D +F + + G+ P N +Y L S+ +N IR++
Sbjct: 113 VQREHLLDVATRLRDDPALRFELCLGVTGVHYPEDEGNELHAVYALRSITHNYEIRLEVS 172
Query: 144 TDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRR 183
+ P + S V+ +W+ERE WD FG+ F HP L R
Sbjct: 173 CPDSDPHIPSIVSVYPTNDWHEREAWDFFGIIFDGHPALTR 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 3e-05
Identities = 41/221 (18%), Positives = 68/221 (30%), Gaps = 69/221 (31%)
Query: 58 FGKYC--AEILPKYIEKVQ---------ITSGDELELLIIPEGVVPVLQFLKDHHTAQFV 106
GK ++ Y KVQ + + PE V+ +LQ L +
Sbjct: 161 SGKTWVALDVCLSY--KVQCKMDFKIFWLNLKNCNS----PETVLEMLQKLLYQIDPNWT 214
Query: 107 NLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYERE 166
+ D + + R I L R ++ K Y + L L V +
Sbjct: 215 SRSDHS----SNIKLRIHSIQAELR-RL---LKSKPYENCLLVLL---NV-----Q-NAK 257
Query: 167 IWDMFGVYFSNHPDLR-RIL--------TDY---GFEGHPFRKDFP-----------LSG 203
W+ F +L +IL TD+ H L
Sbjct: 258 AWNAF--------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 204 YVEVRYDDEKKRVV-VEPLELAQ--EFRKFQLETPWEQFPN 241
Y++ R D + V+ P L+ E + L T W+ + +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKH 349
Score = 38.7 bits (89), Expect = 0.002
Identities = 27/176 (15%), Positives = 52/176 (29%), Gaps = 43/176 (24%)
Query: 43 IRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHT 102
++ ++ H I+ Y I + + LI P + HH
Sbjct: 435 LKVKLENEYALH--------RSIVDHY----NIPKTFDSDDLIPPYLDQYFYSHIG-HH- 480
Query: 103 AQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRY-NSRIRVKTYTDELTPLDSANEVFKAAN 161
+ ++ P R F +++ L R+ +IR + S +
Sbjct: 481 --------LKNIEHPERMTLFRMVF--LDFRFLEQKIRHDSTA--WNASGSILNTLQQLK 528
Query: 162 WYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVV 217
+Y+ I D N P R++ DF L E + ++
Sbjct: 529 FYKPYICD-------NDPKYERLVNAI--------LDF-LPKIEENLICSKYTDLL 568
Score = 36.8 bits (84), Expect = 0.007
Identities = 39/266 (14%), Positives = 76/266 (28%), Gaps = 91/266 (34%)
Query: 3 RNALRCS---VALRGALMS-MPS-----KHMRLMTTAATTANTTEARPTIRKPIDEVARS 53
R L + +++ + + KH+ ++ +P + R
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL----EPAEY--RK 373
Query: 54 HLVDFGKYCAEILPKYIEKVQITSGDELELL---IIPEGVVPVLQFLKDHHTAQFVNLVD 110
+ P I + L L+ +I V+ V+ L + +LV+
Sbjct: 374 MFDRLS-----VFP---PSAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKY------SLVE 418
Query: 111 IAGMDVPSRPNRFEI-IYNL-LSLR----------------YNSRIRVKTYTDELTPLDS 152
+P I I ++ L L+ YN I +D+L P
Sbjct: 419 -------KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN--IPKTFDSDDLIPPYL 469
Query: 153 ANEVF-------KAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYV 205
+ K ER +F R + D+ F +K
Sbjct: 470 DQYFYSHIGHHLKNIEHPER--MTLF----------RMVFLDFRFLE---QK-------- 506
Query: 206 EVRYDDEKKRVVVEPLELAQEFRKFQ 231
+R+D L Q+ + ++
Sbjct: 507 -IRHDSTAWNASGSILNTLQQLKFYK 531
Score = 29.4 bits (65), Expect = 1.4
Identities = 23/196 (11%), Positives = 57/196 (29%), Gaps = 63/196 (32%)
Query: 54 HLVDFG----KY-CAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNL 108
H +DF +Y +IL + + D + + + +L + ++
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFV----DNFDCKDVQDMPKSILS------KEEIDHI 54
Query: 109 VDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIW 168
+ + ++ L L + V+ + +E+
Sbjct: 55 IM-----SKDAVSGTLRLFWTL-LSKQEEM-VQKFVEEV--------------------- 86
Query: 169 DMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFR 228
LR +Y F P + + + Y +++ R+ + Q F
Sbjct: 87 ------------LR---INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN----QVFA 127
Query: 229 KFQLETPWEQFPNFRN 244
K+ + + + R
Sbjct: 128 KYNVSRL-QPYLKLRQ 142
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 3e-04
Identities = 34/194 (17%), Positives = 55/194 (28%), Gaps = 71/194 (36%)
Query: 36 TTEARPTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQ 95
++ P+ D+V L +F E
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEF------------EN----------------------C 94
Query: 96 FL--KDHHTAQFVNLVDIAGMDVPSRPNRFEII--YNLLSLRYNSRIRVKTYTDELTPLD 151
+L D H + + + E+I Y +RI K D+ +
Sbjct: 95 YLEGNDIHAL----AAKLLQENDTTLVKTKELIKNY------ITARIMAKRPFDK--KSN 142
Query: 152 SANEVFKAANWYEREIWDMFG------VYFSNHPDLRRILTDYGFEGHPFRKDF------ 199
SA +F+A ++ +FG YF +LR + Y H D
Sbjct: 143 SA--LFRAVGEGNAQLVAIFGGQGNTDDYF---EELRDLYQTY----HVLVGDLIKFSAE 193
Query: 200 PLSGYVEVRYDDEK 213
LS + D EK
Sbjct: 194 TLSELIRTTLDAEK 207
Score = 33.1 bits (75), Expect = 0.10
Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 20/94 (21%)
Query: 151 DSANEVFKAANWYEREIWDMFGVYFS------NHPDLRRILTDYGFEGHPFRKDFPLSGY 204
+A +V+ A+ + ++ +G FS N+P I G +G R++ Y
Sbjct: 1640 KAAQDVWNRADNHFKDT---YG--FSILDIVINNPVNLTIHFG-GEKGKRIREN-----Y 1688
Query: 205 VEVRYDD-EKKRVVVEPL--ELAQEFRKFQLETP 235
+ ++ ++ E + E+ + + +
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Score = 32.3 bits (73), Expect = 0.17
Identities = 54/348 (15%), Positives = 95/348 (27%), Gaps = 107/348 (30%)
Query: 2 LRNALRC--SVALRG------ALMSMPSKHMRLMTTAATTANTTEARPTIRKPIDEVARS 53
L L + L G A + L+ T N AR ++P D+ + S
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 54 HLVD------------FG------KYCAEIL------PKYIEKVQITSGDELELL----- 84
L FG Y E+ + + S + L L
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 85 ----IIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSL-RYNSRIR 139
+ +G + +L++L++ + + + P +I ++ L Y
Sbjct: 204 DAEKVFTQG-LNILEWLENPSNTPDKDYLLSIPISCP-------LIG-VIQLAHY----V 250
Query: 140 VKTYTDELTPLDSANEVFKAANWYEREI-----------WDMFGVYFSNHPDLRRILTDY 188
V TP + K A + + + W+ F F + +L
Sbjct: 251 VTAKLLGFTPGE-LRSYLKGATGHSQGLVTAVAIAETDSWESF---FVSVRKAITVLFFI 306
Query: 189 GFEGH---PFRKDFPLSGYVEVRYDDEKKR---VVVEPLELAQ---EFRKFQLETPWEQ- 238
G + P P S + ++E + + L Q K P +
Sbjct: 307 GVRCYEAYP-NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 239 ----------------FP--------NFRNTPGSSGSE--EIPLDEKK 260
P R SG + IP E+K
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Score = 31.9 bits (72), Expect = 0.27
Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 52/122 (42%)
Query: 2 LRNALRCSVALRGALMSMPSKHMRLMTTAATTANTTEARPTIRKPIDEVARSHL----VD 57
+ + + V RG M A P DE+ RS+ ++
Sbjct: 1779 IESLVEV-VFYRG----------MTMQVAV--------------PRDELGRSNYGMIAIN 1813
Query: 58 FGK----YCAEILPKYIEKVQITSGDELELLI----IP-------------EGVVPVLQF 96
G+ + E L +E+V +G +E I + + V VL F
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVE--IVNYNVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 97 LK 98
+K
Sbjct: 1872 IK 1873
Score = 30.0 bits (67), Expect = 0.97
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 5/22 (22%)
Query: 43 IRKPID-----EVARSHLVDFG 59
IR P+ + +H++DFG
Sbjct: 484 IRLPVKWETTTQFKATHILDFG 505
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation,
transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A*
2wvj_A* 2j87_A*
Length = 195
Score = 30.0 bits (68), Expect = 0.51
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 70 IEKVQITSGDELELLIIPEGVVPV--LQFLKDHHTAQFVNLVD-------IAGMDVPSRP 120
+E + ++ + V+ + QF D +F + +A +D +
Sbjct: 74 MEALPACLLRDVAQEALGVAVIGIDEGQFFPDIV--EFCEAMANAGKTVIVAALDGTFQR 131
Query: 121 NRFEIIYNLLSL 132
F I NL+ L
Sbjct: 132 KPFGAILNLVPL 143
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection,
cytoplasm, cytoskeleton, membrane, phosphoprotein,
structural protein; NMR {Mus musculus}
Length = 128
Score = 29.3 bits (65), Expect = 0.56
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 40 RPTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLI 85
RP + +D ++ +VD K ++L ++ IT+ DE L+
Sbjct: 12 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 57
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella
thermoacetica} PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A*
3rbo_A* 3sin_A* 1eg7_A
Length = 557
Score = 29.5 bits (67), Expect = 1.4
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 39 ARPTIRKPIDEVARS------HLVDFGKYCAEILPKYIEKVQ 74
A+ KP+ E+AR + +GKY A+I +++
Sbjct: 11 AQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLK 52
>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold,
structural genomics, joint center structural genomics,
JCSG; 1.50A {Sulfolobus solfataricus P2}
Length = 214
Score = 28.5 bits (63), Expect = 1.8
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 139 RVKTYTDELTPLDSANEVFKAANWYEREIWDM 170
+ DE++ + +F + +E WD
Sbjct: 174 AILYALDEVSITEDLLNIFINSVRFEIGFWDA 205
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA
replication, DNA-BI DNA-directed DNA polymerase,
exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A
{Saccharomyces cerevisiae}
Length = 919
Score = 28.7 bits (64), Expect = 2.3
Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 1/104 (0%)
Query: 140 VKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDF 199
K Y ++ F+ + + + N R++ D G G
Sbjct: 148 WKIYVTYPHMVNKLRTAFERGHLSFNSWFSNGTTTYDNIAYTLRLMVDCGIVG-MSWITL 206
Query: 200 PLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFR 243
P Y + ++ +E + E W R
Sbjct: 207 PKGKYSMIEPNNRVSSCQLEVSINYRNLIAHPAEGDWSHTAPLR 250
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Length = 292
Score = 28.0 bits (63), Expect = 3.1
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 176 SNHPDLRRILTDYG--FEGHPFRKD 198
SNHPD + +G F P D
Sbjct: 130 SNHPDFAPLAAQHGLPFRHFPITAD 154
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded
alpha/beta barrel, protein-specificity-effector complex,
DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP:
a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
Length = 714
Score = 28.0 bits (63), Expect = 3.3
Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 46/168 (27%)
Query: 89 GVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEI--------IYNLLSLRYNS---R 137
GV+PV++ L+D + N G R + I L + + +
Sbjct: 230 GVIPVMKMLED--AFSYANQ---LGA----RQGAGAVYLHAHHPDILRFLDTKRENADEK 280
Query: 138 IRVKTYTDELTPLDSANEV----FKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGH 193
IR+KT L + F+ A E +F Y D++R YG
Sbjct: 281 IRIKT-------LSLGVVIPDITFRLAK--ENAQMALFSPY-----DIQRR---YGKP-- 321
Query: 194 PFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLET--PWEQF 239
F Y E+ D ++ + + Q + Q E+ P+ F
Sbjct: 322 -FGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 368
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Length = 288
Score = 27.6 bits (62), Expect = 3.7
Identities = 8/20 (40%), Positives = 8/20 (40%), Gaps = 2/20 (10%)
Query: 176 SNHPDLRRILTDYGFEGHPF 195
SNHP D F PF
Sbjct: 124 SNHPRETFSGFD--FGDIPF 141
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis,
nucleotide-B transferase; HET: MSE; 2.01A
{Staphylococcus aureus}
Length = 219
Score = 27.7 bits (62), Expect = 3.7
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 95 QFLKDHHTAQFVNLVD------IAGMDVPSRPNRFEIIYNLLSL 132
QF D + L +AG+D+ R FE + L+++
Sbjct: 111 QFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGEPFEPMPKLMAV 154
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Length = 287
Score = 27.6 bits (62), Expect = 3.9
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 176 SNHPDLRRILTDYGFEGHPF 195
SNHP ++ G PF
Sbjct: 123 SNHPREALSVSLVG--DIPF 140
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium,
protein STRU initiative, PSI, structural genomics, DNA
synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum}
SCOP: c.37.1.24 g.39.1.14
Length = 191
Score = 27.2 bits (61), Expect = 4.7
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 95 QFLKDHHTAQFVNLVD------IAGMDVPSRPNRFEIIYNLLSL 132
QF D + + AG+D+ R F I L+++
Sbjct: 91 QFFDDEIVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAI 134
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Length = 302
Score = 27.2 bits (61), Expect = 6.0
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 176 SNHPDLRRILTDYG--FEGHPFRKD 198
SNH DLR ++ + + P
Sbjct: 140 SNHQDLRSMVEWHDIPYYHVPVDPK 164
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A
catalytic subunit; SAM dependent methyltransferase; HET:
SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37
PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Length = 334
Score = 27.1 bits (59), Expect = 6.6
Identities = 12/101 (11%), Positives = 31/101 (30%), Gaps = 10/101 (9%)
Query: 87 PEGVVPVLQFLKDH-HTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTD 145
++ + +++ D G P+ + NL R + TY
Sbjct: 209 NNESQLLINTIMSKFSHGLWISY-DPIGGSQPNDRFGAIMQSNLKESRNLEMPTLMTYNS 267
Query: 146 ELTPLDSANEVFKAANWYEREIWDMFGVYFS--NHPDLRRI 184
+ + A + DM+ ++ + + +R+
Sbjct: 268 ----KEKYASRWSA--APNVIVNDMWEIFNAQIPESERKRL 302
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain,
structural genomics, joint C structural genomics, JCSG;
HET: MSE; 2.25A {Pseudomonas putida}
Length = 286
Score = 26.8 bits (60), Expect = 8.4
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 176 SNHPDLRRILTDYG--FEGHPFRKD 198
SNHPDL + + +
Sbjct: 125 SNHPDLEPLAHWHKIPYYHFALDPK 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.405
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,338,681
Number of extensions: 272433
Number of successful extensions: 656
Number of sequences better than 10.0: 1
Number of HSP's gapped: 645
Number of HSP's successfully gapped: 34
Length of query: 265
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 173
Effective length of database: 4,133,061
Effective search space: 715019553
Effective search space used: 715019553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)