RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15771
(265 letters)
>d2fug51 d.307.1.1 (5:1-196) NADH-quinone oxidoreductase chain 5,
Nqo5 {Thermus thermophilus [TaxId: 274]}
Length = 196
Score = 120 bits (301), Expect = 3e-34
Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 17/158 (10%)
Query: 72 KVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPN----RFEIIY 127
++ L +++ E + K F L DI G+D + P+ RF ++Y
Sbjct: 16 PIEDNGLGNLWVVLPRERFKEEMAHYKAM---GFNFLADIVGLDYLTYPDPRPERFAVVY 72
Query: 128 NLLSLRY-----NSRIRVKTYTD-ELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDL 181
L+SL SR V+ Y E L + +++ +AN+ ERE++D+FG+ F HPDL
Sbjct: 73 ELVSLPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDL 132
Query: 182 RRILTDYGFEGHPFRKDFPL----SGYVEVRYDDEKKR 215
R+ILT EGHP RKD+PL + + E RY +
Sbjct: 133 RKILTPEDLEGHPLRKDYPLGETPTLFREGRYIIPAEF 170
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
sp., strain b0618 [TaxId: 1409]}
Length = 281
Score = 36.6 bits (83), Expect = 0.002
Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 11/68 (16%)
Query: 135 NSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSN-------HPDLRRILTD 187
++++T T A+++ + + ++ + + HP+ ++
Sbjct: 180 PDSVKIETANGSYT----ADKLIVSMGAWNSKLLSKLNLDIPDEHFIIDLHPEHSNVVIA 235
Query: 188 YGFEGHPF 195
GF GH F
Sbjct: 236 AGFSGHGF 243
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase
{Moorella thermoacetica [TaxId: 1525]}
Length = 549
Score = 29.4 bits (66), Expect = 0.52
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 39 ARPTIRKPIDEVAR------SHLVDFGKYCAEILPKYIEKVQ 74
A+ KP+ E+AR + +GKY A+I +++
Sbjct: 5 AQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLK 46
>d1fcda3 d.87.1.1 (A:328-401) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 74
Score = 25.5 bits (56), Expect = 1.9
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 147 LTPLDSANEVFK-----AANWYEREIWDMFG 172
+TP+D+ + V + A +WY + D FG
Sbjct: 44 VTPVDAPDWVLEREVQYAYSWYNNIVHDTFG 74
>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator
PH1161 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 215
Score = 26.7 bits (58), Expect = 3.0
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 139 RVKTYTDELTP--LDSANEVFKAANWYEREIWDM 170
R++ D D +F + +E W+M
Sbjct: 177 RLRKIIDSSGHSGYDRLRRIFITGSKFELAFWEM 210
>d1kr7a_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin)
{Milky ribbon-worm (Cerebratulus lacteus) [TaxId: 6221]}
Length = 110
Score = 25.4 bits (55), Expect = 4.4
Identities = 9/75 (12%), Positives = 17/75 (22%)
Query: 169 DMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFR 228
D + F HP+ + G + + D + R
Sbjct: 10 DFYQELFKAHPEYQNKFGFKGVALGSLKGNAAYKTQAGKTVDYINAAIGGSADAAGLASR 69
Query: 229 KFQLETPWEQFPNFR 243
+F N +
Sbjct: 70 HKGRNVGSAEFHNAK 84
>d1bvp11 a.115.1.1 (1:1-120,1:255-349) BTV vp7 {Bluetongue virus
[TaxId: 40051]}
Length = 215
Score = 25.6 bits (56), Expect = 5.8
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 9/81 (11%)
Query: 6 LRCSVALRGALMSMPSKHMRLMTTAATTANTTEARPTIRKPIDEVARSH---------LV 56
+R L+ A + + + M ++ A N R +P R+ L
Sbjct: 12 MRACATLQEARIVLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFMCLDMMLS 71
Query: 57 DFGKYCAEILPKYIEKVQITS 77
G I P Y + +
Sbjct: 72 AAGINVGPISPDYTQHMATIG 92
>d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 206
Score = 25.5 bits (55), Expect = 6.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 150 LDSANEVFKAANWYEREIWDM 170
+ A EVFK + +E WD+
Sbjct: 184 KERAREVFKEVSKFELIFWDI 204
>d2f2ga1 a.132.1.3 (A:5-219) Seed maturation protein-related
At3g16990 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 215
Score = 25.5 bits (55), Expect = 7.3
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 150 LDSANEVFKAANWYEREIWDM 170
L A +V E W+M
Sbjct: 192 LGEAEDVLVRVLELEVAFWEM 212
>d2gm8a1 a.132.1.3 (A:2-212) TenA homolog PAE0170 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 211
Score = 25.5 bits (55), Expect = 7.4
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 150 LDSANEVFKAANWYEREIWDM 170
+ FK A+ YE E W
Sbjct: 186 AEELWPYFKEASLYELEFWQA 206
>d1cz5a1 b.52.2.3 (A:1-91) N-terminal domain of VAT-N, VAT-Nn
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 91
Score = 24.3 bits (53), Expect = 8.1
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 50 VARSHLVDFGKYCAEILPKYIEKVQITSGDELEL 83
VA ++ D G + + GD +E+
Sbjct: 11 VAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEI 44
>d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator
SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId:
1313]}
Length = 217
Score = 25.1 bits (54), Expect = 8.5
Identities = 17/168 (10%), Positives = 40/168 (23%), Gaps = 32/168 (19%)
Query: 24 MRLMTTAATTANTTEARPTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELEL 83
+ ++ A+ E++ K + + F K E+ E +
Sbjct: 59 LSMLGACVAHADKLESKLRFAKQLGFLEADEDGYFQKAFKEL-----------KVAENDY 107
Query: 84 LIIPEGVVPVLQFLKDHHTAQFVNLVDIAGM----------------DVPSRPNRFEIIY 127
L + V + + + M +P E I
Sbjct: 108 LEVTLHPVTKAFQDLMYSAVASSDYAHLLVMLVIAEGLYLDWGSKDLALPEVYIHSEWIN 167
Query: 128 NLLSLRYNSRIR-----VKTYTDELTPLDSANEVFKAANWYEREIWDM 170
+ ++ + L + + A E +D+
Sbjct: 168 LHRGPFFAEWVQFLVDELNRVGKNREDLTELQQRWNQAVALELAFFDI 215
>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 328
Score = 25.0 bits (54), Expect = 9.4
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 93 VLQFLKDHHTAQFVNLVDIAGMDVPSRPNRF 123
+L+FL + Q VNL G D R
Sbjct: 88 ILEFLVANEKVQVVNLG--CGSD--LRMLPL 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.405
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,059,210
Number of extensions: 52666
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 23
Length of query: 265
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,254,276
Effective search space: 227023956
Effective search space used: 227023956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)