BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15773
(73 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DCT2|NDUS3_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial OS=Mus musculus GN=Ndufs3 PE=1 SV=2
Length = 263
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 35/44 (79%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
+++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R P S
Sbjct: 207 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPPES 250
>sp|P23709|NDUS3_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial OS=Bos taurus GN=NDUFS3 PE=1 SV=1
Length = 266
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 35/44 (79%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
+++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R P S
Sbjct: 210 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPPES 253
>sp|O75489|NDUS3_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial OS=Homo sapiens GN=NDUFS3 PE=1 SV=1
Length = 264
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 35/44 (79%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
+++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R P S
Sbjct: 208 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQPPES 251
>sp|Q0MQG6|NDUS3_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial OS=Pongo pygmaeus GN=NDUFS3 PE=2 SV=1
Length = 263
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 35/44 (79%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
+++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R P S
Sbjct: 207 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQPPES 250
>sp|Q0MQG8|NDUS3_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial OS=Pan troglodytes GN=NDUFS3 PE=2 SV=1
Length = 264
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 35/44 (79%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
+++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R P S
Sbjct: 208 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQPPES 251
>sp|Q0MQG7|NDUS3_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS3 PE=2
SV=1
Length = 263
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 35/44 (79%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
+++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R P S
Sbjct: 207 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQPPES 250
>sp|P86217|NDUS3_MESAU NADH dehydrogenase [ubiquinone] iron-sulfur protein 3,
mitochondrial (Fragments) OS=Mesocricetus auratus
GN=NDUFS3 PE=1 SV=1
Length = 94
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 30/36 (83%)
Query: 16 RYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFR 51
+YDDE KRVV EP+ELAQEFRKF L +PWE FP +R
Sbjct: 59 KYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYR 94
>sp|O21271|NDUS3_RECAM NADH-ubiquinone oxidoreductase subunit 9 OS=Reclinomonas americana
GN=NAD9 PE=3 SV=1
Length = 204
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQ 46
++VRYDDE+KRVV E LE+ QEFR F +PWEQ
Sbjct: 159 VEVRYDDEQKRVVTESLEMTQEFRSFNFTSPWEQ 192
>sp|P34944|NDUS3_MARPO NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Marchantia
polymorpha GN=NAD9 PE=3 SV=2
Length = 195
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQ 46
++VRYDD +KRVV EP+E+ QEFR F +PWEQ
Sbjct: 152 VEVRYDDSEKRVVSEPIEMTQEFRYFDFASPWEQ 185
>sp|A8I3Y9|NUOC_AZOC5 NADH-quinone oxidoreductase subunit C OS=Azorhizobium caulinodans
(strain ATCC 43989 / DSM 5975 / ORS 571) GN=nuoC PE=3
SV=1
Length = 211
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYDDE KRVV EP+ LAQEFR F +PWE
Sbjct: 154 VEVRYDDELKRVVYEPVRLAQEFRNFDFLSPWE 186
>sp|Q37383|NDUS3_ACACA NADH-ubiquinone oxidoreductase subunit 9 OS=Acanthamoeba
castellanii GN=NAD9 PE=3 SV=1
Length = 195
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
Query: 11 TG-LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQ 46
TG +++RYDDEK +V EPLEL+QE+R F +PWE+
Sbjct: 157 TGYIEIRYDDEKANIVYEPLELSQEYRLFNFTSPWEK 193
>sp|Q95748|NDUS3_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 3
OS=Arabidopsis thaliana GN=NAD9 PE=1 SV=2
Length = 190
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQ 46
++VRYDD +KRVV EP+E+ QEFR F +PWEQ
Sbjct: 153 VQVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186
>sp|Q98KQ7|NUOC_RHILO NADH-quinone oxidoreductase subunit C OS=Rhizobium loti (strain
MAFF303099) GN=nuoC PE=3 SV=1
Length = 201
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYDDE KRV+ EP+EL QEFR F +PWE
Sbjct: 154 VEVRYDDEAKRVIYEPVELKQEFRNFDFLSPWE 186
>sp|Q33994|NDUS3_BETTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta
trigyna GN=NAD9 PE=2 SV=1
Length = 192
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQ 46
++VRYDD +KRVV EP+E+ QEFR F +PWEQ
Sbjct: 153 VEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186
>sp|P80261|NDUS3_SOLTU NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Solanum
tuberosum GN=NAD9 PE=1 SV=3
Length = 190
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQ 46
++VRYDD +KRVV EP+E+ QEFR F +PWEQ
Sbjct: 153 VEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186
>sp|Q35322|NDUS3_ORYSJ NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Oryza
sativa subsp. japonica GN=NAD9 PE=2 SV=2
Length = 190
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQ 46
++VRYDD +KRVV EP+E+ QEFR F +PWEQ
Sbjct: 153 VEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186
>sp|Q37622|NDUS3_PROWI NADH-ubiquinone oxidoreductase subunit 9 OS=Prototheca wickerhamii
GN=NAD9 PE=3 SV=1
Length = 192
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQ 46
++VRYDD +KRV +E +E +QEFR F E+PWEQ
Sbjct: 151 VEVRYDDSEKRVCIESVEYSQEFRYFDFESPWEQ 184
>sp|Q34011|NDUS3_PATWE NADH dehydrogenase [ubiquinone] iron-sulfur protein 3
OS=Patellifolia webbiana GN=NAD9 PE=2 SV=2
Length = 192
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQ 46
++VRYDD +KRVV EP+E+ QEFR F +PWEQ
Sbjct: 153 VEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186
>sp|Q37787|NDUS3_BETVU NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta
vulgaris GN=NAD9 PE=2 SV=3
Length = 192
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQ 46
++VRYDD +KRVV EP+E+ QEFR F +PWEQ
Sbjct: 153 VEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQ 186
>sp|B3Q7N4|NUOC_RHOPT NADH-quinone oxidoreductase subunit C OS=Rhodopseudomonas palustris
(strain TIE-1) GN=nuoC PE=3 SV=1
Length = 204
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYDD++KRV+ EP+ L QEFRKF +PWE
Sbjct: 155 VEVRYDDDQKRVIYEPVRLNQEFRKFDFLSPWE 187
>sp|Q6N5M4|NUOC_RHOPA NADH-quinone oxidoreductase subunit C OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=nuoC PE=3 SV=1
Length = 204
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYDD++KRV+ EP+ L QEFRKF +PWE
Sbjct: 155 VEVRYDDDQKRVIYEPVRLNQEFRKFDFLSPWE 187
>sp|A7IPA5|NUOC_XANP2 NADH-quinone oxidoreductase subunit C OS=Xanthobacter autotrophicus
(strain ATCC BAA-1158 / Py2) GN=nuoC PE=3 SV=1
Length = 209
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYDDE+KRVV EP+ L QEFR F +PWE
Sbjct: 154 VEVRYDDEQKRVVYEPVRLPQEFRNFDFLSPWE 186
>sp|B5ZYL4|NUOC_RHILW NADH-quinone oxidoreductase subunit C OS=Rhizobium leguminosarum
bv. trifolii (strain WSM2304) GN=nuoC PE=3 SV=1
Length = 200
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYDD KRVV EP+EL QEFR F +PWE
Sbjct: 154 VEVRYDDAAKRVVYEPVELKQEFRNFDFMSPWE 186
>sp|Q215I2|NUOC_RHOPB NADH-quinone oxidoreductase subunit C OS=Rhodopseudomonas palustris
(strain BisB18) GN=nuoC PE=3 SV=1
Length = 199
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYDD++KRVV EP+ L QEFRKF +PWE
Sbjct: 153 VEVRYDDDEKRVVYEPVRLNQEFRKFDFLSPWE 185
>sp|A7HY47|NUOC_PARL1 NADH-quinone oxidoreductase subunit C OS=Parvibaculum
lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
GN=nuoC PE=3 SV=1
Length = 200
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYDD++KRVV EP++L QEFR F +PWE
Sbjct: 154 VEVRYDDDEKRVVYEPVKLVQEFRNFDFMSPWE 186
>sp|Q2K9T3|NUOC_RHIEC NADH-quinone oxidoreductase subunit C OS=Rhizobium etli (strain CFN
42 / ATCC 51251) GN=nuoC PE=3 SV=1
Length = 200
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYDD KRVV EP+EL QEFR F +PWE
Sbjct: 154 VEVRYDDAAKRVVYEPVELKQEFRNFDFMSPWE 186
>sp|Q1MIL3|NUOC_RHIL3 NADH-quinone oxidoreductase subunit C OS=Rhizobium leguminosarum
bv. viciae (strain 3841) GN=nuoC PE=3 SV=1
Length = 200
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYDD KRVV EP+EL QEFR F +PWE
Sbjct: 154 VEVRYDDAAKRVVYEPVELKQEFRNFDFMSPWE 186
>sp|B3PVZ9|NUOC1_RHIE6 NADH-quinone oxidoreductase subunit C 1 OS=Rhizobium etli (strain
CIAT 652) GN=nuoC1 PE=3 SV=1
Length = 200
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYDD KRVV EP+EL QEFR F +PWE
Sbjct: 154 VEVRYDDAAKRVVYEPVELKQEFRNFDFMSPWE 186
>sp|A6U7W5|NUOC_SINMW NADH-quinone oxidoreductase subunit C OS=Sinorhizobium medicae
(strain WSM419) GN=nuoC PE=3 SV=1
Length = 201
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYD+E KRVV EP+EL QEFR F +PWE
Sbjct: 154 VEVRYDNEAKRVVYEPVELKQEFRNFDFLSPWE 186
>sp|B9JD44|NUOC_AGRRK NADH-quinone oxidoreductase subunit C OS=Agrobacterium radiobacter
(strain K84 / ATCC BAA-868) GN=nuoC PE=3 SV=1
Length = 200
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYDD KRVV EP+EL QEFR F +PWE
Sbjct: 154 VEVRYDDAAKRVVYEPVELKQEFRNFDFLSPWE 186
>sp|O68854|NUOC1_RHIME NADH-quinone oxidoreductase subunit C 1 OS=Rhizobium meliloti
(strain 1021) GN=nuoC1 PE=3 SV=2
Length = 201
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYD+E KRVV EP+EL QEFR F +PWE
Sbjct: 154 VEVRYDNEAKRVVYEPVELKQEFRNFDFLSPWE 186
>sp|A8LIT7|NUOC_DINSH NADH-quinone oxidoreductase subunit C OS=Dinoroseobacter shibae
(strain DFL 12) GN=nuoC PE=3 SV=1
Length = 215
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 15 VRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
VRYD+EKKRVV EP+ L QE+R+F +PWE
Sbjct: 165 VRYDEEKKRVVYEPVNLVQEYRQFDFMSPWE 195
>sp|B9JVE7|NUOC_AGRVS NADH-quinone oxidoreductase subunit C OS=Agrobacterium vitis
(strain S4 / ATCC BAA-846) GN=nuoC PE=3 SV=1
Length = 200
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYDD KRVV EP+EL QEFR F +PWE
Sbjct: 154 VEVRYDDTVKRVVYEPVELKQEFRSFDFLSPWE 186
>sp|Q163Q2|NUOC_ROSDO NADH-quinone oxidoreductase subunit C OS=Roseobacter denitrificans
(strain ATCC 33942 / OCh 114) GN=nuoC PE=3 SV=1
Length = 199
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 13/56 (23%)
Query: 15 VRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEI-PLDEKKE 69
VRYD+ +KRVV EP+ L QE+R+F +PWE G+E I P DEKKE
Sbjct: 156 VRYDEAQKRVVYEPVSLVQEYRQFDFMSPWE------------GAEYILPGDEKKE 199
>sp|Q2W3I6|NUOC_MAGSA NADH-quinone oxidoreductase subunit C OS=Magnetospirillum
magneticum (strain AMB-1 / ATCC 700264) GN=nuoC PE=3
SV=1
Length = 199
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
+++RYDDE KRVV EP++L Q+FR F +PWE
Sbjct: 155 VEMRYDDETKRVVYEPVKLTQDFRSFDFLSPWE 187
>sp|A6X1N2|NUOC_OCHA4 NADH-quinone oxidoreductase subunit C OS=Ochrobactrum anthropi
(strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=nuoC PE=3
SV=1
Length = 202
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRY+DE KRVV EP++L QEFR F +PWE
Sbjct: 155 VEVRYNDELKRVVYEPVQLRQEFRNFDFLSPWE 187
>sp|Q8G1B5|NUOC_BRUSU NADH-quinone oxidoreductase subunit C OS=Brucella suis biovar 1
(strain 1330) GN=nuoC PE=3 SV=1
Length = 202
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRY+DE KRVV EP++L QEFR F +PWE
Sbjct: 155 VEVRYNDELKRVVYEPVQLRQEFRNFDFLSPWE 187
>sp|B0CLD1|NUOC_BRUSI NADH-quinone oxidoreductase subunit C OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=nuoC PE=3 SV=1
Length = 202
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRY+DE KRVV EP++L QEFR F +PWE
Sbjct: 155 VEVRYNDELKRVVYEPVQLRQEFRNFDFLSPWE 187
>sp|A5VPY5|NUOC_BRUO2 NADH-quinone oxidoreductase subunit C OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=nuoC PE=3 SV=1
Length = 202
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRY+DE KRVV EP++L QEFR F +PWE
Sbjct: 155 VEVRYNDELKRVVYEPVQLRQEFRNFDFLSPWE 187
>sp|Q8YGK2|NUOC_BRUME NADH-quinone oxidoreductase subunit C OS=Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=nuoC
PE=3 SV=1
Length = 202
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRY+DE KRVV EP++L QEFR F +PWE
Sbjct: 155 VEVRYNDELKRVVYEPVQLRQEFRNFDFLSPWE 187
>sp|C0RIE1|NUOC_BRUMB NADH-quinone oxidoreductase subunit C OS=Brucella melitensis
biotype 2 (strain ATCC 23457) GN=nuoC PE=3 SV=1
Length = 202
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRY+DE KRVV EP++L QEFR F +PWE
Sbjct: 155 VEVRYNDELKRVVYEPVQLRQEFRNFDFLSPWE 187
>sp|A9MAI1|NUOC_BRUC2 NADH-quinone oxidoreductase subunit C OS=Brucella canis (strain
ATCC 23365 / NCTC 10854) GN=nuoC PE=3 SV=1
Length = 202
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRY+DE KRVV EP++L QEFR F +PWE
Sbjct: 155 VEVRYNDELKRVVYEPVQLRQEFRNFDFLSPWE 187
>sp|Q57DU9|NUOC_BRUAB NADH-quinone oxidoreductase subunit C OS=Brucella abortus biovar 1
(strain 9-941) GN=nuoC PE=3 SV=1
Length = 202
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRY+DE KRVV EP++L QEFR F +PWE
Sbjct: 155 VEVRYNDELKRVVYEPVQLRQEFRNFDFLSPWE 187
>sp|Q2YNC7|NUOC_BRUA2 NADH-quinone oxidoreductase subunit C OS=Brucella abortus (strain
2308) GN=nuoC PE=3 SV=1
Length = 202
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRY+DE KRVV EP++L QEFR F +PWE
Sbjct: 155 VEVRYNDELKRVVYEPVQLRQEFRNFDFLSPWE 187
>sp|B2S545|NUOC_BRUA1 NADH-quinone oxidoreductase subunit C OS=Brucella abortus (strain
S19) GN=nuoC PE=3 SV=1
Length = 202
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRY+DE KRVV EP++L QEFR F +PWE
Sbjct: 155 VEVRYNDELKRVVYEPVQLRQEFRNFDFLSPWE 187
>sp|Q0C1E5|NUOC_HYPNA NADH-quinone oxidoreductase subunit C OS=Hyphomonas neptunium
(strain ATCC 15444) GN=nuoC PE=3 SV=1
Length = 202
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 11/56 (19%)
Query: 15 VRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEIPLDEKKEE 70
VRYDD +KRV+ EP++LAQE+R F +PWE + IP DEK +E
Sbjct: 157 VRYDDLEKRVIYEPVKLAQEYRNFDFLSPWEGM-----------TTVIPGDEKAKE 201
>sp|Q2RU38|NUOC_RHORT NADH-quinone oxidoreductase subunit C OS=Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255) GN=nuoC PE=3 SV=1
Length = 213
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 11 TGLK-VRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
TG K VRYD+E KRVV EP+ L+Q+FR F +PWE
Sbjct: 158 TGYKEVRYDEELKRVVYEPVRLSQDFRTFDFLSPWE 193
>sp|Q28T74|NUOC_JANSC NADH-quinone oxidoreductase subunit C OS=Jannaschia sp. (strain
CCS1) GN=nuoC PE=3 SV=1
Length = 207
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 15 VRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
VRYD+E KRVV EP+ L QE+R+F +PWE
Sbjct: 157 VRYDEELKRVVYEPVSLVQEYRQFDFMSPWE 187
>sp|A9CJB1|NUOC_AGRT5 NADH-quinone oxidoreductase subunit C OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=nuoC PE=3 SV=1
Length = 200
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
++VRYDD KRV+ EP+EL QEFR F +PWE
Sbjct: 154 VEVRYDDVLKRVLYEPVELKQEFRNFDFLSPWE 186
>sp|Q5LPR5|NUOC_RUEPO NADH-quinone oxidoreductase subunit C OS=Ruegeria pomeroyi (strain
ATCC 700808 / DSM 15171 / DSS-3) GN=nuoC PE=3 SV=1
Length = 200
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 13/56 (23%)
Query: 15 VRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEI-PLDEKKE 69
VRYD+ +KRVV EP+ L QE+R+F +PWE G++ I P DEKKE
Sbjct: 156 VRYDEAEKRVVYEPVSLVQEYRQFDFMSPWE------------GADYILPGDEKKE 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,576,043
Number of Sequences: 539616
Number of extensions: 1112503
Number of successful extensions: 2186
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2091
Number of HSP's gapped (non-prelim): 95
length of query: 73
length of database: 191,569,459
effective HSP length: 45
effective length of query: 28
effective length of database: 167,286,739
effective search space: 4684028692
effective search space used: 4684028692
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)