Query psy15773
Match_columns 73
No_of_seqs 106 out of 307
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 21:01:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1713|consensus 99.8 4.3E-22 9.3E-27 145.6 2.3 44 7-50 148-191 (191)
2 PRK06074 NADH dehydrogenase su 97.8 1.9E-05 4.1E-10 56.4 2.6 34 7-50 147-180 (189)
3 COG0852 NuoC NADH:ubiquinone o 97.5 3.6E-05 7.8E-10 55.2 0.7 30 7-36 147-176 (176)
4 PRK10779 zinc metallopeptidase 45.0 13 0.00028 29.2 1.4 35 6-46 62-96 (449)
5 PF10901 DUF2690: Protein of u 39.6 19 0.0004 23.9 1.3 13 10-22 30-42 (103)
6 PHA02668 GM-CSF/IL-2 inhibitio 37.3 35 0.00075 26.8 2.7 34 3-48 90-124 (265)
7 COG4741 Predicted secreted end 34.7 16 0.00034 27.2 0.4 24 4-32 96-119 (175)
8 PHA02670 ORF112 putative chemo 32.7 42 0.00091 26.6 2.5 37 2-48 103-139 (287)
9 PRK08577 hypothetical protein; 32.3 45 0.00098 21.9 2.3 23 11-33 31-53 (136)
10 PF14243 DUF4343: Domain of un 30.8 18 0.00039 24.3 0.2 26 17-42 32-57 (130)
11 PF02852 Pyr_redox_dim: Pyridi 28.5 57 0.0012 20.1 2.2 17 9-25 47-63 (110)
12 PRK13859 type IV secretion sys 25.4 28 0.00061 21.6 0.3 8 3-10 25-32 (55)
13 PF06448 DUF1081: Domain of Un 24.4 35 0.00076 22.6 0.7 36 3-48 35-70 (118)
14 COG3917 NahD 2-hydroxychromene 23.3 30 0.00065 26.3 0.2 12 37-48 13-24 (203)
15 COG3807 Uncharacterized protei 23.0 33 0.00071 25.5 0.4 32 7-38 31-76 (171)
16 PF11838 ERAP1_C: ERAP1-like C 20.9 62 0.0013 22.8 1.4 20 9-28 8-27 (324)
17 TIGR00054 RIP metalloprotease 20.8 48 0.001 25.9 0.9 36 6-46 60-96 (420)
No 1
>KOG1713|consensus
Probab=99.84 E-value=4.3e-22 Score=145.62 Aligned_cols=44 Identities=68% Similarity=1.156 Sum_probs=42.9
Q ss_pred cccCceeEEEEcCCCCcEEeccccchHhhhccccCCCcccCCCC
Q psy15773 7 QDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNF 50 (73)
Q Consensus 7 FPLtGyvEvRYDd~~KRVVyEPVeLsQefR~Fdf~SPWe~~~~~ 50 (73)
||||||+|||||++.||||+|||||+||||+||++||||++|.|
T Consensus 148 yplsgy~Evryd~~~krvv~ep~elaqefr~fd~~spwe~~~~~ 191 (191)
T KOG1713|consen 148 YPLSGYVEVRYDDEEKRVVSEPIELAQEFRKFDLNSPWEQFPDF 191 (191)
T ss_pred CCCCCceEEeccchhceeecChHHHHHHHhhcccCCchhhcCCC
Confidence 89999999999999999999999999999999999999999875
No 2
>PRK06074 NADH dehydrogenase subunit C; Provisional
Probab=97.76 E-value=1.9e-05 Score=56.37 Aligned_cols=34 Identities=53% Similarity=0.855 Sum_probs=31.0
Q ss_pred cccCceeEEEEcCCCCcEEeccccchHhhhccccCCCcccCCCC
Q psy15773 7 QDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNF 50 (73)
Q Consensus 7 FPLtGyvEvRYDd~~KRVVyEPVeLsQefR~Fdf~SPWe~~~~~ 50 (73)
|||+||+++.||+..++||+.||+++ ||++-|.-
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 180 (189)
T PRK06074 147 FPLTGYVEVRYDDEQKRVVYEPVTLS----------PWEGTPYV 180 (189)
T ss_pred CCCCCceEEEccchhCeEEEeecccC----------cccCCCcc
Confidence 89999999999999999999999966 99987643
No 3
>COG0852 NuoC NADH:ubiquinone oxidoreductase 27 kD subunit [Energy production and conversion]
Probab=97.47 E-value=3.6e-05 Score=55.23 Aligned_cols=30 Identities=50% Similarity=0.646 Sum_probs=28.4
Q ss_pred cccCceeEEEEcCCCCcEEeccccchHhhh
Q psy15773 7 QDLYTGLKVRYDDEKKRVVVEPLELAQEFR 36 (73)
Q Consensus 7 FPLtGyvEvRYDd~~KRVVyEPVeLsQefR 36 (73)
|||+||++++||.+.++++|+|+++.+++|
T Consensus 147 fpl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (176)
T COG0852 147 FPLRGYVEVRYDEEDKKVVYEPVELIFERR 176 (176)
T ss_pred cCCCccEEeccchhhcccccccccccccCC
Confidence 899999999999999999999999998765
No 4
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=44.96 E-value=13 Score=29.18 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=22.3
Q ss_pred ccccCceeEEEEcCCCCcEEeccccchHhhhccccCCCccc
Q psy15773 6 VQDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQ 46 (73)
Q Consensus 6 ~FPLtGyvEvRYDd~~KRVVyEPVeLsQefR~Fdf~SPWe~ 46 (73)
.+||-|||.|- |++. ++++=..+=|.|+-.++|..
T Consensus 62 ~iPlGGyVk~~-~e~~-----~~~~~~~~~~~f~~k~~~~R 96 (449)
T PRK10779 62 LIPLGGYVKML-DERV-----EPVAPELRHHAFNNKTVGQR 96 (449)
T ss_pred EEcCCCeeecC-CCCC-----CcCChhhhhhhhccCCHHHh
Confidence 58999999984 5433 22222223468888899953
No 5
>PF10901 DUF2690: Protein of unknown function (DUF2690); InterPro: IPR021224 This bacterial family of proteins has no known function.
Probab=39.62 E-value=19 Score=23.86 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=10.4
Q ss_pred CceeEEEEcCCCC
Q psy15773 10 YTGLKVRYDDEKK 22 (73)
Q Consensus 10 tGyvEvRYDd~~K 22 (73)
.|+|||||...=+
T Consensus 30 ~~~VELRyS~~C~ 42 (103)
T PF10901_consen 30 GGTVELRYSPTCG 42 (103)
T ss_pred ceEEEEEECChhc
Confidence 5899999998643
No 6
>PHA02668 GM-CSF/IL-2 inhibition factor; Provisional
Probab=37.29 E-value=35 Score=26.81 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=23.9
Q ss_pred CCCccccCceeEEEEcCCCCcEEeccccchHhhhccccCCCcc-cCC
Q psy15773 3 EGPVQDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE-QFP 48 (73)
Q Consensus 3 ~~~~FPLtGyvEvRYDd~~KRVVyEPVeLsQefR~Fdf~SPWe-~~~ 48 (73)
+|- ||++ |++|-||. .+|-+|- +-+.-+||. +.+
T Consensus 90 ~gv-ip~s-yigv~fnp-~~~ymyV---------nvsSw~PW~~~~t 124 (265)
T PHA02668 90 CGF-FDMR-QVEVTYDT-ARRQMYV---------YLDTWDPWVLDYP 124 (265)
T ss_pred cce-eeee-eEeeeecC-CcceEEE---------EecccCcccccCC
Confidence 444 8876 89999999 6666663 335678998 544
No 7
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=34.70 E-value=16 Score=27.17 Aligned_cols=24 Identities=17% Similarity=0.519 Sum_probs=21.9
Q ss_pred CCccccCceeEEEEcCCCCcEEeccccch
Q psy15773 4 GPVQDLYTGLKVRYDDEKKRVVVEPLELA 32 (73)
Q Consensus 4 ~~~FPLtGyvEvRYDd~~KRVVyEPVeLs 32 (73)
.|.|| +.+||+..-|-+=.||++-
T Consensus 96 aPffp-----~f~ynPkD~RfIGTPvD~i 119 (175)
T COG4741 96 APFFP-----EFKYNPKDARFIGTPVDFI 119 (175)
T ss_pred ccccc-----CCCcCCccceeeCCCceEE
Confidence 58899 8999999999999999875
No 8
>PHA02670 ORF112 putative chemokine-binding protein; Provisional
Probab=32.65 E-value=42 Score=26.63 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=27.0
Q ss_pred CCCCccccCceeEEEEcCCCCcEEeccccchHhhhccccCCCcccCC
Q psy15773 2 AEGPVQDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFP 48 (73)
Q Consensus 2 ~~~~~FPLtGyvEvRYDd~~KRVVyEPVeLsQefR~Fdf~SPWe~~~ 48 (73)
.+|--+|++ |+.|-||....+-||-.| +..+||.+..
T Consensus 103 gegv~ip~s-yIgvgfnp~~~~YvYvnv---------sSwsPW~q~T 139 (287)
T PHA02670 103 GEEVSIPMS-YIGVGFNPSLADYVYVNV---------SSWTPWEQST 139 (287)
T ss_pred ecceEeeee-eeeeecCccccceEEEec---------cccCcccccC
Confidence 355557876 899999998888777544 3568999544
No 9
>PRK08577 hypothetical protein; Provisional
Probab=32.35 E-value=45 Score=21.90 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCcEEeccccchH
Q psy15773 11 TGLKVRYDDEKKRVVVEPLELAQ 33 (73)
Q Consensus 11 GyvEvRYDd~~KRVVyEPVeLsQ 33 (73)
.++++..|...++|+.+|+....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~ 53 (136)
T PRK08577 31 MYVLLIADTDKKEIHLEPIALPG 53 (136)
T ss_pred CEEEEEEECCCCEEEEEEcCCCC
Confidence 57899999999999999996554
No 10
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=30.82 E-value=18 Score=24.27 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=21.9
Q ss_pred EcCCCCcEEeccccchHhhhccccCC
Q psy15773 17 YDDEKKRVVVEPLELAQEFRKFQLET 42 (73)
Q Consensus 17 YDd~~KRVVyEPVeLsQefR~Fdf~S 42 (73)
.|+...-++.|+|++..|||-|-..-
T Consensus 32 ~~~~~~V~vSe~v~~~~E~R~fi~~g 57 (130)
T PF14243_consen 32 LDPDTPVLVSEVVEIESEWRCFIVDG 57 (130)
T ss_pred CCCCceEEEeceEeeeeeEEEEEECC
Confidence 56778889999999999999886643
No 11
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=28.53 E-value=57 Score=20.12 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=15.0
Q ss_pred cCceeEEEEcCCCCcEE
Q psy15773 9 LYTGLKVRYDDEKKRVV 25 (73)
Q Consensus 9 LtGyvEvRYDd~~KRVV 25 (73)
..||+.+-||.+.+||+
T Consensus 47 ~~g~~Kli~d~~t~~Il 63 (110)
T PF02852_consen 47 TEGFVKLIFDKKTGRIL 63 (110)
T ss_dssp TEEEEEEEEETTTTBEE
T ss_pred cceeeEEEEEeecccee
Confidence 46999999999999886
No 12
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=25.41 E-value=28 Score=21.64 Aligned_cols=8 Identities=38% Similarity=0.742 Sum_probs=5.9
Q ss_pred CCCccccC
Q psy15773 3 EGPVQDLY 10 (73)
Q Consensus 3 ~~~~FPLt 10 (73)
-||+|||.
T Consensus 25 kGpiFpLN 32 (55)
T PRK13859 25 KGPIFPLN 32 (55)
T ss_pred cCCccccc
Confidence 48888873
No 13
>PF06448 DUF1081: Domain of Unknown Function (DUF1081); InterPro: IPR009454 This entry represents a conserved open beta-sheet domain found in several lipid transport proteins, including vitellogenin and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: heavy chain lipovitellin (lipovitellin-1), phosvitin, light chain lipovitellin (lipovitellin-2), and a von Willebrand factor type D domain (YGP40) [, ]. In vitellinogen, this domain is often found as part of the lipovitellin-1 peptide product. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport
Probab=24.42 E-value=35 Score=22.62 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=23.6
Q ss_pred CCCccccCceeEEEEcCCCCcEEeccccchHhhhccccCCCcccCC
Q psy15773 3 EGPVQDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFP 48 (73)
Q Consensus 3 ~~~~FPLtGyvEvRYDd~~KRVVyEPVeLsQefR~Fdf~SPWe~~~ 48 (73)
..|.|||+|=.-+ .|..||.+ +-|.|.|.--|+..+
T Consensus 35 ~~p~fPL~Gp~~f-------~l~Lektd---~~~~Y~~~~~~~~~~ 70 (118)
T PF06448_consen 35 SAPYFPLSGPAKF-------SLELEKTD---SVKGYHFKATYELQR 70 (118)
T ss_pred cccccccCCCEEE-------EEEEEeCC---CeeEEEEEEEEcccc
Confidence 3588999996543 35555555 466777777776655
No 14
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.27 E-value=30 Score=26.26 Aligned_cols=12 Identities=17% Similarity=0.606 Sum_probs=9.4
Q ss_pred ccccCCCcccCC
Q psy15773 37 KFQLETPWEQFP 48 (73)
Q Consensus 37 ~Fdf~SPWe~~~ 48 (73)
+|||.|||.-..
T Consensus 13 ~fdf~SP~ayL~ 24 (203)
T COG3917 13 YFDFSSPYAYLA 24 (203)
T ss_pred EEecCCchHHhh
Confidence 689999997543
No 15
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.02 E-value=33 Score=25.46 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=25.8
Q ss_pred cccCceeEEEEcCCCCcE----------Ee----ccccchHhhhcc
Q psy15773 7 QDLYTGLKVRYDDEKKRV----------VV----EPLELAQEFRKF 38 (73)
Q Consensus 7 FPLtGyvEvRYDd~~KRV----------Vy----EPVeLsQefR~F 38 (73)
.||--||-+.|..-+-|| +| .|||+.|||++.
T Consensus 31 LplPRfVSlKs~~VN~R~GP~~~yav~W~y~k~GlPVEIvqEy~~W 76 (171)
T COG3807 31 LPLPRFVSLKSAEVNARVGPGTDYAVEWVYLKKGLPVEIVQEYDNW 76 (171)
T ss_pred CcccceEEecccceecccCCCccceeEEeeeccCCceehhhhhhhh
Confidence 688888888888777665 23 799999999875
No 16
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=20.93 E-value=62 Score=22.79 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=14.8
Q ss_pred cCceeEEEEcCCCCcEEecc
Q psy15773 9 LYTGLKVRYDDEKKRVVVEP 28 (73)
Q Consensus 9 LtGyvEvRYDd~~KRVVyEP 28 (73)
-+||+-|+||+...+-+.+.
T Consensus 8 ~~GyyRV~Yd~~~~~~l~~~ 27 (324)
T PF11838_consen 8 QTGYYRVNYDEENWDALIKQ 27 (324)
T ss_dssp GSSSSEEEECTTHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHH
Confidence 37999999998876555443
No 17
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=20.82 E-value=48 Score=25.90 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=22.5
Q ss_pred ccccCceeEEE-EcCCCCcEEeccccchHhhhccccCCCccc
Q psy15773 6 VQDLYTGLKVR-YDDEKKRVVVEPLELAQEFRKFQLETPWEQ 46 (73)
Q Consensus 6 ~FPLtGyvEvR-YDd~~KRVVyEPVeLsQefR~Fdf~SPWe~ 46 (73)
.+||-||+++. -|++...+ .| .++=|.|+-.++|..
T Consensus 60 ~~plGg~v~~~g~~~~~~~~--~~---~~~~~~f~~~~~~~r 96 (420)
T TIGR00054 60 LIPLGGYVKMKGLDKEMEVK--PP---ETDGDLFNNKSVFQK 96 (420)
T ss_pred EecCcceEeeccCCcccccC--Cc---chhhhhhccCCHHHH
Confidence 58999999996 34433211 11 223468888899954
Done!