Query psy15773
Match_columns 73
No_of_seqs 106 out of 307
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 21:01:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pft_A TFIIB, PFTFIIBN; N-term 57.9 10 0.00034 20.4 2.8 41 7-47 8-48 (50)
2 1hyw_A GPW, head-TO-tail joini 23.2 50 0.0017 19.7 2.1 21 11-33 22-42 (68)
3 2aj6_A Hypothetical protein MW 13.1 1.3E+02 0.0045 17.3 2.3 29 9-37 76-104 (159)
4 2otr_A Hypothetical protein HP 12.3 1.4E+02 0.0046 16.9 2.1 18 10-28 54-71 (98)
5 2f20_A Conserved hypothetical 12.2 94 0.0032 21.9 1.6 15 6-20 104-118 (240)
6 1hkq_A REPA, replication prote 11.9 79 0.0027 19.7 1.1 28 10-40 104-131 (132)
7 1slu_A Ecotin; serine protease 11.4 92 0.0032 21.0 1.3 30 13-42 105-134 (142)
8 2a6s_A Toxin YOEB; YEFM, antit 11.1 1.5E+02 0.0051 16.1 2.0 18 9-27 52-69 (84)
9 2icu_A Hypothetical protein YE 10.7 89 0.003 21.8 1.1 17 6-22 104-120 (229)
10 3k8r_A Uncharacterized protein 10.6 1.8E+02 0.0062 18.8 2.5 23 12-34 27-58 (124)
No 1
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=57.90 E-value=10 Score=20.42 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=28.0
Q ss_pred cccCceeEEEEcCCCCcEEeccccchHhhhccccCCCcccC
Q psy15773 7 QDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQF 47 (73)
Q Consensus 7 FPLtGyvEvRYDd~~KRVVyEPVeLsQefR~Fdf~SPWe~~ 47 (73)
=|-.|-..++||.....+|...--|.-+=+..+-.+.|..+
T Consensus 8 CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f 48 (50)
T 1pft_A 8 CPACESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF 48 (50)
T ss_dssp CTTTSCCCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSCC
T ss_pred CcCCCCcceEEcCCCCeEECcccCCcccccccccCCccccc
Confidence 47777778999999999998766555444444544555433
No 2
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=23.24 E-value=50 Score=19.71 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=16.9
Q ss_pred ceeEEEEcCCCCcEEeccccchH
Q psy15773 11 TGLKVRYDDEKKRVVVEPLELAQ 33 (73)
Q Consensus 11 GyvEvRYDd~~KRVVyEPVeLsQ 33 (73)
|=++|+|| .++|-|...++.+
T Consensus 22 ~~vsV~yd--gr~V~Y~~asi~~ 42 (68)
T 1hyw_A 22 RVATVQKD--GRRVEFTATSVSD 42 (68)
T ss_dssp CCEEEECS--SCEEEECTTTHHH
T ss_pred ceEEEEEC--CEEEEEecCCHHH
Confidence 45899998 8899999777664
No 3
>2aj6_A Hypothetical protein MW0638; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.63A {Staphylococcus aureus subsp} SCOP: d.108.1.1
Probab=13.15 E-value=1.3e+02 Score=17.31 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=20.5
Q ss_pred cCceeEEEEcCCCCcEEeccccchHhhhc
Q psy15773 9 LYTGLKVRYDDEKKRVVVEPLELAQEFRK 37 (73)
Q Consensus 9 LtGyvEvRYDd~~KRVVyEPVeLsQefR~ 37 (73)
+.||+-+.++.....+...-+-+.++||.
T Consensus 76 ~vG~~~~~~~~~~~~~~i~~~~V~p~~rg 104 (159)
T 2aj6_A 76 LIAFIWGHFSNEKSMVNIELLYVEPQFRK 104 (159)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEECGGGTT
T ss_pred EEEEEEEEeecCCCEEEEEEEEECHHHcc
Confidence 46888888876666666656777777763
No 4
>2otr_A Hypothetical protein HP0892; anti-parallel beta sheet, structural genomics, unknown funct; NMR {Helicobacter pylori}
Probab=12.28 E-value=1.4e+02 Score=16.89 Aligned_cols=18 Identities=6% Similarity=-0.151 Sum_probs=13.5
Q ss_pred CceeEEEEcCCCCcEEecc
Q psy15773 10 YTGLKVRYDDEKKRVVVEP 28 (73)
Q Consensus 10 tGyvEvRYDd~~KRVVyEP 28 (73)
.|+.++|-+ ..-||||+-
T Consensus 54 ~g~~~~ri~-~~yriiY~i 71 (98)
T 2otr_A 54 KDFRECHLK-PDLLLVYQI 71 (98)
T ss_dssp CSCEEEEEE-TTEEEEEEE
T ss_pred CCeEEEEEC-CCEEEEEEE
Confidence 468899885 358899874
No 5
>2f20_A Conserved hypothetical protein, with conserved domain; Q8A8E9_bactin, NESG, BTR8, structural genomics, PSI; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.303.1.1
Probab=12.17 E-value=94 Score=21.85 Aligned_cols=15 Identities=7% Similarity=-0.048 Sum_probs=12.9
Q ss_pred ccccCceeEEEEcCC
Q psy15773 6 VQDLYTGLKVRYDDE 20 (73)
Q Consensus 6 ~FPLtGyvEvRYDd~ 20 (73)
+.|.+||+|=.++..
T Consensus 104 lVPa~gfyEw~~~~g 118 (240)
T 2f20_A 104 IVPSTGYFEWRHEGA 118 (240)
T ss_dssp EEEESEEEEEEEETT
T ss_pred EEEeceeEEcccCCC
Confidence 689999999988764
No 6
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=11.94 E-value=79 Score=19.68 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=16.5
Q ss_pred CceeEEEEcCCCCcEEeccccchHhhhcccc
Q psy15773 10 YTGLKVRYDDEKKRVVVEPLELAQEFRKFQL 40 (73)
Q Consensus 10 tGyvEvRYDd~~KRVVyEPVeLsQefR~Fdf 40 (73)
.|.+++++++.-+.-+ ++|...|..|.+
T Consensus 104 ~G~v~i~fs~~i~Pyl---~~Lk~~FT~y~L 131 (132)
T 1hkq_A 104 QGCVELGFSPTIIPHL---TMLHKEFTSYQL 131 (132)
T ss_dssp TTEEEEEECTTTTTTH---HHHHHHHHHTCC
T ss_pred ceEEEEEECHHHHHHH---HHHhcCcEEEEe
Confidence 4677777776655444 345566665543
No 7
>1slu_A Ecotin; serine protease, inhibitor, complex, metal binding sites, PR engineering, protease-substrate interactions; 1.80A {Escherichia coli} SCOP: b.16.1.1 PDB: 1slv_A 1slw_A 1slx_A 1n8o_E 1azz_C* 1ecz_A* 1ecy_A 1xx9_C* 1p0s_E* 1id5_I* 1ezu_A 1xxf_C 1ezs_A 1xxd_C 1ifg_A 1fi8_C 1fi8_D
Probab=11.35 E-value=92 Score=21.00 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=25.6
Q ss_pred eEEEEcCCCCcEEeccccchHhhhccccCC
Q psy15773 13 LKVRYDDEKKRVVVEPLELAQEFRKFQLET 42 (73)
Q Consensus 13 vEvRYDd~~KRVVyEPVeLsQefR~Fdf~S 42 (73)
.=+||+...=-|||-|=...-.||.+.-.+
T Consensus 105 ~~irYnSklPiVVY~P~~~evryRiW~~~~ 134 (142)
T 1slu_A 105 GMLRYNSKLPIVVYTPDNVDVKYRVWKAEE 134 (142)
T ss_dssp GEEECCTTSCEEEEEETTCEEEEEEEECCS
T ss_pred ceEecCCCCCEEEEcCCCcEEEEEEeecch
Confidence 357999999999999999999999776555
No 8
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=11.14 E-value=1.5e+02 Score=16.07 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=12.9
Q ss_pred cCceeEEEEcCCCCcEEec
Q psy15773 9 LYTGLKVRYDDEKKRVVVE 27 (73)
Q Consensus 9 LtGyvEvRYDd~~KRVVyE 27 (73)
|+|+.++|-+ ..-||||+
T Consensus 52 ~~g~~~~ri~-~~yRiiY~ 69 (84)
T 2a6s_A 52 LSGFWSRRIT-EEHRLVYA 69 (84)
T ss_dssp GTTCEEEESS-SSCEEEEE
T ss_pred CCCEEEEEEC-CCeEEEEE
Confidence 4567888864 34799997
No 9
>2icu_A Hypothetical protein YEDK; structural genomics, PSI, protein structure initiative, southeast collaboratory for structura genomics, secsg, riken; 1.60A {Escherichia coli}
Probab=10.73 E-value=89 Score=21.76 Aligned_cols=17 Identities=12% Similarity=0.006 Sum_probs=10.0
Q ss_pred ccccCceeEEEEcCCCC
Q psy15773 6 VQDLYTGLKVRYDDEKK 22 (73)
Q Consensus 6 ~FPLtGyvEvRYDd~~K 22 (73)
+.|.+||+|=..+..+|
T Consensus 104 lVPa~gfyEw~~~~~~k 120 (229)
T 2icu_A 104 ICFADGWFEWKKEGDKK 120 (229)
T ss_dssp EEEESEEEEEC------
T ss_pred EEEcceEEEcccCCCCc
Confidence 68999999987765443
No 10
>3k8r_A Uncharacterized protein; unknown function, structural genomics, joint center for STRU genomics, JCSG; 2.75A {Rhodospirillum rubrum atcc 11170}
Probab=10.62 E-value=1.8e+02 Score=18.82 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=14.2
Q ss_pred eeEEEEcCC---------CCcEEeccccchHh
Q psy15773 12 GLKVRYDDE---------KKRVVVEPLELAQE 34 (73)
Q Consensus 12 yvEvRYDd~---------~KRVVyEPVeLsQe 34 (73)
-+.|+||+. ..|.+..|+..-|.
T Consensus 27 a~~V~fd~~~~~l~v~L~dGr~l~~Pl~~~p~ 58 (124)
T 3k8r_A 27 AAKARYDRSSARVIVDLENGCTFAFPPRLAQG 58 (124)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEECGGGSTT
T ss_pred eEEEEEecCCCEEEEEECCCCEEEecHHHhHH
Confidence 367999984 45555556655443
Done!