Query psy15773
Match_columns 73
No_of_seqs 106 out of 307
Neff 3.0
Searched_HMMs 13730
Date Fri Aug 16 21:01:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15773.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15773hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g8fa1 b.122.1.3 (A:2-168) AT 26.8 5.5 0.0004 25.4 -0.3 13 1-13 47-59 (167)
2 d2f20a1 d.303.1.1 (A:2-232) Hy 24.9 15 0.0011 24.0 1.6 18 6-23 103-120 (231)
3 d3lada3 d.87.1.1 (A:349-472) D 23.6 27 0.0019 20.2 2.5 17 9-25 50-66 (124)
4 d1lnza1 b.117.1.1 (A:1-157) Ob 23.0 32 0.0023 21.4 2.9 39 15-53 94-142 (157)
5 d1by2a_ d.170.1.1 (A:) M2BP {H 22.3 15 0.0011 20.8 1.1 19 7-26 14-32 (116)
6 d1dxla3 d.87.1.1 (A:348-470) D 21.3 30 0.0022 20.0 2.4 16 10-25 51-66 (123)
7 d1eeja2 d.17.3.1 (A:1-60) Disu 21.2 27 0.002 18.7 2.0 16 8-26 23-38 (60)
8 d1mo9a3 d.87.1.1 (A:384-523) N 20.6 31 0.0022 20.2 2.4 17 10-26 67-83 (140)
9 d1xdia2 d.87.1.1 (A:349-466) D 20.5 32 0.0023 19.8 2.4 16 10-25 51-66 (118)
10 d2aj6a1 d.108.1.1 (A:1-118) Hy 19.7 34 0.0025 18.3 2.3 29 9-37 64-92 (118)
No 1
>d1g8fa1 b.122.1.3 (A:2-168) ATP sulfurylase N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.75 E-value=5.5 Score=25.44 Aligned_cols=13 Identities=23% Similarity=0.171 Sum_probs=10.5
Q ss_pred CCCCCccccCcee
Q psy15773 1 MAEGPVQDLYTGL 13 (73)
Q Consensus 1 ~~~~~~FPLtGyv 13 (73)
|+.|...||+||.
T Consensus 47 l~~G~fsPL~GFM 59 (167)
T d1g8fa1 47 ILNGGFSPLTGFL 59 (167)
T ss_dssp HHTTTTTTCCEEC
T ss_pred HhcCCCCCccccc
Confidence 4678888999985
No 2
>d2f20a1 d.303.1.1 (A:2-232) Hypothetical protein BT1218 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=24.89 E-value=15 Score=23.98 Aligned_cols=18 Identities=11% Similarity=-0.010 Sum_probs=14.6
Q ss_pred ccccCceeEEEEcCCCCc
Q psy15773 6 VQDLYTGLKVRYDDEKKR 23 (73)
Q Consensus 6 ~FPLtGyvEvRYDd~~KR 23 (73)
++|.+||+|-+....+|.
T Consensus 103 lIPa~GfyEW~~~~~~k~ 120 (231)
T d2f20a1 103 IVPSTGYFEWRHEGANKI 120 (231)
T ss_dssp EEEESEEEEEEEETTEEE
T ss_pred EEEeeeEEeecccCCccc
Confidence 689999999998766554
No 3
>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}
Probab=23.57 E-value=27 Score=20.17 Aligned_cols=17 Identities=29% Similarity=0.200 Sum_probs=14.9
Q ss_pred cCceeEEEEcCCCCcEE
Q psy15773 9 LYTGLKVRYDDEKKRVV 25 (73)
Q Consensus 9 LtGyvEvRYDd~~KRVV 25 (73)
-.||+.+-+|.+.+||+
T Consensus 50 ~~G~vKlv~d~~t~~IL 66 (124)
T d3lada3 50 TAGFVKVIADAKTDRVL 66 (124)
T ss_dssp CCCEEEEEEETTTCBEE
T ss_pred CCeEEEEEEECCCCEEE
Confidence 46999999999999985
No 4
>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=23.02 E-value=32 Score=21.44 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=31.2
Q ss_pred EEEcCCCCcEEeccccchHhh---------h-ccccCCCcccCCCCCCC
Q psy15773 15 VRYDDEKKRVVVEPLELAQEF---------R-KFQLETPWEQFPNFRNT 53 (73)
Q Consensus 15 vRYDd~~KRVVyEPVeLsQef---------R-~Fdf~SPWe~~~~~~~~ 53 (73)
+-||+++++||.+-.+--|++ + |..|.|.+.+.|.+...
T Consensus 94 ~V~~~~~~~~i~dl~~~g~~~lvakGG~GG~GN~~f~ss~n~~P~~~~~ 142 (157)
T d1lnza1 94 VVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPANPAPQLSEN 142 (157)
T ss_dssp EEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGSCBTTBSSCCCCCC
T ss_pred EEecCCCcEEEEeeccCCceEEEEecCCCCCcccccccccCCCCccccC
Confidence 458888899999888877776 3 88999999988877653
No 5
>d1by2a_ d.170.1.1 (A:) M2BP {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.31 E-value=15 Score=20.84 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=13.5
Q ss_pred cccCceeEEEEcCCCCcEEe
Q psy15773 7 QDLYTGLKVRYDDEKKRVVV 26 (73)
Q Consensus 7 FPLtGyvEvRYDd~~KRVVy 26 (73)
-|..|.|||.|+.. ..-|+
T Consensus 14 ~~~eGrVEV~~~g~-Wg~VC 32 (116)
T d1by2a_ 14 ATNQGRVEIFYRGQ-WGTVC 32 (116)
T ss_dssp STTEEEEEEEETTE-EEEEB
T ss_pred CCCceEEEEEECCE-EEeEE
Confidence 47889999988754 44443
No 6
>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=21.25 E-value=30 Score=19.96 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=14.5
Q ss_pred CceeEEEEcCCCCcEE
Q psy15773 10 YTGLKVRYDDEKKRVV 25 (73)
Q Consensus 10 tGyvEvRYDd~~KRVV 25 (73)
.|++.|-+|.+.+||+
T Consensus 51 ~G~~Klv~d~~~~~il 66 (123)
T d1dxla3 51 EGLVKIIAEKETDKIL 66 (123)
T ss_dssp CCEEEEEEETTTCBEE
T ss_pred cceEEEEEECCCCEEE
Confidence 5999999999999886
No 7
>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.16 E-value=27 Score=18.69 Aligned_cols=16 Identities=13% Similarity=-0.051 Sum_probs=12.8
Q ss_pred ccCceeEEEEcCCCCcEEe
Q psy15773 8 DLYTGLKVRYDDEKKRVVV 26 (73)
Q Consensus 8 PLtGyvEvRYDd~~KRVVy 26 (73)
|+.|++||..|. .|+|
T Consensus 23 pi~GlyeV~~~~---~i~Y 38 (60)
T d1eeja2 23 PVAGMKTVLTNS---GVLY 38 (60)
T ss_dssp SSTTEEEEEETT---EEEE
T ss_pred CCCCeEEEEECC---EEEE
Confidence 899999999865 2666
No 8
>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}
Probab=20.63 E-value=31 Score=20.15 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=14.7
Q ss_pred CceeEEEEcCCCCcEEe
Q psy15773 10 YTGLKVRYDDEKKRVVV 26 (73)
Q Consensus 10 tGyvEvRYDd~~KRVVy 26 (73)
.|++.|.+|.+..+|+=
T Consensus 67 ~G~vKlv~d~~t~~IlG 83 (140)
T d1mo9a3 67 SGFQKIVIDAKTRKVLG 83 (140)
T ss_dssp GCEEEEEEETTTCBEEE
T ss_pred CceEEEEEecCCCcEEE
Confidence 58999999999998863
No 9
>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.53 E-value=32 Score=19.75 Aligned_cols=16 Identities=13% Similarity=-0.018 Sum_probs=14.3
Q ss_pred CceeEEEEcCCCCcEE
Q psy15773 10 YTGLKVRYDDEKKRVV 25 (73)
Q Consensus 10 tGyvEvRYDd~~KRVV 25 (73)
.||+.|-+|.+.+||+
T Consensus 51 ~G~vKlv~d~~~~~il 66 (118)
T d1xdia2 51 HGFVKIFCRRSTGVVI 66 (118)
T ss_dssp SCEEEEEEETTTCBEE
T ss_pred hhheEEEEecCCCceE
Confidence 5899999999999886
No 10
>d2aj6a1 d.108.1.1 (A:1-118) Hypothetical protein MW0638 {Staphylococcus aureus [TaxId: 1280]}
Probab=19.67 E-value=34 Score=18.26 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=21.9
Q ss_pred cCceeEEEEcCCCCcEEeccccchHhhhc
Q psy15773 9 LYTGLKVRYDDEKKRVVVEPLELAQEFRK 37 (73)
Q Consensus 9 LtGyvEvRYDd~~KRVVyEPVeLsQefR~ 37 (73)
+.||.-+.+....+.+...-+-+..+||.
T Consensus 64 ivG~~~~~~~~~~~~~~i~~l~V~~~~Rg 92 (118)
T d2aj6a1 64 LIAFIWGHFSNEKSMVNIELLYVEPQFRK 92 (118)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEECGGGTT
T ss_pred EEEEeeeccccCCCeEEEEEEEEchhhcc
Confidence 46888888877777777777778888873
Done!