RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15773
(73 letters)
>gnl|CDD|235691 PRK06074, PRK06074, NADH dehydrogenase subunit C; Provisional.
Length = 189
Score = 30.3 bits (69), Expect = 0.040
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 10/32 (31%)
Query: 14 KVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
+VRYDDE+KRVV EP+ L +PWE
Sbjct: 154 EVRYDDEQKRVVYEPVTL----------SPWE 175
>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated.
Length = 386
Score = 28.0 bits (63), Expect = 0.35
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 14/45 (31%)
Query: 11 TGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFR-NTP 54
TG KV Y V P L+ EFRK Q+ F NTP
Sbjct: 241 TGWKVGY-------CVAPAALSAEFRKVH------QYNTFTVNTP 272
>gnl|CDD|227586 COG5261, IQG1, Protein involved in regulation of cellular
morphogenesis/cytokinesis [Cell division and chromosome
partitioning / Signal transduction mechanisms].
Length = 1054
Score = 26.4 bits (58), Expect = 1.2
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 3 EGPVQDLYTGLKVRYDD----EKKRVVVEPL--ELAQEFRKFQLETPWEQFPNFRNTPGS 56
+ P++DL LK + + E L L + + P + PN R+ P
Sbjct: 776 DDPIRDLKQQLKRTRVYIIYVDAGTNLFEQLLRLLPSDEPATRN--PLDLNPNIRDDPSV 833
Query: 57 SGSEEIPLDEKKE 69
S + + L + K
Sbjct: 834 SSLKSMSLMKLKI 846
>gnl|CDD|132622 TIGR03583, EF_0837, probable amidohydrolase EF_0837/AHA_3915.
Members of this family of relatively uncommon proteins
are found in both Gram-positive (e.g. Enterococcus
faecalis) and Gram-negative (e.g. Aeromonas hydrophila)
bacteria, as part of a cluster of conserved proteins.
These proteins resemble aminohydrolases (see pfam01979),
including dihydroorotases. The function is unknown
[Hypothetical proteins, Conserved].
Length = 365
Score = 25.8 bits (57), Expect = 1.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 8 DLYTGLKVRYDDEKKRVV----VEPLELAQEFRKFQLETP 43
D GLK R K VV +EPLE+A++ ++ LE P
Sbjct: 144 DFIVGLKARM---SKSVVGDNGIEPLEIAKQIQQENLELP 180
>gnl|CDD|223921 COG0852, NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit [Energy
production and conversion].
Length = 176
Score = 25.7 bits (57), Expect = 2.0
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 14 KVRYDDEKKRVVVEPLELAQEFR 36
+VRYD+E K+VV EP+EL E R
Sbjct: 154 EVRYDEEDKKVVYEPVELIFERR 176
>gnl|CDD|131701 TIGR02653, Lon_rel_chp, conserved hypothetical protein. This model
describes a protein family of unknown function, about
690 residues in length, in which some members show
C-terminal sequence similarity to pfam05362, which is
the Lon protease C-terminal proteolytic domain, from
MEROPS family S16. However, the annotated catalytic
sites of E. coli Lon protease are not conserved in
members of this family. Members have a motif
GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif
GxxGxGK[ST] [Hypothetical proteins, Conserved].
Length = 675
Score = 25.6 bits (56), Expect = 2.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 4 GPVQDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNF 50
PVQDL L++ D KRV++ P+ A++ P E F F
Sbjct: 615 NPVQDLAGSLQLAMDSGAKRVLI-PMSSARDI----PTVPAELFSKF 656
>gnl|CDD|182787 PRK10861, PRK10861, signal peptidase I; Provisional.
Length = 324
Score = 25.0 bits (55), Expect = 3.5
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 15/70 (21%)
Query: 12 GLKVRYDDEKKRVVVEP---------LELAQEFRKFQLETPWEQFPNFRNTPG---SSGS 59
G KV YD K V ++P L + + P + F G +SG
Sbjct: 153 GDKVTYDPVSKEVTIQPGCSSGQACENALPVTYSNVE---PSDFVQTFSRRNGGEATSGF 209
Query: 60 EEIPLDEKKE 69
++PL+E KE
Sbjct: 210 FQVPLNETKE 219
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 24.3 bits (53), Expect = 6.6
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 19 DEKKRVVVEPLELAQEFRKFQLETPWEQFPNFR 51
D++ R + P++L + KF +T Q +F+
Sbjct: 94 DQEARKELTPIKLRAKAAKFAKKTVDTQRESFK 126
>gnl|CDD|233034 TIGR00584, mug, mismatch-specific thymine-DNA glycosylate (mug).
All proteins in this family for whcih functions are
known are G-T or G-U mismatch glycosylases that
function in base excision repair. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University). Used 2pf model [DNA
metabolism, DNA replication, recombination, and
repair].
Length = 328
Score = 24.2 bits (52), Expect = 7.9
Identities = 15/60 (25%), Positives = 23/60 (38%)
Query: 14 KVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEIPLDEKKEEEKK 73
+ D +V E E + K + P E+ P FR S P++ KK + K
Sbjct: 23 QRSADAPNMALVEEQEETSGVPAKAPTQEPSEEAPKFRKRKPRSNEPYRPVEPKKPSDSK 82
>gnl|CDD|184861 PRK14859, tatA, twin arginine translocase protein A; Provisional.
Length = 63
Score = 23.1 bits (50), Expect = 8.0
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 49 NFRNTPGSSGSEEIPLDEKKEEEKK 73
NF+ +S EEI + K+E+KK
Sbjct: 38 NFKK--ATSEKEEIEIKPTKKEDKK 60
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.132 0.378
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,833,181
Number of extensions: 296122
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 16
Length of query: 73
Length of database: 10,937,602
Length adjustment: 43
Effective length of query: 30
Effective length of database: 9,030,380
Effective search space: 270911400
Effective search space used: 270911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.2 bits)