Query psy15775
Match_columns 191
No_of_seqs 245 out of 2114
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 21:03:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0157|consensus 100.0 1.5E-31 3.2E-36 239.2 16.8 173 3-188 223-496 (497)
2 PLN02169 fatty acid (omega-1)- 100.0 3.3E-30 7.2E-35 230.4 14.9 112 65-187 385-499 (500)
3 KOG0159|consensus 100.0 3.9E-29 8.5E-34 219.5 15.2 169 10-189 256-519 (519)
4 PLN02426 cytochrome P450, fami 100.0 1.9E-28 4E-33 219.4 14.7 114 66-189 385-501 (502)
5 PLN03234 cytochrome P450 83B1; 100.0 4.5E-28 9.7E-33 215.9 14.3 114 64-187 377-498 (499)
6 KOG0156|consensus 100.0 5.1E-28 1.1E-32 215.5 14.5 113 64-188 375-488 (489)
7 PLN02290 cytokinin trans-hydro 100.0 1.1E-27 2.4E-32 214.3 16.5 113 64-189 403-516 (516)
8 KOG0158|consensus 100.0 2.1E-28 4.6E-33 217.1 11.6 114 64-188 382-499 (499)
9 PLN02655 ent-kaurene oxidase 100.0 2.2E-27 4.8E-32 210.2 15.5 116 64-189 350-465 (466)
10 PLN02738 carotene beta-ring hy 99.9 4.1E-27 8.9E-32 215.9 17.1 116 64-189 478-596 (633)
11 PLN02936 epsilon-ring hydroxyl 99.9 3.9E-27 8.4E-32 209.9 16.1 115 64-189 366-483 (489)
12 PF00067 p450: Cytochrome P450 99.9 1.7E-27 3.7E-32 204.8 13.2 111 64-184 351-463 (463)
13 PLN00168 Cytochrome P450; Prov 99.9 4.2E-27 9.1E-32 211.0 15.9 116 64-189 396-518 (519)
14 PLN02971 tryptophan N-hydroxyl 99.9 4E-27 8.6E-32 212.5 15.3 114 64-188 416-534 (543)
15 PLN02500 cytochrome P450 90B1 99.9 4.4E-27 9.6E-32 209.3 15.4 110 64-186 372-488 (490)
16 PLN00110 flavonoid 3',5'-hydro 99.9 5.3E-27 1.1E-31 209.9 15.1 115 64-188 378-497 (504)
17 PTZ00404 cytochrome P450; Prov 99.9 7.2E-27 1.6E-31 207.3 15.3 109 64-187 372-482 (482)
18 PLN02183 ferulate 5-hydroxylas 99.9 8.1E-27 1.8E-31 209.0 14.9 114 64-187 392-511 (516)
19 PLN02987 Cytochrome P450, fami 99.9 3.4E-26 7.3E-31 203.4 16.8 113 64-189 358-470 (472)
20 PLN03141 3-epi-6-deoxocathaste 99.9 2.6E-26 5.6E-31 202.5 15.2 109 64-189 343-451 (452)
21 PLN02687 flavonoid 3'-monooxyg 99.9 2.9E-26 6.3E-31 205.5 15.5 115 64-188 386-509 (517)
22 PLN02774 brassinosteroid-6-oxi 99.9 3.2E-26 6.9E-31 202.6 13.6 108 64-186 355-462 (463)
23 PLN03018 homomethionine N-hydr 99.9 9.7E-26 2.1E-30 203.3 16.3 114 64-188 403-524 (534)
24 PLN03112 cytochrome P450 famil 99.9 9.4E-26 2E-30 201.8 15.5 116 64-189 385-509 (514)
25 PLN03195 fatty acid omega-hydr 99.9 4E-26 8.7E-31 204.3 12.0 113 65-188 402-516 (516)
26 PLN02302 ent-kaurenoic acid ox 99.9 2E-25 4.3E-30 197.9 15.9 111 64-189 379-489 (490)
27 PLN02196 abscisic acid 8'-hydr 99.9 1.3E-25 2.8E-30 198.9 13.2 108 64-187 355-462 (463)
28 PLN02394 trans-cinnamate 4-mon 99.9 1E-25 2.2E-30 200.9 12.0 115 64-188 382-502 (503)
29 KOG0684|consensus 99.9 6.8E-25 1.5E-29 189.7 10.9 165 14-188 219-485 (486)
30 PLN02966 cytochrome P450 83A1 99.9 2.2E-24 4.8E-29 192.6 11.2 114 64-189 380-499 (502)
31 COG2124 CypX Cytochrome P450 [ 99.9 1.8E-22 4E-27 176.8 12.3 103 64-187 308-410 (411)
32 PLN02648 allene oxide synthase 99.8 9.5E-19 2.1E-23 156.2 9.3 85 67-163 369-463 (480)
33 PF08492 SRP72: SRP72 RNA-bind 45.2 16 0.00036 23.3 1.7 9 97-105 44-52 (59)
34 KOG3262|consensus 22.8 24 0.00052 27.9 -0.4 45 54-104 94-141 (215)
35 PRK14759 potassium-transportin 21.8 39 0.00083 18.4 0.4 6 96-101 24-29 (29)
36 PF09604 Potass_KdpF: F subuni 20.2 44 0.00095 17.5 0.4 6 96-101 20-25 (25)
No 1
>KOG0157|consensus
Probab=99.98 E-value=1.5e-31 Score=239.18 Aligned_cols=173 Identities=40% Similarity=0.724 Sum_probs=144.1
Q ss_pred CCccchhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----C---------------C--------------
Q psy15775 3 RPWLWPSLIFGLTRDGKRHEENLKILHGFTRRVIEERKAARAAGG----V---------------R-------------- 49 (191)
Q Consensus 3 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~~rr~~~~~~~----~---------------~-------------- 49 (191)
.|+ +..+++.+. ..++..++.+.+++++.++|++||++....+ . .
T Consensus 223 ~p~-~~~~~~~~~-~~~~~~~a~~~~~~~~~~iI~~rr~~~~~~~~~~~~~~~d~L~~~~~~~~~~l~~~~i~d~v~tf~ 300 (497)
T KOG0157|consen 223 LPL-GTKFLYGLK-SERKLKKARKILHDFLEKIIRERREELEKEGSGEEKKRLDFLDTLLLEEDKPLTDEDIRDEVDTFM 300 (497)
T ss_pred Cch-hhhHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhHHHHHHHhccCCCCHHHHHHHHHHhe
Confidence 454 445555455 7899999999999999999999997643211 0 0
Q ss_pred -CC--------------------------cccccccCCC-------------eE-------------------------E
Q psy15775 50 -EG--------------------------NDLDENFGEP-------------IL-------------------------T 64 (191)
Q Consensus 50 -aG--------------------------~Ei~~~~~~~-------------~i-------------------------~ 64 (191)
|| +|+++++|+. |+ +
T Consensus 301 faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~~~~~~~~~~~m~yl~~vi~EsLRLyppvp~~~R~~~~d~~ 380 (497)
T KOG0157|consen 301 FAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEILGNRDDKWEVEKLDQMKYLEMVIKESLRLYPPVPLVARKATKDVK 380 (497)
T ss_pred eeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCCChhhhhhhHHHHHHHHHHhccCCCCchhhcccCCCeE
Confidence 45 8888888732 00 6
Q ss_pred E-cCEEeCCCCEEEeehhhhcCCCCCCC-CCCCcCCCCCCCcccc-CCCCceeecCCCCCCccccccccchhhHHHHHHH
Q psy15775 65 A-REYLLPVGCMLNIEIVSLHRCADQYP-NPEVFQPDNFLPENVQ-KRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFAL 141 (191)
Q Consensus 65 ~-~g~~ip~gt~v~~~~~~~~~~~~~~~-~p~~F~P~R~l~~~~~-~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~ 141 (191)
+ +||.||||+.|.+++|++|||+.+|+ ||++||||||+++... ..++++|+|||+|+|.|+| ++||+
T Consensus 381 l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG----------~~fA~ 450 (497)
T KOG0157|consen 381 LPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIG----------QKFAM 450 (497)
T ss_pred cCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccchh----------HHHHH
Confidence 7 58999999999999999999999996 9999999999965433 5678999999999999999 99999
Q ss_pred HHHHHHHHHHhhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEEcc
Q psy15775 142 LEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPRH 188 (191)
Q Consensus 142 ~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~ 188 (191)
+|||++++.|+++|++++..+.. ......++++|+.+++|++++|.
T Consensus 451 lemKv~l~~ll~~f~~~~~~~~~-~~~~~~~~l~~~~gl~v~~~~r~ 496 (497)
T KOG0157|consen 451 LEMKVVLAHLLRRFRIEPVGGDK-PKPVPELTLRPKNGLKVKLRPRG 496 (497)
T ss_pred HHHHHHHHHHHHheEEEecCCCC-ceeeeEEEEEecCCeEEEEEeCC
Confidence 99999999999999999876543 67788999999999999999996
No 2
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.97 E-value=3.3e-30 Score=230.43 Aligned_cols=112 Identities=24% Similarity=0.500 Sum_probs=99.1
Q ss_pred EcCEEeCCCCEEEeehhhhcCCCCCC-CCCCCcCCCCCCCccccCC--CCceeecCCCCCCccccccccchhhHHHHHHH
Q psy15775 65 AREYLLPVGCMLNIEIVSLHRCADQY-PNPEVFQPDNFLPENVQKR--HNYSYIPFSAGPRNCIGEVVEDIIYESQKFAL 141 (191)
Q Consensus 65 ~~g~~ip~gt~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~~~~--~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~ 141 (191)
++|+.||+||.|.+++|++||||++| +||++|+||||++++.... .+++|+|||+|+|.|+| ++||+
T Consensus 385 ~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG----------~~~A~ 454 (500)
T PLN02169 385 PSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLG----------KHLAL 454 (500)
T ss_pred cCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcC----------HHHHH
Confidence 48999999999999999999999999 8999999999997654332 37889999999999999 99999
Q ss_pred HHHHHHHHHHhhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEEc
Q psy15775 142 LEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPR 187 (191)
Q Consensus 142 ~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R 187 (191)
+|+++++|.||++|++++.++. ++.....++++|++++.|++++|
T Consensus 455 ~e~k~~la~ll~~f~~~~~~~~-~~~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 455 LQMKIVALEIIKNYDFKVIEGH-KIEAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred HHHHHHHHHHHHHCEEEEcCCC-CcccccceEEecCCCEEEEEEeC
Confidence 9999999999999999886542 34445568899999999999987
No 3
>KOG0159|consensus
Probab=99.96 E-value=3.9e-29 Score=219.55 Aligned_cols=169 Identities=25% Similarity=0.451 Sum_probs=148.9
Q ss_pred hhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------------------------------CC-------
Q psy15775 10 LIFGLTRDGKRHEENLKILHGFTRRVIEERKAARAAGGVR-------------------------------EG------- 51 (191)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~iI~~rr~~~~~~~~~-------------------------------aG------- 51 (191)
|-+..|+.|+++.++++.+.++..++|+++.++.+.+... ||
T Consensus 256 ~r~~~t~~wk~~~~~~D~i~~~~~~~Id~~l~~l~~~~~~~~~~~~~l~~~L~~~~l~~k~~~~~~~dll~aGvDTTs~t 335 (519)
T KOG0159|consen 256 WRYFPTKVWKDFVRAWDQIFDVGDKYIDNALEELEKQDSAGSEYTGSLLELLLRKELSRKDAKANVMDLLAAGVDTTSNT 335 (519)
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHccCCHHHHHHHHHHHHHHhccchHHH
Confidence 5566789999999999999999999999988776554331 33
Q ss_pred -------------------cccccccCCC----------------------------------e----EEEcCEEeCCCC
Q psy15775 52 -------------------NDLDENFGEP----------------------------------I----LTAREYLLPVGC 74 (191)
Q Consensus 52 -------------------~Ei~~~~~~~----------------------------------~----i~~~g~~ip~gt 74 (191)
+|+.+++..+ + ++++||.|||||
T Consensus 336 l~~~Ly~LarnP~~Q~~L~~Ei~~~~p~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~~~R~l~~D~vL~gY~vPagT 415 (519)
T KOG0159|consen 336 LLWALYELARNPEVQQRLREEILAVLPSGNSELTQKALTNMPYLRACIKETLRLYPVVPGNGRVLPKDLVLSGYHVPAGT 415 (519)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhhCCCcccccchHHHhhCHHHHHHHHhhhceeccccccccccchhceeccceecCCC
Confidence 8888887762 1 188999999999
Q ss_pred EEEeehhhhcCCCCCCCCCCCcCCCCCCCccccCCCCceeecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHhhh
Q psy15775 75 MLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALLEEKCVLASILRK 154 (191)
Q Consensus 75 ~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~e~~~~la~ll~~ 154 (191)
.|.++.+.+.+||++|++|++|+||||+++.....+++.++|||.|+|.|+| +++|.+||.+.||+|+++
T Consensus 416 ~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~~~~~pF~~LPFGfG~R~C~G----------RRiAElEl~llLarllr~ 485 (519)
T KOG0159|consen 416 LVVLFLYVLGRNPAYFPDPEEFLPERWLKPSTKTIHPFASLPFGFGPRMCLG----------RRIAELELHLLLARLLRN 485 (519)
T ss_pred eEEEeehhhccChhhCCCccccChhhhcccccCCCCCceecCCCCCccccch----------HHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999877677899999999999999999 999999999999999999
Q ss_pred CEEEecCCCCCeeEeeeEEEeeCCCceEEEEEccC
Q psy15775 155 FKVISLEKLDDVTIMIDLILRPASGVKVKLEPRHK 189 (191)
Q Consensus 155 f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~~ 189 (191)
|+++...+ .++.....+++.|..++.++|++|..
T Consensus 486 f~V~~~~~-~pv~~~~~~il~P~~~l~f~f~~r~~ 519 (519)
T KOG0159|consen 486 FKVEFLHE-EPVEYVYRFILVPNRPLRFKFRPRNE 519 (519)
T ss_pred cceeecCC-CCccceeEEEEcCCCCcceeeeeCCC
Confidence 99997653 67888899999999999999999863
No 4
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.96 E-value=1.9e-28 Score=219.37 Aligned_cols=114 Identities=22% Similarity=0.436 Sum_probs=98.7
Q ss_pred cCEEeCCCCEEEeehhhhcCCCCCC-CCCCCcCCCCCCCccc-cCCCCceeecCCCCCCccccccccchhhHHHHHHHHH
Q psy15775 66 REYLLPVGCMLNIEIVSLHRCADQY-PNPEVFQPDNFLPENV-QKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALLE 143 (191)
Q Consensus 66 ~g~~ip~gt~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~-~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~e 143 (191)
+|+.||+||.|.++.|++|||+++| +||++|+||||++++. ....++.|+|||+|+|.|+| ++||++|
T Consensus 385 ~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG----------~~~A~~e 454 (502)
T PLN02426 385 DGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLG----------KEMALME 454 (502)
T ss_pred CCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCcc----------HHHHHHH
Confidence 8999999999999999999999999 9999999999996432 12345689999999999999 9999999
Q ss_pred HHHHHHHHhhhCEEEecCCCC-CeeEeeeEEEeeCCCceEEEEEccC
Q psy15775 144 EKCVLASILRKFKVISLEKLD-DVTIMIDLILRPASGVKVKLEPRHK 189 (191)
Q Consensus 144 ~~~~la~ll~~f~~~~~~~~~-~~~~~~~~~~~p~~~~~v~~~~R~~ 189 (191)
++++++.|+++|++++.++.. .+....++++.|++++.|++++|..
T Consensus 455 ~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~r~~ 501 (502)
T PLN02426 455 MKSVAVAVVRRFDIEVVGRSNRAPRFAPGLTATVRGGLPVRVRERVR 501 (502)
T ss_pred HHHHHHHHHHHceEEEecCCCCCCcccceeEEecCCCEEEEEEEccC
Confidence 999999999999999864332 2344456899999999999999864
No 5
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.95 E-value=4.5e-28 Score=215.89 Aligned_cols=114 Identities=18% Similarity=0.404 Sum_probs=96.5
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCC-CCCCCcCCCCCCCcccc---CCCCceeecCCCCCCccccccccchhhHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQY-PNPEVFQPDNFLPENVQ---KRHNYSYIPFSAGPRNCIGEVVEDIIYESQKF 139 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~~---~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~ 139 (191)
+++||.||+||.|+++.|++||||++| +||++|+||||+++... ...+..|+|||+|+|.|+| +++
T Consensus 377 ~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G----------~~~ 446 (499)
T PLN03234 377 KIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPA----------MHL 446 (499)
T ss_pred eECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCC----------hHH
Confidence 789999999999999999999999999 89999999999965432 2346789999999999999 999
Q ss_pred HHHHHHHHHHHHhhhCEEEecCCC--C--CeeEeeeEEEeeCCCceEEEEEc
Q psy15775 140 ALLEEKCVLASILRKFKVISLEKL--D--DVTIMIDLILRPASGVKVKLEPR 187 (191)
Q Consensus 140 A~~e~~~~la~ll~~f~~~~~~~~--~--~~~~~~~~~~~p~~~~~v~~~~R 187 (191)
|++|+++++|.|+++|++++.++. . ......+++..|+..+.+..++|
T Consensus 447 A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 447 GIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred HHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence 999999999999999999987542 2 23345677777887777777665
No 6
>KOG0156|consensus
Probab=99.95 E-value=5.1e-28 Score=215.53 Aligned_cols=113 Identities=27% Similarity=0.447 Sum_probs=97.4
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCcc-ccCCCCceeecCCCCCCccccccccchhhHHHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPEN-VQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALL 142 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~-~~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~ 142 (191)
+++||.|||||.|+++.|++||||++|+||++|+||||++++ ... ....++|||.|+|.||| ..+|++
T Consensus 375 ~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~d~~~-~~~~~iPFG~GRR~CpG----------~~La~~ 443 (489)
T KOG0156|consen 375 KIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSNDGKG-LDFKLIPFGSGRRICPG----------EGLARA 443 (489)
T ss_pred eEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCccccC-CceEecCCCCCcCCCCc----------HHHHHH
Confidence 899999999999999999999999999999999999999874 444 67889999999999999 999999
Q ss_pred HHHHHHHHHhhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEEcc
Q psy15775 143 EEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPRH 188 (191)
Q Consensus 143 e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~ 188 (191)
++.++++.||++|+|++..+..+.... +.++..+.++.+...+|.
T Consensus 444 ~l~l~la~llq~F~w~~~~~~~d~~e~-~~~~~~~~pl~~~~~~r~ 488 (489)
T KOG0156|consen 444 ELFLFLANLLQRFDWKLPGGKVDMEEA-GLTLKKKKPLKAVPVPRL 488 (489)
T ss_pred HHHHHHHHHHheeeeecCCCCCCCccc-ccceecCCcceeeeecCC
Confidence 999999999999999987663244444 366666667777777663
No 7
>PLN02290 cytokinin trans-hydroxylase
Probab=99.95 E-value=1.1e-27 Score=214.31 Aligned_cols=113 Identities=31% Similarity=0.607 Sum_probs=98.4
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCC-CCCCCcCCCCCCCccccCCCCceeecCCCCCCccccccccchhhHHHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQY-PNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALL 142 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~ 142 (191)
+++||.||+||.|+++.|++||||++| +||++|+||||+++. ...+..|+|||.|+|.|+| ++||++
T Consensus 403 ~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~--~~~~~~~~pFG~G~R~C~G----------~~lA~~ 470 (516)
T PLN02290 403 KLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRP--FAPGRHFIPFAAGPRNCIG----------QAFAMM 470 (516)
T ss_pred eECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCC--CCCCCeEecCCCCCCCCcc----------HHHHHH
Confidence 789999999999999999999999999 899999999999532 2234579999999999999 999999
Q ss_pred HHHHHHHHHhhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEEccC
Q psy15775 143 EEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPRHK 189 (191)
Q Consensus 143 e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~~ 189 (191)
|++++++.|+++|++++.++.. ......+++.|+++++|++++|++
T Consensus 471 el~l~la~ll~~f~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~ 516 (516)
T PLN02290 471 EAKIILAMLISKFSFTISDNYR-HAPVVVLTIKPKYGVQVCLKPLNP 516 (516)
T ss_pred HHHHHHHHHHHhceEeeCCCcc-cCccceeeecCCCCCeEEEEeCCC
Confidence 9999999999999999765422 223346899999999999999974
No 8
>KOG0158|consensus
Probab=99.95 E-value=2.1e-28 Score=217.07 Aligned_cols=114 Identities=38% Similarity=0.674 Sum_probs=103.8
Q ss_pred EEc-CEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccccCCCCceeecCCCCCCccccccccchhhHHHHHHHH
Q psy15775 64 TAR-EYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALL 142 (191)
Q Consensus 64 ~~~-g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~ 142 (191)
++. ++.||+|+.|.++.|++||||++||||++|+||||.+++.+..++.+|+|||.|||+||| .+||++
T Consensus 382 ~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~~~~~~~ylPFG~GPR~CIG----------mRfa~m 451 (499)
T KOG0158|consen 382 EIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNKSRHPGAYLPFGVGPRNCIG----------MRFALM 451 (499)
T ss_pred ecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCcccccCCccccCCCCCccccHH----------HHHHHH
Confidence 777 999999999999999999999999999999999999887777889999999999999999 999999
Q ss_pred HHHHHHHHHhhhCEEEecCCCCCeeEee---eEEEeeCCCceEEEEEcc
Q psy15775 143 EEKCVLASILRKFKVISLEKLDDVTIMI---DLILRPASGVKVKLEPRH 188 (191)
Q Consensus 143 e~~~~la~ll~~f~~~~~~~~~~~~~~~---~~~~~p~~~~~v~~~~R~ 188 (191)
|+|+.|++||++|+++..+..... ... +.++.|++++++++++|+
T Consensus 452 q~K~~L~~lL~~f~~~~~~~t~~~-~~~~~~~~~l~pk~gi~Lkl~~r~ 499 (499)
T KOG0158|consen 452 EAKLALAHLLRNFSFEVCPTTIIP-LEGDPKGFTLSPKGGIWLKLEPRD 499 (499)
T ss_pred HHHHHHHHHHhhCEEecCCcccCc-ccCCccceeeecCCceEEEEEeCC
Confidence 999999999999999987633333 444 789999999999999985
No 9
>PLN02655 ent-kaurene oxidase
Probab=99.95 E-value=2.2e-27 Score=210.19 Aligned_cols=116 Identities=25% Similarity=0.417 Sum_probs=102.0
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccccCCCCceeecCCCCCCccccccccchhhHHHHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALLE 143 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~e 143 (191)
+++||.|||||.|+++.+++|||+++|+||++|+||||++++........++|||+|+|.|+| ++||+.|
T Consensus 350 ~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~~~~~~~~~~Fg~G~r~C~G----------~~~A~~~ 419 (466)
T PLN02655 350 TLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAG----------SLQAMLI 419 (466)
T ss_pred ccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCcccCCcccccCCCCCCCCCCc----------HHHHHHH
Confidence 789999999999999999999999999999999999999765433345789999999999999 9999999
Q ss_pred HHHHHHHHhhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEEccC
Q psy15775 144 EKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPRHK 189 (191)
Q Consensus 144 ~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~~ 189 (191)
++++++.||++|++++.++..+.....++++.+++++.|++++|..
T Consensus 420 ~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 465 (466)
T PLN02655 420 ACMAIARLVQEFEWRLREGDEEKEDTVQLTTQKLHPLHAHLKPRGS 465 (466)
T ss_pred HHHHHHHHHHHeEEEeCCCCccccchhheeEeecCCcEEEEeecCC
Confidence 9999999999999998755433344557888899999999999864
No 10
>PLN02738 carotene beta-ring hydroxylase
Probab=99.95 E-value=4.1e-27 Score=215.86 Aligned_cols=116 Identities=26% Similarity=0.527 Sum_probs=100.5
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccc---cCCCCceeecCCCCCCccccccccchhhHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENV---QKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFA 140 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~---~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A 140 (191)
+++||.||+||.|+++.|.+||||++|+||++|+||||+.+.. .......|+|||.|+|.|+| ++||
T Consensus 478 ~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG----------~~lA 547 (633)
T PLN02738 478 MLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVG----------DMFA 547 (633)
T ss_pred eECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcC----------HHHH
Confidence 6899999999999999999999999999999999999984321 12345689999999999999 9999
Q ss_pred HHHHHHHHHHHhhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEEccC
Q psy15775 141 LLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPRHK 189 (191)
Q Consensus 141 ~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~~ 189 (191)
++|+++++|.|+++|+|++..+..++....+.++.|.++++|++++|.+
T Consensus 548 ~~El~l~LA~Llr~F~~el~~~~~~~~~~~~~~~~p~~~l~v~l~~R~~ 596 (633)
T PLN02738 548 SFENVVATAMLVRRFDFQLAPGAPPVKMTTGATIHTTEGLKMTVTRRTK 596 (633)
T ss_pred HHHHHHHHHHHHHhCeeEeCCCCCCcccccceEEeeCCCcEEEEEECCC
Confidence 9999999999999999998765444444456788898999999999964
No 11
>PLN02936 epsilon-ring hydroxylase
Probab=99.95 E-value=3.9e-27 Score=209.95 Aligned_cols=115 Identities=26% Similarity=0.552 Sum_probs=98.7
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCcccc---CCCCceeecCCCCCCccccccccchhhHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQ---KRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFA 140 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~---~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A 140 (191)
.++||.||+||.|+++.+++||||++|+||++|+||||+.++.. ...+..|+|||.|+|.||| ++||
T Consensus 366 ~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G----------~~la 435 (489)
T PLN02936 366 LPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVG----------DQFA 435 (489)
T ss_pred ccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCC----------HHHH
Confidence 46899999999999999999999999999999999999964321 1234689999999999999 9999
Q ss_pred HHHHHHHHHHHhhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEEccC
Q psy15775 141 LLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPRHK 189 (191)
Q Consensus 141 ~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~~ 189 (191)
++|++++++.|+++|++++.++. +.....+++..|..++.|++++|..
T Consensus 436 ~~~~~~~la~ll~~f~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~R~~ 483 (489)
T PLN02936 436 LLEAIVALAVLLQRLDLELVPDQ-DIVMTTGATIHTTNGLYMTVSRRRV 483 (489)
T ss_pred HHHHHHHHHHHHHhCeEEecCCC-ccceecceEEeeCCCeEEEEEeeeC
Confidence 99999999999999999987543 3333445778888899999999975
No 12
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.95 E-value=1.7e-27 Score=204.80 Aligned_cols=111 Identities=33% Similarity=0.666 Sum_probs=90.0
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccc-cCCCCceeecCCCCCCccccccccchhhHHHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENV-QKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALL 142 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~-~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~ 142 (191)
+++||.||+||.|+++.+++|+|+++|+||++|+||||++++. .......|+|||.|+|.|+| ++||++
T Consensus 351 ~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G----------~~~A~~ 420 (463)
T PF00067_consen 351 TLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPG----------RNLAMM 420 (463)
T ss_dssp EETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TT----------HHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchH----------HHHHHH
Confidence 8899999999999999999999999999999999999998766 34567889999999999999 999999
Q ss_pred HHHHHHHHHhhhCEEEecCCCCC-eeEeeeEEEeeCCCceEEE
Q psy15775 143 EEKCVLASILRKFKVISLEKLDD-VTIMIDLILRPASGVKVKL 184 (191)
Q Consensus 143 e~~~~la~ll~~f~~~~~~~~~~-~~~~~~~~~~p~~~~~v~~ 184 (191)
|+++++|.||++|++++.++... ........+.|+.++.|+|
T Consensus 421 ~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (463)
T PF00067_consen 421 EMKVFLAKLLRRFDFELVPGSEPEPQEQQNGFLLPPKPLKVKF 463 (463)
T ss_dssp HHHHHHHHHHHHEEEEESTTSSGGEEECSCSSSEEESSSEEEE
T ss_pred HHHHHHHHHHHhCEEEECCCCCCCCccccCceEeeCCCcEEeC
Confidence 99999999999999998654332 2222212344444788775
No 13
>PLN00168 Cytochrome P450; Provisional
Probab=99.95 E-value=4.2e-27 Score=211.01 Aligned_cols=116 Identities=23% Similarity=0.447 Sum_probs=98.0
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccc------cCCCCceeecCCCCCCccccccccchhhHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENV------QKRHNYSYIPFSAGPRNCIGEVVEDIIYESQ 137 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~------~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~ 137 (191)
+++||.|||||.|.++++++||||++|+||++|+||||+++.. ...+++.|+|||.|+|.||| +
T Consensus 396 ~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G----------~ 465 (519)
T PLN00168 396 EVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAG----------L 465 (519)
T ss_pred cCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCc----------H
Confidence 7899999999999999999999999999999999999996422 11235689999999999999 9
Q ss_pred HHHHHHHHHHHHHHhhhCEEEecCCCC-CeeEeeeEEEeeCCCceEEEEEccC
Q psy15775 138 KFALLEEKCVLASILRKFKVISLEKLD-DVTIMIDLILRPASGVKVKLEPRHK 189 (191)
Q Consensus 138 ~~A~~e~~~~la~ll~~f~~~~~~~~~-~~~~~~~~~~~p~~~~~v~~~~R~~ 189 (191)
+||++|++++++.||++|+|++.++.. +.....++++.+.++++|++++|+-
T Consensus 466 ~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ 518 (519)
T PLN00168 466 GIAMLHLEYFVANMVREFEWKEVPGDEVDFAEKREFTTVMAKPLRARLVPRRT 518 (519)
T ss_pred HHHHHHHHHHHHHHHHHccceeCCCCcCChhhhceeEEeecCCcEEEEEeccC
Confidence 999999999999999999999865422 2222345677788899999999863
No 14
>PLN02971 tryptophan N-hydroxylase
Probab=99.95 E-value=4e-27 Score=212.45 Aligned_cols=114 Identities=21% Similarity=0.303 Sum_probs=96.1
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCcccc---CCCCceeecCCCCCCccccccccchhhHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQ---KRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFA 140 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~---~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A 140 (191)
+++||.|||||.|+++.|++||||++|+||++|+||||++++.. ..+++.|+|||+|+|.|+| ++||
T Consensus 416 ~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G----------~~lA 485 (543)
T PLN02971 416 TVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAA----------PALG 485 (543)
T ss_pred eECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCC----------HHHH
Confidence 68999999999999999999999999999999999999975432 1346789999999999999 9999
Q ss_pred HHHHHHHHHHHhhhCEEEecCCC--CCeeEeeeEEEeeCCCceEEEEEcc
Q psy15775 141 LLEEKCVLASILRKFKVISLEKL--DDVTIMIDLILRPASGVKVKLEPRH 188 (191)
Q Consensus 141 ~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~~~p~~~~~v~~~~R~ 188 (191)
++|+++++|.||++|++++.++. .+.....+ ++.-++++.+.+++|.
T Consensus 486 ~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 534 (543)
T PLN02971 486 TAITTMMLARLLQGFKWKLAGSETRVELMESSH-DMFLSKPLVMVGELRL 534 (543)
T ss_pred HHHHHHHHHHHHHhCEEEeCCCCCCcchhhhcC-cccccccceeeeeecC
Confidence 99999999999999999986543 23334445 5534448999999984
No 15
>PLN02500 cytochrome P450 90B1
Probab=99.95 E-value=4.4e-27 Score=209.31 Aligned_cols=110 Identities=21% Similarity=0.413 Sum_probs=92.5
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccccC-------CCCceeecCCCCCCccccccccchhhHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQK-------RHNYSYIPFSAGPRNCIGEVVEDIIYES 136 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~-------~~~~~~~pFg~G~r~C~G~~~~~~~~~~ 136 (191)
+++||.|||||.|+++.|++||||++|+||++|+||||++++... .+++.|+|||+|+|.|+|
T Consensus 372 ~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG---------- 441 (490)
T PLN02500 372 RYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAG---------- 441 (490)
T ss_pred eeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCc----------
Confidence 789999999999999999999999999999999999999654321 245789999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEE
Q psy15775 137 QKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEP 186 (191)
Q Consensus 137 ~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~ 186 (191)
++||++|+++++|.|+++|++++.++.... . ... ..+.+++.|++++
T Consensus 442 ~~~A~~el~~~la~ll~~f~~~~~~~~~~~-~-~~~-~~~~~~l~~~~~~ 488 (490)
T PLN02500 442 SELAKLEMAVFIHHLVLNFNWELAEADQAF-A-FPF-VDFPKGLPIRVRR 488 (490)
T ss_pred HHHHHHHHHHHHHHHHhccEEEEcCCCcce-e-ccc-ccCCCCceEEEEe
Confidence 999999999999999999999986554322 2 222 3445699999876
No 16
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.95 E-value=5.3e-27 Score=209.92 Aligned_cols=115 Identities=26% Similarity=0.532 Sum_probs=98.7
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccccCC----CCceeecCCCCCCccccccccchhhHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKR----HNYSYIPFSAGPRNCIGEVVEDIIYESQKF 139 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~----~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~ 139 (191)
+++||.||+||.|+++.|++|+||++|+||++|+||||++++.... ..+.|+|||+|+|.|+| ++|
T Consensus 378 ~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G----------~~~ 447 (504)
T PLN00110 378 EVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAG----------TRM 447 (504)
T ss_pred eeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCc----------HHH
Confidence 7899999999999999999999999999999999999996543221 23579999999999999 999
Q ss_pred HHHHHHHHHHHHhhhCEEEecCCCC-CeeEeeeEEEeeCCCceEEEEEcc
Q psy15775 140 ALLEEKCVLASILRKFKVISLEKLD-DVTIMIDLILRPASGVKVKLEPRH 188 (191)
Q Consensus 140 A~~e~~~~la~ll~~f~~~~~~~~~-~~~~~~~~~~~p~~~~~v~~~~R~ 188 (191)
|++|+++++|.|+++|++++.++.. +.....++++.|+.++.+++++|.
T Consensus 448 A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 497 (504)
T PLN00110 448 GIVLVEYILGTLVHSFDWKLPDGVELNMDEAFGLALQKAVPLSAMVTPRL 497 (504)
T ss_pred HHHHHHHHHHHHHHhceeecCCCCccCcccccccccccCCCceEeeccCC
Confidence 9999999999999999999865432 222345678889989999999985
No 17
>PTZ00404 cytochrome P450; Provisional
Probab=99.95 E-value=7.2e-27 Score=207.33 Aligned_cols=109 Identities=37% Similarity=0.588 Sum_probs=94.5
Q ss_pred EE-cCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccccCCCCceeecCCCCCCccccccccchhhHHHHHHHH
Q psy15775 64 TA-REYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALL 142 (191)
Q Consensus 64 ~~-~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~ 142 (191)
++ +||.||+||.|+++.+++||||++|+||++|+||||+++. .+..|+|||+|+|.|+| ++||++
T Consensus 372 ~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~----~~~~~~pFg~G~R~C~G----------~~~A~~ 437 (482)
T PTZ00404 372 IIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD----SNDAFMPFSIGPRNCVG----------QQFAQD 437 (482)
T ss_pred EecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC----CCCceeccCCCCCCCcc----------HHHHHH
Confidence 78 9999999999999999999999999999999999998642 45689999999999999 999999
Q ss_pred HHHHHHHHHhhhCEEEecCCCC-CeeEeeeEEEeeCCCceEEEEEc
Q psy15775 143 EEKCVLASILRKFKVISLEKLD-DVTIMIDLILRPASGVKVKLEPR 187 (191)
Q Consensus 143 e~~~~la~ll~~f~~~~~~~~~-~~~~~~~~~~~p~~~~~v~~~~R 187 (191)
|++++++.|+++|++++.++.. +.....++++.|. +++|.+++|
T Consensus 438 e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~R 482 (482)
T PTZ00404 438 ELYLAFSNIILNFKLKSIDGKKIDETEEYGLTLKPN-KFKVLLEKR 482 (482)
T ss_pred HHHHHHHHHHHhcEEecCCCCCCCcccccceeecCC-CceeeeecC
Confidence 9999999999999998764432 2233456777765 799999987
No 18
>PLN02183 ferulate 5-hydroxylase
Probab=99.94 E-value=8.1e-27 Score=209.02 Aligned_cols=114 Identities=21% Similarity=0.424 Sum_probs=92.9
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccccC--CCCceeecCCCCCCccccccccchhhHHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQK--RHNYSYIPFSAGPRNCIGEVVEDIIYESQKFAL 141 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~--~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~ 141 (191)
+++||.|||||.|.++.|++|||+++|+||++|+||||++++... .+.+.|+|||.|+|.|+| ++||+
T Consensus 392 ~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG----------~~lA~ 461 (516)
T PLN02183 392 EVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPG----------MQLGL 461 (516)
T ss_pred eECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCC----------hHHHH
Confidence 789999999999999999999999999999999999999654322 345689999999999999 99999
Q ss_pred HHHHHHHHHHhhhCEEEecCCCC--Cee--EeeeEEEeeCCCceEEEEEc
Q psy15775 142 LEEKCVLASILRKFKVISLEKLD--DVT--IMIDLILRPASGVKVKLEPR 187 (191)
Q Consensus 142 ~e~~~~la~ll~~f~~~~~~~~~--~~~--~~~~~~~~p~~~~~v~~~~R 187 (191)
+|+++++|.|+++|++++.++.. ... ...+.++.+..++.+.+++|
T Consensus 462 ~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 511 (516)
T PLN02183 462 YALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYR 511 (516)
T ss_pred HHHHHHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecC
Confidence 99999999999999999765421 121 23344443444677777776
No 19
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.94 E-value=3.4e-26 Score=203.44 Aligned_cols=113 Identities=17% Similarity=0.334 Sum_probs=99.2
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccccCCCCceeecCCCCCCccccccccchhhHHHHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALLE 143 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~e 143 (191)
+++||.||+||.|+++.+++|+|+++|+||++|+||||+++.........++|||+|+|.|+| ++||++|
T Consensus 358 ~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~~~~~~~~l~FG~G~r~C~G----------~~lA~~e 427 (472)
T PLN02987 358 EVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGTTVPSNVFTPFGGGPRLCPG----------YELARVA 427 (472)
T ss_pred eECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCCCCCCcceECCCCCCcCCCc----------HHHHHHH
Confidence 789999999999999999999999999999999999999654333345689999999999999 9999999
Q ss_pred HHHHHHHHhhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEEccC
Q psy15775 144 EKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPRHK 189 (191)
Q Consensus 144 ~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~~ 189 (191)
++++++.|+++|++++.++. ++. ...++.|.+++.+++++|+.
T Consensus 428 ~~~~la~ll~~f~~~~~~~~-~~~--~~~~~~p~~~~~~~~~~r~~ 470 (472)
T PLN02987 428 LSVFLHRLVTRFSWVPAEQD-KLV--FFPTTRTQKRYPINVKRRDV 470 (472)
T ss_pred HHHHHHHHHhceEEEECCCC-cee--ecccccCCCCceEEEEeccc
Confidence 99999999999999986543 333 35699999999999999964
No 20
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.94 E-value=2.6e-26 Score=202.54 Aligned_cols=109 Identities=24% Similarity=0.413 Sum_probs=96.8
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccccCCCCceeecCCCCCCccccccccchhhHHHHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALLE 143 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~e 143 (191)
+++||.||+||.|+++.+++|+|+++|+||++|+||||+++.. .+..|+|||+|+|.|+| ++||++|
T Consensus 343 ~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~---~~~~~~pFG~G~R~C~G----------~~lA~~e 409 (452)
T PLN03141 343 EIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM---NNSSFTPFGGGQRLCPG----------LDLARLE 409 (452)
T ss_pred eECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCC---CCCCCCCCCCCCCCCCh----------HHHHHHH
Confidence 7899999999999999999999999999999999999996532 35689999999999999 9999999
Q ss_pred HHHHHHHHhhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEEccC
Q psy15775 144 EKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPRHK 189 (191)
Q Consensus 144 ~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~~ 189 (191)
+++++|.|+++|++++.++. . ....+++|..++.|++++|+.
T Consensus 410 l~~~la~ll~~f~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~ 451 (452)
T PLN03141 410 ASIFLHHLVTRFRWVAEEDT--I--VNFPTVRMKRKLPIWVTRIDD 451 (452)
T ss_pred HHHHHHHHHhcCeeecCCCC--e--eecccccCCCCceEEEEeCCC
Confidence 99999999999999876542 2 223688999999999999963
No 21
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.94 E-value=2.9e-26 Score=205.52 Aligned_cols=115 Identities=28% Similarity=0.502 Sum_probs=95.5
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCcccc-----CCCCceeecCCCCCCccccccccchhhHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQ-----KRHNYSYIPFSAGPRNCIGEVVEDIIYESQK 138 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~-----~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~ 138 (191)
+++||.||+||.|.++.|++||||++|+||++|+||||++++.. ...+..|+|||.|+|.|+| ++
T Consensus 386 ~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G----------~~ 455 (517)
T PLN02687 386 EINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAG----------LS 455 (517)
T ss_pred eECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCC----------hH
Confidence 78999999999999999999999999999999999999965322 1245689999999999999 99
Q ss_pred HHHHHHHHHHHHHhhhCEEEecCCCC--Ce--eEeeeEEEeeCCCceEEEEEcc
Q psy15775 139 FALLEEKCVLASILRKFKVISLEKLD--DV--TIMIDLILRPASGVKVKLEPRH 188 (191)
Q Consensus 139 ~A~~e~~~~la~ll~~f~~~~~~~~~--~~--~~~~~~~~~p~~~~~v~~~~R~ 188 (191)
||++|+++++|.||++|++++.++.. ++ .....+++.+..++.+++++|.
T Consensus 456 ~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 509 (517)
T PLN02687 456 WGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPRL 509 (517)
T ss_pred HHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeeccCC
Confidence 99999999999999999999865432 22 2233556666667888888874
No 22
>PLN02774 brassinosteroid-6-oxidase
Probab=99.94 E-value=3.2e-26 Score=202.62 Aligned_cols=108 Identities=17% Similarity=0.393 Sum_probs=92.4
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccccCCCCceeecCCCCCCccccccccchhhHHHHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALLE 143 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~e 143 (191)
+++||.|||||.|+++.+++||||++|+||++|+||||++++... ...|+|||+|+|.|+| ++||++|
T Consensus 355 ~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~~--~~~~lpFG~G~r~C~G----------~~~A~~e 422 (463)
T PLN02774 355 ELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLES--HNYFFLFGGGTRLCPG----------KELGIVE 422 (463)
T ss_pred eECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcCC--CccccCcCCCCCcCCc----------HHHHHHH
Confidence 789999999999999999999999999999999999999654221 2369999999999999 9999999
Q ss_pred HHHHHHHHhhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEE
Q psy15775 144 EKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEP 186 (191)
Q Consensus 144 ~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~ 186 (191)
++++++.||++|++++.++.. ... ..++.|+++++|++++
T Consensus 423 ~~~~la~Ll~~f~~~~~~~~~-~~~--~~~~~p~~g~~~~~~~ 462 (463)
T PLN02774 423 ISTFLHYFVTRYRWEEVGGDK-LMK--FPRVEAPNGLHIRVSP 462 (463)
T ss_pred HHHHHHHHHHhceEEECCCCc-ccc--CCCCCCCCCceEEeee
Confidence 999999999999999875532 222 2355688899999874
No 23
>PLN03018 homomethionine N-hydroxylase
Probab=99.94 E-value=9.7e-26 Score=203.27 Aligned_cols=114 Identities=22% Similarity=0.395 Sum_probs=95.4
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccccC------CCCceeecCCCCCCccccccccchhhHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQK------RHNYSYIPFSAGPRNCIGEVVEDIIYESQ 137 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~------~~~~~~~pFg~G~r~C~G~~~~~~~~~~~ 137 (191)
+++||.|||||.|+++.|++|+||++|+||++|+||||++++... ..+..|+|||+|+|.|+| +
T Consensus 403 ~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G----------~ 472 (534)
T PLN03018 403 TLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVG----------V 472 (534)
T ss_pred eECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCcc----------H
Confidence 789999999999999999999999999999999999999644321 245689999999999999 9
Q ss_pred HHHHHHHHHHHHHHhhhCEEEecCCCCC--eeEeeeEEEeeCCCceEEEEEcc
Q psy15775 138 KFALLEEKCVLASILRKFKVISLEKLDD--VTIMIDLILRPASGVKVKLEPRH 188 (191)
Q Consensus 138 ~~A~~e~~~~la~ll~~f~~~~~~~~~~--~~~~~~~~~~p~~~~~v~~~~R~ 188 (191)
+||++|+++++|.|+++|++++.++..+ .....+.+..| .++.|++++|.
T Consensus 473 ~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~p-~~~~v~~~~R~ 524 (534)
T PLN03018 473 KVGTIMMVMMLARFLQGFNWKLHQDFGPLSLEEDDASLLMA-KPLLLSVEPRL 524 (534)
T ss_pred HHHHHHHHHHHHHHHHhceEEeCCCCCCCCccccccceecC-CCeEEEEEecc
Confidence 9999999999999999999997654222 22233455555 49999999994
No 24
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.94 E-value=9.4e-26 Score=201.77 Aligned_cols=116 Identities=22% Similarity=0.412 Sum_probs=96.6
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccc---c--CCCCceeecCCCCCCccccccccchhhHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENV---Q--KRHNYSYIPFSAGPRNCIGEVVEDIIYESQK 138 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~---~--~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~ 138 (191)
+++|+.||+||.|.++.|++||||++|+||++|+||||+.+.. . ....+.|+|||.|+|.|+| ++
T Consensus 385 ~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G----------~~ 454 (514)
T PLN03112 385 TINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPG----------AP 454 (514)
T ss_pred eEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCc----------HH
Confidence 7899999999999999999999999999999999999865321 1 1235689999999999999 99
Q ss_pred HHHHHHHHHHHHHhhhCEEEecCCC--CCe--eEeeeEEEeeCCCceEEEEEccC
Q psy15775 139 FALLEEKCVLASILRKFKVISLEKL--DDV--TIMIDLILRPASGVKVKLEPRHK 189 (191)
Q Consensus 139 ~A~~e~~~~la~ll~~f~~~~~~~~--~~~--~~~~~~~~~p~~~~~v~~~~R~~ 189 (191)
||++|++++++.||++|++++..+. .++ ....++++.+.+++.+++++|..
T Consensus 455 ~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 509 (514)
T PLN03112 455 LGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPRLA 509 (514)
T ss_pred HHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEeecCCc
Confidence 9999999999999999999976432 122 22345666777799999999963
No 25
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.93 E-value=4e-26 Score=204.34 Aligned_cols=113 Identities=28% Similarity=0.471 Sum_probs=97.7
Q ss_pred EcCEEeCCCCEEEeehhhhcCCCCCC-CCCCCcCCCCCCCccc-cCCCCceeecCCCCCCccccccccchhhHHHHHHHH
Q psy15775 65 AREYLLPVGCMLNIEIVSLHRCADQY-PNPEVFQPDNFLPENV-QKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALL 142 (191)
Q Consensus 65 ~~g~~ip~gt~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~-~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~ 142 (191)
++|+.|||||.|.++.|++||||++| +||++|+||||++++. ....++.|+|||+|+|.|+| ++||++
T Consensus 402 ~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG----------~~lA~~ 471 (516)
T PLN03195 402 PDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLG----------KDSAYL 471 (516)
T ss_pred CCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcC----------HHHHHH
Confidence 48999999999999999999999999 9999999999996432 23355689999999999999 999999
Q ss_pred HHHHHHHHHhhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEEcc
Q psy15775 143 EEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPRH 188 (191)
Q Consensus 143 e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~ 188 (191)
|+++++|.|+++|++++.++ .+.......++.|..++.|++++|.
T Consensus 472 e~~~~la~ll~~f~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~r~ 516 (516)
T PLN03195 472 QMKMALALLCRFFKFQLVPG-HPVKYRMMTILSMANGLKVTVSRRS 516 (516)
T ss_pred HHHHHHHHHHHhceeEecCC-CcceeeeeeEEecCCCEEEEEEeCC
Confidence 99999999999999997643 2344444567889999999999984
No 26
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.93 E-value=2e-25 Score=197.95 Aligned_cols=111 Identities=23% Similarity=0.356 Sum_probs=97.0
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccccCCCCceeecCCCCCCccccccccchhhHHHHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALLE 143 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~e 143 (191)
+++||.||+||.|+++.+++|||+++|+||++|+||||++.. ..+..++|||+|+|.|+| ++||.+|
T Consensus 379 ~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~---~~~~~~~pFG~G~r~C~G----------~~lA~~e 445 (490)
T PLN02302 379 EVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT---PKAGTFLPFGLGSRLCPG----------NDLAKLE 445 (490)
T ss_pred eECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC---CCCCCccCCCCCCcCCCc----------HHHHHHH
Confidence 789999999999999999999999999999999999999643 245679999999999999 9999999
Q ss_pred HHHHHHHHhhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEEccC
Q psy15775 144 EKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPRHK 189 (191)
Q Consensus 144 ~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~~ 189 (191)
++++++.|+++|++++.++..+.. ...++.|.+++.+++++|..
T Consensus 446 ~~~~la~ll~~f~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~ 489 (490)
T PLN02302 446 ISIFLHHFLLGYRLERLNPGCKVM--YLPHPRPKDNCLARITKVAS 489 (490)
T ss_pred HHHHHHHHHhcCeeEEcCCCCcce--eCCCCCCCCCceEEEEeccC
Confidence 999999999999999875533322 23458899999999999863
No 27
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.93 E-value=1.3e-25 Score=198.87 Aligned_cols=108 Identities=21% Similarity=0.458 Sum_probs=94.9
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccccCCCCceeecCCCCCCccccccccchhhHHHHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALLE 143 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~e 143 (191)
+++||.|||||.|+++.+++|+|+++|+||++|+||||++.. .+..++|||.|+|.|+| +++|++|
T Consensus 355 ~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~----~~~~~lpFG~G~r~C~G----------~~~A~~e 420 (463)
T PLN02196 355 EYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP----KPNTFMPFGNGTHSCPG----------NELAKLE 420 (463)
T ss_pred ccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC----CCCcccCcCCCCCCCch----------HHHHHHH
Confidence 689999999999999999999999999999999999998532 35689999999999999 9999999
Q ss_pred HHHHHHHHhhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEEc
Q psy15775 144 EKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPR 187 (191)
Q Consensus 144 ~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R 187 (191)
+++++|.|+++|++++.+++.+. ....+..|++++.|++++.
T Consensus 421 ~~~~la~ll~~f~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~ 462 (463)
T PLN02196 421 ISVLIHHLTTKYRWSIVGTSNGI--QYGPFALPQNGLPIALSRK 462 (463)
T ss_pred HHHHHHHHHHhcEEEEcCCCCce--EEcccccCCCCceEEEecC
Confidence 99999999999999987654333 3455677999999998864
No 28
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.93 E-value=1e-25 Score=200.94 Aligned_cols=115 Identities=25% Similarity=0.459 Sum_probs=96.3
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCcccc---CCCCceeecCCCCCCccccccccchhhHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQ---KRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFA 140 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~---~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A 140 (191)
+++||.||+||.|.+++|++||||++|+||++|+||||++++.. .....+|+|||.|+|.||| ++||
T Consensus 382 ~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG----------~~~A 451 (503)
T PLN02394 382 KLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPG----------IILA 451 (503)
T ss_pred ccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCC----------HHHH
Confidence 67899999999999999999999999999999999999965432 2245689999999999999 9999
Q ss_pred HHHHHHHHHHHhhhCEEEecCCCC--CeeEee-eEEEeeCCCceEEEEEcc
Q psy15775 141 LLEEKCVLASILRKFKVISLEKLD--DVTIMI-DLILRPASGVKVKLEPRH 188 (191)
Q Consensus 141 ~~e~~~~la~ll~~f~~~~~~~~~--~~~~~~-~~~~~p~~~~~v~~~~R~ 188 (191)
++|+++++|.|+++|++.+.++.. +..... ++++....++.|++++|.
T Consensus 452 ~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 502 (503)
T PLN02394 452 LPILGIVLGRLVQNFELLPPPGQSKIDVSEKGGQFSLHIAKHSTVVFKPRS 502 (503)
T ss_pred HHHHHHHHHHHHHHceeEeCCCCCcCccccccCceeeccCCCceEEeecCC
Confidence 999999999999999998765532 233233 356634448999999995
No 29
>KOG0684|consensus
Probab=99.92 E-value=6.8e-25 Score=189.71 Aligned_cols=165 Identities=27% Similarity=0.500 Sum_probs=135.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------C---C---------------CC-------------
Q psy15775 14 LTRDGKRHEENLKILHGFTRRVIEERKAARAAGG-----------V---R---------------EG------------- 51 (191)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~iI~~rr~~~~~~~-----------~---~---------------aG------------- 51 (191)
+.+..++..++.+.+.+....+|.+||+..+... + . ||
T Consensus 219 P~~~~r~~~ra~~~i~k~f~~~i~~rr~s~s~~~~dmlq~l~~~y~dg~~~te~e~a~~li~~LwA~Q~ns~ptsfW~l~ 298 (486)
T KOG0684|consen 219 PIPLLRRRDRARKKISKIFSKIILDRRASISKWDNDMLQSLMEKYKDGRPTTEEEIAGLLIGLLWAGQHNSSPTSFWTLA 298 (486)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhhcCCcCcHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 5677888889999999999999999998653210 0 0 33
Q ss_pred -------------cccccccCCC------------------------------e--------EEEc----CEEeCCCCEE
Q psy15775 52 -------------NDLDENFGEP------------------------------I--------LTAR----EYLLPVGCML 76 (191)
Q Consensus 52 -------------~Ei~~~~~~~------------------------------~--------i~~~----g~~ip~gt~v 76 (191)
+|+.+++|+. . +++. .|.||+|..|
T Consensus 299 yLl~~Pe~~~a~~eE~k~vlG~~~~~l~~d~L~~lplL~~~IkEtLRL~~p~~~~~R~v~~D~tv~~~~~~Y~Ip~G~~v 378 (486)
T KOG0684|consen 299 YLLRHPEAQKAVREEQKRVLGEKKEKLTYDQLKDLPLLDSCIKETLRLHPPAHSLMRKVHEDLTVPGSDGEYVIPKGDIV 378 (486)
T ss_pred HHhhCHHHHHHHHHHHHHHhhccCCCCCHHHHhcchHHHHHHHHHHhcCCchhhHHHhhccceeeccCCcceecCCCCEE
Confidence 8888888865 0 0333 4999999999
Q ss_pred EeehhhhcCCCCCCCCCCCcCCCCCCCccccC---CCC--ceeecCCCCCCccccccccchhhHHHHHHHHHHHHHHHHH
Q psy15775 77 NIEIVSLHRCADQYPNPEVFQPDNFLPENVQK---RHN--YSYIPFSAGPRNCIGEVVEDIIYESQKFALLEEKCVLASI 151 (191)
Q Consensus 77 ~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~---~~~--~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~e~~~~la~l 151 (191)
.+++..+|+||++|++|+.|+|+||+++++.. ... +.|+|||+|++.||| +.||.+|+|.++..+
T Consensus 379 alsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpG----------r~FA~~eIk~~~~l~ 448 (486)
T KOG0684|consen 379 ALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPG----------RSFAYLEIKQFISLL 448 (486)
T ss_pred EeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCc----------hHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877654 233 345999999999999 999999999999999
Q ss_pred hhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEEcc
Q psy15775 152 LRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPRH 188 (191)
Q Consensus 152 l~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~ 188 (191)
|+.|++++.+++.+......++..|.++++++.++|.
T Consensus 449 L~~fdleLid~~~P~~d~s~~v~~P~g~v~irYK~R~ 485 (486)
T KOG0684|consen 449 LRHFDLELIDGPFPEVDYSRMVMQPEGDVRIRYKRRP 485 (486)
T ss_pred HHHcceeecCCCCCCCCHHHhhcCCCCCceEEEeecC
Confidence 9999999998544333344669999999999999986
No 30
>PLN02966 cytochrome P450 83A1
Probab=99.91 E-value=2.2e-24 Score=192.62 Aligned_cols=114 Identities=27% Similarity=0.578 Sum_probs=91.1
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCC-CCCCCcCCCCCCCcccc-CCCCceeecCCCCCCccccccccchhhHHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQY-PNPEVFQPDNFLPENVQ-KRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFAL 141 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~~-~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~ 141 (191)
+++||.||+||.|++++|++||||++| +||++|+||||++++.. ...+..|+|||.|+|.|+| ++||+
T Consensus 380 ~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G----------~~~A~ 449 (502)
T PLN02966 380 KIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPG----------MRLGA 449 (502)
T ss_pred eEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCC----------HHHHH
Confidence 679999999999999999999999999 99999999999965432 2345689999999999999 99999
Q ss_pred HHHHHHHHHHhhhCEEEecCCCC--Ce--eEeeeEEEeeCCCceEEEEEccC
Q psy15775 142 LEEKCVLASILRKFKVISLEKLD--DV--TIMIDLILRPASGVKVKLEPRHK 189 (191)
Q Consensus 142 ~e~~~~la~ll~~f~~~~~~~~~--~~--~~~~~~~~~p~~~~~v~~~~R~~ 189 (191)
+|+++++|.||++|+|++.++.. .+ +...+++..+.. ++++++|+.
T Consensus 450 ~el~~~la~ll~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 499 (502)
T PLN02966 450 AMLEVPYANLLLNFNFKLPNGMKPDDINMDVMTGLAMHKSQ--HLKLVPEKV 499 (502)
T ss_pred HHHHHHHHHHHHhceeeCCCCCCcccCCcccccCeeeccCC--CeEEEEEeC
Confidence 99999999999999999765421 12 233455543443 445555543
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=1.8e-22 Score=176.75 Aligned_cols=103 Identities=29% Similarity=0.615 Sum_probs=90.7
Q ss_pred EEcCEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccccCCCCceeecCCCCCCccccccccchhhHHHHHHHHH
Q psy15775 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALLE 143 (191)
Q Consensus 64 ~~~g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~pFg~G~r~C~G~~~~~~~~~~~~~A~~e 143 (191)
+++|+.||+|+.|++++++.||||++|++|++|||+||. ..|+|||+|+|.|+| ..||++|
T Consensus 308 ~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~---------~~~l~FG~G~H~ClG----------~~lA~~E 368 (411)
T COG2124 308 ELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN---------NAHLPFGGGPHRCLG----------AALARLE 368 (411)
T ss_pred eeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC---------CCCcCCCCCCccccC----------HHHHHHH
Confidence 789999999999999999999999999999999999996 579999999999999 9999999
Q ss_pred HHHHHHHHhhhCEEEecCCCCCeeEeeeEEEeeCCCceEEEEEc
Q psy15775 144 EKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPR 187 (191)
Q Consensus 144 ~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R 187 (191)
++++++.|+++|++....+ . .......+..|.....+.++.+
T Consensus 369 ~~~~l~~ll~r~~~~~~~~-~-~~~~~~~~~~~~g~~~l~v~~~ 410 (411)
T COG2124 369 LKVALAELLRRFPLLLLAE-P-PPLVRRPTLVPRGGERLPVRRR 410 (411)
T ss_pred HHHHHHHHHHhCchhhcCC-C-CCccccccccCCCcceeeeecC
Confidence 9999999999999876655 2 3334466777777777777655
No 32
>PLN02648 allene oxide synthase
Probab=99.77 E-value=9.5e-19 Score=156.16 Aligned_cols=85 Identities=22% Similarity=0.404 Sum_probs=72.4
Q ss_pred CEEeCCCCEEEeehhhhcCCCCCCCCCCCcCCCCCCCccccCCCCceeecC---------CCCCCccccccccchhhHHH
Q psy15775 67 EYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPF---------SAGPRNCIGEVVEDIIYESQ 137 (191)
Q Consensus 67 g~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~pF---------g~G~r~C~G~~~~~~~~~~~ 137 (191)
||.||+|+.|+++.+.+||||++|+||++|||+||+++.... ...+++| |+|+|.|+| +
T Consensus 369 g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~~--~~~~~~f~~g~~~~~~G~G~R~C~G----------~ 436 (480)
T PLN02648 369 AFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGEK--LLKYVFWSNGRETESPTVGNKQCAG----------K 436 (480)
T ss_pred eEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCccc--cccccccCCCcccCCCCCCCccCcc----------H
Confidence 799999999999999999999999999999999998643221 1234444 667799999 9
Q ss_pred HHHHHHHHHHHHHHhhhCE-EEecCCC
Q psy15775 138 KFALLEEKCVLASILRKFK-VISLEKL 163 (191)
Q Consensus 138 ~~A~~e~~~~la~ll~~f~-~~~~~~~ 163 (191)
+||++|++++++.|+++|+ +++.++.
T Consensus 437 ~~A~~e~~~~la~Ll~~f~~~~l~~~~ 463 (480)
T PLN02648 437 DFVVLVARLFVAELFLRYDSFEIEVDT 463 (480)
T ss_pred HHHHHHHHHHHHHHHHHhCEEeecCCc
Confidence 9999999999999999998 8876553
No 33
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=45.18 E-value=16 Score=23.30 Aligned_cols=9 Identities=33% Similarity=1.043 Sum_probs=6.8
Q ss_pred CCCCCCCcc
Q psy15775 97 QPDNFLPEN 105 (191)
Q Consensus 97 ~P~R~l~~~ 105 (191)
||||||.-.
T Consensus 44 DPERWLP~~ 52 (59)
T PF08492_consen 44 DPERWLPKR 52 (59)
T ss_pred CccccCchh
Confidence 789998643
No 34
>KOG3262|consensus
Probab=22.79 E-value=24 Score=27.94 Aligned_cols=45 Identities=22% Similarity=0.467 Sum_probs=26.6
Q ss_pred cccccCCCeEEEcC--EEeCCCCEEEeehhhhcCCCCCCCCCCCcCC-CCCCCc
Q psy15775 54 LDENFGEPILTARE--YLLPVGCMLNIEIVSLHRCADQYPNPEVFQP-DNFLPE 104 (191)
Q Consensus 54 i~~~~~~~~i~~~g--~~ip~gt~v~~~~~~~~~~~~~~~~p~~F~P-~R~l~~ 104 (191)
|||+++ .+++ +.|....-|..+++. -.+.+|-+|+.+-| +|||..
T Consensus 94 VDEIfG----~i~d~~fsIK~~dgv~assfk--~g~k~fi~p~KllPl~RFLP~ 141 (215)
T KOG3262|consen 94 VDEIFG----PINDVHFSIKPSDGVQASSFK--PGDKLFIDPDKLLPLDRFLPQ 141 (215)
T ss_pred hhhhcc----cccccEEEEecCCCceeeccc--CCCeEEecccccCcHhhcCCC
Confidence 455555 3443 344444444444433 34567889999998 799964
No 35
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=21.82 E-value=39 Score=18.41 Aligned_cols=6 Identities=33% Similarity=1.171 Sum_probs=3.1
Q ss_pred cCCCCC
Q psy15775 96 FQPDNF 101 (191)
Q Consensus 96 F~P~R~ 101 (191)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 445554
No 36
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=20.18 E-value=44 Score=17.51 Aligned_cols=6 Identities=33% Similarity=1.171 Sum_probs=3.0
Q ss_pred cCCCCC
Q psy15775 96 FQPDNF 101 (191)
Q Consensus 96 F~P~R~ 101 (191)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 345554
Done!