RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15775
(191 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 146 bits (372), Expect = 1e-42
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGE 127
+P L + R + +P F PD F P + ++Y PFS G R+CIG
Sbjct: 335 VRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPGA--PKPRFTYFPFSLGHRSCIG- 391
Query: 128 VVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPR 187
Q+FA +E K V+A +L++ + L + L+P V L PR
Sbjct: 392 ---------QQFAQMEVKVVMAKLLQRLEF-RLVPGQRFGLQEQATLKPLDPVLCTLRPR 441
Query: 188 H 188
Sbjct: 442 G 442
Score = 57.6 bits (140), Expect = 2e-10
Identities = 8/55 (14%), Positives = 18/55 (32%)
Query: 1 MMRPWLWPSLIFGLTRDGKRHEENLKILHGFTRRVIEERKAARAAGGVREGNDLD 55
+ G + + E+++ L R ++ R+ A G + L
Sbjct: 175 TASRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKRGEEVPADILT 229
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 132 bits (334), Expect = 7e-37
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGE 127
Y + G + + I +HR + +P P F +NF + PF GPR C G
Sbjct: 386 YPVKKGTNIILNIGRMHRL-EFFPKPNEFTLENFAKN----VPYRYFQPFGFGPRGCAG- 439
Query: 128 VVEDIIYESQKFALLEEKCVLASILRKFKVISLE--KLDDVTIMIDLILRPA---SGVKV 182
+ A++ K +L ++LR+F V +L+ ++ + + DL L P + +++
Sbjct: 440 ---------KYIAMVMMKAILVTLLRRFHVKTLQGQCVESIQKIHDLSLHPDETKNMLEM 490
Query: 183 KLEPRH 188
PR+
Sbjct: 491 IFTPRN 496
Score = 56.6 bits (137), Expect = 5e-10
Identities = 9/50 (18%), Positives = 22/50 (44%)
Query: 1 MMRPWLWPSLIFGLTRDGKRHEENLKILHGFTRRVIEERKAARAAGGVRE 50
+ P + F ++ K++E+++K L +I E++ + E
Sbjct: 224 WQALLIKPDIFFKISWLYKKYEKSVKDLKDAIEVLIAEKRRRISTEEKLE 273
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 130 bits (329), Expect = 3e-36
Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 21/163 (12%)
Query: 31 FTRRVIEE--RKAARAAGGVREGNDLDENFGEPILTAREYLLPVGCMLNIEIVSLHRCAD 88
T VI E R R + G Y +P G + ++ R
Sbjct: 323 HTGNVIVEAMRLRPAVWVLTRRAVA-ESELGG-------YRIPAGADIIYSPYAIQRDPK 374
Query: 89 QYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALLEEKCVL 148
Y + F PD +LPE Y+ PFSAG R C F++ + +
Sbjct: 375 SYDDNLEFDPDRWLPERAANVPKYAMKPFSAGKRKCPS----------DHFSMAQLTLIT 424
Query: 149 ASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPRHKIN 191
A++ K++ + + + + + LRP + + H +
Sbjct: 425 AALATKYRFEQVAG-SNDAVRVGITLRPHDLLVRPVARHHHHH 466
Score = 41.1 bits (97), Expect = 1e-04
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 1 MMRPWLWPSLIFGLTRDGKRHEENLKILHGFTRRVIEERKAARAAGG 47
M+ P + +R + L LH +I ER+A+
Sbjct: 198 MVVPLGPLYRL--PLPANRRFNDALADLHLLVDEIIAERRASGQKPD 242
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 125 bits (316), Expect = 2e-34
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 11/121 (9%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGE 127
Y +P G + + R D + F PD +L +N ++Y+PF AG CIG
Sbjct: 345 YTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIG- 403
Query: 128 VVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPR 187
+ FA ++ K + +++LR ++ ++ +I P ++ + R
Sbjct: 404 ---------ENFAYVQIKTIWSTMLRLYEFDLIDGYFPTVNYTTMIHTP-ENPVIRYKRR 453
Query: 188 H 188
Sbjct: 454 S 454
Score = 33.8 bits (78), Expect = 0.023
Identities = 4/46 (8%), Positives = 15/46 (32%)
Query: 2 MRPWLWPSLIFGLTRDGKRHEENLKILHGFTRRVIEERKAARAAGG 47
W + +R + + + + I++R+ ++
Sbjct: 186 FSHAAWLLPGWLPLPSFRRRDRAHREIKDIFYKAIQKRRQSQEKID 231
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 116 bits (292), Expect = 6e-31
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGE 127
Y LP G +L + L D + + F+P+ +L + +K + ++++PF G R CIG
Sbjct: 375 YALPKGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQKE-KKINPFAHLPFGIGKRMCIG- 432
Query: 128 VVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPR 187
++ A L+ L I++K+ I + V ++ IL P+ + + PR
Sbjct: 433 ---------RRLAELQLHLALCWIIQKYD-IVATDNEPVEMLHLGILVPSRELPIAFRPR 482
Score = 33.4 bits (77), Expect = 0.037
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 3/37 (8%)
Query: 4 PWLWPSLIFGLTRDGKRHEENLKILHGFTRRVIEERK 40
L L T+ + H + + I+ R
Sbjct: 225 VELHKRL---NTKVWQAHTLAWDTIFKSVKPCIDNRL 258
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 115 bits (290), Expect = 1e-30
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGE 127
+P G ++ I +LHR + PE F P+ F +N Y Y PF +GPRNCIG
Sbjct: 364 MFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIG- 422
Query: 128 VVEDIIYESQKFALLEEKCVLASILRKFKVISLEK-LDDVTIMIDLILRPASGVKVKLEP 186
+FAL+ K L +L+ F ++ + + + +L+P V +K+E
Sbjct: 423 ---------MRFALMNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLLQPEKPVVLKVES 473
Query: 187 R 187
R
Sbjct: 474 R 474
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 114 bits (288), Expect = 2e-30
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 67 EYLLPVGCMLNIEIVSLHRCADQYP-NPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCI 125
EY L G L + I LHR + + E F+P+ F EN +++ PF G R CI
Sbjct: 344 EYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERF--ENPSAIPQHAFKPFGNGQRACI 401
Query: 126 GEVVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLE 185
G Q+FAL E VL +L+ F ++ I L L+P G VK +
Sbjct: 402 G----------QQFALHEATLVLGMMLKHFDF-EDHTNYELDIKETLTLKPE-GFVVKAK 449
Query: 186 PRH 188
+
Sbjct: 450 SKK 452
Score = 49.2 bits (118), Expect = 2e-07
Identities = 9/54 (16%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 1 MMRPWLWPSLIFGLTRDGKRHEENLKILHGFTRRVIEERKAARAAGGVREGNDL 54
M + + ++ +E++K+++ ++I +RKA+ + +DL
Sbjct: 185 MNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGE-----QSDDL 233
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 114 bits (288), Expect = 2e-30
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGE 127
Y++P ++ + I +L R + +PE F P +L ++ + + + F G R C+G
Sbjct: 367 YMIPAKTLVQVAIYALGREPTFFFDPENFDPTRWLSKD-KNITYFRNLGFGWGVRQCLG- 424
Query: 128 VVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPR 187
++ A LE L ++L F+ + ++ L DV +LIL P + P
Sbjct: 425 ---------RRIAELEMTIFLINMLENFR-VEIQHLSDVGTTFNLILMPEKPISFTFWPF 474
Query: 188 HK 189
++
Sbjct: 475 NQ 476
Score = 34.6 bits (80), Expect = 0.016
Identities = 6/55 (10%), Positives = 13/55 (23%), Gaps = 3/55 (5%)
Query: 1 MMRPWLWPSLIFGLTRDGKRHEENLKILHGFTRRVIEERKAARAAGGVREGNDLD 55
+ P L+ T+ K H ++ + G +
Sbjct: 209 NLPPDLFRLF---RTKTWKDHVAAWDVIFSKADIYTQNFYWELRQKGSVHHDYRG 260
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 113 bits (286), Expect = 3e-30
Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 12/127 (9%)
Query: 67 EYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLP-ENVQKRHNYSYIPFSAGPRNCI 125
+ + G ++ +R + +P+P F P + + +++IPF AG C+
Sbjct: 336 GHRIHEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCV 395
Query: 126 GEVVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDV-TIMIDLILRPASGVKVKL 184
G FA+++ K + + +LR+++ + + ++++ A V+
Sbjct: 396 GA----------AFAIMQIKAIFSVLLREYEFEMAQPPESYRNDHSKMVVQLAQPAAVRY 445
Query: 185 EPRHKIN 191
R ++
Sbjct: 446 RRRTGVH 452
Score = 37.7 bits (88), Expect = 0.001
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 12/75 (16%)
Query: 1 MMRPWLWPSLIFGLTRDGKRHEENLKILHGFTRRVIEERKAARAAGGVREGNDL------ 54
P + + +R +E L ++ R A + D+
Sbjct: 175 GTDPLAYV-DPYLPIESFRRRDEARNGLVALVADIMNGRIANPPTD--KSDRDMLDVLIA 231
Query: 55 --DENFGEPILTARE 67
E G P +A E
Sbjct: 232 VKAET-GTPRFSADE 245
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 112 bits (283), Expect = 5e-30
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGE 127
LP G L + R +P+ E F+P+ FL E + Y PF G R C+G
Sbjct: 284 DRLPPGTTLVLSPYVTQR--LHFPDGEAFRPERFLEER--GTPSGRYFPFGLGQRLCLG- 338
Query: 128 VVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPR 187
+ FALLE VL + R+F L+ L ++ + LRP G+ +
Sbjct: 339 ---------RDFALLEGPIVLRAFFRRF---RLDPLPFPRVLAQVTLRPEGGLPARPREE 386
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 111 bits (280), Expect = 2e-29
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 17/122 (13%)
Query: 67 EYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIG 126
Y++P G ++ + H + +P P + P+ ++ ++I F AG CIG
Sbjct: 344 SYVVPKGDIIACSPLLSHHDEEAFPEPRRWDPERD------EKVEGAFIGFGAGVHKCIG 397
Query: 127 EVVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRP-ASGVKVKLE 185
QKF LL+ K +LA+ R + L +++ P AS +VK
Sbjct: 398 ----------QKFGLLQVKTILATAFRSYDFQLLRDEVPDPDYHTMVVGPTASQCRVKYI 447
Query: 186 PR 187
R
Sbjct: 448 RR 449
Score = 43.4 bits (103), Expect = 1e-05
Identities = 10/52 (19%), Positives = 13/52 (25%), Gaps = 1/52 (1%)
Query: 3 RPWLWPSLIFGLTRDGKRHEENLKILHGFTRRVIEERKAARAAGGVREGNDL 54
P L+ R E L +I RK +DL
Sbjct: 184 AAVFLPILLKLPLPQSARCHEARTELQKILSEIIIARKEEEVNKD-SSTSDL 234
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 107 bits (270), Expect = 6e-28
Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 34/183 (18%)
Query: 19 KRHEENLKILHG------------FTRRVIEE--RKAARAAGGVREGNDLDENFGEPILT 64
+ +E K+ + +V++E R GG RE D F
Sbjct: 279 RVRQEQNKLQLSQELTAETLKKMPYLDQVLQEVLRLIPPVGGGFRELIQ-DCQFQG---- 333
Query: 65 AREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQ-KRHNYSYIPFSAGPRN 123
+ P G +++ +I H D YP+PE F P+ F P+ ++++PF G R
Sbjct: 334 ---FHFPKGWLVSYQISQTHADPDLYPDPEKFDPERFTPDGSATHNPPFAHVPFGGGLRE 390
Query: 124 CIGEVVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVK 183
C+G ++FA LE K ++++F +L ++ +++ RP ++VK
Sbjct: 391 CLG----------KEFARLEMKLFATRLIQQFDW-TLLPGQNLELVVTPSPRPKDNLRVK 439
Query: 184 LEP 186
L
Sbjct: 440 LHS 442
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 104 bits (261), Expect = 1e-26
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPF-------SAG 120
+ + G ML R + + F P+ F+ E +K + + G
Sbjct: 381 FKVKAGEMLYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETPTVG 440
Query: 121 PRNCIGEVVEDIIYESQKFALLEEKCVLASILRKFKVISLEK 162
+ C G + F +L + + I R++ +E
Sbjct: 441 NKQCAG----------KDFVVLVARLFVIEIFRRYDSFDIEV 472
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 103 bits (258), Expect = 2e-26
Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 23/123 (18%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGP------ 121
+ + G ML + + PE + PD F+ + Y+ +S GP
Sbjct: 364 FEVKKGEMLFGYQPFATKDPKVFDRPEEYVPDRFVGDG---EALLKYVWWSNGPETESPT 420
Query: 122 ---RNCIGEVVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDD-VTIMIDLILRPA 177
+ C G + F +L + + + R++ +E + + + L
Sbjct: 421 VENKQCAG----------KDFVVLITRLFVIELFRRYDSFEIELGESPLGAAVTLTFLKR 470
Query: 178 SGV 180
+ +
Sbjct: 471 ASI 473
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 97.4 bits (243), Expect = 4e-24
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 26/138 (18%)
Query: 67 EYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRH---------NYSYIPF 117
Y + ++ + +H + YP+P F+ D +L EN + + Y Y+PF
Sbjct: 361 SYNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTKTTFYCNGLKLKYYYMPF 420
Query: 118 SAGPRNCIGEVVEDIIYESQKFALLEEKCVLASILRKFKV------ISLEKLDDVTIMID 171
+G C G FA+ E K L +L F++ L D +
Sbjct: 421 GSGATICPGR----------LFAIHEIKQFLILMLSYFELELIEGQAKCPPL-DQSRAGL 469
Query: 172 LILRPASGVKVKLEPRHK 189
IL P + ++ K + +H
Sbjct: 470 GILPPLNDIEFKYKFKHH 487
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 96.0 bits (239), Expect = 1e-23
Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 25/143 (17%)
Query: 61 PILTAREYLLPVGCMLNIE-IVSLHRCADQYPNPEVFQPDNFLPEN---------VQKRH 110
P+ RE+ L G L + +S R + Y +PEVF+ + FL + KR
Sbjct: 358 PMADGREFNLRRGDRLLLFPFLSPQRDPEIYTDPEVFKYNRFLNPDGSEKKDFYKDGKRL 417
Query: 111 NYSYIPFSAGPRNCIGEVVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLD-----D 165
+P+ AG +C+G +A+ K + +L + + D
Sbjct: 418 KNYNMPWGAGHNHCLGR----------SYAVNSIKQFVFLVLVHLDLELINADVEIPEFD 467
Query: 166 VTIMIDLILRPASGVKVKLEPRH 188
++ +++P V V+ R
Sbjct: 468 LSRYGFGLMQPEHDVPVRYRIRP 490
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 85.5 bits (212), Expect = 4e-20
Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 18/124 (14%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGP----RN 123
P G + +++ + A + +P+ F+P+ F ++++IP G
Sbjct: 304 MAFPEGRQVVLDLYGSNHDAATWADPQEFRPERFRAW---DEDSFNFIPQGGGDHYLGHR 360
Query: 124 CIGEVVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVK 183
C GE L K ++ + + D L P SG ++
Sbjct: 361 CPGE----------WIVLAIMKVAAHLLVNAMR-YDVPDQDLSIDFARLPALPKSGFVMR 409
Query: 184 LEPR 187
Sbjct: 410 NVHI 413
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 84.0 bits (208), Expect = 2e-19
Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 18/124 (14%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGP----RN 123
G + +++ + + +P+ F+P+ F + + + IP G
Sbjct: 306 CEFKKGTSVLLDLYGTNHDPRLWDHPDEFRPERFAER---EENLFDMIPQGGGHAEKGHR 362
Query: 124 CIGEVVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVK 183
C GE + K L ++ + + + + + + P SG +
Sbjct: 363 CPGE----------GITIEVMKASLDFLVHQIE-YDVPEQSLHYSLARMPSLPESGFVMS 411
Query: 184 LEPR 187
R
Sbjct: 412 GIRR 415
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 80.4 bits (199), Expect = 3e-18
Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 25/142 (17%)
Query: 61 PILTAREYLLPVGCMLNI-EIVSLHRCADQYPNPEVFQPDNFLPENVQ---------KRH 110
+ +EY L G L + +S + PE+FQ D FL + R
Sbjct: 339 CLSNGQEYHLRRGDRLCVFPFISPQMDPQIHQQPEMFQFDRFLNADRTEKKDFFKNGARV 398
Query: 111 NYSYIPFSAGPRNCIGEVVEDIIYESQKFALLEEKCVLASILRKFKV-----ISLEKLDD 165
Y +P+ C G FA+ K ++ +IL +F V + L D
Sbjct: 399 KYPSVPWGTEDNLCPGR----------HFAVHAIKELVFTILTRFDVELCDKNATVPLVD 448
Query: 166 VTIMIDLILRPASGVKVKLEPR 187
+ IL+PA ++++ R
Sbjct: 449 PSRYGFGILQPAGDLEIRYRIR 470
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 67.2 bits (165), Expect = 1e-13
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 66 REYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCI 125
R Y +P G + + S+H + +PEVF P+ FL + + +PFS G R+C+
Sbjct: 364 RGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCL 423
Query: 126 GEVVEDIIYESQKFALLEEKCVLASILRKFKVISLE-KLDDVTIMIDLILRPASGVKVKL 184
GE + A +E ++L++F + + D+ + + L+P +
Sbjct: 424 GEHL----------ARMEMFLFFTALLQRFHLHFPHELVPDLKPRLGMTLQPQP-YLICA 472
Query: 185 EPRHK 189
E RH
Sbjct: 473 ERRHH 477
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 66.4 bits (163), Expect = 3e-13
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 13/125 (10%)
Query: 66 REYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCI 125
+ + +P G L + S+ + + P F P++FL +++PFSAG R C+
Sbjct: 363 QGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACL 422
Query: 126 GEVVEDIIYESQKFALLEEKCVLASILRKFKVISLE--KLDDVTIMIDLILRPASGVKVK 183
GE + A +E S+L+ F + ++ P+ ++
Sbjct: 423 GEPL----------ARMELFLFFTSLLQHFSFSVPTGQPRPSHHGVFAFLVSPSP-YELC 471
Query: 184 LEPRH 188
PRH
Sbjct: 472 AVPRH 476
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 64.1 bits (157), Expect = 1e-12
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 66 REYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPEN--VQKRHNYSYIPFSAGPRN 123
E+ + G + I + +LH ++ P+ F P+ FL + SY+PF AGPR+
Sbjct: 364 GEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRS 423
Query: 124 CIGEVVEDIIYESQKFALLEEKCVLASILRKFKVISLE--KLDDVTIMIDLILRPASGVK 181
CIGE++ A E ++A +L++F + + +L + + ++ S K
Sbjct: 424 CIGEIL----------ARQELFLIMAWLLQRFDLEVPDDGQLPSLEGIPKVVFLIDS-FK 472
Query: 182 VKLEPRH 188
VK++ R
Sbjct: 473 VKIKVRQ 479
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 63.4 bits (155), Expect = 3e-12
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 14/126 (11%)
Query: 66 REYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPEN--VQKRHNYSYIPFSAGPRN 123
Y +P ++ + S++ ++PNPE F P FL ++ + K + FS G R
Sbjct: 370 LGYHIPKDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRR 429
Query: 124 CIGEVVEDIIYESQKFALLEEKCVLASILRKFKVISLEK-LDDVTIMIDLILRPASGVKV 182
CIGE + + ++ ++ + + + + L ++P S KV
Sbjct: 430 CIGEEL----------SKMQLFLFISILAHQCDFRANPNEPAKMNFSYGLTIKPKS-FKV 478
Query: 183 KLEPRH 188
+ R
Sbjct: 479 NVTLRE 484
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 62.6 bits (153), Expect = 5e-12
Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 21/133 (15%)
Query: 66 REYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPEN---VQKRHNYSYIPFSAGPR 122
+ +P C + + ++ + + +P F+P+ FL + + K + + F G R
Sbjct: 373 NGFYIPKKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKR 432
Query: 123 NCIGEVVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMID----LILRPAS 178
CIGEV+ A E LA +L++ V + + L ++ A
Sbjct: 433 RCIGEVL----------AKWEIFLFLAILLQQL---EFSVPPGVKVDLTPIYGLTMKHAR 479
Query: 179 GVKVKLEPRHKIN 191
+ R IN
Sbjct: 480 -CEHVQARRFSIN 491
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 61.5 bits (150), Expect = 1e-11
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 25/130 (19%)
Query: 66 REYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCI 125
Y +P G ++ + H + P F+PD FL N S + F G R C+
Sbjct: 373 FGYDIPEGMVVIPNLQGAHLDETVWEQPHEFRPDRFLEPG----ANPSALAFGCGARVCL 428
Query: 126 GEVVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGV----- 180
GE + A LE VLA +L+ F + V + L P GV
Sbjct: 429 GESL----------ARLELFVVLARLLQAFTL----LPPPVGALPSLQPDPYCGVNLKVQ 474
Query: 181 --KVKLEPRH 188
+V+L+PR
Sbjct: 475 PFQVRLQPRG 484
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 61.0 bits (149), Expect = 2e-11
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 66 REYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCI 125
R YL+P G + I + S+ ++PNPE+F P +FL E + + ++PFSAG R C+
Sbjct: 360 RNYLIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICV 419
Query: 126 GEVVEDIIYESQKFALLEEKCVLASILRKFKVISLE---KLDDVTIMIDLILRPASGVKV 182
GE + A +E L SIL+ F + SL LD ++ P ++
Sbjct: 420 GEAL----------AGMELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASVPPF-YQL 468
Query: 183 KLEPRH 188
P H
Sbjct: 469 CFIPIH 474
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 58.7 bits (143), Expect = 1e-10
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 14/126 (11%)
Query: 66 REYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCI 125
R Y++P + + S + P F P +FL N + N ++PFS G R C+
Sbjct: 359 RGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICL 418
Query: 126 GEVVEDIIYESQKFALLEEKCVLASILRKFKVISLE---KLDDVTIMIDLILRPASGVKV 182
GE + A E +IL+ F + S +D + P S ++
Sbjct: 419 GEGI----------ARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPS-YQI 467
Query: 183 KLEPRH 188
+ RH
Sbjct: 468 RFLARH 473
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 58.7 bits (143), Expect = 1e-10
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
Query: 66 REYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCI 125
R++ LP G + + S+ R + NP+ F P +FL E Q + + +++PFS G RNC
Sbjct: 359 RDFFLPKGTEVYPMLGSVLRDPSFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCF 418
Query: 126 GEVVEDIIYESQKFALLEEKCVLASILRKFKVISLE---KLDDVTIMIDLILRPASGVKV 182
GE + A +E ++++ F++ S + +D + P + +
Sbjct: 419 GEGL----------ARMELFLFFTTVMQNFRLKSSQSPKDIDVSPKHVGFATIPRN-YTM 467
Query: 183 KLEPRH 188
PRH
Sbjct: 468 SFLPRH 473
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 57.9 bits (141), Expect = 2e-10
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 14/125 (11%)
Query: 66 REYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCI 125
R YL+P G ++ + S+ ++P+PE F+P++FL EN + +++ + PFS G R C
Sbjct: 358 RGYLIPKGTVVVPTLDSVLYDNQEFPDPEKFKPEHFLNENGKFKYSDYFKPFSTGKRVCA 417
Query: 126 GEVVEDIIYESQKFALLEEKCVLASILRKFKVISLE---KLDDVTIMIDLILRPASGVKV 182
GE + A +E +L +IL+ F + L +D I I P K+
Sbjct: 418 GEGL----------ARMELFLLLCAILQHFNLKPLVDPKDIDLSPIHIGFGCIPPR-YKL 466
Query: 183 KLEPR 187
+ PR
Sbjct: 467 CVIPR 471
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 3e-05
Identities = 45/213 (21%), Positives = 70/213 (32%), Gaps = 72/213 (33%)
Query: 7 WPSLIFGLT----------RDGKRHEENLKILHGFTRR---VIEERKAARA-AGGVREGN 52
P LI G+ G E L G T ++ A A A
Sbjct: 238 CP-LI-GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV----TAVAIAET----- 286
Query: 53 DLDENFGEPILTAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNY 112
D E+F + A L +G RC + YPN + P + L ++++
Sbjct: 287 DSWESFFVSVRKAITVLFFIGV----------RCYEAYPNTSL--PPSILEDSLENNEG- 333
Query: 113 SYIPFSAGP----RNCIGEVVEDIIYESQKFALLEEKCVLASIL---RKFKVI-----SL 160
+P P N E V+D + ++ L K V S++ + V+ SL
Sbjct: 334 --VP---SPMLSISNLTQEQVQDYVNKTNSH-LPAGKQVEISLVNGAKNL-VVSGPPQSL 386
Query: 161 EKLDDVTIMIDLILRPASGVKVKLEP---RHKI 190
L +L LR K K + +I
Sbjct: 387 YGL-------NLTLR-----KAKAPSGLDQSRI 407
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.006
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 79 EIVSLHR-CADQYPNPEVFQPDNFLPENVQKRHNYSY 114
+LHR D Y P+ F D+ +P + Y Y
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLD---QYFY 474
Score = 34.4 bits (78), Expect = 0.021
Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 41/136 (30%)
Query: 11 IFGLTRDGKRHEENLKILHGFTRRVIEERKAARAAGGVREGNDLDENFGEPILTAREYLL 70
I + + K EN LH R +++ + + +DL +Y
Sbjct: 428 IPSIYLELKVKLENEYALH---RSIVDHYNIPKT----FDSDDL------IPPYLDQYFY 474
Query: 71 PVGCMLNIEIVSLH-RCADQYPN----PEVFQPDNFLPENVQK-RHNYSYIPFSAGPRNC 124
+ H + + VF FL QK RH + N
Sbjct: 475 --------SHIGHHLKNIEHPERMTLFRMVFLDFRFLE---QKIRH-------DSTAWNA 516
Query: 125 IGEVVEDI----IYES 136
G ++ + Y+
Sbjct: 517 SGSILNTLQQLKFYKP 532
Score = 31.7 bits (71), Expect = 0.15
Identities = 25/186 (13%), Positives = 56/186 (30%), Gaps = 47/186 (25%)
Query: 4 PWLWPSLIFGLTRDGKRHEENLKILHGFTRRVIEERKAARAAGGVREGNDLDENFGEPIL 63
+L + E + TR IE+R R + + + +P L
Sbjct: 92 KFLMSPI----------KTEQ-RQPSMMTRMYIEQRD--RLYNDNQVFAKYNVSRLQPYL 138
Query: 64 TAREYLLPV------------GC---MLNIEIVSLHRCADQYPNPEVF-------QPDNF 101
R+ LL + G + +++ ++ + ++F
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPET 197
Query: 102 LPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALLEEKCVLASILR-KFKVISL 160
+ E +QK +++ + + K + + L +L+ K L
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDH----------SSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 161 EKLDDV 166
L +V
Sbjct: 248 LVLLNV 253
Score = 28.7 bits (63), Expect = 1.4
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 28/93 (30%)
Query: 94 EVFQPDNF---------LPENVQKRHNYSYIPFSAGPR---NCIGEVVEDIIYESQKFAL 141
V +P + P + IP + I V ++ + K++L
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAH-------IPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 142 LEE-----KCVLASILRKFKVISLEKLDDVTIM 169
+E+ + SI + K KL++ +
Sbjct: 417 VEKQPKESTISIPSIYLELK----VKLENEYAL 445
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 3.6
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 16/44 (36%)
Query: 144 EKCVLASILRKFKVISLEKL--DDVTIMIDLILRPASGVKVKLE 185
EK ++ +K + SL KL DD PA +K +E
Sbjct: 18 EK---QAL-KKLQA-SL-KLYADDSA--------PALAIKATME 47
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 3.7
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 115 IPFSAGPRNCIGEVVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLIL 174
IPF+A P G +E I +S+ + + +L +ILR + +K +
Sbjct: 570 IPFAAIPEQ--GIELEHI--DSK--SEFAHRIMLTNILRMMGCVKKQKSA-----RGIET 618
Query: 175 RPASGVKVKLEPRH 188
RPA V + + P H
Sbjct: 619 RPAQ-VILPMSPNH 631
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid
motif, transferase; 2.30A {Escherichia coli}
Length = 190
Score = 26.6 bits (59), Expect = 4.7
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 18/62 (29%)
Query: 30 GFTRRVIEERKAARAAGGVREGNDL-------DENFGEPILTA-----REYLLPVGCMLN 77
G + V+ + A G DL D G +L +Y LP ++
Sbjct: 116 GLSSLVVLDSAERTAGG-----KDLRPALKIVDAQ-GNDVLIPGTDMPAQYFLPGKAIVQ 169
Query: 78 IE 79
+E
Sbjct: 170 LE 171
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 589
Score = 26.6 bits (59), Expect = 7.1
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 1 MMRPWLWPSLIFGLTRDGKRHEENLKI 27
+ R L P L+ + + ++ LK+
Sbjct: 449 VARTTLLPGLLKTIAAN-RKMPLPLKL 474
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.427
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,077,699
Number of extensions: 185603
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 50
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.4 bits)