RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15775
(191 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 106 bits (265), Expect = 7e-28
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGE 127
+P G ++ I +LHR + PE F P+ F +N Y Y PF +GPRNCIG
Sbjct: 359 MFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIG- 417
Query: 128 VVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLD-DVTIMIDLILRPASGVKVKLEP 186
+FAL+ K L +L+ F ++ + + + +L+P V +K+E
Sbjct: 418 ---------MRFALMNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLLQPEKPVVLKVES 468
Query: 187 R 187
R
Sbjct: 469 R 469
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 99.8 bits (247), Expect = 2e-25
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 66 REYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCI 125
R Y +P G + + S+H + +PEVF P+ FL + + +PFS G R+C+
Sbjct: 351 RGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCL 410
Query: 126 GEVVEDIIYESQKFALLEEKCVLASILRKFKV-ISLEKLDDVTIMIDLILRPASGVKVKL 184
G + A +E ++L++F + E + D+ + + L+P +
Sbjct: 411 G----------EHLARMEMFLFFTALLQRFHLHFPHELVPDLKPRLGMTLQPQ-PYLICA 459
Query: 185 EPRH 188
E RH
Sbjct: 460 ERRH 463
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 99.0 bits (245), Expect = 3e-25
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 12/125 (9%)
Query: 66 REYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCI 125
R Y++P + + S + P F P +FL N + N ++PFS G R C+
Sbjct: 351 RGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICL 410
Query: 126 GEVVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDV--TIMIDLILRPASGVKVK 183
G + A E +IL+ F + S +D+ T + +++
Sbjct: 411 G----------EGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQIR 460
Query: 184 LEPRH 188
RH
Sbjct: 461 FLARH 465
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 96.0 bits (237), Expect = 5e-24
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 66 REYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCI 125
R YL+P G + I + S+ ++PNPE+F P +FL E + + ++PFSAG R C+
Sbjct: 352 RNYLIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICV 411
Query: 126 GEVVEDIIYESQKFALLEEKCVLASILRKFKVISL---EKLDDVTIMIDLILRPASGVKV 182
G + A +E L SIL+ F + SL + LD ++ P ++
Sbjct: 412 G----------EALAGMELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASVPPF-YQL 460
Query: 183 KLEPRH 188
P H
Sbjct: 461 CFIPIH 466
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 91.9 bits (226), Expect = 1e-22
Identities = 22/122 (18%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFL-PENVQKRHNYSYIPFSAGPRNCIG 126
+ + G ++ +R + +P+P F P + P + +++IPF AG C+G
Sbjct: 333 HRIHEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVG 392
Query: 127 EVVEDIIYESQKFALLEEKCVLASILRKFKV-ISLEKLDDVTIMIDLILRPASGVKVKLE 185
FA+++ K + + +LR+++ ++ ++++ A V+
Sbjct: 393 ----------AAFAIMQIKAIFSVLLREYEFEMAQPPESYRNDHSKMVVQLAQPAAVRYR 442
Query: 186 PR 187
R
Sbjct: 443 RR 444
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 81.4 bits (199), Expect = 4e-19
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 84 HRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFALLE 143
+P+ E F+P+ FL E + Y PF G R C+G + FALLE
Sbjct: 298 VTQRLHFPDGEAFRPERFLEER--GTPSGRYFPFGLGQRLCLG----------RDFALLE 345
Query: 144 EKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKL 184
VL + R+F+ L+ L ++ + LRP G+ +
Sbjct: 346 GPIVLRAFFRRFR---LDPLPFPRVLAQVTLRPEGGLPARP 383
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 81.2 bits (199), Expect = 5e-19
Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 18/124 (14%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAG----PRN 123
G + +++ + + +P+ F+P+ F + + IP G
Sbjct: 301 CEFKKGTSVLLDLYGTNHDPRLWDHPDEFRPERFAERE---ENLFDMIPQGGGHAEKGHR 357
Query: 124 CIGEVVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVK 183
C G + + K L ++ + + + + + + P SG +
Sbjct: 358 CPG----------EGITIEVMKASLDFLVHQIE-YDVPEQSLHYSLARMPSLPESGFVMS 406
Query: 184 LEPR 187
R
Sbjct: 407 GIRR 410
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 79.1 bits (193), Expect = 3e-18
Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRN 123
R + G + + S +R + + NP+ F R ++ F G
Sbjct: 326 EVRGQNIKRGDRIMLSYPSANRDEEVFSNPDEFDIT---------RFPNRHLGFGWGAHM 376
Query: 124 CIGEVVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVK 183
C+G Q A LE K +L K K + L ++ + V ++
Sbjct: 377 CLG----------QHLAKLEMKIFFEELLPKLKSVELS--GPPRLVATNFVGGPKNVPIR 424
Query: 184 LEP 186
Sbjct: 425 FTK 427
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 79.0 bits (193), Expect = 4e-18
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQY-PNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIG 126
Y L G L + I LHR + + E F+P+ F + +++ PF G R CIG
Sbjct: 343 YPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPS--AIPQHAFKPFGNGQRACIG 400
Query: 127 EVVEDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEP 186
Q+FAL E VL +L+ F ++ I L L+P G VK +
Sbjct: 401 ----------QQFALHEATLVLGMMLKHFD-FEDHTNYELDIKETLTLKP-EGFVVKAKS 448
Query: 187 R 187
+
Sbjct: 449 K 449
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 78.7 bits (192), Expect = 4e-18
Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 20/117 (17%)
Query: 70 LPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVV 129
+P + + + +R Q+P+P F R ++ F G C+G
Sbjct: 304 IPQYSTVLVANGAANRDPKQFPDPHRFDVT---------RDTRGHLSFGQGIHFCMG--- 351
Query: 130 EDIIYESQKFALLEEKCVLASILRKFKVISL-EKLDDVTIMIDLILRPASGVKVKLE 185
+ A LE + L ++ +F +SL DDV L+LR + V+L+
Sbjct: 352 -------RPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLRGIDHLPVRLD 401
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 77.5 bits (189), Expect = 1e-17
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 20/127 (15%)
Query: 60 EPILTAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSA 119
I + G + + +R D + + + F R ++ F
Sbjct: 293 TDIALPDGRTIARGEPILASYAAANRHPDWHEDADTFDAT---------RTVKEHLAFGH 343
Query: 120 GPRNCIGEVVEDIIYESQKFALLEEKCVLASILRKFKVISL-EKLDDVTIMIDLILRPAS 178
G C+G A +E L S+ +F + L + +++ + LI
Sbjct: 344 GVHFCLG----------APLARMEVTLALESLFGRFPDLRLADPAEELPPVPSLISNGHQ 393
Query: 179 GVKVKLE 185
+ V L
Sbjct: 394 RLPVLLH 400
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 72.6 bits (176), Expect = 6e-16
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 21/116 (18%)
Query: 71 PVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVE 130
G M+ + I S R + P+VF R + + + GP C G
Sbjct: 306 KKGEMVFLLIPSALRDGTVFSRPDVFDVR---------RDTSASLAYGRGPHVCPG---- 352
Query: 131 DIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEP 186
A LE + + +I R+F + L+ + R + V L+P
Sbjct: 353 ------VSLARLEAEIAVGTIFRRFPEMKLK--ETPVFGYHPAFRNIESLNVILKP 400
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 71.4 bits (173), Expect = 2e-15
Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 16/109 (14%)
Query: 83 LHRCADQYPNPEVF--QPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIYESQKFA 140
+ + D F + +I F GP C G +
Sbjct: 308 IVSYGALGRDERAHGPTADRFDLT---RTSGNRHISFGHGPHVCPG----------AALS 354
Query: 141 LLEEKCVLASILRKFKVISL-EKLDDVTIMIDLILRPASGVKVKLEPRH 188
+E L ++ +F + L ++ + + V+L H
Sbjct: 355 RMEAGVALPALYARFPHLDLAVPAAELRNKPVVTQNDLFELPVRLAHHH 403
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 69.0 bits (167), Expect = 9e-15
Identities = 16/117 (13%), Positives = 28/117 (23%), Gaps = 20/117 (17%)
Query: 71 PVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVE 130
G + + + + P R S+ F G C+G
Sbjct: 303 KKGDQILLPQMLSGLDERENACPMHVDFS---------RQKVSHTTFGHGSHLCLG---- 349
Query: 131 DIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLEPR 187
Q A E L L + S+ I+ + + +P
Sbjct: 350 ------QHLARREIIVTLKEWLTRIPDFSIAP-GAQIQHKSGIVSGVQALPLVWDPA 399
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 67.2 bits (162), Expect = 5e-14
Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 20/122 (16%)
Query: 64 TAREYLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRN 123
+ + G + + ++ +R + +P+P+ + R ++ F GP
Sbjct: 295 EIKGVRIRAGDAVYVSYLAANRDPEVFPDPDRIDFE---------RSPNPHVSFGFGPHY 345
Query: 124 CIGEVVEDIIYESQKFALLEEKCVLASILRKFKVISL-EKLDDVTIMIDLILRPASGVKV 182
C G A LE + ++ ++L + + L +DV ++R + V
Sbjct: 346 CPG----------GMLARLESELLVDAVLDRVPGLKLAVAPEDVPFKKGALIRGPEALPV 395
Query: 183 KL 184
Sbjct: 396 TW 397
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 67.1 bits (162), Expect = 5e-14
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 20/116 (17%)
Query: 68 YLLPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGE 127
+ G + + + +R P+ + R ++ F G +C+G
Sbjct: 296 QEIKKGDSVICSLPAANRDPALAPDVDRLDVT---------REPIPHVAFGHGVHHCLG- 345
Query: 128 VVEDIIYESQKFALLEEKCVLASILRKFKVISL-EKLDDVTIMIDLILRPASGVKV 182
A LE + V + R+F + L + D + + + V
Sbjct: 346 ---------AALARLELRTVFTELWRRFPALRLADPAQDTEFRLTTPAYGLTELMV 392
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 66.0 bits (159), Expect = 1e-13
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 17/90 (18%)
Query: 71 PVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVE 130
+ S +R + + NP+ F + P + F G CI
Sbjct: 302 RANEGIIASNQSANRDEEVFENPDEFNMNRKWPPQ-------DPLGFGFGDHRCIA---- 350
Query: 131 DIIYESQKFALLEEKCVLASILRKFKVISL 160
+ A E V +++ +KF + +
Sbjct: 351 ------EHLAKAELTTVFSTLYQKFPDLKV 374
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 64.4 bits (155), Expect = 4e-13
Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 19/113 (16%)
Query: 71 PVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVE 130
G ++ + + + + +PNP + D + S++ F G C G
Sbjct: 299 RKGELVLVLLEGANFDPEHFPNPGSIELDRP--------NPTSHLAFGRGQHFCPG---- 346
Query: 131 DIIYESQKFALLEEKCVLASILRKFKVISL-EKLDDVTIMIDLILRPASGVKV 182
+ + ++L+K + L +D + R + V
Sbjct: 347 ------SALGRRHAQIGIEALLKKMPGVDLAVPIDQLVWRTRFQRRIPERLPV 393
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 63.3 bits (152), Expect = 9e-13
Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 71 PVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVE 130
G + + I S +R + + + E F PD R+ ++ F +G C+G
Sbjct: 273 EEGEYVRVWIASANRDEEVFHDGEKFIPD---------RNPNPHLSFGSGIHLCLG---- 319
Query: 131 DIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLE 185
A LE + + ++F+ I ++ D + + +L + V+L+
Sbjct: 320 ------APLARLEARIAIEEFSKRFRHI---EILDTEKVPNEVLNGYKRLVVRLK 365
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 63.2 bits (152), Expect = 1e-12
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 20/106 (18%)
Query: 74 CMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDII 133
+ I+ +R P+P+V + R S + F G C+G
Sbjct: 312 DYVLCSILMANRDEALTPDPDVLDAN---------RAAVSDVGFGHGIHYCVG------- 355
Query: 134 YESQKFALLEEKCVLASILRKFKVISL-EKLDDVTIMIDLILRPAS 178
A + ++ R+F + L +++V + P
Sbjct: 356 ---AALARSMLRMAYQTLWRRFPGLRLAVPIEEVKYRSAFVDCPDQ 398
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 62.9 bits (151), Expect = 1e-12
Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 22/116 (18%)
Query: 70 LPVGCMLNIEIVSLHRCADQYPNPEVFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVV 129
+ G ++ + I S +R + + +P+ F PD R ++ F +G C+G
Sbjct: 272 IDEGELVRVWIASANRDEEVFKDPDSFIPD---------RTPNPHLSFGSGIHLCLG--- 319
Query: 130 EDIIYESQKFALLEEKCVLASILRKFKVISLEKLDDVTIMIDLILRPASGVKVKLE 185
A LE + L +KF+V + K + + + +L + V++E
Sbjct: 320 -------APLARLEARIALEEFAKKFRVKEIVKKEKID---NEVLNGYRKLVVRVE 365
>d1wsaa_ c.88.1.1 (A:) Asparaginase type II {Wolinella succinogenes
[TaxId: 844]}
Length = 328
Score = 25.9 bits (56), Expect = 3.9
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 95 VFQPDNFLPENVQKRHNYSYIPFSAGPRNCIGEVVEDIIY 134
V + K + + F++ IG V +
Sbjct: 151 VMNDEIHAAREATKLNTTAVNAFASPNTGKIGTVYYGKVE 190
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.141 0.427
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 757,096
Number of extensions: 35223
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 23
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)