BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1578
(440 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5EHU7|ERGI2_GECJA Endoplasmic reticulum-Golgi intermediate compartment protein 2
OS=Gecko japonicus GN=ERGIC2 PE=2 SV=1
Length = 377
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/152 (46%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
Query: 165 LGADIIDSTNQNMILFGELQEEDTWFELEPAQKSYFDSMQHVNSYLQEEFHAVQNLLWKS 224
+GAD++D + L E F+L P QK + +Q + S LQEE H++Q++++KS
Sbjct: 89 VGADVLDLAETMVASTDGLVYEPAIFDLSPQQKEWQRMLQRIQSRLQEE-HSLQDVIFKS 147
Query: 225 RFISTFTELPKRKSKPSEPPDACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGL 284
F S T LP R+ S+PPDACRIHG L +NKVAGN H+T GK++ P GH HL
Sbjct: 148 TFKSASTALPPREDDSSQPPDACRIHGHLYVNKVAGNFHITVGKAIPHPRGHAHLAALVN 207
Query: 285 GATYNFSHRIDKFSFGDPSPGIVHPLESELKI 316
+YNFSHRID SFG+ PGI++PL+ KI
Sbjct: 208 HDSYNFSHRIDHLSFGELVPGIINPLDGTEKI 239
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 318 KEGVRGLANPFESRFLENPSRVNPRTRVAFMAPSLSTFLRKSKPSEPPDACRIHGSLTLN 377
KE R L +SR E S + + F + S + R+ S+PPDACRIHG L +N
Sbjct: 121 KEWQRMLQR-IQSRLQEEHSLQDVIFKSTFKSASTALPPREDDSSQPPDACRIHGHLYVN 179
Query: 378 KVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRIDKFSFGDPSPGIVHPLESELKV 437
KVAGN H+T GK++ P GH HL +YNFSHRID SFG+ PGI++PL+ K+
Sbjct: 180 KVAGNFHITVGKAIPHPRGHAHLAALVNHDSYNFSHRIDHLSFGELVPGIINPLDGTEKI 239
Query: 438 S 438
+
Sbjct: 240 A 240
>sp|Q96RQ1|ERGI2_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 2
OS=Homo sapiens GN=ERGIC2 PE=1 SV=2
Length = 377
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
Query: 165 LGADIIDSTNQNMILFGELQEEDTWFELEPAQKSYFDSMQHVNSYLQEEFHAVQNLLWKS 224
+GAD++D + L E T F+L P QK + +Q + S LQEE H++Q++++KS
Sbjct: 89 VGADVLDLAETMVASADGLVYEPTVFDLSPQQKEWQRMLQLIQSRLQEE-HSLQDVIFKS 147
Query: 225 RFISTFTELPKRKSKPSEPPDACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGL 284
F ST T LP R+ S+ P+ACRIHG L +NKVAGN H+T GK++ P GH HL
Sbjct: 148 AFKSTSTALPPREDDSSQSPNACRIHGHLYVNKVAGNFHITVGKAIPHPRGHAHLAALVN 207
Query: 285 GATYNFSHRIDKFSFGDPSPGIVHPLESELKI 316
+YNFSHRID SFG+ P I++PL+ KI
Sbjct: 208 HESYNFSHRIDHLSFGELVPAIINPLDGTEKI 239
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 318 KEGVRGLANPFESRFLENPSRVNPRTRVAFMAPSLSTFLRKSKPSEPPDACRIHGSLTLN 377
KE R L +SR E S + + AF + S + R+ S+ P+ACRIHG L +N
Sbjct: 121 KEWQRML-QLIQSRLQEEHSLQDVIFKSAFKSTSTALPPREDDSSQSPNACRIHGHLYVN 179
Query: 378 KVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRIDKFSFGDPSPGIVHPLESELKV 437
KVAGN H+T GK++ P GH HL +YNFSHRID SFG+ P I++PL+ K+
Sbjct: 180 KVAGNFHITVGKAIPHPRGHAHLAALVNHESYNFSHRIDHLSFGELVPAIINPLDGTEKI 239
Query: 438 S 438
+
Sbjct: 240 A 240
>sp|Q9CR89|ERGI2_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 2
OS=Mus musculus GN=Ergic2 PE=2 SV=1
Length = 377
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Query: 165 LGADIIDSTNQNMILFGELQEEDTWFELEPAQKSYFDSMQHVNSYLQEEFHAVQNLLWKS 224
+GAD++D + L E F+L P Q+ + +Q + S LQEE H++Q++++KS
Sbjct: 89 VGADVLDLAETMVASADGLAYEPALFDLSPQQREWQRMLQLIQSRLQEE-HSLQDVIFKS 147
Query: 225 RFISTFTELPKRKSKPSEPPDACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGL 284
F S T LP R+ S PDACRIHG L +NKVAGN H+T GK++ P GH HL
Sbjct: 148 AFKSASTALPPREDDSSLTPDACRIHGHLYVNKVAGNFHITVGKAIPHPRGHAHLAALVN 207
Query: 285 GATYNFSHRIDKFSFGDPSPGIVHPLESELKITKE 319
+YNFSHRID SFG+ PGI++PL+ KI +
Sbjct: 208 HDSYNFSHRIDHLSFGELVPGIINPLDGTEKIAVD 242
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 67/110 (60%)
Query: 329 ESRFLENPSRVNPRTRVAFMAPSLSTFLRKSKPSEPPDACRIHGSLTLNKVAGNLHVTAG 388
+SR E S + + AF + S + R+ S PDACRIHG L +NKVAGN H+T G
Sbjct: 131 QSRLQEEHSLQDVIFKSAFKSASTALPPREDDSSLTPDACRIHGHLYVNKVAGNFHITVG 190
Query: 389 KSLALPGGHIHLTMFGLGATYNFSHRIDKFSFGDPSPGIVHPLESELKVS 438
K++ P GH HL +YNFSHRID SFG+ PGI++PL+ K++
Sbjct: 191 KAIPHPRGHAHLAALVNHDSYNFSHRIDHLSFGELVPGIINPLDGTEKIA 240
>sp|Q4R5C3|ERGI2_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 2
OS=Macaca fascicularis GN=ERGIC2 PE=2 SV=1
Length = 377
Score = 132 bits (331), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
Query: 165 LGADIIDSTNQNMILFGELQEEDTWFELEPAQKSYFDSMQHVNSYLQEEFHAVQNLLWKS 224
+GAD++D + L E F+L P QK + +Q S LQEE H++Q++++KS
Sbjct: 89 VGADVLDLAETMVASADGLVYEPAVFDLSPQQKEWQRMLQLTQSRLQEE-HSLQDVIFKS 147
Query: 225 RFISTFTELPKRKSKPSEPPDACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGL 284
F S T LP R+ S+ PDACRIHG L +NKVAGN H+T GK++ P GH HL
Sbjct: 148 AFKSASTALPPREDDSSQSPDACRIHGHLYVNKVAGNFHITVGKAIPHPRGHAHLAALVN 207
Query: 285 GATYNFSHRIDKFSFGDPSPGIVHPLESELKI 316
+YNFSHRID SFG+ P I++PL+ KI
Sbjct: 208 HESYNFSHRIDHLSFGELVPAIINPLDGTEKI 239
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 67/110 (60%)
Query: 329 ESRFLENPSRVNPRTRVAFMAPSLSTFLRKSKPSEPPDACRIHGSLTLNKVAGNLHVTAG 388
+SR E S + + AF + S + R+ S+ PDACRIHG L +NKVAGN H+T G
Sbjct: 131 QSRLQEEHSLQDVIFKSAFKSASTALPPREDDSSQSPDACRIHGHLYVNKVAGNFHITVG 190
Query: 389 KSLALPGGHIHLTMFGLGATYNFSHRIDKFSFGDPSPGIVHPLESELKVS 438
K++ P GH HL +YNFSHRID SFG+ P I++PL+ K++
Sbjct: 191 KAIPHPRGHAHLAALVNHESYNFSHRIDHLSFGELVPAIINPLDGTEKIA 240
>sp|Q7T2D4|ERGI2_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 2
OS=Danio rerio GN=ergic2 PE=2 SV=1
Length = 376
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 98/155 (63%), Gaps = 2/155 (1%)
Query: 165 LGADIIDSTNQNMILFGELQEEDTWFELEPAQKSYFDSMQHVNSYLQEEFHAVQNLLWKS 224
+GAD++D + M+ L E F+L P Q+ + ++ + L+EE H++Q++L+K+
Sbjct: 89 VGADVLDLA-ETMVASDGLVYEPVVFDLSPQQRLWHRTLLLIQGRLREE-HSLQDVLFKN 146
Query: 225 RFISTFTELPKRKSKPSEPPDACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGL 284
+ T LP R+ P++P +ACRIHG L +NKVAGN H+T GK++ P GH HL
Sbjct: 147 VMKGSPTALPPREDDPNQPLNACRIHGHLYVNKVAGNFHITVGKAIPHPRGHAHLAALVS 206
Query: 285 GATYNFSHRIDKFSFGDPSPGIVHPLESELKITKE 319
TYNFSHRID SFG+ PGI++PL+ K++ +
Sbjct: 207 HETYNFSHRIDHLSFGEEIPGILNPLDGTEKVSAD 241
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 58/83 (69%)
Query: 357 RKSKPSEPPDACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRID 416
R+ P++P +ACRIHG L +NKVAGN H+T GK++ P GH HL TYNFSHRID
Sbjct: 158 REDDPNQPLNACRIHGHLYVNKVAGNFHITVGKAIPHPRGHAHLAALVSHETYNFSHRID 217
Query: 417 KFSFGDPSPGIVHPLESELKVSS 439
SFG+ PGI++PL+ KVS+
Sbjct: 218 HLSFGEEIPGILNPLDGTEKVSA 240
>sp|Q1HCL7|NAKD1_RAT NAD kinase domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Nadkd1 PE=2 SV=1
Length = 425
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 87/170 (51%), Gaps = 21/170 (12%)
Query: 14 HILPEL--ALNDGKYKNLYRTRIKVSLRG---NTTSHSLH----SDNPPSRPRTLPE--- 61
H PE + G+++ L+R RI++ L G N + LH S N SR +
Sbjct: 183 HSFPEALQKFSRGEFRWLWRQRIRLYLEGTGINPSPVDLHEQQLSLNQHSRAFNIERVDD 242
Query: 62 --NEPKDFHILPELALNDVYVGEYNSALVSKLIISCDSHVPAKQIKCSGMCINTGSGSTA 119
+E +LP ALN+V++GE S+ S IS D P ++ K SG+ + TG+GS A
Sbjct: 243 ERSEASGPQLLPVRALNEVFIGESLSSRASYYEISVDDG-PWEKQKSSGLNLCTGTGSKA 301
Query: 120 WYYTISKLSEAKVNQLLTLS---GLDTSGCN---VAEITERYNKSLQFSP 163
W + I++++ V +L ++ G T N V ++T YN+SL +SP
Sbjct: 302 WSFNINRVAAQAVEDVLNIARRQGNLTLPLNKELVEKVTNEYNESLLYSP 351
>sp|Q4R8X1|ERGI3_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Macaca fascicularis GN=ERGIC3 PE=2 SV=1
Length = 382
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 342 RTRVAFMAPSLSTFLRKSKPSEPP-----DACRIHGSLTLNKVAGNLHVTAGKSLALPGG 396
R R AF P R+ S+ + C+++G L +NKVAGN H GKS
Sbjct: 167 RRRGAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHV 226
Query: 397 HIH-LTMFGLGATYNFSHRIDKFSFGDPSPGIVHPLE 432
H+H L FGL N +H I SFG+ PGIV+PL+
Sbjct: 227 HVHDLQSFGLD-NINMTHYIQHLSFGEDYPGIVNPLD 262
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 245 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH-LTMFGLGATYNFSHRIDKFSFGDPS 303
+ C+++G L +NKVAGN H GKS H+H L FGL N +H I SFG+
Sbjct: 196 EGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLD-NINMTHYIQHLSFGEDY 254
Query: 304 PGIVHPLE 311
PGIV+PL+
Sbjct: 255 PGIVNPLD 262
>sp|Q4G0N4|NAKD1_HUMAN NAD kinase domain-containing protein 1, mitochondrial OS=Homo
sapiens GN=NADKD1 PE=1 SV=2
Length = 442
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 19/158 (12%)
Query: 24 GKYKNLYRTRIKVSLRG---NTTSHSLH----SDNPPSRPRTLPE-----NEPKDFHILP 71
G+++ L+R RI++ L G N LH S N +R + +E +LP
Sbjct: 212 GEFRWLWRQRIRLYLEGTGINPVPVDLHEQQLSLNQHNRALNIERAHDERSEASGPQLLP 271
Query: 72 ELALNDVYVGEYNSALVSKLIISCDSHVPAKQIKCSGMCINTGSGSTAWYYTISKLSEAK 131
ALN+V++GE S+ S IS D P ++ K SG+ + TG+GS AW + I++++
Sbjct: 272 VRALNEVFIGESLSSRASYYEISVDDG-PWEKQKSSGLNLCTGTGSKAWSFNINRVATQA 330
Query: 132 VNQLLTLS------GLDTSGCNVAEITERYNKSLQFSP 163
V +L ++ L + V ++T YN+SL +SP
Sbjct: 331 VEDVLNIAKRQGNLSLPLNRELVEKVTNEYNESLLYSP 368
>sp|Q5R8G3|ERGI3_PONAB Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Pongo abelii GN=ERGIC3 PE=2 SV=1
Length = 383
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 245 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH-LTMFGLGATYNFSHRIDKFSFGDPS 303
+ C+++G L +NKVAGN H GKS H+H L FGL N +H I SFG+
Sbjct: 197 EGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLD-NINMTHYIQHLSFGEDY 255
Query: 304 PGIVHPLE 311
PGIV+PL+
Sbjct: 256 PGIVNPLD 263
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 366 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH-LTMFGLGATYNFSHRIDKFSFGDPS 424
+ C+++G L +NKVAGN H GKS H+H L FGL N +H I SFG+
Sbjct: 197 EGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLD-NINMTHYIQHLSFGEDY 255
Query: 425 PGIVHPLE 432
PGIV+PL+
Sbjct: 256 PGIVNPLD 263
>sp|Q9Y282|ERGI3_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Homo sapiens GN=ERGIC3 PE=1 SV=1
Length = 383
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 245 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH-LTMFGLGATYNFSHRIDKFSFGDPS 303
+ C+++G L +NKVAGN H GKS H+H L FGL N +H I SFG+
Sbjct: 197 EGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLD-NINMTHYIQHLSFGEDY 255
Query: 304 PGIVHPLE 311
PGIV+PL+
Sbjct: 256 PGIVNPLD 263
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 366 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH-LTMFGLGATYNFSHRIDKFSFGDPS 424
+ C+++G L +NKVAGN H GKS H+H L FGL N +H I SFG+
Sbjct: 197 EGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLD-NINMTHYIQHLSFGEDY 255
Query: 425 PGIVHPLE 432
PGIV+PL+
Sbjct: 256 PGIVNPLD 263
>sp|Q9CQE7|ERGI3_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Mus musculus GN=Ergic3 PE=2 SV=1
Length = 383
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 245 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH-LTMFGLGATYNFSHRIDKFSFGDPS 303
+ C+++G L +NKVAGN H GKS H+H L FGL N +H I SFG+
Sbjct: 197 EGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLD-NINMTHYIKHLSFGEDY 255
Query: 304 PGIVHPLE 311
PGIV+PL+
Sbjct: 256 PGIVNPLD 263
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 366 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH-LTMFGLGATYNFSHRIDKFSFGDPS 424
+ C+++G L +NKVAGN H GKS H+H L FGL N +H I SFG+
Sbjct: 197 EGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLD-NINMTHYIKHLSFGEDY 255
Query: 425 PGIVHPLE 432
PGIV+PL+
Sbjct: 256 PGIVNPLD 263
>sp|Q5EAE0|ERGI3_BOVIN Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Bos taurus GN=ERGIC3 PE=2 SV=1
Length = 383
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 245 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH-LTMFGLGATYNFSHRIDKFSFGDPS 303
+ C+++G L +NKVAGN H GKS H+H L FGL N +H I SFG+
Sbjct: 197 EGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLD-NINMTHYIRHLSFGEDY 255
Query: 304 PGIVHPLE 311
PGIV+PL+
Sbjct: 256 PGIVNPLD 263
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 366 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH-LTMFGLGATYNFSHRIDKFSFGDPS 424
+ C+++G L +NKVAGN H GKS H+H L FGL N +H I SFG+
Sbjct: 197 EGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLD-NINMTHYIRHLSFGEDY 255
Query: 425 PGIVHPLE 432
PGIV+PL+
Sbjct: 256 PGIVNPLD 263
>sp|Q803I2|ERGI3_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Danio rerio GN=ergic3 PE=2 SV=1
Length = 383
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 245 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH-LTMFGLGATYNFSHRIDKFSFGDPS 303
+ C+++G L +NKVAGN H GKS H+H L FGL N +H I SFG
Sbjct: 197 EGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLD-NINMTHFIKHLSFGKDY 255
Query: 304 PGIVHPLES 312
PGIV+PL+
Sbjct: 256 PGIVNPLDD 264
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 366 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH-LTMFGLGATYNFSHRIDKFSFGDPS 424
+ C+++G L +NKVAGN H GKS H+H L FGL N +H I SFG
Sbjct: 197 EGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLD-NINMTHFIKHLSFGKDY 255
Query: 425 PGIVHPLES 433
PGIV+PL+
Sbjct: 256 PGIVNPLDD 264
>sp|Q54DW2|ERGI3_DICDI Probable endoplasmic reticulum-Golgi intermediate compartment
protein 3 OS=Dictyostelium discoideum GN=ergic3 PE=3
SV=1
Length = 383
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 245 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRIDKFSFGDPSP 304
+ C+++G + +NKVAGN H GKS H+H ++N SH I++ SFG+ P
Sbjct: 196 EGCQVYGFILVNKVAGNFHFAPGKSFQQHHMHVHDLQPFKDGSFNVSHTINRLSFGNDFP 255
Query: 305 GIVHPLESELKITKEGV 321
GI +PL+ K GV
Sbjct: 256 GIKNPLDDVTKTEMVGV 272
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 366 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRIDKFSFGDPSP 425
+ C+++G + +NKVAGN H GKS H+H ++N SH I++ SFG+ P
Sbjct: 196 EGCQVYGFILVNKVAGNFHFAPGKSFQQHHMHVHDLQPFKDGSFNVSHTINRLSFGNDFP 255
Query: 426 GIVHPLESELK 436
GI +PL+ K
Sbjct: 256 GIKNPLDDVTK 266
>sp|Q6NVS2|ERGI3_XENTR Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1
Length = 384
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 245 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH-LTMFGLGATYNFSHRIDKFSFGDPS 303
+ C+++G L +NKVAGN H GKS H+H L FGL N +H I SFG
Sbjct: 198 EGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLD-NINMTHEIRHLSFGRDY 256
Query: 304 PGIVHPLE 311
PG+V+PL+
Sbjct: 257 PGLVNPLD 264
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 366 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH-LTMFGLGATYNFSHRIDKFSFGDPS 424
+ C+++G L +NKVAGN H GKS H+H L FGL N +H I SFG
Sbjct: 198 EGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLD-NINMTHEIRHLSFGRDY 256
Query: 425 PGIVHPLE 432
PG+V+PL+
Sbjct: 257 PGLVNPLD 264
>sp|Q66KH2|ERGI3_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Xenopus laevis GN=ergic3 PE=2 SV=1
Length = 389
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 245 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH------LTMFGLGATYNFSHRIDKFS 298
+ C+++G L +NKVAGN H GKS H+H L FGL N +H I S
Sbjct: 198 EGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHAVEIHDLQSFGLD-NINMTHEIKHLS 256
Query: 299 FGDPSPGIVHPLE 311
FG PG+V+PL+
Sbjct: 257 FGKDYPGLVNPLD 269
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 366 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH------LTMFGLGATYNFSHRIDKFS 419
+ C+++G L +NKVAGN H GKS H+H L FGL N +H I S
Sbjct: 198 EGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHAVEIHDLQSFGLD-NINMTHEIKHLS 256
Query: 420 FGDPSPGIVHPLE 432
FG PG+V+PL+
Sbjct: 257 FGKDYPGLVNPLD 269
>sp|Q08CZ6|NAKD1_XENTR NAD kinase domain-containing protein 1, mitochondrial OS=Xenopus
tropicalis GN=nadkd1 PE=2 SV=1
Length = 427
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 78/178 (43%), Gaps = 38/178 (21%)
Query: 21 LNDGKYKNLYRTRIKVSLRG---NTTSHSLHSDNPPSRPRTLPEN---EPKDF-----HI 69
L G+++ +R RI++ L G N T LH N E K +
Sbjct: 179 LYRGEFRWQWRQRIRLYLEGTGINLTPVDLHEQQLSLEQHNKAHNSQLEQKSVAVSGPQL 238
Query: 70 LPELALNDVYVGEYNSALV----------------SKLIISCDSHVPAKQIKCSGMCINT 113
LP ALN+V++GE S+ V S IS D P ++ K SG+ + T
Sbjct: 239 LPVRALNEVFIGESLSSRVNYKSCKPRFTFSLHRASYYEISVDDG-PWEKQKSSGLNVCT 297
Query: 114 GSGSTAWYYTISKLSEAKVNQLLTL--------SGLDTSGCNVAEITERYNKSLQFSP 163
G+GS AW Y I+K+S V +LL + LD+ + +T YN SL ++P
Sbjct: 298 GTGSKAWSYNINKMSSQSVEELLNIVRQHKSLNVSLDSD--VIQRVTNAYNDSLVYNP 353
>sp|Q8C5H8|NAKD1_MOUSE NAD kinase domain-containing protein 1, mitochondrial OS=Mus
musculus GN=Nadkd1 PE=1 SV=2
Length = 452
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 43/192 (22%)
Query: 14 HILPEL--ALNDGKYKNLYRTRIKVSLRG---NTTSHSLH----SDNPPSRPRTLPE--- 61
H PE + G+++ L+R RI++ L G N T LH S N SR +
Sbjct: 188 HSFPEALRRFSRGEFRWLWRQRIRLYLEGTGINPTPVDLHEQQLSLNQHSRAFNIERAHD 247
Query: 62 --NEPKDFHILPELALNDVYVGEYNSA----------------------LVSKLIISCDS 97
+E +LP ALN+V++GE S+ L S IS D
Sbjct: 248 ERSEASGPQLLPVRALNEVFIGESLSSRMPYCWAVAVDNLRRDIPNLKGLASYYEISVDD 307
Query: 98 HVPAKQIKCSGMCINTGSGSTAWYYTISKLSEAKVNQLLTLS---GLDTSGCN---VAEI 151
P ++ K SG+ + TG+GS AW + I++++ V +L ++ G T N V ++
Sbjct: 308 G-PWEKQKSSGLNLCTGTGSKAWSFNINRVAAQAVEDVLHIARRQGNLTLPLNKDLVEKV 366
Query: 152 TERYNKSLQFSP 163
T YN+SL +SP
Sbjct: 367 TNEYNESLLYSP 378
>sp|O94283|ERV41_SCHPO ER-derived vesicles protein 41 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=erv41 PE=1 SV=1
Length = 333
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 21/85 (24%)
Query: 356 LRKSKPSEPPD--ACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGA------ 407
RK +EP ACRI+G L +N+V G LH+TA PG +G G
Sbjct: 138 FRKKNNAEPGSGTACRIYGQLVVNRVNGQLHITA------PG-------WGYGRSNIPFH 184
Query: 408 TYNFSHRIDKFSFGDPSPGIVHPLE 432
+ NF+H I++ SFG+ P +V+ L+
Sbjct: 185 SLNFTHYIEELSFGEYYPALVNALD 209
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 21/84 (25%)
Query: 236 RKSKPSEPPD--ACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGA------T 287
RK +EP ACRI+G L +N+V G LH+TA PG +G G +
Sbjct: 139 RKKNNAEPGSGTACRIYGQLVVNRVNGQLHITA------PG-------WGYGRSNIPFHS 185
Query: 288 YNFSHRIDKFSFGDPSPGIVHPLE 311
NF+H I++ SFG+ P +V+ L+
Sbjct: 186 LNFTHYIEELSFGEYYPALVNALD 209
>sp|P39727|ERV46_YEAST ER-derived vesicles protein ERV46 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ERV46 PE=1 SV=2
Length = 415
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 245 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLT-MFGLGATYNFSHRIDKFSFGDP 302
+ CRI GS +N++ GNLH GK GH H T ++ + NF+H I+ SFG P
Sbjct: 204 EGCRIKGSAQINRIQGNLHFAPGKPYQNAYGHFHDTSLYDKTSNLNFNHIINHLSFGKP 262
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 366 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLT-MFGLGATYNFSHRIDKFSFGDP 423
+ CRI GS +N++ GNLH GK GH H T ++ + NF+H I+ SFG P
Sbjct: 204 EGCRIKGSAQINRIQGNLHFAPGKPYQNAYGHFHDTSLYDKTSNLNFNHIINHLSFGKP 262
>sp|Q09895|YAI8_SCHPO Uncharacterized protein C24B11.08c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC24B11.08c PE=3 SV=1
Length = 390
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 222 WKSRFISTFTELPKRKSKP---SEPPDACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIH 278
W+ + F + K ++ + C + G L++N++AGN H+ G+S H+H
Sbjct: 169 WRIGDVDAFKQCKDENFKELYEAQKVEGCNLAGQLSVNRMAGNFHIAPGRSTQNGNQHVH 228
Query: 279 LTMFGLGA--TYNFSHRIDKFSFGDPSPGIVH---PLESELK 315
T + ++ SH I SFG P VH PL+ +K
Sbjct: 229 DTRDYINELDLHDMSHSIHHLSFGPPLDASVHYSNPLDGTVK 270
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 362 SEPPDACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGA--TYNFSHRIDKFS 419
++ + C + G L++N++AGN H+ G+S H+H T + ++ SH I S
Sbjct: 191 AQKVEGCNLAGQLSVNRMAGNFHIAPGRSTQNGNQHVHDTRDYINELDLHDMSHSIHHLS 250
Query: 420 FGDPSPGIVH---PLESELK 436
FG P VH PL+ +K
Sbjct: 251 FGPPLDASVHYSNPLDGTVK 270
>sp|Q04651|ERV41_YEAST ER-derived vesicles protein ERV41 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ERV41 PE=1 SV=1
Length = 352
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 245 DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRIDKFSFGDPSP 304
+ C + GS+ +N+V+G L +TA KSL G++ L F+H I++FSFGD P
Sbjct: 160 NGCHVFGSIPVNRVSGELQITA-KSL----GYVASRKAPLEEL-KFNHVINEFSFGDFYP 213
Query: 305 GIVHPLESELKITKE 319
I +PL++ + ++
Sbjct: 214 YIDNPLDNTAQFNQD 228
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 354 TFLRKSKPSEPP----DACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGATY 409
+F +S P++ + C + GS+ +N+V+G L +TA KSL G++ L
Sbjct: 144 SFFDESDPNKAHLPEFNGCHVFGSIPVNRVSGELQITA-KSL----GYVASRKAPLEEL- 197
Query: 410 NFSHRIDKFSFGDPSPGIVHPLES 433
F+H I++FSFGD P I +PL++
Sbjct: 198 KFNHVINEFSFGDFYPYIDNPLDN 221
>sp|Q9DC16|ERGI1_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Mus musculus GN=Ergic1 PE=1 SV=1
Length = 290
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 246 ACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRIDKFSFGD 301
CR G ++NKV GN HV+ + A P + +H I K SFGD
Sbjct: 114 GCRFEGQFSINKVPGNFHVSTHSATAQP------------QNPDMTHTIHKLSFGD 157
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 367 ACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRIDKFSFGD 422
CR G ++NKV GN HV+ + A P + +H I K SFGD
Sbjct: 114 GCRFEGQFSINKVPGNFHVSTHSATAQP------------QNPDMTHTIHKLSFGD 157
>sp|Q969X5|ERGI1_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Homo sapiens GN=ERGIC1 PE=1 SV=1
Length = 290
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 246 ACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRIDKFSFGD 301
CR G ++NKV GN HV+ + A P + +H I K SFGD
Sbjct: 114 GCRFEGQFSINKVPGNFHVSTHSATAQP------------QNPDMTHVIHKLSFGD 157
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 367 ACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRIDKFSFGD 422
CR G ++NKV GN HV+ + A P + +H I K SFGD
Sbjct: 114 GCRFEGQFSINKVPGNFHVSTHSATAQP------------QNPDMTHVIHKLSFGD 157
>sp|Q473L9|PPNK_CUPPJ Probable inorganic polyphosphate/ATP-NAD kinase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=ppnK PE=3
SV=2
Length = 305
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 66 DFHILPELALNDVYVGEYNSALVSKLIISCDSHVPAKQIKCSGMCINTGSGSTAW 120
D I LALNDV V + + +L +S D + Q + G+ ++T +GSTA+
Sbjct: 146 DSPIFSALALNDVVVNRSGISGMVELAVSVDGYFMYNQ-RSDGLIVSTATGSTAY 199
>sp|O35412|SI1L1_RAT Signal-induced proliferation-associated 1-like protein 1 OS=Rattus
norvegicus GN=Sipa1l1 PE=1 SV=1
Length = 1822
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 26 YKNLYRTRIKVSLRGNTTSHSLHSDNPPSRPRTLPENEPKDFHILPELALNDVYVGEYNS 85
Y+ ++RT ++LRG+ ++ S S R LP E + H++PEL + + + +N+
Sbjct: 535 YRIIFRTSELMTLRGSVLEDAIPSTAKHSTARGLPLKEVLE-HVIPELNVQCLRLA-FNT 592
Query: 86 ALVSKLIISCDSHVPAKQIKCSGMCINTGSGSTAWYYTISKLSEAKVNQLLTLSGLDTSG 145
V++ ++ D Q K M G + Y K++E Q + LD G
Sbjct: 593 PKVTEQLMKLDEQGLNYQQKVGIMYCKAGQSTEEEMYNTPKVTE----QFMK---LDEQG 645
Query: 146 CNVAE 150
N +
Sbjct: 646 LNYQQ 650
>sp|Q6NS19|ERGI1_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Xenopus laevis GN=ergic1 PE=2 SV=1
Length = 290
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 12/56 (21%)
Query: 246 ACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRIDKFSFGD 301
CR G ++NKV GN HV+ ++A P A + H I K SFG+
Sbjct: 114 GCRFEGLFSINKVPGNFHVSTHSAIAQP------------ANPDMRHIIHKLSFGN 157
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 12/56 (21%)
Query: 367 ACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRIDKFSFGD 422
CR G ++NKV GN HV+ ++A P A + H I K SFG+
Sbjct: 114 GCRFEGLFSINKVPGNFHVSTHSAIAQP------------ANPDMRHIIHKLSFGN 157
>sp|P08793|XDH_CALVI Xanthine dehydrogenase OS=Calliphora vicina GN=XDH PE=2 SV=1
Length = 1353
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 165 LGADIIDSTNQNMILFGELQEEDTWFELEPAQKSYFDSMQHVNSYLQ----EEFHAVQNL 220
LG D ++ QN G++ + P +K ++D +Q N Y + EEF+ +N
Sbjct: 957 LGKDYLEIMKQNFYKEGDITHYQQKLDNFPIEKCFYDCLQQSNYYQKRKEIEEFN--RNH 1014
Query: 221 LWKSRFIS 228
W+ R IS
Sbjct: 1015 RWRKRGIS 1022
>sp|Q98NA6|PPNK_RHILO Probable inorganic polyphosphate/ATP-NAD kinase OS=Rhizobium loti
(strain MAFF303099) GN=ppnK PE=3 SV=2
Length = 257
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 73 LALNDVYVGEYNSALVSKLIISCDSHVPAKQIKCSGMCINTGSGSTAW 120
LA+N+V + S +K+ IS D + +++ C G+ I T +GSTA+
Sbjct: 113 LAINEVALWR-QSYQTAKIRISVDDQIRLEELSCDGVMIATPAGSTAY 159
>sp|A4RKC3|DCL1_MAGO7 Dicer-like protein 1 OS=Magnaporthe oryzae (strain 70-15 / ATCC
MYA-4617 / FGSC 8958) GN=DCL1 PE=3 SV=2
Length = 1591
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 111 INTGSGSTAWY-------YTISKLSEAKVNQLLTLS----GLDTSGCNVAEITERYNKSL 159
I G G A + T+S+ + ++N L S GLD GCNV + + ++
Sbjct: 494 IGAGRGGNAAFTTTRQQEQTVSRFRDGEINCLFATSIAEEGLDIPGCNVVIRFDLHGTTI 553
Query: 160 QFSPGLG-ADIIDSTNQNMILFGELQEEDTWFE 191
Q+ G A + +S +M FG + WF+
Sbjct: 554 QYIQSRGRARMRNSWFIHMTEFGNPEHNRRWFQ 586
>sp|Q721J0|RPIA_LISMF Ribose-5-phosphate isomerase A OS=Listeria monocytogenes serotype
4b (strain F2365) GN=rpiA PE=3 SV=1
Length = 224
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 107 SGMCINTGSGSTAWYYTISKLSEAKVNQLLTLSGLDTS 144
GM + G+GST YYTI KL E VN L ++G+ TS
Sbjct: 18 DGMVVGLGTGSTV-YYTIEKLGEM-VNNGLHITGVATS 53
>sp|Q8Y8D3|RPIA_LISMO Ribose-5-phosphate isomerase A OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=rpiA PE=3 SV=1
Length = 224
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 107 SGMCINTGSGSTAWYYTISKLSEAKVNQLLTLSGLDTS 144
GM + G+GST YYTI KL E VN L ++G+ TS
Sbjct: 18 DGMVVGLGTGSTV-YYTIEKLGEM-VNNGLHITGVATS 53
>sp|C1L1P6|RPIA_LISMC Ribose-5-phosphate isomerase A OS=Listeria monocytogenes serotype
4b (strain CLIP80459) GN=rpiA PE=3 SV=1
Length = 224
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 107 SGMCINTGSGSTAWYYTISKLSEAKVNQLLTLSGLDTS 144
GM + G+GST YYTI KL E VN L ++G+ TS
Sbjct: 18 DGMVVGLGTGSTV-YYTIEKLGEM-VNNGLHITGVATS 53
>sp|Q92QJ0|PPNK_RHIME Probable inorganic polyphosphate/ATP-NAD kinase OS=Rhizobium
meliloti (strain 1021) GN=ppnK PE=3 SV=1
Length = 257
Score = 32.0 bits (71), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 73 LALNDVYVGEYNSALVSKLIISCDSHVPAKQIKCSGMCINTGSGSTAW 120
LA+N+VY+ S +KL + D ++ C G+ + T +GSTA+
Sbjct: 113 LAINEVYLFR-QSYQAAKLKVMVDGKTRLDELTCDGLLLATPAGSTAY 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,440,394
Number of Sequences: 539616
Number of extensions: 7692460
Number of successful extensions: 17205
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 17122
Number of HSP's gapped (non-prelim): 67
length of query: 440
length of database: 191,569,459
effective HSP length: 121
effective length of query: 319
effective length of database: 126,275,923
effective search space: 40282019437
effective search space used: 40282019437
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)