RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1578
(440 letters)
>gnl|CDD|219673 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesicle
transporter. This family is conserved from plants and
fungi to humans. Erv46 works in close conjunction with
Erv41 and together they form a complex which cycles
between the endoplasmic reticulum and Golgi complex.
Erv46-41 interacts strongly with the endoplasmic
reticulum glucosidase II. Mammalian glucosidase II
comprises a catalytic alpha-subunit and a 58 kDa beta
subunit, which is required for ER localisation. All
proteins identified biochemically as Erv41p-Erv46p
interactors are localised to the early secretory pathway
and are involved in protein maturation and processing in
the ER and/or sorting into COPII vesicles for transport
to the Golgi.
Length = 222
Score = 82.3 bits (204), Expect = 5e-18
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 232 ELPKRKSKPSEPPDACRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFS 291
E ++ + CR+ G+L +N+VAGN H+ G+S GGH+H NFS
Sbjct: 41 EYVEKLKAQKNSNEGCRVKGTLEVNRVAGNFHIAPGRSFQEKGGHVHDLSLFTDEKLNFS 100
Query: 292 HRIDKFSFGDPSP-GIVHPLES 312
H I+ SFG+ P G+ +PL+
Sbjct: 101 HTINHLSFGEEFPGGVTNPLDG 122
Score = 81.2 bits (201), Expect = 1e-17
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 368 CRIHGSLTLNKVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRIDKFSFGDPSP-G 426
CR+ G+L +N+VAGN H+ G+S GGH+H NFSH I+ SFG+ P G
Sbjct: 56 CRVKGTLEVNRVAGNFHIAPGRSFQEKGGHVHDLSLFTDEKLNFSHTINHLSFGEEFPGG 115
Query: 427 IVHPLES 433
+ +PL+
Sbjct: 116 VTNPLDG 122
>gnl|CDD|232786 TIGR00021, rpiA, ribose 5-phosphate isomerase. This model
describes ribose 5-phosphate isomerase, an enzyme of the
non-oxidative branch of the pentose phosphate pathway
[Energy metabolism, Pentose phosphate pathway].
Length = 218
Score = 34.9 bits (81), Expect = 0.045
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 19/84 (22%)
Query: 107 SGMCINTGSGSTAWYYTISKLSEAKVNQLLTLSGLDTSGCNVAEITERYN-------KSL 159
GM + G+GST Y I L E + L + G+ TS + T SL
Sbjct: 15 DGMVVGLGTGSTV-AYFIEALGERVKQEGLDIVGVPTS-----KQTAELARELGIPLSSL 68
Query: 160 QFSPGL-----GADIIDSTNQNMI 178
P L GAD +D N +I
Sbjct: 69 DEVPELDLAIDGADEVDP-NLQLI 91
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 33.9 bits (78), Expect = 0.19
Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 5/111 (4%)
Query: 41 NTTSHSLHSDNPPSRPRT----LPENEPKDFHILPELALNDVYVGEYNSA-LVSKLIISC 95
N+ +S S +P + PE +L ELA + Y + L C
Sbjct: 11 NSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFC 70
Query: 96 DSHVPAKQIKCSGMCINTGSGSTAWYYTISKLSEAKVNQLLTLSGLDTSGC 146
+ VP + +N G ++L E VN L L G
Sbjct: 71 PTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEAS 121
>gnl|CDD|223139 COG0061, nadF, NAD kinase [Coenzyme metabolism].
Length = 281
Score = 33.1 bits (76), Expect = 0.22
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 73 LALNDVYVGEYNSALVSKLIISCDSHVPAKQIKCSGMCINTGSGSTAW 120
LALN+V + S + + G+ ++T +GSTA+
Sbjct: 134 LALNEVVI-HRGSPAKMIEFEVYIDDEFFESFRGDGLIVSTPTGSTAY 180
>gnl|CDD|238692 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A)
subfamily; RPI catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. This reaction leads to the conversion
of phosphosugars into glycolysis intermediates, which
are precursors for the synthesis of amino acids,
vitamins, nucleotides, and cell wall components. In
plants, RPI is part of the Calvin cycle as ribulose
5-phosphate is the carbon dioxide receptor in the first
dark reaction of photosynthesis. There are two unrelated
types of RPIs (A and B), which catalyze the same
reaction, at least one type of RPI is present in an
organism. RPI_A is more widely distributed than RPI_B in
bacteria, eukaryotes, and archaea.
Length = 213
Score = 31.3 bits (72), Expect = 0.70
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 28/94 (29%)
Query: 101 AKQIKCSGMCINTGSGSTAWYYTISKLSEAKVNQLLTLSGLDTSGCNVAEITERYNKSLQ 160
++ GM I G+GST Y I L E + L + G+ TS TE + L
Sbjct: 10 VDYVE-DGMVIGLGTGSTV-AYFIEALGERVREEGLNIVGVPTS-----FQTEELAREL- 61
Query: 161 FSPGL----------------GADIIDSTNQNMI 178
G+ GAD +D N+I
Sbjct: 62 ---GIPLTDLDEVPRLDLAIDGADEVDPDL-NLI 91
>gnl|CDD|223198 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbohydrate transport
and metabolism].
Length = 227
Score = 31.4 bits (72), Expect = 0.77
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 21/90 (23%)
Query: 101 AKQIKCSGMCINTGSGSTAWYYTISKLSEAKVNQLLTLSGLDTSGCNVAEITERYNKSLQ 160
+ +K GM I G+GSTA Y I L +V L + G+ TS TE + L
Sbjct: 15 LEYVK-DGMVIGLGTGSTA-AYFIEALGR-RVKGELDIGGVPTS-----FQTEELARELG 66
Query: 161 FS-------PGL-----GADIIDSTNQNMI 178
L GAD +D N N+I
Sbjct: 67 IPVSSLNEVDSLDLAIDGADEVDP-NLNLI 95
>gnl|CDD|215502 PLN02929, PLN02929, NADH kinase.
Length = 301
Score = 31.5 bits (72), Expect = 0.78
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
Query: 70 LPELALNDVYVGEYNSALVSKLIISCDSHVPAKQIKC--------SGMCINTGSGSTA 119
L ALNDV + + A VS+ V + SG+ ++T +GSTA
Sbjct: 156 LETPALNDVLIAHPSPAAVSR----FSFRVGRQGGSSGPLINVRSSGLRVSTAAGSTA 209
>gnl|CDD|225744 COG3203, OmpC, Outer membrane protein (porin) [Cell envelope
biogenesis, outer membrane].
Length = 354
Score = 31.2 bits (71), Expect = 1.1
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 257 KVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRID 295
+++G + + GK L + +GATY FS
Sbjct: 280 RLSGAYYYSKGKDLNGVTDKDLVKYVDVGATYYFSKNTS 318
Score = 31.2 bits (71), Expect = 1.1
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 378 KVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRID 416
+++G + + GK L + +GATY FS
Sbjct: 280 RLSGAYYYSKGKDLNGVTDKDLVKYVDVGATYYFSKNTS 318
>gnl|CDD|234816 PRK00702, PRK00702, ribose-5-phosphate isomerase A; Provisional.
Length = 220
Score = 30.4 bits (70), Expect = 1.4
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 21/90 (23%)
Query: 101 AKQIKCSGMCINTGSGSTAWYYTISKLSEAKVNQLLTLSGLDTSGCNVAEITER----YN 156
A+ ++ GM + G+GSTA Y I L E +V + L + G+ TS E +
Sbjct: 15 AEYVE-DGMIVGLGTGSTA-AYFIDALGE-RVKEGLIIGGVPTS-----EASTELAKELG 66
Query: 157 ---KSLQFSPGL-----GADIIDSTNQNMI 178
L L GAD ID + N+I
Sbjct: 67 IPLFDLNEVDSLDLYVDGADEIDP-HLNLI 95
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 29.2 bits (66), Expect = 3.4
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 307 VHPLESELKITKEGVRGLANPF--ESRFLENPSRVNPRTRV-AFMAPS---LSTFLR-KS 359
V L E T VR L N F + + L + S P+ RV AF+ PS ST LR +
Sbjct: 16 VLNLSDE--QTALEVRNL-NLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFN 72
Query: 360 KPSEPPDACRIHGSLTLN 377
+ ++ D CRI G + L+
Sbjct: 73 RMNDLVDNCRIEGEIRLD 90
>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit),
Ras-like protein in neurons (Rin) and Ras-related
protein which interacts with calmodulin (Ric). Rit
(Ras-like protein in all tissues), Rin (Ras-like protein
in neurons) and Ric (Ras-related protein which interacts
with calmodulin) form a subfamily with several unique
structural and functional characteristics. These
proteins all lack a the C-terminal CaaX lipid-binding
motif typical of Ras family proteins, and Rin and Ric
contain calmodulin-binding domains. Rin, which is
expressed only in neurons, induces neurite outgrowth in
rat pheochromocytoma cells through its association with
calmodulin and its activation of endogenous Rac/cdc42.
Rit, which is ubiquitously expressed in mammals,
inhibits growth-factor withdrawl-mediated apoptosis and
induces neurite extension in pheochromocytoma cells. Rit
and Rin are both able to form a ternary complex with
PAR6, a cell polarity-regulating protein, and Rac/cdc42.
This ternary complex is proposed to have physiological
function in processes such as tumorigenesis. Activated
Ric is likely to signal in parallel with the Ras pathway
or stimulate the Ras pathway at some upstream point, and
binding of calmodulin to Ric may negatively regulate Ric
activity.
Length = 172
Score = 28.3 bits (63), Expect = 6.6
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 310 LESELKITKEGVRGLANPFESRFLENPSRVNPRTRVAFMAPSLSTFLRKSKPSEP 364
LE + ++T E R LA F F E + + AF L +R+ K S P
Sbjct: 119 LEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHG--LVREIRR-KESMP 170
>gnl|CDD|215505 PLN02935, PLN02935, Bifunctional NADH kinase/NAD(+) kinase.
Length = 508
Score = 28.6 bits (64), Expect = 8.3
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 71 PELALNDVYVGEYNSALVSKLIISCDSHVPAKQIKCSGMCINTGSGSTAW 120
P L LN+V + S+ ++ L CD+ ++ G+ ++T SGSTA+
Sbjct: 346 PILVLNEVTIDRGISSFLTNLECYCDNSF-VTCVQGDGLILSTTSGSTAY 394
>gnl|CDD|197872 smart00780, PIG-X, PIG-X / PBN1. Mammalian PIG-X and yeast PBN1
are essential components of
glycosylphosphatidylinositol-mannosyltransferase I.
These enzymes are involved in the transfer of sugar
molecules.
Length = 203
Score = 27.7 bits (62), Expect = 9.2
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 350 PSLSTFLRKSKPSEPPDACRIHGSLTLNK 378
P L L P E + C +H LTL
Sbjct: 7 PKLEIDLTSIPPDEDDEECALHAYLTLPS 35
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.400
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,205,992
Number of extensions: 2098868
Number of successful extensions: 1509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1506
Number of HSP's successfully gapped: 21
Length of query: 440
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 340
Effective length of database: 6,502,202
Effective search space: 2210748680
Effective search space used: 2210748680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.0 bits)