RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1578
         (440 letters)



>d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium
           (Salmonella typhimurium) [TaxId: 90371]}
          Length = 413

 Score = 29.6 bits (66), Expect = 0.79
 Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 8/130 (6%)

Query: 185 EEDTWFELEPAQKSYFDSMQHVNSYLQEEFHAVQNLLWKS-----RFISTFTELPKRKSK 239
           + DT+ E+    K   D+       +           W +          F EL    + 
Sbjct: 44  QADTYVEMNLEHKQTLDNGATTRFKVMVADGQTSYNDWTASTSDLNVRQAFVELGNLPTF 103

Query: 240 PSEPPDACRIHGSLTLNKVAGNLHVTAGKSLAL--PGGHIHLTMFGLGATYNFSHRIDKF 297
                 +  +      ++   ++H      + L   GG I+   +  G   NFS     F
Sbjct: 104 AGPFKGS-TLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVKWNDGLRSNFSLYGRNF 162

Query: 298 SFGDPSPGIV 307
              D S   V
Sbjct: 163 GDIDDSSNSV 172


>d2zfga1 f.4.3.1 (A:1-340) Porin {Escherichia coli, different
           sequences [TaxId: 562]}
          Length = 340

 Score = 28.7 bits (63), Expect = 1.3
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 257 KVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRID 295
           + +     +  K +   G    +  F +GATY F+  + 
Sbjct: 270 RPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMS 308



 Score = 28.7 bits (63), Expect = 1.3
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 378 KVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRID 416
           + +     +  K +   G    +  F +GATY F+  + 
Sbjct: 270 RPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMS 308


>d1osma_ f.4.3.1 (A:) Porin {Klebsiella pneumoniae [TaxId: 573]}
          Length = 342

 Score = 28.7 bits (63), Expect = 1.4
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 257 KVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRID 295
           + +     + GK L   G    L    +GATY F+  + 
Sbjct: 269 RPSVAYLQSKGKDLNGYGDQDILKYVDVGATYYFNKNMS 307



 Score = 28.7 bits (63), Expect = 1.4
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 378 KVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRID 416
           + +     + GK L   G    L    +GATY F+  + 
Sbjct: 269 RPSVAYLQSKGKDLNGYGDQDILKYVDVGATYYFNKNMS 307


>d1phoa_ f.4.3.1 (A:) Porin {Escherichia coli, different sequences
           [TaxId: 562]}
          Length = 330

 Score = 28.0 bits (61), Expect = 2.4
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 257 KVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRID 295
           + +    ++ GK +   G    +    +GATY F+  + 
Sbjct: 260 RPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMS 298



 Score = 28.0 bits (61), Expect = 2.4
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 378 KVAGNLHVTAGKSLALPGGHIHLTMFGLGATYNFSHRID 416
           + +    ++ GK +   G    +    +GATY F+  + 
Sbjct: 260 RPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMS 298


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0465    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,620,388
Number of extensions: 74348
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 7
Length of query: 440
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,199,356
Effective search space: 422173312
Effective search space used: 422173312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.2 bits)