BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15782
(129 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|158285999|ref|XP_308555.4| AGAP007246-PA [Anopheles gambiae str. PEST]
gi|157020260|gb|EAA04383.5| AGAP007246-PA [Anopheles gambiae str. PEST]
Length = 126
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/86 (83%), Positives = 81/86 (94%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDVAMNTHLK VKMT+K ++P TLDS+S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVTLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSLPLETLLIDDAP+++ K+
Sbjct: 66 RYYILPDSLPLETLLIDDAPKTRAKK 91
>gi|170064026|ref|XP_001867355.1| small nuclear ribonucleoprotein Sm D1 [Culex quinquefasciatus]
gi|167881462|gb|EDS44845.1| small nuclear ribonucleoprotein Sm D1 [Culex quinquefasciatus]
Length = 126
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/91 (82%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDVAMNTHLK VKMT+K ++P LDS+S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVQLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK-RDSRR 92
RYYILPDSLPLETLLIDDAP+++ K RDS R
Sbjct: 66 RYYILPDSLPLETLLIDDAPKTRAKKRDSNR 96
>gi|242022404|ref|XP_002431630.1| small nuclear ribonucleoprotein sm D1, putative [Pediculus
humanus corporis]
gi|212516938|gb|EEB18892.1| small nuclear ribonucleoprotein sm D1, putative [Pediculus
humanus corporis]
Length = 122
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 79/86 (91%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDVAMNTHLK VKMT+K KEP L+++++RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNKEPVMLETLTIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPLETLLIDD P+SK K+
Sbjct: 66 RYFILPDSLPLETLLIDDTPKSKAKK 91
>gi|157105264|ref|XP_001648790.1| small nuclear ribonucleoprotein sm d1 [Aedes aegypti]
gi|157118312|ref|XP_001653165.1| small nuclear ribonucleoprotein sm d1 [Aedes aegypti]
gi|108880134|gb|EAT44359.1| AAEL004263-PA [Aedes aegypti]
gi|108883288|gb|EAT47513.1| AAEL001382-PA [Aedes aegypti]
Length = 126
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/91 (80%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDVAMNTHLK VKMT+K ++P LDS+S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVQLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK-RDSRR 92
RYYILPDSLPLETLLIDDAP+++ K R++ R
Sbjct: 66 RYYILPDSLPLETLLIDDAPKTRAKKREANR 96
>gi|198464926|ref|XP_001353417.2| GA10544 [Drosophila pseudoobscura pseudoobscura]
gi|198149939|gb|EAL30924.2| GA10544 [Drosophila pseudoobscura pseudoobscura]
Length = 125
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 80/86 (93%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQ+HGTI GVDVAMNTHLK+V+MT+K ++P L+S+S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLESLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPLETLLIDD P+SK K+
Sbjct: 66 RYFILPDSLPLETLLIDDTPKSKTKK 91
>gi|66509459|ref|XP_624938.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Apis mellifera]
gi|340728072|ref|XP_003402355.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Bombus terrestris]
gi|350424394|ref|XP_003493781.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Bombus impatiens]
gi|383861733|ref|XP_003706339.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Megachile rotundata]
Length = 123
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/80 (87%), Positives = 75/80 (93%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDVAMNTHLKTVKMT+K ++P LD++SLRGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKTVKMTIKNRDPVQLDTLSLRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RYYILPDSLPLETLLIDD P
Sbjct: 66 RYYILPDSLPLETLLIDDTP 85
>gi|156538102|ref|XP_001608160.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Nasonia vitripennis]
Length = 123
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/80 (87%), Positives = 75/80 (93%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDVAMNTHLKTVKMT+K ++P LD++SLRGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKTVKMTIKNRDPVQLDTLSLRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RYYILPDSLPLETLLIDD P
Sbjct: 66 RYYILPDSLPLETLLIDDTP 85
>gi|17864386|ref|NP_524774.1| small ribonucleoprotein particle protein SmD1 [Drosophila
melanogaster]
gi|194747611|ref|XP_001956245.1| GF25112 [Drosophila ananassae]
gi|195327205|ref|XP_002030312.1| GM24635 [Drosophila sechellia]
gi|195493908|ref|XP_002094615.1| GE20102 [Drosophila yakuba]
gi|195589894|ref|XP_002084684.1| GD12704 [Drosophila simulans]
gi|33112453|sp|Q9VU02.1|SMD1_DROME RecName: Full=Probable small nuclear ribonucleoprotein Sm D1;
Short=Sm-D1; AltName: Full=snRNP core protein D1
gi|7294552|gb|AAF49893.1| small ribonucleoprotein particle protein SmD1 [Drosophila
melanogaster]
gi|189181777|gb|ACD81665.1| FI02845p [Drosophila melanogaster]
gi|190623527|gb|EDV39051.1| GF25112 [Drosophila ananassae]
gi|194119255|gb|EDW41298.1| GM24635 [Drosophila sechellia]
gi|194180716|gb|EDW94327.1| GE20102 [Drosophila yakuba]
gi|194196693|gb|EDX10269.1| GD12704 [Drosophila simulans]
Length = 124
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 80/86 (93%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQ+HGTI GVDVAMNTHLK+V+MT+K ++P L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPLETLLIDD P+SK K+
Sbjct: 66 RYFILPDSLPLETLLIDDTPKSKTKK 91
>gi|194870009|ref|XP_001972567.1| GG13810 [Drosophila erecta]
gi|190654350|gb|EDV51593.1| GG13810 [Drosophila erecta]
Length = 124
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 80/86 (93%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQ+HGTI GVDVAMNTHLK+V+MT+K ++P L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPLETLLIDD P+SK K+
Sbjct: 66 RYFILPDSLPLETLLIDDTPKSKTKK 91
>gi|391333356|ref|XP_003741082.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Metaseiulus occidentalis]
Length = 120
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 80/88 (90%), Gaps = 1/88 (1%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNN 61
FLMKLSHETVTIELKNGTQVHGT+ GVDVAMNTHLK VKMT+K EP +L+++S+RGNN
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTVTGVDVAMNTHLKNVKMTLKNAAEPVSLETLSIRGNN 65
Query: 62 IRYYILPDSLPLETLLIDDAPRSKGKRD 89
IRYYILPDSLPLETLLIDD P++K K++
Sbjct: 66 IRYYILPDSLPLETLLIDDTPKAKKKKE 93
>gi|405973300|gb|EKC38022.1| Small nuclear ribonucleoprotein Sm D1 [Crassostrea gigas]
Length = 688
Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 67/86 (77%), Positives = 78/86 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGT+ GVDV MNTHLK VKMT+K K+P +D++S+RGNNI
Sbjct: 573 FLMKLSHETVTIELKNGTQVHGTVTGVDVCMNTHLKAVKMTIKNKDPVQVDTLSIRGNNI 632
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSLPL+TLLIDD P++K K+
Sbjct: 633 RYYILPDSLPLDTLLIDDTPKAKQKK 658
>gi|195435704|ref|XP_002065819.1| GK18761 [Drosophila willistoni]
gi|194161904|gb|EDW76805.1| GK18761 [Drosophila willistoni]
Length = 124
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 80/86 (93%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQ+HGTI GVDVAMNTHLK+V+MT++ ++P L+S+S+RGNN+
Sbjct: 6 FLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIRNRDPVHLESLSIRGNNV 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPLETLLIDD P+SK K+
Sbjct: 66 RYFILPDSLPLETLLIDDTPKSKTKK 91
>gi|427786235|gb|JAA58569.1| Putative small nuclear ribonucleoprotein d1 [Rhipicephalus
pulchellus]
Length = 120
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/80 (86%), Positives = 74/80 (92%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDVAMNTHLK VKMT+K +EP LDS+S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTMKNREPVQLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RYY+LPDSLPLETLLIDD P
Sbjct: 66 RYYLLPDSLPLETLLIDDTP 85
>gi|442757617|gb|JAA70967.1| Putative small nuclear ribonucleoprotein d1 [Ixodes ricinus]
Length = 118
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/80 (86%), Positives = 74/80 (92%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDVAMNTHLK VKMT+K +EP LDS+S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTMKNREPVQLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RYY+LPDSLPLETLLIDD P
Sbjct: 66 RYYLLPDSLPLETLLIDDTP 85
>gi|380025256|ref|XP_003696393.1| PREDICTED: LOW QUALITY PROTEIN: probable small nuclear
ribonucleoprotein Sm D1-like [Apis florea]
Length = 97
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/80 (86%), Positives = 74/80 (92%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIE KNGTQVHGTI GVDVAMNTHLKTVKMT+K ++P LD++SLRGNNI
Sbjct: 6 FLMKLSHETVTIEXKNGTQVHGTITGVDVAMNTHLKTVKMTIKNRDPVQLDTLSLRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RYYILPDSLPLETLLIDD P
Sbjct: 66 RYYILPDSLPLETLLIDDTP 85
>gi|291394184|ref|XP_002713641.1| PREDICTED: small nuclear ribonucleoprotein D1 polypeptide
16kDa-like [Oryctolagus cuniculus]
Length = 236
Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 123 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 182
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 183 RYFILPDSLPLDTLLVDVEPKVKSKK 208
>gi|27545253|ref|NP_775359.1| small nuclear ribonucleoprotein Sm D1 [Danio rerio]
gi|21105451|gb|AAM34669.1|AF506225_1 small nuclear ribonucleoprotein D1 [Danio rerio]
gi|47938075|gb|AAH71543.1| Snrpd1 protein [Danio rerio]
Length = 119
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 78/86 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EPT L+S+S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDIEPKVKSKK 91
>gi|348513171|ref|XP_003444116.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Oreochromis niloticus]
gi|432883312|ref|XP_004074261.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Oryzias
latipes]
Length = 119
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 78/86 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EPT L+S+S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDIEPKIKSKK 91
>gi|325303250|tpg|DAA34761.1| TPA_inf: small nuclear ribonucleoprotein SMD1 [Amblyomma
variegatum]
gi|346469165|gb|AEO34427.1| hypothetical protein [Amblyomma maculatum]
gi|346469167|gb|AEO34428.1| hypothetical protein [Amblyomma maculatum]
Length = 120
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/80 (85%), Positives = 74/80 (92%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDVAMNTHLK VKMT++ +EP LDS+S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTMRNREPVQLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RYY+LPDSLPLETLLIDD P
Sbjct: 66 RYYLLPDSLPLETLLIDDTP 85
>gi|149720998|ref|XP_001492698.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Equus
caballus]
Length = 116
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 78/88 (88%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
M FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGN
Sbjct: 1 MQFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 60
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKR 88
NIRY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 61 NIRYFILPDSLPLDTLLVDVEPKVKSKK 88
>gi|17945870|gb|AAL48981.1| RE39488p [Drosophila melanogaster]
Length = 124
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 79/86 (91%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQ+HGTI GVDVAMNTHLK+V+MT+K ++ L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDHVHLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPLETLLIDD P+SK K+
Sbjct: 66 RYFILPDSLPLETLLIDDTPKSKTKK 91
>gi|432105433|gb|ELK31648.1| Small nuclear ribonucleoprotein Sm D1 [Myotis davidii]
Length = 221
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 108 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 167
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 168 RYFILPDSLPLDTLLVDVEPKVKSKK 193
>gi|307165950|gb|EFN60277.1| Probable malonyl CoA-acyl carrier protein transacylase,
mitochondrial [Camponotus floridanus]
Length = 463
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 68/80 (85%), Positives = 74/80 (92%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQV GTI GVDVAMNTHLKTVKMT+K ++P L+++SLRGNNI
Sbjct: 346 FLMKLSHETVTIELKNGTQVTGTITGVDVAMNTHLKTVKMTIKNRDPIQLETLSLRGNNI 405
Query: 63 RYYILPDSLPLETLLIDDAP 82
RYYILPDSLPLETLLIDD P
Sbjct: 406 RYYILPDSLPLETLLIDDTP 425
>gi|357623693|gb|EHJ74743.1| small nuclear ribonucleoprotein Sm D1 [Danaus plexippus]
Length = 125
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 79/87 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNG+ VHGTI GVDVAMNTHLK VK+T+K KE L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNKEELQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRD 89
RY++LPDSLPLETLLIDDAP+ KGKR+
Sbjct: 66 RYFLLPDSLPLETLLIDDAPKGKGKRE 92
>gi|443713219|gb|ELU06184.1| hypothetical protein CAPTEDRAFT_162674 [Capitella teleta]
Length = 126
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 77/83 (92%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGT VHGTI GVDV+MNTHLK+VKMT+K ++P LD++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTMVHGTITGVDVSMNTHLKSVKMTIKNRDPIQLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSK 85
RYY+LPDSLPL+TLLIDD P+SK
Sbjct: 66 RYYLLPDSLPLDTLLIDDTPKSK 88
>gi|307198074|gb|EFN79127.1| Probable small nuclear ribonucleoprotein Sm D1 [Harpegnathos
saltator]
Length = 123
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/80 (85%), Positives = 75/80 (93%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQV+GTI GVDVAMNTHLKTVKMT+K ++P L+++SLRGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVNGTITGVDVAMNTHLKTVKMTIKNRDPVQLETLSLRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RYYILPDSLPLETLLIDD P
Sbjct: 66 RYYILPDSLPLETLLIDDTP 85
>gi|148691046|gb|EDL22993.1| mCG14669, isoform CRA_b [Mus musculus]
Length = 134
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 21 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 80
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 81 RYFILPDSLPLDTLLVDVEPKVKSKK 106
>gi|195160693|ref|XP_002021209.1| GL24936 [Drosophila persimilis]
gi|194118322|gb|EDW40365.1| GL24936 [Drosophila persimilis]
Length = 118
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/84 (78%), Positives = 78/84 (92%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
MKLSHETVTIELKNGTQ+HGTI GVDVAMNTHLK+V+MT+K ++P L+S+S+RGNNIRY
Sbjct: 1 MKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLESLSIRGNNIRY 60
Query: 65 YILPDSLPLETLLIDDAPRSKGKR 88
+ILPDSLPLETLLIDD P+SK K+
Sbjct: 61 FILPDSLPLETLLIDDTPKSKTKK 84
>gi|260819208|ref|XP_002604929.1| hypothetical protein BRAFLDRAFT_264344 [Branchiostoma floridae]
gi|229290258|gb|EEN60939.1| hypothetical protein BRAFLDRAFT_264344 [Branchiostoma floridae]
Length = 121
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/80 (82%), Positives = 74/80 (92%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVT+ELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP LDS+S+RGNNI
Sbjct: 6 FLMKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTIKNREPVQLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RY+ILPDSLPL+TLLIDD P
Sbjct: 66 RYFILPDSLPLDTLLIDDTP 85
>gi|344269970|ref|XP_003406820.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Loxodonta
africana]
Length = 133
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 20 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 79
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 80 RYFILPDSLPLDTLLVDVEPKVKSKK 105
>gi|52345462|ref|NP_001004780.1| small nuclear ribonucleoprotein Sm D1 [Xenopus (Silurana)
tropicalis]
gi|148227202|ref|NP_001085322.1| small nuclear ribonucleoprotein Sm D1 [Xenopus laevis]
gi|49250837|gb|AAH74514.1| MGC69276 protein [Xenopus (Silurana) tropicalis]
gi|49255946|gb|AAH71069.1| MGC78968 protein [Xenopus laevis]
gi|76779906|gb|AAI06262.1| MGC78968 protein [Xenopus laevis]
gi|118835457|gb|AAI28954.1| MGC78968 protein [Xenopus laevis]
Length = 119
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVT+ELKNGTQVHGTI GVDV+MNTHLK VKMTVK +EP L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTVKNREPVQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKK 91
>gi|313226324|emb|CBY21468.1| unnamed protein product [Oikopleura dioica]
gi|313241294|emb|CBY33571.1| unnamed protein product [Oikopleura dioica]
Length = 127
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 84/101 (83%), Gaps = 7/101 (6%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQV GTI GVD+ MNTHLK V++TVKG+EP LD++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVVGTIAGVDICMNTHLKNVRLTVKGREPQQLDALSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
RYYILPDS+PL+TLLIDD P++ RGGG+ RGRG
Sbjct: 66 RYYILPDSVPLDTLLIDDGPKA-------RGGGSTRDRGRG 99
>gi|355721054|gb|AES07137.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Mustela
putorius furo]
Length = 139
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 26 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 85
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 86 RYFILPDSLPLDTLLVDVEPKVKSKK 111
>gi|410910972|ref|XP_003968964.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Takifugu
rubripes]
Length = 119
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT K +EPT L+S+S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTPKNREPTQLESLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDIEPKVKSKK 91
>gi|326498561|dbj|BAJ98708.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 181
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD IS+RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTMKGKNPVTLDHISVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL++D PR K K+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRVKSKK 91
>gi|431896295|gb|ELK05711.1| Small nuclear ribonucleoprotein Sm D1 [Pteropus alecto]
Length = 122
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 9 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 68
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 69 RYFILPDSLPLDTLLVDVEPKVKSKK 94
>gi|402902787|ref|XP_003914277.1| PREDICTED: uncharacterized protein LOC101001281 [Papio anubis]
Length = 266
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 114 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 173
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 174 RYFILPDSLPLDTLLVDVEPKVKSKK 199
>gi|5902102|ref|NP_008869.1| small nuclear ribonucleoprotein Sm D1 [Homo sapiens]
gi|6678055|ref|NP_033252.1| small nuclear ribonucleoprotein Sm D1 [Mus musculus]
gi|78050059|ref|NP_001030237.1| small nuclear ribonucleoprotein Sm D1 [Bos taurus]
gi|157818069|ref|NP_001099633.1| small nuclear ribonucleoprotein Sm D1 [Rattus norvegicus]
gi|350535747|ref|NP_001232444.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|386780612|ref|NP_001247758.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|57089749|ref|XP_537302.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Canis lupus
familiaris]
gi|114672526|ref|XP_512054.2| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Pan
troglodytes]
gi|126321779|ref|XP_001363297.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Monodelphis domestica]
gi|296222369|ref|XP_002757161.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Callithrix
jacchus]
gi|297702359|ref|XP_002828147.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Pongo abelii]
gi|301785950|ref|XP_002928390.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Ailuropoda
melanoleuca]
gi|311259030|ref|XP_003127902.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Sus
scrofa]
gi|327282141|ref|XP_003225802.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Anolis
carolinensis]
gi|348576770|ref|XP_003474159.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cavia
porcellus]
gi|354481732|ref|XP_003503055.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cricetulus
griseus]
gi|395511627|ref|XP_003760058.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Sarcophilus
harrisii]
gi|395823105|ref|XP_003784837.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Otolemur
garnettii]
gi|397489347|ref|XP_003815691.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Pan paniscus]
gi|403265201|ref|XP_003924835.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 isoform 1
[Saimiri boliviensis boliviensis]
gi|403265203|ref|XP_003924836.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 isoform 2
[Saimiri boliviensis boliviensis]
gi|410977436|ref|XP_003995111.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Felis catus]
gi|426253705|ref|XP_004020533.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Ovis aries]
gi|51338665|sp|P62314.1|SMD1_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=Sm-D autoantigen; AltName: Full=snRNP
core protein D1
gi|60413325|sp|P62315.1|SMD1_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=Sm-D autoantigen; AltName: Full=snRNP
core protein D1
gi|75076018|sp|Q4R5F6.1|SMD1_MACFA RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|109894869|sp|Q3ZC10.1|SMD1_BOVIN RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|6980598|pdb|1B34|A Chain A, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
gi|225734042|pdb|3CW1|B Chain B, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734051|pdb|3CW1|M Chain M, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734060|pdb|3CW1|N Chain N, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734069|pdb|3CW1|O Chain O, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583602|pdb|3PGW|X Chain X, Crystal Structure Of Human U1 Snrnp
gi|315583611|pdb|3PGW|U Chain U, Crystal Structure Of Human U1 Snrnp
gi|332639434|pdb|2Y9A|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639441|pdb|2Y9A|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639448|pdb|2Y9A|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639458|pdb|2Y9B|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639465|pdb|2Y9B|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639472|pdb|2Y9B|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639482|pdb|2Y9C|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639489|pdb|2Y9C|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639496|pdb|2Y9C|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639506|pdb|2Y9D|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639513|pdb|2Y9D|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639520|pdb|2Y9D|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781210|pdb|3S6N|A Chain A, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302196|pdb|4F7U|A Chain A, Macromolecular Machine 6
gi|444302198|pdb|4F7U|C Chain C, Macromolecular Machine 6
gi|453055422|pdb|1VU2|A Chain A, The 8s Snrnp Assembly Intermediate
gi|453055430|pdb|1VU2|I Chain I, The 8s Snrnp Assembly Intermediate
gi|453055438|pdb|1VU2|Q Chain Q, The 8s Snrnp Assembly Intermediate
gi|453055446|pdb|1VU2|Y Chain Y, The 8s Snrnp Assembly Intermediate
gi|453055454|pdb|1VU2|GG Chain g, The 8s Snrnp Assembly Intermediate
gi|453055462|pdb|1VU2|OO Chain o, The 8s Snrnp Assembly Intermediate
gi|453055474|pdb|1VU2|WW Chain w, The 8s Snrnp Assembly Intermediate
gi|453055478|pdb|1VU3|A Chain A, The 8s Snrnp Assembly Intermediate
gi|453055486|pdb|1VU3|I Chain I, The 8s Snrnp Assembly Intermediate
gi|453055494|pdb|1VU3|Q Chain Q, The 8s Snrnp Assembly Intermediate
gi|453055502|pdb|1VU3|Y Chain Y, The 8s Snrnp Assembly Intermediate
gi|453055510|pdb|1VU3|GG Chain g, The 8s Snrnp Assembly Intermediate
gi|453055518|pdb|1VU3|OO Chain o, The 8s Snrnp Assembly Intermediate
gi|453056010|pdb|4F77|I Chain I, The 8s Snrnp Assembly Intermediate
gi|453056018|pdb|4F77|A Chain A, The 8s Snrnp Assembly Intermediate
gi|453056026|pdb|4F77|Q Chain Q, The 8s Snrnp Assembly Intermediate
gi|453056034|pdb|4F77|Y Chain Y, The 8s Snrnp Assembly Intermediate
gi|453056042|pdb|4F77|GG Chain g, The 8s Snrnp Assembly Intermediate
gi|453056050|pdb|4F77|OO Chain o, The 8s Snrnp Assembly Intermediate
gi|453056062|pdb|4F77|WW Chain w, The 8s Snrnp Assembly Intermediate
gi|338265|gb|AAA36620.1| small nuclear riboprotein Sm-D [Homo sapiens]
gi|705366|gb|AAA85339.1| small nuclear ribonucleoprotein [Homo sapiens]
gi|1256741|gb|AAA96493.1| Sm-D autoantigen [Mus musculus]
gi|12804599|gb|AAH01721.1| Small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|12838127|dbj|BAB24092.1| unnamed protein product [Mus musculus]
gi|12841366|dbj|BAB25178.1| unnamed protein product [Mus musculus]
gi|12847588|dbj|BAB27628.1| unnamed protein product [Mus musculus]
gi|12850214|dbj|BAB28635.1| unnamed protein product [Mus musculus]
gi|19354162|gb|AAH24875.1| Small nuclear ribonucleoprotein D1 [Mus musculus]
gi|48734707|gb|AAH72427.1| Small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|49457472|emb|CAG47035.1| SNRPD1 [Homo sapiens]
gi|67970653|dbj|BAE01669.1| unnamed protein product [Macaca fascicularis]
gi|73586929|gb|AAI02988.1| Small nuclear ribonucleoprotein D1 polypeptide 16kDa [Bos taurus]
gi|74144965|dbj|BAE22192.1| unnamed protein product [Mus musculus]
gi|74193588|dbj|BAE22759.1| unnamed protein product [Mus musculus]
gi|119621535|gb|EAX01130.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|149031722|gb|EDL86672.1| small nuclear ribonucleoprotein D1 (predicted) [Rattus
norvegicus]
gi|187469818|gb|AAI67095.1| Small nuclear ribonucleoprotein D1 [Rattus norvegicus]
gi|197127450|gb|ACH43948.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|197127451|gb|ACH43949.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|197129948|gb|ACH46446.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|197692155|dbj|BAG70041.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|197692401|dbj|BAG70164.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|208967432|dbj|BAG73730.1| small nuclear ribonucleoprotein D1 polypeptide [synthetic
construct]
gi|296473819|tpg|DAA15934.1| TPA: small nuclear ribonucleoprotein Sm D1 [Bos taurus]
gi|344251470|gb|EGW07574.1| Small nuclear ribonucleoprotein Sm D1 [Cricetulus griseus]
gi|380815842|gb|AFE79795.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|383420995|gb|AFH33711.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|384948966|gb|AFI38088.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|410215894|gb|JAA05166.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
gi|410253718|gb|JAA14826.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
gi|410297902|gb|JAA27551.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
gi|410328399|gb|JAA33146.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
Length = 119
Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKK 91
>gi|60832252|gb|AAX37003.1| small nuclear ribonucleoprotein D1 polypeptide [synthetic
construct]
Length = 120
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKK 91
>gi|326922125|ref|XP_003207302.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein
Sm D1-like [Meleagris gallopavo]
Length = 118
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 5 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 64
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 65 RYFILPDSLPLDTLLVDVEPKVKSKK 90
>gi|195019728|ref|XP_001985042.1| GH14721 [Drosophila grimshawi]
gi|193898524|gb|EDV97390.1| GH14721 [Drosophila grimshawi]
Length = 124
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/80 (81%), Positives = 75/80 (93%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVT+ELKNGTQ+HGTI GVDVAMNTHLK+VKMT+K ++P L+S+S+RGNNI
Sbjct: 6 FLMKLSHETVTVELKNGTQIHGTITGVDVAMNTHLKSVKMTIKNRDPVHLESLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RY+ILPDSLPLETLLIDD P
Sbjct: 66 RYFILPDSLPLETLLIDDTP 85
>gi|332225775|ref|XP_003262059.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Nomascus
leucogenys]
Length = 119
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTILGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKK 91
>gi|351709761|gb|EHB12680.1| Small nuclear ribonucleoprotein Sm D1, partial [Heterocephalus
glaber]
Length = 115
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 2 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 61
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 62 RYFILPDSLPLDTLLVDVEPKVKSKK 87
>gi|449269384|gb|EMC80160.1| Small nuclear ribonucleoprotein Sm D1, partial [Columba livia]
Length = 117
Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 4 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 63
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 64 RYFILPDSLPLDTLLVDVEPKVKSKK 89
>gi|440903491|gb|ELR54142.1| Small nuclear ribonucleoprotein Sm D1, partial [Bos grunniens
mutus]
Length = 117
Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 4 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 63
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 64 RYFILPDSLPLDTLLVDVEPKVKSKK 89
>gi|321455706|gb|EFX66832.1| hypothetical protein DAPPUDRAFT_302421 [Daphnia pulex]
Length = 125
Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/80 (82%), Positives = 74/80 (92%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETV IELKNGTQVHGTI GVDVAMNTHLK VKMTVK ++P L+++S+RGNNI
Sbjct: 6 FLMKLSHETVIIELKNGTQVHGTITGVDVAMNTHLKAVKMTVKNRDPVQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RYYILPDSLPLETLL+DD+P
Sbjct: 66 RYYILPDSLPLETLLLDDSP 85
>gi|195126373|ref|XP_002007645.1| GI12268 [Drosophila mojavensis]
gi|193919254|gb|EDW18121.1| GI12268 [Drosophila mojavensis]
Length = 124
Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 65/80 (81%), Positives = 75/80 (93%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVT+ELKNGTQ+HGTI GVDVAMNTHLK+VKMT+K ++P L+S+S+RGNNI
Sbjct: 6 FLMKLSHETVTVELKNGTQIHGTITGVDVAMNTHLKSVKMTIKNRDPVHLESLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RY+ILPDSLPLETLLIDD P
Sbjct: 66 RYFILPDSLPLETLLIDDTP 85
>gi|281354424|gb|EFB30008.1| hypothetical protein PANDA_018320 [Ailuropoda melanoleuca]
Length = 90
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 2 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 61
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 62 RYFILPDSLPLDTLLVDVEPKVKSKK 87
>gi|355701859|gb|EHH29212.1| Small nuclear ribonucleoprotein Sm D1, partial [Macaca mulatta]
gi|355754930|gb|EHH58797.1| Small nuclear ribonucleoprotein Sm D1, partial [Macaca
fascicularis]
Length = 119
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKK 91
>gi|328720327|ref|XP_003247002.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Acyrthosiphon pisum]
Length = 134
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 77/87 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVT+ELKNGT VHGTI GVDVAMNTHLKTVKMT+K +P D++S+RGNNI
Sbjct: 6 FLMKLSHETVTLELKNGTSVHGTITGVDVAMNTHLKTVKMTMKNNQPIHYDTLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRD 89
RY+ILPDSL LETLL+DDAP+S+ R+
Sbjct: 66 RYFILPDSLTLETLLVDDAPKSRLNRN 92
>gi|291401386|ref|XP_002717263.1| PREDICTED: small nuclear ribonucleoprotein D1 polypeptide
16kDa-like [Oryctolagus cuniculus]
Length = 144
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 31 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 90
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
Y+ILPDSLPL+TLL+D P+ K K+
Sbjct: 91 CYFILPDSLPLDTLLVDVEPKVKSKK 116
>gi|241644572|ref|XP_002409661.1| small nuclear ribonucleoprotein Sm D1, putative [Ixodes
scapularis]
gi|215501397|gb|EEC10891.1| small nuclear ribonucleoprotein Sm D1, putative [Ixodes
scapularis]
Length = 111
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/78 (85%), Positives = 72/78 (92%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
MKLSHETVTIELKNGTQVHGTI GVDVAMNTHLK VKMT+K +EP LDS+S+RGNNIRY
Sbjct: 1 MKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTMKNREPVQLDSLSIRGNNIRY 60
Query: 65 YILPDSLPLETLLIDDAP 82
Y+LPDSLPLETLLIDD P
Sbjct: 61 YLLPDSLPLETLLIDDTP 78
>gi|389609361|dbj|BAM18292.1| small ribonucleoprotein particle protein SmD1 [Papilio xuthus]
Length = 125
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 79/87 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNG+ VHGTI GVDVAMNTHLK VK+T+K KE L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNKEELQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRD 89
RYY+LPDSLP+ETLL+DDAP+ +GKR+
Sbjct: 66 RYYLLPDSLPIETLLLDDAPKGRGKRE 92
>gi|91093211|ref|XP_969739.1| PREDICTED: similar to small nuclear ribonucleoprotein at 69D
CG10753-PA [Tribolium castaneum]
gi|270016480|gb|EFA12926.1| hypothetical protein TcasGA2_TC010472 [Tribolium castaneum]
Length = 121
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/80 (82%), Positives = 73/80 (91%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVT+ELKNGTQVHGTI GVDVAMNTHLK VK+TVK + P LD++++RGNNI
Sbjct: 6 FLMKLSHETVTMELKNGTQVHGTITGVDVAMNTHLKAVKVTVKNRNPVNLDTLTVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RYYILPDSLPLETLLIDD P
Sbjct: 66 RYYILPDSLPLETLLIDDTP 85
>gi|198437112|ref|XP_002129287.1| PREDICTED: similar to AGAP007246-PA isoform 1 [Ciona
intestinalis]
gi|198437114|ref|XP_002129303.1| PREDICTED: similar to AGAP007246-PA isoform 2 [Ciona
intestinalis]
Length = 121
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/82 (78%), Positives = 75/82 (91%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVD+ MNTHLK+VKMTVK ++P LD++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDICMNTHLKSVKMTVKNRDPVNLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRS 84
RYYILPDSLPL+TLL+D+ P+
Sbjct: 66 RYYILPDSLPLDTLLVDEGPKQ 87
>gi|32959908|emb|CAE11897.1| small nuclear ribonucleoprotein Sm D1 [Homo sapiens]
Length = 119
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETV IELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 6 FLMKLSHETVIIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKK 91
>gi|114050791|ref|NP_001040404.1| small nuclear ribonucleoprotein Sm D1 [Bombyx mori]
gi|95102768|gb|ABF51325.1| small nuclear ribonucleoprotein Sm D1 [Bombyx mori]
Length = 126
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 77/87 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNG+ VHGTI GVDVAMNTHLK VK+T+K +E L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRD 89
RYY+LPDSLPLET LIDD P+ KGKR+
Sbjct: 66 RYYLLPDSLPLETWLIDDTPKGKGKRE 92
>gi|239789452|dbj|BAH71351.1| ACYPI007411 [Acyrthosiphon pisum]
Length = 155
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 75/83 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVT+ELKNGT VHGTI GVDVAMNTHLK VKMTV+ ++P +++S+RGNNI
Sbjct: 6 FLMKLSHETVTLELKNGTSVHGTITGVDVAMNTHLKAVKMTVRNQQPIHYETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSK 85
RYYILPDSL LETLL+DDAP+S+
Sbjct: 66 RYYILPDSLTLETLLVDDAPKSR 88
>gi|125540070|gb|EAY86465.1| hypothetical protein OsI_07847 [Oryza sativa Indica Group]
Length = 114
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL++D PR K K+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRVKAKK 91
>gi|297602887|ref|NP_001053049.2| Os04g0470200 [Oryza sativa Japonica Group]
gi|38344744|emb|CAE03048.2| OSJNBa0089K21.2 [Oryza sativa Japonica Group]
gi|116310018|emb|CAH67043.1| OSIGBa0124N08.5 [Oryza sativa Indica Group]
gi|222629031|gb|EEE61163.1| hypothetical protein OsJ_15131 [Oryza sativa Japonica Group]
gi|255675540|dbj|BAF14963.2| Os04g0470200 [Oryza sativa Japonica Group]
Length = 114
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL++D PR K K+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRVKAKK 91
>gi|444723132|gb|ELW63794.1| Small nuclear ribonucleoprotein Sm D1 [Tupaia chinensis]
Length = 124
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 86/123 (69%), Gaps = 1/123 (0%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
MKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNIRY
Sbjct: 1 MKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRY 60
Query: 65 YILPDSLPLETLLIDDAPRSKG-KRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGGPRGR 123
+ILPDSLPL+TLL+D P+ K KR++ A R G R G G + +
Sbjct: 61 FILPDSLPLDTLLVDVEPKVKSKKREADLRNSDVLAFVRFGLHARMCVIGVLFTGPSQLK 120
Query: 124 GGP 126
P
Sbjct: 121 VNP 123
>gi|440897495|gb|ELR49167.1| hypothetical protein M91_06507, partial [Bos grunniens mutus]
Length = 121
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FL KLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 1 FLTKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 60
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 61 RYFILPDSLPLDTLLVDVEPKVKSKK 86
>gi|71018117|ref|XP_759289.1| hypothetical protein UM03142.1 [Ustilago maydis 521]
gi|46099139|gb|EAK84372.1| hypothetical protein UM03142.1 [Ustilago maydis 521]
Length = 192
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/99 (68%), Positives = 84/99 (84%), Gaps = 3/99 (3%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++E+VTIELKNGT VHGT+ GVD+ MNTHLKTVKMTV+G+ TLD++S+RGNNI
Sbjct: 73 FLMKLNNESVTIELKNGTVVHGTVTGVDIQMNTHLKTVKMTVRGRPAVTLDTLSIRGNNI 132
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARG 101
RY+ILPD+LPL+ LL+DDAP+ KGK R+ A GARG
Sbjct: 133 RYWILPDALPLDMLLVDDAPKPKGK---RKDPVARGARG 168
>gi|332028488|gb|EGI68529.1| Putative small nuclear ribonucleoprotein Sm D1 [Acromyrmex
echinatior]
Length = 116
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/78 (85%), Positives = 72/78 (92%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
MKLSHETVTIELKNGTQV GTI GVDVAMNTHLKTVKMT+K +EP L+++SLRGNNIRY
Sbjct: 1 MKLSHETVTIELKNGTQVTGTITGVDVAMNTHLKTVKMTIKNREPIQLETLSLRGNNIRY 60
Query: 65 YILPDSLPLETLLIDDAP 82
YILPDSLPLETLLIDD P
Sbjct: 61 YILPDSLPLETLLIDDTP 78
>gi|326368279|ref|NP_001191919.1| small nuclear ribonucleoprotein Sm D1 [Acyrthosiphon pisum]
Length = 135
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 75/83 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVT+ELKNGT VHGTI GVDVAMNTHLK VKMTV+ ++P +++S+RGNNI
Sbjct: 6 FLMKLSHETVTLELKNGTSVHGTITGVDVAMNTHLKAVKMTVRNQQPIHYETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSK 85
RYYILPDSL LETLL+DDAP+S+
Sbjct: 66 RYYILPDSLTLETLLVDDAPKSR 88
>gi|239789454|dbj|BAH71352.1| ACYPI007411 [Acyrthosiphon pisum]
Length = 122
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 75/83 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVT+ELKNGT VHGTI GVDVAMNTHLK VKMTV+ ++P +++S+RGNNI
Sbjct: 6 FLMKLSHETVTLELKNGTSVHGTITGVDVAMNTHLKAVKMTVRNQQPIHYETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSK 85
RYYILPDSL LETLL+DDAP+S+
Sbjct: 66 RYYILPDSLTLETLLVDDAPKSR 88
>gi|15231485|ref|NP_187416.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana]
gi|334185166|ref|NP_001189837.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana]
gi|6466942|gb|AAF13077.1|AC009176_4 putative small nuclear ribonucleoprotein (Sm-D1) [Arabidopsis
thaliana]
gi|17978995|gb|AAL47458.1| AT3g07590/MLP3_4 [Arabidopsis thaliana]
gi|21593161|gb|AAM65110.1| putative small nuclear ribonucleoprotein Sm-D1 [Arabidopsis
thaliana]
gi|21700847|gb|AAM70547.1| AT3g07590/MLP3_4 [Arabidopsis thaliana]
gi|332641049|gb|AEE74570.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana]
gi|332641050|gb|AEE74571.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana]
Length = 114
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVDV+MNTHLKTVKM++KGK P TLD +SLRGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL++D PR K K+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRVKPKK 91
>gi|325188130|emb|CCA22672.1| small nuclear ribonucleoprotein Sm D1 putative [Albugo laibachii
Nc14]
Length = 114
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 74/85 (87%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLS+ETVTIELKNGT VHGTI GVD++MNTHLK VKMT KGK P TLD++S+RGNNI
Sbjct: 6 FLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKMTAKGKNPQTLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSL L+ LLIDD PR K K
Sbjct: 66 RYYILPDSLNLDVLLIDDTPREKVK 90
>gi|115446977|ref|NP_001047268.1| Os02g0586500 [Oryza sativa Japonica Group]
gi|46806276|dbj|BAD17484.1| putative small nuclear ribonucleoprotein D1 polypeptide 16kDa;
snRNP core protein D1; Sm-D autoantigen [Oryza sativa
Japonica Group]
gi|113536799|dbj|BAF09182.1| Os02g0586500 [Oryza sativa Japonica Group]
gi|125582674|gb|EAZ23605.1| hypothetical protein OsJ_07305 [Oryza sativa Japonica Group]
Length = 114
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P T D +S+RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTFDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL++D PR K K+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRVKAKK 91
>gi|83272157|gb|ABC00745.1| putative small nuclear ribonucleoprotein D1 [Brassica napus]
Length = 118
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVDV+MNTHLKTVKMT+KGK P T+D +SLRGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMTLKGKNPVTMDHLSLRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL++D PR K K+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRLKPKK 91
>gi|440804582|gb|ELR25459.1| small nuclear ribonucleoprotein Sm D1, putative [Acanthamoeba
castellanii str. Neff]
Length = 125
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 84/107 (78%), Gaps = 3/107 (2%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLS+ETVTIELKNGT VHGTI GVD++MNTHLK VK+T+KGK P LD++S+RGNNI
Sbjct: 6 FLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNPINLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRG 109
RYY+LPD+L L+TLL+DD PR K +++ G AG RG G G
Sbjct: 66 RYYLLPDTLNLDTLLVDDTPRPKP---TKKVGEAGVPRGDVAAAGEG 109
>gi|327277806|ref|XP_003223654.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like, partial
[Anolis carolinensis]
Length = 94
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHET+TIELKNGTQVHGTI GVDV+MNT+LK VKMT+K +EP L+++S+R NNI
Sbjct: 6 FLMKLSHETITIELKNGTQVHGTITGVDVSMNTYLKAVKMTLKNREPIQLETLSIRSNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKK 91
>gi|156336212|ref|XP_001619663.1| hypothetical protein NEMVEDRAFT_v1g223956 [Nematostella
vectensis]
gi|156203311|gb|EDO27563.1| predicted protein [Nematostella vectensis]
Length = 128
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/80 (78%), Positives = 74/80 (92%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGT +HGTI GVD++MNTHLKTVKMTVK +EP L+S+S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTVIHGTITGVDMSMNTHLKTVKMTVKNREPMQLESLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RY+ILP+SLPL+TLL+DD P
Sbjct: 66 RYFILPESLPLDTLLVDDTP 85
>gi|148674280|gb|EDL06227.1| mCG21971 [Mus musculus]
Length = 134
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S++G NI
Sbjct: 21 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIQGTNI 80
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K ++
Sbjct: 81 RYFILPDSLPLDTLLVDVEPKVKSRK 106
>gi|336375284|gb|EGO03620.1| hypothetical protein SERLA73DRAFT_175163 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388346|gb|EGO29490.1| hypothetical protein SERLADRAFT_457290 [Serpula lacrymans var.
lacrymans S7.9]
Length = 121
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 80/86 (93%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNG+ VHGTI GVD+ MNTHLKTVKMT + ++PT+LDS+S+RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGSVVHGTITGVDMQMNTHLKTVKMTTRNRDPTSLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY++LPD+LPL+TLL+DDAP+ KG++
Sbjct: 66 RYFVLPDALPLDTLLVDDAPKPKGRK 91
>gi|196003304|ref|XP_002111519.1| hypothetical protein TRIADDRAFT_55621 [Trichoplax adhaerens]
gi|190585418|gb|EDV25486.1| hypothetical protein TRIADDRAFT_55621 [Trichoplax adhaerens]
Length = 130
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 78/86 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK++HETVTIELKNGT VHGT+ GVD++MNTHLK+VKMTVK +EP TLD++++RGNNI
Sbjct: 6 FLMKINHETVTIELKNGTVVHGTVWGVDMSMNTHLKSVKMTVKNREPVTLDTLAIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPD+L L+ LL+DD+P+ K K+
Sbjct: 66 RYFILPDNLALDQLLVDDSPKMKAKK 91
>gi|221125651|ref|XP_002163302.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Hydra
magnipapillata]
Length = 128
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 78/87 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVT+ELKNGT HGTI GVD++MNTHLK VKMT+KGK+P L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTVELKNGTVAHGTITGVDMSMNTHLKAVKMTLKGKDPVQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRD 89
RY+ILP+SLPL+TLL+DD P+SK + D
Sbjct: 66 RYFILPESLPLDTLLVDDEPKSKARGD 92
>gi|297829310|ref|XP_002882537.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328377|gb|EFH58796.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 102
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVDV+MNTHLKTVKM++KGK P T+D +SLRGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTIDHLSLRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL++D PR K K+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRVKPKK 91
>gi|358410942|ref|XP_001254398.4| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Bos taurus]
gi|359063093|ref|XP_002685437.2| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Bos taurus]
Length = 118
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FL KLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S++GNNI
Sbjct: 6 FLTKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIQGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKK 91
>gi|296490547|tpg|DAA32660.1| TPA: small nuclear ribonucleoprotein D1 polypeptide 16kDa-like
[Bos taurus]
Length = 134
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FL KLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S++GNNI
Sbjct: 6 FLTKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIQGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKK 91
>gi|164657680|ref|XP_001729966.1| hypothetical protein MGL_2952 [Malassezia globosa CBS 7966]
gi|159103860|gb|EDP42752.1| hypothetical protein MGL_2952 [Malassezia globosa CBS 7966]
Length = 120
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 78/86 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++E+VTIELKNGT +HGT+ GVDV MNTHLK VKMTV+G EP +LD++S+RGNN
Sbjct: 6 FLMKLNNESVTIELKNGTVIHGTVTGVDVQMNTHLKAVKMTVRGGEPISLDTLSIRGNNT 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPD+LPL+TLL+DDAPR KGKR
Sbjct: 66 RYWILPDALPLDTLLVDDAPRPKGKR 91
>gi|389747560|gb|EIM88738.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 123
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 79/86 (91%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNG+ VHGTI GVD+ MNTHLKTVKMT + ++P++LDS+S+RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVKMTARNRDPSSLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY++LPDSLPL+TLL+DDAP+ K K+
Sbjct: 66 RYFVLPDSLPLDTLLVDDAPKPKSKK 91
>gi|358420583|ref|XP_003584662.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Bos
taurus]
Length = 111
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 75/86 (87%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
Y+ILPDSLPL+TLL+ P+ K K+
Sbjct: 66 WYFILPDSLPLDTLLVHVEPKVKSKK 91
>gi|340381476|ref|XP_003389247.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Amphimedon queenslandica]
Length = 119
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 78/86 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL+HETVTIELKNGT VHGT+ GVD++MNTHLK+VK+T+KG+EP LD++SLRGNNI
Sbjct: 6 FLMKLNHETVTIELKNGTVVHGTVAGVDMSMNTHLKSVKLTLKGREPLALDTLSLRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILP+S+PL+TLL+DD R K K+
Sbjct: 66 RYYILPESVPLDTLLVDDTTRRKTKK 91
>gi|363730104|ref|XP_001235936.2| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Gallus gallus]
Length = 112
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/84 (75%), Positives = 75/84 (89%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
MKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNIRY
Sbjct: 1 MKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRY 60
Query: 65 YILPDSLPLETLLIDDAPRSKGKR 88
+ILPDSLPL+TLL+D P+ K K+
Sbjct: 61 FILPDSLPLDTLLVDVEPKVKSKK 84
>gi|72005990|ref|XP_785584.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Strongylocentrotus purpuratus]
Length = 132
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK+VK+T K +E L+S+S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKSVKLTPKNRETQQLESLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSLPL+ LL+DD P+++ ++
Sbjct: 66 RYYILPDSLPLDQLLVDDTPKARMRK 91
>gi|392562210|gb|EIW55391.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 122
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 79/86 (91%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVT+ELKNG+ +HGTI GVD+ MNTHLKTVKMT + +EPT+LDS+S+RGNNI
Sbjct: 6 FLMKLNNETVTVELKNGSVIHGTITGVDMQMNTHLKTVKMTARNREPTSLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY++LPD+LPL+TLL+DDAP+ K ++
Sbjct: 66 RYFVLPDALPLDTLLVDDAPKPKSRK 91
>gi|156369567|ref|XP_001628047.1| predicted protein [Nematostella vectensis]
gi|156215013|gb|EDO35984.1| predicted protein [Nematostella vectensis]
Length = 120
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/80 (78%), Positives = 74/80 (92%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGT +HGTI GVD++MNTHLKTVKMTVK +EP L+S+S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTVIHGTITGVDMSMNTHLKTVKMTVKNREPMQLESLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RY+ILP+SLPL+TLL+DD P
Sbjct: 66 RYFILPESLPLDTLLVDDTP 85
>gi|149250230|ref|XP_001481216.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Mus musculus]
gi|309264642|ref|XP_003086326.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Mus
musculus]
Length = 119
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S++G NI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIQGTNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K ++
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSRK 91
>gi|357149831|ref|XP_003575247.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Brachypodium distachyon]
Length = 114
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 78/88 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDS 90
RYYILPDSL LETLLI++ PR K K+ +
Sbjct: 66 RYYILPDSLNLETLLIEETPRVKPKKPT 93
>gi|302692404|ref|XP_003035881.1| hypothetical protein SCHCODRAFT_74336 [Schizophyllum commune
H4-8]
gi|300109577|gb|EFJ00979.1| hypothetical protein SCHCODRAFT_74336 [Schizophyllum commune
H4-8]
Length = 121
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 78/86 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNG+ VHGTI GVD+ MNTHLKTVKMT + ++PT LDS+SLRGN I
Sbjct: 6 FLMKLNNETVSIELKNGSVVHGTITGVDMQMNTHLKTVKMTTRNRDPTHLDSLSLRGNTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPD+LPL+TLL+DDAP+ KGKR
Sbjct: 66 RYFILPDALPLDTLLVDDAPKPKGKR 91
>gi|443897891|dbj|GAC75230.1| small nuclear ribonucleoprotein SMD1 and related snRNPs
[Pseudozyma antarctica T-34]
Length = 124
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/94 (68%), Positives = 80/94 (85%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++E+V+IELKNGT VHGT+ GVD+ MNTHLKTVKMTV+G+ TLD++S+RGNNI
Sbjct: 6 FLMKLNNESVSIELKNGTVVHGTVTGVDIQMNTHLKTVKMTVRGRPAVTLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGA 96
RY+ILPD+LPL+ LL+DDAP+ KGKR GA
Sbjct: 66 RYWILPDALPLDMLLVDDAPKPKGKRKDPAARGA 99
>gi|393212701|gb|EJC98200.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 119
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 85/98 (86%), Gaps = 1/98 (1%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNG+ VHGTI GVD+ MNTHLKTVKMT++ ++P +LD++S+RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVKMTMRNRDPQSLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKG-KRDSRRGGGAGGA 99
RY++LPD+LPL+TLL+DDAP+ K K++ RG G G A
Sbjct: 66 RYFVLPDALPLDTLLVDDAPKPKNRKKEEVRGRGRGRA 103
>gi|409048487|gb|EKM57965.1| hypothetical protein PHACADRAFT_251891 [Phanerochaete carnosa
HHB-10118-sp]
Length = 122
Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 79/86 (91%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNG+ VHGTI GVD+ MNTHLKTVKMT + ++PT+LDS+S+RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVKMTARNRDPTSLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY++LPD+LPL+TLL+DDAP+ K ++
Sbjct: 66 RYFVLPDALPLDTLLVDDAPKPKNRK 91
>gi|301090235|ref|XP_002895342.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora infestans
T30-4]
gi|262100456|gb|EEY58508.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora infestans
T30-4]
Length = 105
Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/83 (80%), Positives = 73/83 (87%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
MKLS+ETVTIELKNGT VHGTI GVD++MNTHLK VKMTVKGK P LDS+S+RGNNIRY
Sbjct: 1 MKLSNETVTIELKNGTLVHGTITGVDISMNTHLKAVKMTVKGKNPVNLDSLSIRGNNIRY 60
Query: 65 YILPDSLPLETLLIDDAPRSKGK 87
YILPDSL L+TLLIDD PR K K
Sbjct: 61 YILPDSLNLDTLLIDDTPREKVK 83
>gi|224066521|ref|XP_002302121.1| predicted protein [Populus trichocarpa]
gi|118482633|gb|ABK93236.1| unknown [Populus trichocarpa]
gi|118488779|gb|ABK96200.1| unknown [Populus trichocarpa]
gi|222843847|gb|EEE81394.1| predicted protein [Populus trichocarpa]
Length = 115
Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+TVKGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTVKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL+++ PR K K+
Sbjct: 66 RYYILPDSLNLETLLVEETPRVKPKK 91
>gi|312077154|ref|XP_003141178.1| small nuclear ribonucleoprotein sm d1 [Loa loa]
gi|307763657|gb|EFO22891.1| small nuclear ribonucleoprotein sm d1 [Loa loa]
Length = 123
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/118 (59%), Positives = 82/118 (69%), Gaps = 24/118 (20%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL+HE+VTIELKNGT V GTI GVDVAMNTHL+TVKMT+K +EP +LDS+S+RGNNI
Sbjct: 6 FLMKLAHESVTIELKNGTLVTGTIVGVDVAMNTHLRTVKMTLKNREPVSLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGGP 120
RY ILPD++PL+TLL+DD PR K RGGRGR P
Sbjct: 66 RYIILPDTIPLDTLLVDDEPRKK------------------------PARGGRGRAAP 99
>gi|357440765|ref|XP_003590660.1| Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula]
gi|355479708|gb|AES60911.1| Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula]
Length = 114
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 78/86 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL+++APR K K+
Sbjct: 66 RYYILPDSLNLETLLVEEAPRVKPKK 91
>gi|388508844|gb|AFK42488.1| unknown [Medicago truncatula]
Length = 115
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 79/88 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDS 90
RYYILPDSL LETLL+++APR K K+ +
Sbjct: 66 RYYILPDSLNLETLLVEEAPRVKPKKPT 93
>gi|409074771|gb|EKM75161.1| hypothetical protein AGABI1DRAFT_80275 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 122
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 78/86 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVT+ELKNG+ VHGTI GVD+ MNTHLKTVKMT + +EP TLDS+S+RGNNI
Sbjct: 6 FLMKLNNETVTVELKNGSLVHGTITGVDMQMNTHLKTVKMTTRNREPQTLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ LPD+LPL+TLL+DDAP+ KG++
Sbjct: 66 RYFTLPDALPLDTLLVDDAPKPKGRK 91
>gi|426195101|gb|EKV45031.1| hypothetical protein AGABI2DRAFT_73218, partial [Agaricus
bisporus var. bisporus H97]
Length = 118
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 78/86 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVT+ELKNG+ VHGTI GVD+ MNTHLKTVKMT + +EP TLDS+S+RGNNI
Sbjct: 2 FLMKLNNETVTVELKNGSLVHGTITGVDMQMNTHLKTVKMTTRNREPQTLDSLSIRGNNI 61
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ LPD+LPL+TLL+DDAP+ KG++
Sbjct: 62 RYFTLPDALPLDTLLVDDAPKPKGRK 87
>gi|170095247|ref|XP_001878844.1| small nuclear ribonucleoprotein SnRNP [Laccaria bicolor
S238N-H82]
gi|164646148|gb|EDR10394.1| small nuclear ribonucleoprotein SnRNP [Laccaria bicolor
S238N-H82]
Length = 127
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 79/86 (91%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNG VHGTI GVD+ MNTHLKTVKMT++ ++PTTLDS+S+RGN +
Sbjct: 6 FLMKLNNETVTIELKNGCIVHGTITGVDMQMNTHLKTVKMTMRNRDPTTLDSLSIRGNTV 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY++LPD+LPL+TLL+DDAP+ KG++
Sbjct: 66 RYFVLPDALPLDTLLVDDAPKPKGRK 91
>gi|242065592|ref|XP_002454085.1| hypothetical protein SORBIDRAFT_04g024330 [Sorghum bicolor]
gi|195604664|gb|ACG24162.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|238011798|gb|ACR36934.1| unknown [Zea mays]
gi|241933916|gb|EES07061.1| hypothetical protein SORBIDRAFT_04g024330 [Sorghum bicolor]
gi|413922841|gb|AFW62773.1| Small nuclear ribonucleoprotein Sm D1 isoform 1 [Zea mays]
gi|413922842|gb|AFW62774.1| Small nuclear ribonucleoprotein Sm D1 isoform 2 [Zea mays]
Length = 114
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL+++ PR K K+
Sbjct: 66 RYYILPDSLNLETLLVEETPRVKPKK 91
>gi|402589501|gb|EJW83433.1| small nuclear ribonucleoprotein Sm D1 [Wuchereria bancrofti]
Length = 123
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL+HE+VTIELKNGT V GTI GVDVAMNTHL+TVKMT+K +EP +LDS+S+RGNNI
Sbjct: 6 FLMKLAHESVTIELKNGTLVTGTIVGVDVAMNTHLRTVKMTLKNREPVSLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY ILPD++PL+TLL+DD PR K R
Sbjct: 66 RYIILPDTIPLDTLLVDDEPRKKPAR 91
>gi|326511932|dbj|BAJ95947.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 114
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 78/88 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGTTVHGTIIGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDS 90
RYYILPDSL LETLL+++ PR K K+ +
Sbjct: 66 RYYILPDSLNLETLLVEETPRVKPKKPT 93
>gi|116784296|gb|ABK23291.1| unknown [Picea sitchensis]
Length = 114
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV IELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVNIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKSPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL++D P+ K KR
Sbjct: 66 RYYILPDSLNLETLLVEDTPKIKPKR 91
>gi|226507836|ref|NP_001151154.1| LOC100284787 [Zea mays]
gi|195644674|gb|ACG41805.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
Length = 116
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 78/88 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDS 90
RYYILPDSL LETLL+++ PR K K+ +
Sbjct: 66 RYYILPDSLNLETLLVEETPRVKPKKPT 93
>gi|226496545|ref|NP_001148353.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|195618318|gb|ACG30989.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|414586802|tpg|DAA37373.1| TPA: small nuclear ribonucleoprotein Sm D1 [Zea mays]
Length = 115
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 78/88 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDS 90
RYYILPDSL LETLL+++ PR K K+ +
Sbjct: 66 RYYILPDSLNLETLLVEETPRVKPKKPT 93
>gi|224082616|ref|XP_002306766.1| predicted protein [Populus trichocarpa]
gi|222856215|gb|EEE93762.1| predicted protein [Populus trichocarpa]
Length = 112
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+TVKGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTVKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLLI++ P+ K K+
Sbjct: 66 RYYILPDSLNLETLLIEETPKVKPKK 91
>gi|296086730|emb|CBI32365.3| unnamed protein product [Vitis vinifera]
Length = 144
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 78/88 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 36 FLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 95
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDS 90
RYYILPDSL LETLL+++ PR K K+ +
Sbjct: 96 RYYILPDSLNLETLLVEETPRVKPKKPT 123
>gi|296473074|tpg|DAA15189.1| TPA: small nuclear ribonucleoprotein D1 polypeptide 16kDa-like
[Bos taurus]
Length = 119
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 75/86 (87%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI V+V+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITCVNVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+ P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVGVEPKVKSKK 91
>gi|356504916|ref|XP_003521240.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 1
[Glycine max]
gi|356504918|ref|XP_003521241.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Glycine max]
Length = 114
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 78/86 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL+++AP+ K K+
Sbjct: 66 RYYILPDSLNLETLLVEEAPKIKPKK 91
>gi|319411531|emb|CBQ73575.1| probable small nuclear ribonucleoprotein SNRPD1 [Sporisorium
reilianum SRZ2]
Length = 125
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 78/86 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++E+VTIELKNGT VHGT+ GVD+ MNTHLKTVKM+V+G+ TLD++S+RGNNI
Sbjct: 6 FLMKLNNESVTIELKNGTVVHGTVTGVDIQMNTHLKTVKMSVRGRPAVTLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPD+LPL+ LL+DDAP+ KGKR
Sbjct: 66 RYWILPDALPLDMLLVDDAPKPKGKR 91
>gi|168068658|ref|XP_001786159.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662031|gb|EDQ49029.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 111
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLK+VK+T+KGK P +LD +S+RGNNI
Sbjct: 2 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKSVKLTLKGKVPVSLDHLSIRGNNI 61
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL L+TLL+DD PR K K+
Sbjct: 62 RYYILPDSLNLDTLLVDDTPRVKAKK 87
>gi|294463522|gb|ADE77290.1| unknown [Picea sitchensis]
Length = 114
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKIPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL++D PR K K+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRIKPKK 91
>gi|342319983|gb|EGU11928.1| RING finger domain-containing protein [Rhodotorula glutinis ATCC
204091]
Length = 885
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 71/108 (65%), Positives = 82/108 (75%), Gaps = 9/108 (8%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNGT VHGTI GVD +MNTHLK VKMTV+G+EP LDS+++RGNN+
Sbjct: 130 FLMKLNNETVTIELKNGTSVHGTITGVDPSMNTHLKKVKMTVRGREPQALDSLAIRGNNV 189
Query: 63 RYYILPDSLPLETLLIDDAP---------RSKGKRDSRRGGGAGGARG 101
RY+ILPDSLPL+TLLIDDAP RS RRGG RG
Sbjct: 190 RYFILPDSLPLDTLLIDDAPKPKKKKGEVRSARLAPLRRGGPGSPQRG 237
>gi|225436986|ref|XP_002277211.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 1
[Vitis vinifera]
gi|225436988|ref|XP_002277231.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Vitis vinifera]
Length = 114
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL+++ PR K K+
Sbjct: 66 RYYILPDSLNLETLLVEETPRVKPKK 91
>gi|15235510|ref|NP_192193.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
gi|4263519|gb|AAD15345.1| small nuclear riboprotein Sm-D1 [Arabidopsis thaliana]
gi|7269769|emb|CAB77769.1| small nuclear riboprotein Sm-D1-like protein [Arabidopsis
thaliana]
gi|21536940|gb|AAM61281.1| small nuclear riboprotein Sm-D1-like protein [Arabidopsis
thaliana]
gi|26450421|dbj|BAC42325.1| putative small nuclear riboprotein Sm-D1 [Arabidopsis thaliana]
gi|114050553|gb|ABI49426.1| At4g02840 [Arabidopsis thaliana]
gi|332656836|gb|AEE82236.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
Length = 116
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVDV+MNTHLK VK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL++D PR K K+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRIKPKK 91
>gi|303277487|ref|XP_003058037.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460694|gb|EEH57988.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 116
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 73/85 (85%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FL KLSHET TIELKNGT VHGTI GVD++MNTHLK VKMT+KGK P ++D +S+RGNNI
Sbjct: 6 FLQKLSHETCTIELKNGTVVHGTIMGVDISMNTHLKNVKMTLKGKNPVSMDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSL L+TLL+DD P+ K K
Sbjct: 66 RYYILPDSLNLDTLLVDDTPKIKSK 90
>gi|297848542|ref|XP_002892152.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337994|gb|EFH68411.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 117
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVDV+MNTHLK VK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL++D PR K K+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRIKPKK 91
>gi|255559488|ref|XP_002520764.1| small nuclear ribonucleoprotein sm d1, putative [Ricinus
communis]
gi|223540149|gb|EEF41726.1| small nuclear ribonucleoprotein sm d1, putative [Ricinus
communis]
Length = 114
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 78/88 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDS 90
RYYILPDSL LETLL+++ PR K K+ +
Sbjct: 66 RYYILPDSLNLETLLVEETPRVKPKKPT 93
>gi|388509846|gb|AFK42989.1| unknown [Lotus japonicus]
Length = 116
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 78/88 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDS 90
RYYILPDSL LETLL+++ PR K K+ +
Sbjct: 66 RYYILPDSLNLETLLVEETPRVKPKKPT 93
>gi|297814015|ref|XP_002874891.1| hypothetical protein ARALYDRAFT_490274 [Arabidopsis lyrata subsp.
lyrata]
gi|297320728|gb|EFH51150.1| hypothetical protein ARALYDRAFT_490274 [Arabidopsis lyrata subsp.
lyrata]
Length = 116
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVDV+MNTHLK VK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL++D PR K K+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRIKPKK 91
>gi|299742717|ref|XP_001832694.2| small nuclear riboprotein Sm-D [Coprinopsis cinerea okayama7#130]
gi|298405314|gb|EAU89114.2| small nuclear riboprotein Sm-D [Coprinopsis cinerea okayama7#130]
Length = 136
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 78/86 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNG VHGTI GVD+ MNT LKTVKMT++ +EPT+LD++S+RGNNI
Sbjct: 22 FLMKLNNETVTIELKNGAVVHGTITGVDMQMNTFLKTVKMTMRNREPTSLDTLSIRGNNI 81
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPD+LPL+TLL+DDAP+ K ++
Sbjct: 82 RYFILPDALPLDTLLVDDAPKPKHRK 107
>gi|341892180|gb|EGT48115.1| hypothetical protein CAEBREN_25098 [Caenorhabditis brenneri]
gi|341901485|gb|EGT57420.1| CBN-SNR-3 protein [Caenorhabditis brenneri]
Length = 126
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 70/83 (84%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETV IELKNGTQV GTI GVDVAMNTHL+ V MTVK KEP LD++S+RGNNI
Sbjct: 6 FLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSK 85
RY ILPD L L+TLLIDD PR K
Sbjct: 66 RYIILPDPLALDTLLIDDEPRKK 88
>gi|308502654|ref|XP_003113511.1| CRE-SNR-3 protein [Caenorhabditis remanei]
gi|308263470|gb|EFP07423.1| CRE-SNR-3 protein [Caenorhabditis remanei]
Length = 127
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 70/83 (84%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETV IELKNGTQV GTI GVDVAMNTHL+ V MTVK KEP LD++S+RGNNI
Sbjct: 6 FLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSK 85
RY ILPD L L+TLLIDD PR K
Sbjct: 66 RYIILPDPLALDTLLIDDEPRKK 88
>gi|17536583|ref|NP_495306.1| Protein SNR-3 [Caenorhabditis elegans]
gi|2833218|sp|Q10013.1|SMD1_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein Sm D1;
Short=Sm-D1; AltName: Full=snRNP core protein D1
gi|351064345|emb|CCD72707.1| Protein SNR-3 [Caenorhabditis elegans]
Length = 126
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 70/83 (84%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETV IELKNGTQV GTI GVDVAMNTHL+ V MTVK KEP LD++S+RGNNI
Sbjct: 6 FLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSK 85
RY ILPD L L+TLLIDD PR K
Sbjct: 66 RYIILPDPLALDTLLIDDEPRKK 88
>gi|388516873|gb|AFK46498.1| unknown [Lotus japonicus]
Length = 115
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLK VK+T+KGK P TLD +S+RG NI
Sbjct: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNPVTLDHLSVRGTNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL+++APR K K+
Sbjct: 66 RYYILPDSLNLETLLVEEAPRVKSKK 91
>gi|363814443|ref|NP_001242856.1| uncharacterized protein LOC100778485 [Glycine max]
gi|255640505|gb|ACU20538.1| unknown [Glycine max]
Length = 114
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNG VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGAVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL+++AP+ K K+
Sbjct: 66 RYYILPDSLNLETLLVEEAPKIKPKK 91
>gi|326430943|gb|EGD76513.1| small nuclear ribonucleoprotein Sm D1 [Salpingoeca sp. ATCC 50818]
Length = 161
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLS+ETVT+ELKNGT VHGT+ GVDVAMN H+KTVKM++KG+E T LD++++RGN I
Sbjct: 50 FLMKLSNETVTVELKNGTVVHGTVAGVDVAMNMHMKTVKMSIKGREATALDTLTVRGNTI 109
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
R+ ILPDSLPL+TLLIDD P+ K K+
Sbjct: 110 RHVILPDSLPLDTLLIDDTPKIKAKK 135
>gi|291243481|ref|XP_002741624.1| PREDICTED: small nuclear ribonucleoprotein D1 polypeptide
16kDa-like isoform 1 [Saccoglossus kowalevskii]
Length = 118
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 72/80 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGT V GTI GVDV+MNTHLK VKMTV+ K+P +D++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTLVRGTITGVDVSMNTHLKAVKMTVRNKDPVQIDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RY+ILPDSLPL+TLL+DD P
Sbjct: 66 RYFILPDSLPLDTLLVDDTP 85
>gi|388854881|emb|CCF51562.1| probable small nuclear ribonucleoprotein SNRPD1 [Ustilago hordei]
Length = 134
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++E+VTIELKNGT VHGT+ GVD+ MNTHLKTVKMT++G+ LD++S+RGNNI
Sbjct: 6 FLMKLNNESVTIELKNGTVVHGTVTGVDIQMNTHLKTVKMTLRGRPAVALDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPD+LPL+ LL+DDAP+ KGKR
Sbjct: 66 RYWILPDALPLDMLLVDDAPKPKGKR 91
>gi|168034120|ref|XP_001769561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679103|gb|EDQ65554.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTH+K+VK+T+KGK P LD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHMKSVKLTLKGKVPVALDHLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL L+TLL+DD PR K K+
Sbjct: 66 RYYILPDSLNLDTLLVDDTPRVKSKK 91
>gi|168013855|ref|XP_001759481.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689411|gb|EDQ75783.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLK+VK+T+KGK P LD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKSVKLTLKGKVPVALDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL L+TLL+DD PR K K+
Sbjct: 66 RYYILPDSLNLDTLLVDDTPRVKVKK 91
>gi|225462054|ref|XP_002275736.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Vitis
vinifera]
Length = 114
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P T+D +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDS+ LETLL+++ PR K K+
Sbjct: 66 RYYILPDSINLETLLVEETPRVKPKK 91
>gi|356499683|ref|XP_003518666.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 1
[Glycine max]
Length = 116
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL+++ P+ K K+
Sbjct: 66 RYYILPDSLNLETLLVEETPKIKPKK 91
>gi|359806624|ref|NP_001241019.1| uncharacterized protein LOC100819089 [Glycine max]
gi|255647733|gb|ACU24327.1| unknown [Glycine max]
Length = 115
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL+++ P+ K K+
Sbjct: 66 RYYILPDSLNLETLLVEETPKIKPKK 91
>gi|255637946|gb|ACU19289.1| unknown [Glycine max]
Length = 116
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYY+LPDSL LETLL+++ P+ K K+
Sbjct: 66 RYYVLPDSLNLETLLVEETPKIKPKK 91
>gi|395329081|gb|EJF61470.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 112
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 77/84 (91%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
MKL++ETVT+ELKNG+ +HGTI GVD+ MNTHLKTVKMT + +EPT+LDS+S+RGNNIRY
Sbjct: 1 MKLNNETVTVELKNGSVIHGTITGVDMQMNTHLKTVKMTARNREPTSLDSLSIRGNNIRY 60
Query: 65 YILPDSLPLETLLIDDAPRSKGKR 88
++LPD+LPL+TLL+DDAP+ K ++
Sbjct: 61 FVLPDALPLDTLLVDDAPKPKNRK 84
>gi|19115525|ref|NP_594613.1| Sm snRNP core protein Smd1 [Schizosaccharomyces pombe 972h-]
gi|12230564|sp|O42661.1|SMD1_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|2664241|emb|CAA15826.1| Sm snRNP core protein Smd1 [Schizosaccharomyces pombe]
Length = 117
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI VD+ MNTHLK VKMTVKG+EP ++++S+RGNNI
Sbjct: 6 FLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSLPL+TLLIDD+ + K K+
Sbjct: 66 RYYILPDSLPLDTLLIDDSTKPKQKK 91
>gi|302770463|ref|XP_002968650.1| hypothetical protein SELMODRAFT_145785 [Selaginella
moellendorffii]
gi|302816441|ref|XP_002989899.1| hypothetical protein SELMODRAFT_235902 [Selaginella
moellendorffii]
gi|300142210|gb|EFJ08912.1| hypothetical protein SELMODRAFT_235902 [Selaginella
moellendorffii]
gi|300163155|gb|EFJ29766.1| hypothetical protein SELMODRAFT_145785 [Selaginella
moellendorffii]
Length = 114
Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 75/86 (87%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT V+GTI GVD++MNTHLK VK+ +KGK P T+D +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTIVNGTITGVDISMNTHLKAVKLVLKGKNPVTMDHLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL+DD PR K K+
Sbjct: 66 RYYILPDSLNLETLLVDDTPRVKQKK 91
>gi|449464778|ref|XP_004150106.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis
sativus]
gi|449476727|ref|XP_004154817.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis
sativus]
Length = 114
Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLK VK+T+KGK P T+D +S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSL LETLL+++ PR K K+
Sbjct: 66 RYYILPDSLNLETLLVEETPRVKPKK 91
>gi|268531626|ref|XP_002630940.1| C. briggsae CBR-SNR-3 protein [Caenorhabditis briggsae]
Length = 127
Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 70/83 (84%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETV IELKNGTQV GTI GVDVAMNTHL+ V MTVK K+P LD++S+RGNNI
Sbjct: 6 FLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKDPVKLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSK 85
RY ILPD L L+TLLIDD PR K
Sbjct: 66 RYIILPDPLALDTLLIDDEPRKK 88
>gi|388854491|emb|CCF51878.1| probable small nuclear ribonucleoprotein SNRPD1 [Ustilago hordei]
Length = 134
Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++E+VTIELKNGT VHG++ GVD+ MNTHLKTVKMT++G+ LD++S+RGNNI
Sbjct: 6 FLMKLNNESVTIELKNGTVVHGSVTGVDIQMNTHLKTVKMTLRGRPAVALDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPD+LPL+ LL+DDAP+ KGKR
Sbjct: 66 RYWILPDALPLDMLLVDDAPKPKGKR 91
>gi|328862810|gb|EGG11910.1| hypothetical protein MELLADRAFT_32687 [Melampsora larici-populina
98AG31]
Length = 113
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 74/83 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
F ++L+ ETVT+ELKNGT +HGTI GVDVAMNTHLK VKMTV+ +EP LDS+S+RG+NI
Sbjct: 3 FSIRLNQETVTVELKNGTVIHGTISGVDVAMNTHLKAVKMTVRNREPQQLDSLSIRGSNI 62
Query: 63 RYYILPDSLPLETLLIDDAPRSK 85
RY+ILPDSLPL+TLLIDDAP+ K
Sbjct: 63 RYFILPDSLPLDTLLIDDAPKPK 85
>gi|392589390|gb|EIW78721.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 125
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 78/86 (90%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNG+ V+GTI GVD+ MNTHLKTVKMT + ++PT+LDS+S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGSVVNGTITGVDMQMNTHLKTVKMTARNRDPTSLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY +LPD+LPL+TLL+DDAP+ K ++
Sbjct: 66 RYIVLPDALPLDTLLVDDAPKPKARK 91
>gi|298709372|emb|CBJ31306.1| Small nuclear ribonucleoprotein-associated protein D1 [Ectocarpus
siliculosus]
Length = 107
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/101 (66%), Positives = 79/101 (78%), Gaps = 6/101 (5%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK+++ETVT+ELKNGT VHGT+ VDV+MNTHLK VK+T KGK PTT DS+S+RGNNI
Sbjct: 6 FLMKMNNETVTVELKNGTTVHGTVASVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
R YILPD+L L+ LLIDDAP+ K G GARGRG
Sbjct: 66 RCYILPDNLNLDQLLIDDAPKQKP------GKVKDGARGRG 100
>gi|414586803|tpg|DAA37374.1| TPA: hypothetical protein ZEAMMB73_218857 [Zea mays]
Length = 108
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/84 (75%), Positives = 75/84 (89%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
MKL++ETVTIELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNIRY
Sbjct: 1 MKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
Query: 65 YILPDSLPLETLLIDDAPRSKGKR 88
YILPDSL LETLL+++ PR K K+
Sbjct: 61 YILPDSLNLETLLVEETPRVKPKK 84
>gi|413918616|gb|AFW58548.1| hypothetical protein ZEAMMB73_336389 [Zea mays]
Length = 109
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/84 (75%), Positives = 75/84 (89%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
MKL++ETVTIELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TLD +S+RGNNIRY
Sbjct: 1 MKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
Query: 65 YILPDSLPLETLLIDDAPRSKGKR 88
YILPDSL LETLL+++ PR K K+
Sbjct: 61 YILPDSLNLETLLVEETPRVKPKK 84
>gi|66816135|ref|XP_642077.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|60470206|gb|EAL68186.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 131
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/94 (64%), Positives = 78/94 (82%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL +ETVTIELKNGT V G++ GVDV+MNTHLKTVK+T+KGK P LD++S+RGNNI
Sbjct: 6 FLMKLHNETVTIELKNGTIVQGSVAGVDVSMNTHLKTVKLTLKGKNPVNLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGA 96
RY+ILP+SL L TLL+DD P+ K K+ + + G +
Sbjct: 66 RYFILPESLNLGTLLVDDTPKVKAKKTTSKPGES 99
>gi|328770984|gb|EGF81025.1| hypothetical protein BATDEDRAFT_11263 [Batrachochytrium
dendrobatidis JAM81]
Length = 124
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 79/97 (81%), Gaps = 3/97 (3%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK +ETVTIELKNGT ++GTI GVD+ MNTHLKTVKMTVK K+P L+++S+RGN I
Sbjct: 9 FLMKCWNETVTIELKNGTTINGTITGVDMQMNTHLKTVKMTVKNKDPVHLETLSIRGNTI 68
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGA 99
RY+ILPD+LPL+TLLIDD P+ K S++ G + GA
Sbjct: 69 RYFILPDALPLDTLLIDDRPKLKA---SKKVGDSKGA 102
>gi|255075581|ref|XP_002501465.1| predicted protein [Micromonas sp. RCC299]
gi|226516729|gb|ACO62723.1| predicted protein [Micromonas sp. RCC299]
Length = 117
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 71/81 (87%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FL KLSHE+VTIELKNGT + GTI GVDV+MNTHLK VKMT+KGK P ++D +S+RGNNI
Sbjct: 6 FLQKLSHESVTIELKNGTVIAGTIMGVDVSMNTHLKNVKMTLKGKNPVSMDHLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPR 83
RYYILPDSL L+TLL+DD P+
Sbjct: 66 RYYILPDSLNLDTLLVDDTPK 86
>gi|393234430|gb|EJD41993.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 123
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV IELKNG+ V+GTI GVDV MNTHLKTVK++ + ++P +LD++S+RGNNI
Sbjct: 6 FLMKLNNETVQIELKNGSVVNGTITGVDVQMNTHLKTVKLSTRNRDPVSLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY++LPD+LPL+TLL+DDAP+ K R
Sbjct: 66 RYFVLPDALPLDTLLVDDAPKPKSTR 91
>gi|213401339|ref|XP_002171442.1| small nuclear ribonucleoprotein Sm D1 [Schizosaccharomyces
japonicus yFS275]
gi|211999489|gb|EEB05149.1| small nuclear ribonucleoprotein Sm D1 [Schizosaccharomyces
japonicus yFS275]
Length = 114
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ET++IELKNGT V+GTI VD+ MNTHLK VKMTVK +EP L+++S+RG+N+
Sbjct: 6 FLMKLTNETISIELKNGTIVNGTITSVDMQMNTHLKAVKMTVKDREPVPLETLSIRGSNV 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLLIDD+P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLIDDSPKPKQKK 91
>gi|390599258|gb|EIN08655.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 144
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 74/79 (93%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++E+VTIELKNG+ VHGTI GVD+ MNTHLKTVKM+++ +EP +LD++S+RGNNI
Sbjct: 30 FLMKLNNESVTIELKNGSVVHGTITGVDMQMNTHLKTVKMSMRNREPVSLDTLSIRGNNI 89
Query: 63 RYYILPDSLPLETLLIDDA 81
RY++LPD+LPL+TLL+DDA
Sbjct: 90 RYFVLPDALPLDTLLVDDA 108
>gi|296089996|emb|CBI39815.3| unnamed protein product [Vitis vinifera]
Length = 107
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 75/84 (89%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
MKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P T+D +S+RGNNIRY
Sbjct: 1 MKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSVRGNNIRY 60
Query: 65 YILPDSLPLETLLIDDAPRSKGKR 88
YILPDS+ LETLL+++ PR K K+
Sbjct: 61 YILPDSINLETLLVEETPRVKPKK 84
>gi|334186331|ref|NP_001190664.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
gi|332656837|gb|AEE82237.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
Length = 126
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 77/96 (80%), Gaps = 10/96 (10%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTI----------QGVDVAMNTHLKTVKMTVKGKEPTTL 52
FLMKL++ETV+IELKNGT VHGTI +GVDV+MNTHLK VK+T+KGK P TL
Sbjct: 6 FLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGKNPVTL 65
Query: 53 DSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKR 88
D +S+RGNNIRYYILPDSL LETLL++D PR K K+
Sbjct: 66 DHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKK 101
>gi|358054612|dbj|GAA99538.1| hypothetical protein E5Q_06239 [Mixia osmundae IAM 14324]
Length = 160
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/78 (78%), Positives = 69/78 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT V GTI GVDVAMN HLK VKMTVK EP +LD++S+RGNNI
Sbjct: 6 FLMKLNNETVSIELKNGTSVGGTITGVDVAMNMHLKAVKMTVKNNEPQSLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDD 80
RY ILPDSLPL+TLLIDD
Sbjct: 66 RYVILPDSLPLDTLLIDD 83
>gi|118394903|ref|XP_001029810.1| Sm protein [Tetrahymena thermophila]
gi|89284080|gb|EAR82147.1| Sm protein [Tetrahymena thermophila SB210]
Length = 111
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 77/96 (80%), Gaps = 4/96 (4%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL +TVTIELKNGTQ+ G+I VD+ MNTHL VKMT+KGK P +LD +++RGNNI
Sbjct: 6 FLMKLKGQTVTIELKNGTQIIGSIIAVDIRMNTHLSKVKMTIKGKNPVSLDHLTIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP----RSKGKRDSRRGG 94
RY+ LPD+LPL+TLL+DD P R + ++D+R+GG
Sbjct: 66 RYFQLPDALPLDTLLVDDQPKIQKRQQNQKDARKGG 101
>gi|237839011|ref|XP_002368803.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii ME49]
gi|211966467|gb|EEB01663.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii ME49]
gi|221481300|gb|EEE19694.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii GT1]
gi|221502024|gb|EEE27770.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii VEG]
Length = 121
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 86/115 (74%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLM+L++ET+ IELKNGT +HGT+ GVD++MNTHLK VKMT+K PT+L+ +++RGNNI
Sbjct: 6 FLMRLANETLVIELKNGTVIHGTVVGVDISMNTHLKNVKMTMKQGNPTSLEHLTIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGR 117
RY+ILPDSLPL+TLLIDD P + R++ R RGRG G RGG GR
Sbjct: 66 RYFILPDSLPLDTLLIDDTPLQRPAREAGRPIQRLRGRGRGRGGSAFRPRGGLGR 120
>gi|331241854|ref|XP_003333574.1| small nuclear ribonucleoprotein D1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312564|gb|EFP89155.1| small nuclear ribonucleoprotein D1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 122
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/76 (78%), Positives = 68/76 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL+ ETVTIELKNGT VHGTI GVDVAMNTHLK VKMTV+ +EP LDS+S+RG+N+
Sbjct: 6 FLMKLNQETVTIELKNGTVVHGTISGVDVAMNTHLKAVKMTVRNREPVQLDSLSIRGSNV 65
Query: 63 RYYILPDSLPLETLLI 78
RY ILPDSLPL+TLLI
Sbjct: 66 RYIILPDSLPLDTLLI 81
>gi|356499685|ref|XP_003518667.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Glycine max]
Length = 126
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/96 (65%), Positives = 77/96 (80%), Gaps = 10/96 (10%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTI----------QGVDVAMNTHLKTVKMTVKGKEPTTL 52
FLMKL++ETV+IELKNGT VHGTI GVD++MNTHLKTVK+T+KGK P TL
Sbjct: 6 FLMKLNNETVSIELKNGTIVHGTITDKLTQWALDDGVDISMNTHLKTVKLTLKGKNPVTL 65
Query: 53 DSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKR 88
D +S+RGNNIRYYILPDSL LETLL+++ P+ K K+
Sbjct: 66 DHLSVRGNNIRYYILPDSLNLETLLVEETPKIKPKK 101
>gi|226468934|emb|CAX76495.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 101
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 77/89 (86%), Gaps = 2/89 (2%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHG+I GVDV+MNTH+++V +T+K ++ LD++++RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP--RSKGKRD 89
RY+ILP+SLPL+TLLID+ P R G+ D
Sbjct: 66 RYFILPESLPLDTLLIDEGPPKRKPGRED 94
>gi|348673532|gb|EGZ13351.1| hypothetical protein PHYSODRAFT_302978 [Phytophthora sojae]
Length = 434
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 68/116 (58%), Positives = 75/116 (64%), Gaps = 30/116 (25%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQG------------------------------VD 30
+ FLMKLS+ETVTIELKNGT VHGTI G VD
Sbjct: 4 VRFLMKLSNETVTIELKNGTIVHGTITGATALYRCFRSALASVWTDLNVVPVYLLPTGVD 63
Query: 31 VAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKG 86
++MNTHLK VKMTVKGK P LDS+S+RGNNIRYYILPDSL L+TLLIDD PR K
Sbjct: 64 ISMNTHLKAVKMTVKGKNPVNLDSLSIRGNNIRYYILPDSLNLDTLLIDDTPREKA 119
>gi|422295210|gb|EKU22509.1| small nuclear ribonucleoprotein D1, partial [Nannochloropsis
gaditana CCMP526]
Length = 108
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 74/85 (87%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNGT + GTI GVDV+MNT+LK VK+T+KGK P + +S+S+RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPD+L L+ LL+DD P++K K
Sbjct: 66 RYYILPDALNLDALLVDDGPKNKLK 90
>gi|342874370|gb|EGU76384.1| hypothetical protein FOXB_13062 [Fusarium oxysporum Fo5176]
Length = 123
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 73/85 (85%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT VHGTI V MNT L+TVKMT+KG+EP +L+++++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIVHGTISSVSPQMNTALRTVKMTIKGQEPISLETMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|401400718|ref|XP_003880841.1| sm protein, related [Neospora caninum Liverpool]
gi|325115253|emb|CBZ50808.1| sm protein, related [Neospora caninum Liverpool]
Length = 121
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/88 (63%), Positives = 75/88 (85%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLM+L++ET+ IELKNGT +HGT+ GVD++MNTHLK VKMT+K PT+L+ +++RGNNI
Sbjct: 6 FLMRLANETLVIELKNGTVIHGTVVGVDISMNTHLKNVKMTLKHGNPTSLEHLTIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDS 90
RY+ILPDSLPL+TLLIDD P + R++
Sbjct: 66 RYFILPDSLPLDTLLIDDTPLQRPAREA 93
>gi|358339785|dbj|GAA47780.1| small nuclear ribonucleoprotein D1 [Clonorchis sinensis]
Length = 124
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/80 (71%), Positives = 73/80 (91%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVT+ELKNGTQVHG+I GVDV+MNTHL++V +T+K +E LD++++RGNNI
Sbjct: 6 FLMKLSHETVTMELKNGTQVHGSIAGVDVSMNTHLRSVTVTLKNRESMNLDTLTVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RY+ILP+SLPL+TLLID+ P
Sbjct: 66 RYFILPESLPLDTLLIDEGP 85
>gi|440640424|gb|ELR10343.1| hypothetical protein GMDG_04725 [Geomyces destructans 20631-21]
Length = 139
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT +G++P LD+I+LRG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTARGRDPVALDTINLRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYYILPDSLPLDTLLIDDAPKPKNK 90
>gi|56757319|gb|AAW26831.1| SJCHGC01415 protein [Schistosoma japonicum]
gi|226468936|emb|CAX76496.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 127
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 73/80 (91%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHG+I GVDV+MNTH+++V +T+K ++ LD++++RGNNI
Sbjct: 8 FLMKLSHETVTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTVRGNNI 67
Query: 63 RYYILPDSLPLETLLIDDAP 82
RY+ILP+SLPL+TLLID+ P
Sbjct: 68 RYFILPESLPLDTLLIDEGP 87
>gi|226468938|emb|CAX76497.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226468940|emb|CAX76498.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226468942|emb|CAX76499.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226468944|emb|CAX76500.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226472890|emb|CAX71131.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226472892|emb|CAX71132.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 125
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 73/80 (91%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHG+I GVDV+MNTH+++V +T+K ++ LD++++RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAP 82
RY+ILP+SLPL+TLLID+ P
Sbjct: 66 RYFILPESLPLDTLLIDEGP 85
>gi|361128927|gb|EHL00852.1| putative Small nuclear ribonucleoprotein Sm D1 [Glarea lozoyensis
74030]
Length = 132
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 76/97 (78%), Gaps = 2/97 (2%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT +G++P LD+I+LRG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTQRGRDPIALDTINLRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGA 99
RYYILPDSLPL+TLLIDDAP+ K K +R+ GA
Sbjct: 66 RYYILPDSLPLDTLLIDDAPKPKNK--ARKEAADRGA 100
>gi|401884158|gb|EJT48330.1| hypothetical protein A1Q1_02613 [Trichosporon asahii var. asahii
CBS 2479]
Length = 264
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 77/91 (84%), Gaps = 4/91 (4%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTT----LDSISLR 58
FLMKL++ETVTIELKNG+ +HGTI VD MNTHLK+VKM+++ P T LDSI++R
Sbjct: 148 FLMKLNNETVTIELKNGSVIHGTITSVDPQMNTHLKSVKMSLRNAAPNTPSTHLDSIAIR 207
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRD 89
GNNIRY+ILPDSLPL+TLL+DD+P+++ +++
Sbjct: 208 GNNIRYFILPDSLPLDTLLVDDSPKARKRKE 238
>gi|328873443|gb|EGG21810.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 185
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 70/78 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL +ETVTIELKNGT +HGTI GVDV+MNTHLKTVK+T+KGK P LD++S+RGNNI
Sbjct: 39 FLMKLHNETVTIELKNGTIIHGTIVGVDVSMNTHLKTVKLTLKGKNPINLDTLSIRGNNI 98
Query: 63 RYYILPDSLPLETLLIDD 80
RYYILP+SL L TLL+DD
Sbjct: 99 RYYILPESLNLGTLLVDD 116
>gi|320592072|gb|EFX04511.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 348
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/95 (63%), Positives = 74/95 (77%), Gaps = 2/95 (2%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT VHGTI V MNT L+ VKMT KG++P LD+I+LRG+ I
Sbjct: 222 FLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPKGQDPVPLDTINLRGSTI 281
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK--RDSRRGGG 95
RY+ILPDSLPL+TLL+DDAP+ K K ++S R
Sbjct: 282 RYFILPDSLPLDTLLVDDAPKPKNKARKESDRAAA 316
>gi|357017089|gb|AET50573.1| hypothetical protein [Eimeria tenella]
Length = 125
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 74/88 (84%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLM+L++ET+ +ELKNGT VHGTI GVDVAMNTHLK VK+TVK P ++D +++RG+NI
Sbjct: 6 FLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGSNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDS 90
RY+ILPDSLPL+TLLIDD P + R++
Sbjct: 66 RYFILPDSLPLDTLLIDDTPIQRPPRET 93
>gi|392577177|gb|EIW70307.1| hypothetical protein TREMEDRAFT_29897 [Tremella mesenterica DSM
1558]
Length = 126
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 76/89 (85%), Gaps = 4/89 (4%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK----GKEPTTLDSISLRGN 60
MKL++ETVT+ELKNGT +HGTI VD AM THLK+VKMT++ G P +LDSI++RGN
Sbjct: 1 MKLNNETVTMELKNGTVIHGTITSVDPAMTTHLKSVKMTLRSSPPGTPPISLDSIAIRGN 60
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRD 89
NIRYY+LPDSLPL+TLL+DDAPR+K +++
Sbjct: 61 NIRYYVLPDSLPLDTLLVDDAPRAKKRKE 89
>gi|403412301|emb|CCL99001.1| predicted protein [Fibroporia radiculosa]
Length = 743
Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats.
Identities = 63/104 (60%), Positives = 78/104 (75%), Gaps = 8/104 (7%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ FLMKL++ETVTIELKNG+ VHGTI GVD+ MNTHLKTVKMT + +EPT+LDS+S+RGN
Sbjct: 4 VRFLMKLNNETVTIELKNGSVVHGTITGVDMQMNTHLKTVKMTARNREPTSLDSLSIRGN 63
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
NIRY++LPD+LPL+TL K R+ G G A GG
Sbjct: 64 NIRYFVLPDALPLDTL--------KMMREVEAAAGVGIAGEAGG 99
>gi|406867718|gb|EKD20756.1| small nuclear ribonucleoprotein Sm D1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 128
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 72/85 (84%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT +G++P +LD+I+LRG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTQRGRDPISLDTINLRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYYILPDSLPLDTLLIDDAPKPKNK 90
>gi|242216937|ref|XP_002474272.1| predicted protein [Postia placenta Mad-698-R]
gi|220726564|gb|EED80509.1| predicted protein [Postia placenta Mad-698-R]
Length = 121
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 75/86 (87%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNG+ VHGTI GVD+ MNTHLKTVK+T + +EP +++++RGN I
Sbjct: 6 FLMKLNNETVTIELKNGSVVHGTITGVDMQMNTHLKTVKLTARNREPMAHETLTIRGNTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY++LPD++PL+TLL+DDAP+ K ++
Sbjct: 66 RYFVLPDAIPLDTLLVDDAPKPKNRK 91
>gi|281212453|gb|EFA86613.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 140
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 69/78 (88%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
M FLMKL +ETVTIELKNGT +HGTI GVDV+MNTHLKTVK+T+KGK P LDS+S+RGN
Sbjct: 1 MKFLMKLHNETVTIELKNGTIIHGTISGVDVSMNTHLKTVKLTLKGKNPINLDSLSIRGN 60
Query: 61 NIRYYILPDSLPLETLLI 78
NIRY+ILP+SL L TLL+
Sbjct: 61 NIRYFILPESLNLGTLLV 78
>gi|295673314|ref|XP_002797203.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|225681042|gb|EEH19326.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides
brasiliensis Pb03]
gi|226282575|gb|EEH38141.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226292265|gb|EEH47685.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides
brasiliensis Pb18]
Length = 121
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 72/85 (84%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT KG++P +LD+I++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTILHGTITSVSPQMNTALRTVKMTTKGRDPISLDTINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLL+DDAP+ K K
Sbjct: 66 RYYILPDSLPLDTLLVDDAPKPKNK 90
>gi|145345472|ref|XP_001417233.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577460|gb|ABO95526.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 114
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 70/81 (86%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FL KLS+E+VTIELKNGT HGTI GVDV+MNTHLK VK+T+KGK PT ++ +S+RGN I
Sbjct: 6 FLQKLSNESVTIELKNGTTAHGTIMGVDVSMNTHLKQVKLTLKGKNPTAVEHLSVRGNTI 65
Query: 63 RYYILPDSLPLETLLIDDAPR 83
RYYILPDSL L+TLL+DD P+
Sbjct: 66 RYYILPDSLNLDTLLVDDTPK 86
>gi|339250642|ref|XP_003374306.1| putative LSM domain protein [Trichinella spiralis]
gi|316969410|gb|EFV53511.1| putative LSM domain protein [Trichinella spiralis]
Length = 120
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGT +HGTI GVDVAMNTHL+ VKMT+K + LD +S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTILHGTISGVDVAMNTHLRAVKMTLKDGQTVQLDVLSVRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILP+++PL+ L+DD P+ K K
Sbjct: 66 RYFILPETIPLDQYLVDDLPKPKRK 90
>gi|330796086|ref|XP_003286100.1| hypothetical protein DICPUDRAFT_77015 [Dictyostelium purpureum]
gi|325083919|gb|EGC37359.1| hypothetical protein DICPUDRAFT_77015 [Dictyostelium purpureum]
Length = 126
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/79 (75%), Positives = 69/79 (87%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL +ETVTIELKNGT V GTI GVDV+MNTHLKTVK+T+KGK P LD++S+RGNNI
Sbjct: 6 FLMKLHNETVTIELKNGTIVQGTIAGVDVSMNTHLKTVKLTLKGKNPVNLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDA 81
RYYILP+SL L TLL+DD
Sbjct: 66 RYYILPESLNLGTLLVDDT 84
>gi|46105460|ref|XP_380534.1| hypothetical protein FG00358.1 [Gibberella zeae PH-1]
gi|408400659|gb|EKJ79736.1| hypothetical protein FPSE_00016 [Fusarium pseudograminearum
CS3096]
Length = 126
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 72/85 (84%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+ VKMT+KG+EP +L+++++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|407917344|gb|EKG10658.1| hypothetical protein MPH_12237 [Macrophomina phaseolina MS6]
Length = 122
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 70/85 (82%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK +ETVTIELKNGT V+GTI V MNT L+TVKMT K +E TLD+I++RG+NI
Sbjct: 6 FLMKCQNETVTIELKNGTVVNGTIASVSPTMNTALRTVKMTPKNRETMTLDTINIRGSNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYYILPDSLPLDTLLIDDAPKPKNK 90
>gi|353238410|emb|CCA70357.1| probable small nuclear ribonucleoprotein SNRPD1 [Piriformospora
indica DSM 11827]
Length = 123
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/78 (71%), Positives = 71/78 (91%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNG+ VHGTI GVD+ MNTHLKTV++T + ++P LDS+S+RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVRLTARNRDPQPLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDD 80
RY+ILPD+LPL+TLL+DD
Sbjct: 66 RYFILPDALPLDTLLVDD 83
>gi|307111075|gb|EFN59310.1| hypothetical protein CHLNCDRAFT_29459 [Chlorella variabilis]
Length = 115
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 74/90 (82%), Gaps = 1/90 (1%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++E V IELKNGT V+GTI GVDVAMNTHLKTVK+ KG+ P T+ +S+RGNNI
Sbjct: 7 FLMKLANEKVQIELKNGTVVYGTITGVDVAMNTHLKTVKLVPKGQNPITVAQMSIRGNNI 66
Query: 63 RYYILPDSLPLETLLID-DAPRSKGKRDSR 91
RYYILPDSL L+TLL+D D P+++ KR R
Sbjct: 67 RYYILPDSLNLDTLLVDLDQPKTRPKRPER 96
>gi|294950553|ref|XP_002786687.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
gi|239900979|gb|EER18483.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
Length = 114
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 73/87 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FL KL+ ETVT+ELKNGT VHGT+ GVDV+MNTH+K VK+TV+G+ P +D +++RG+ I
Sbjct: 6 FLQKLNSETVTVELKNGTVVHGTVTGVDVSMNTHMKNVKVTVRGRNPVGMDHLTIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRD 89
RY+ILPD +PL+TLLIDD P++K RD
Sbjct: 66 RYFILPDHIPLDTLLIDDGPKNKAARD 92
>gi|154281585|ref|XP_001541605.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411784|gb|EDN07172.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|225563163|gb|EEH11442.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces capsulatus
G186AR]
Length = 123
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT KG++P +LD+I++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTAKGRDPISLDTINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLL+DD P+ K K
Sbjct: 66 RYYILPDSLPLDTLLVDDTPKPKNK 90
>gi|315050300|ref|XP_003174524.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma gypseum CBS
118893]
gi|327303162|ref|XP_003236273.1| small nuclear ribonucleoprotein Sm D1 [Trichophyton rubrum CBS
118892]
gi|311339839|gb|EFQ99041.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma gypseum CBS
118893]
gi|326461615|gb|EGD87068.1| small nuclear ribonucleoprotein Sm D1 [Trichophyton rubrum CBS
118892]
gi|326471350|gb|EGD95359.1| small nuclear ribonucleoprotein Sm D1 [Trichophyton tonsurans CBS
112818]
Length = 125
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT KG++P +LDSI++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTPKGRDPISLDSINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLL+DD P+ K K
Sbjct: 66 RYYILPDSLPLDTLLVDDQPKPKNK 90
>gi|296813285|ref|XP_002846980.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma otae CBS
113480]
gi|238842236|gb|EEQ31898.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma otae CBS
113480]
Length = 125
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT KG++P +LDSI++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTPKGRDPISLDSINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLL+DD P+ K K
Sbjct: 66 RYYILPDSLPLDTLLVDDQPKPKNK 90
>gi|384484598|gb|EIE76778.1| small nuclear ribonucleoprotein Sm D1 [Rhizopus delemar RA
99-880]
Length = 115
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 70/76 (92%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV++E+KNGT VHGTI GVD++MNTHLKTVKMT+K ++P +LDS+S+RGNNI
Sbjct: 6 FLMKLNNETVSVEMKNGTVVHGTITGVDMSMNTHLKTVKMTIKNRDPVSLDSLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLI 78
R ILPDSLPL+TLLI
Sbjct: 66 RCVILPDSLPLDTLLI 81
>gi|159486837|ref|XP_001701443.1| small nuclear ribonucleoprotein Sm D1 [Chlamydomonas reinhardtii]
gi|158271625|gb|EDO97440.1| small nuclear ribonucleoprotein Sm D1 [Chlamydomonas reinhardtii]
Length = 114
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 74/90 (82%), Gaps = 1/90 (1%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV IELKNGT + GTI GVD+AMNTHLK VK+T +GK P ++D +S+RGNNI
Sbjct: 2 FLMKLANETVQIELKNGTVIQGTIAGVDIAMNTHLKAVKLTARGKNPVSMDHLSVRGNNI 61
Query: 63 RYYILPDSLPLETLLID-DAPRSKGKRDSR 91
RYYILPDSL L+TLL+D D P+ + + +R
Sbjct: 62 RYYILPDSLNLDTLLVDIDKPKQRPTKPTR 91
>gi|119193324|ref|XP_001247268.1| hypothetical protein CIMG_01039 [Coccidioides immitis RS]
gi|258574579|ref|XP_002541471.1| hypothetical protein UREG_00987 [Uncinocarpus reesii 1704]
gi|303312169|ref|XP_003066096.1| small nuclear ribonucleoprotein Sm D1, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|237901737|gb|EEP76138.1| hypothetical protein UREG_00987 [Uncinocarpus reesii 1704]
gi|240105758|gb|EER23951.1| small nuclear ribonucleoprotein Sm D1, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320040082|gb|EFW22016.1| small nuclear ribonucleoprotein SmD1 [Coccidioides posadasii str.
Silveira]
gi|392863489|gb|EAS35757.2| small nuclear ribonucleoprotein Sm D1 [Coccidioides immitis RS]
Length = 120
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT KG+EP +LD+I++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTPKGREPISLDTINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLLIDD P+ K K
Sbjct: 66 RYFILPDSLPLDTLLIDDTPKPKNK 90
>gi|157093137|gb|ABV22223.1| small nuclear ribonucleoprotein Sm D1 [Karlodinium micrum]
Length = 112
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 69/81 (85%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLS+E+V +ELKN T V GTI GVDV+MNTH+K VK TVKGK P ++D +++RGNN+
Sbjct: 6 FLMKLSNESVVVELKNSTVVAGTITGVDVSMNTHMKNVKFTVKGKPPVSMDHLTIRGNNV 65
Query: 63 RYYILPDSLPLETLLIDDAPR 83
RY ILPDS+PL+TLL+DDA R
Sbjct: 66 RYVILPDSIPLDTLLVDDAKR 86
>gi|145243932|ref|XP_001394478.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus niger CBS
513.88]
gi|134079163|emb|CAK40691.1| unnamed protein product [Aspergillus niger]
gi|350631277|gb|EHA19648.1| hypothetical protein ASPNIDRAFT_47972 [Aspergillus niger ATCC
1015]
gi|358367165|dbj|GAA83784.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus kawachii IFO
4308]
Length = 121
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT KG++P +LD+I++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLLIDD P+ K K
Sbjct: 66 RYYILPDSLPLDTLLIDDTPKPKNK 90
>gi|67523297|ref|XP_659709.1| hypothetical protein AN2105.2 [Aspergillus nidulans FGSC A4]
gi|40745781|gb|EAA64937.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
gi|259487477|tpe|CBF86187.1| TPA: small nuclear ribonucleoprotein SmD1, putative
(AFU_orthologue; AFUA_2G05110) [Aspergillus nidulans
FGSC A4]
Length = 121
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT KG++P +LD+I++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLLIDD P+ K K
Sbjct: 66 RYYILPDSLPLDTLLIDDTPKPKNK 90
>gi|322693984|gb|EFY85827.1| small nuclear ribonucleoprotein Sm D1 [Metarhizium acridum CQMa
102]
gi|322708999|gb|EFZ00576.1| small nuclear ribonucleoprotein Sm D1 [Metarhizium anisopliae
ARSEF 23]
Length = 121
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 72/85 (84%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT VHGTI V MNT L+TVKMT +G++P +LD++++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIVHGTISSVSPQMNTALRTVKMTPRGQDPISLDTMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|428180768|gb|EKX49634.1| hypothetical protein GUITHDRAFT_151418 [Guillardia theta
CCMP2712]
Length = 117
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 73/83 (87%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNG+ VHGTI G+D+AMNTHLK VK+T++ K P L+ +S+RG+NI
Sbjct: 6 FLMKLNNETVTIELKNGSVVHGTIVGIDMAMNTHLKAVKLTMRNKTPVPLEQLSIRGSNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSK 85
RYY+LPD+L L+TLL++DAP+ K
Sbjct: 66 RYYLLPDNLNLDTLLVEDAPKHK 88
>gi|146322817|ref|XP_749642.2| small nuclear ribonucleoprotein SmD1 [Aspergillus fumigatus
Af293]
gi|129556817|gb|EAL87604.2| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
fumigatus Af293]
gi|159129049|gb|EDP54163.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
fumigatus A1163]
Length = 120
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT KG++P +LD+I++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTILHGTITAVSPQMNTSLRTVKMTPKGRDPISLDTINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLL+DD P+ K K
Sbjct: 66 RYYILPDSLPLDTLLVDDQPKPKNK 90
>gi|119480211|ref|XP_001260134.1| small nuclear ribonucleoprotein SmD1, putative [Neosartorya
fischeri NRRL 181]
gi|119408288|gb|EAW18237.1| small nuclear ribonucleoprotein SmD1, putative [Neosartorya
fischeri NRRL 181]
Length = 121
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT KG++P +LD+I++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTILHGTITAVSPQMNTSLRTVKMTPKGRDPISLDTINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLL+DD P+ K K
Sbjct: 66 RYYILPDSLPLDTLLVDDQPKPKNK 90
>gi|169770091|ref|XP_001819515.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus oryzae RIB40]
gi|238487546|ref|XP_002375011.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
flavus NRRL3357]
gi|83767374|dbj|BAE57513.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699890|gb|EED56229.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
flavus NRRL3357]
gi|391864024|gb|EIT73322.1| small nuclear ribonucleoprotein [Aspergillus oryzae 3.042]
Length = 123
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT KG++P +LD+I++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLL+DD P+ K K
Sbjct: 66 RYYILPDSLPLDTLLVDDQPKPKNK 90
>gi|261195138|ref|XP_002623973.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
SLH14081]
gi|239587845|gb|EEQ70488.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
SLH14081]
gi|239610667|gb|EEQ87654.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
ER-3]
Length = 123
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT KG++P +LD+I++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTILHGTITSVSPQMNTALRTVKMTPKGRDPISLDTINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLL+DD P+ K K
Sbjct: 66 RYYILPDSLPLDTLLVDDTPKPKNK 90
>gi|115399152|ref|XP_001215165.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus terreus
NIH2624]
gi|114192048|gb|EAU33748.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus terreus
NIH2624]
Length = 121
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT KG++P +LD+I++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTILHGTITSVSPQMNTALRTVKMTPKGRDPISLDTINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLL+DD P+ K K
Sbjct: 66 RYYILPDSLPLDTLLVDDQPKPKNK 90
>gi|317135015|gb|ADV03070.1| SmD1 protein [Amphidinium carterae]
Length = 111
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 72/88 (81%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLS+E+V +ELKN T V GTI GVDV+MNTH+K +K TVKGK P +D +++RGNNI
Sbjct: 6 FLMKLSNESVVVELKNSTVVSGTITGVDVSMNTHMKNIKFTVKGKPPIAMDHLTIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDS 90
RY +LPDS+PL+TLLI+D+ R+ +D+
Sbjct: 66 RYVVLPDSIPLDTLLIEDSKRAPKTKDA 93
>gi|294944597|ref|XP_002784335.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
gi|239897369|gb|EER16131.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
Length = 114
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FL KL+ ETVT+ELKNGT VHGT+ GVDV+MNTH+K VK+TV+G+ P +D +++RG+ I
Sbjct: 6 FLQKLNSETVTVELKNGTVVHGTVTGVDVSMNTHMKNVKVTVRGRNPVGMDHLTIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRD 89
RY+ILPD +PL+TLLIDD P++K R+
Sbjct: 66 RYFILPDHIPLDTLLIDDGPKNKAARE 92
>gi|340504873|gb|EGR31279.1| small nuclear ribonucleoprotein sm d1, putative [Ichthyophthirius
multifiliis]
Length = 110
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 77/90 (85%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL ++TVTIELKNGTQ+ G+I GVD+ MNTHL VK+T+KGK P +LD +++RGNNI
Sbjct: 6 FLMKLKNQTVTIELKNGTQITGSIIGVDIRMNTHLSKVKLTIKGKNPVSLDHLTIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRR 92
RY++LP++LP++TLL+D+ P+ + ++ +++
Sbjct: 66 RYFLLPEALPIDTLLVDEPPKVQKRQQNQK 95
>gi|255932631|ref|XP_002557872.1| Pc12g10510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582491|emb|CAP80678.1| Pc12g10510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 123
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVT+ELKNGT +HGTI V MNT L+ VKMT KG++P +LD+I++RG+ I
Sbjct: 6 FLMKCANETVTVELKNGTILHGTIVSVSPQMNTSLRAVKMTPKGRDPVSLDTINVRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLL+DDAP+ K K
Sbjct: 66 RYYILPDSLPLDTLLVDDAPKPKNK 90
>gi|112253614|gb|ABI14393.1| small nuclear riboprotein Sm-D1 [Karlodinium micrum]
Length = 112
Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 69/81 (85%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLS+E+V +ELKN T V GTI GVDV+MNTH+K VK TVKG+ P ++D +++RGNN+
Sbjct: 6 FLMKLSNESVVVELKNSTVVAGTITGVDVSMNTHMKNVKFTVKGEPPVSMDHLTIRGNNV 65
Query: 63 RYYILPDSLPLETLLIDDAPR 83
RY ILPDS+PL+TLL+DDA R
Sbjct: 66 RYVILPDSIPLDTLLVDDAKR 86
>gi|56758868|gb|AAW27574.1| unknown [Schistosoma japonicum]
gi|226468946|emb|CAX76501.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226472888|emb|CAX71130.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 118
Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 76/88 (86%), Gaps = 1/88 (1%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
MKLSHETVTIELKNGTQVHG+I GVDV+MNTH+++V +T+K ++ LD++++RGNNIRY
Sbjct: 1 MKLSHETVTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTVRGNNIRY 60
Query: 65 YILPDSLPLETLLIDD-APRSKGKRDSR 91
+ILP+SLPL+TLLID+ P+ K R+ R
Sbjct: 61 FILPESLPLDTLLIDEGPPKRKPGREER 88
>gi|300176808|emb|CBK25377.2| unnamed protein product [Blastocystis hominis]
Length = 100
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 71/84 (84%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
MKLS+ETVTIELKNGT + GTI GVDVAMNTHLK VKMT+KG+ P +LDS+S+RG+NIRY
Sbjct: 1 MKLSNETVTIELKNGTIIVGTITGVDVAMNTHLKAVKMTIKGRNPVSLDSMSVRGSNIRY 60
Query: 65 YILPDSLPLETLLIDDAPRSKGKR 88
ILPDS+ L+ L+DD+P++ R
Sbjct: 61 VILPDSINLDAYLVDDSPKNNPAR 84
>gi|345564647|gb|EGX47607.1| hypothetical protein AOL_s00083g115 [Arthrobotrys oligospora ATCC
24927]
Length = 132
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 72/85 (84%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVT+ELKNGT +HGTI V MNT L+TV+MTV+ +EP TLD+I++RG+ I
Sbjct: 6 FLMKCANETVTVELKNGTIIHGTITTVTPTMNTSLRTVRMTVRNREPQTLDTINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLLIDD+ ++K K
Sbjct: 66 RYFILPDSLPLDTLLIDDSVKAKNK 90
>gi|412985751|emb|CCO16951.1| predicted protein [Bathycoccus prasinos]
Length = 158
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 70/84 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FL KL++ETVTIELKNGT GTI GVD++MNTHLK+VK+TVKG+ P TLD +S+RGN I
Sbjct: 42 FLQKLNNETVTIELKNGTTCSGTILGVDISMNTHLKSVKLTVKGRNPQTLDHLSIRGNTI 101
Query: 63 RYYILPDSLPLETLLIDDAPRSKG 86
RYYILP+SL L+ LL++D P +K
Sbjct: 102 RYYILPESLNLDALLVEDMPTNKS 125
>gi|405118247|gb|AFR93021.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii
H99]
Length = 129
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 71/83 (85%), Gaps = 4/83 (4%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKE----PTTLDSISLR 58
FLMKL++ETVTIELKNGT +HGTI VD MNTHLK+VK+T++ + P +LDSI++R
Sbjct: 6 FLMKLNNETVTIELKNGTVIHGTITSVDPQMNTHLKSVKLTLRSQPSSQPPLSLDSIAIR 65
Query: 59 GNNIRYYILPDSLPLETLLIDDA 81
GNNIRY+ILPDSLPL+TLL+DDA
Sbjct: 66 GNNIRYFILPDSLPLDTLLVDDA 88
>gi|380495060|emb|CCF32683.1| small nuclear ribonucleoprotein Sm D1 [Colletotrichum
higginsianum]
Length = 124
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT VHGTI V MNT L+TVKMT KG++ +LD++++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDAVSLDTMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|310793785|gb|EFQ29246.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 124
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT VHGTI V MNT L+TVKMT KG++ +LD++++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDAVSLDTMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|429859869|gb|ELA34627.1| small nuclear ribonucleoprotein sm d1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 177
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT VHGTI V MNT L+TVKMT KG++ +LD++++RG+ I
Sbjct: 61 FLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDAVSLDTMNIRGSTI 120
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLLIDDAP+ K K
Sbjct: 121 RYFILPDSLPLDTLLIDDAPKPKNK 145
>gi|47028291|gb|AAT09078.1| small nuclear ribonucleoprotein Sm-D1 [Bigelowiella natans]
Length = 120
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 70/81 (86%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLM+L++ETVT+ELKNGT V GTI GVD++MNTHLK VKMT+KGK P LD++S+RGNNI
Sbjct: 6 FLMRLNNETVTVELKNGTVVQGTISGVDMSMNTHLKIVKMTLKGKNPVHLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPR 83
RY+ILPDSL L+ LL+++ +
Sbjct: 66 RYFILPDSLNLDALLVEEVKK 86
>gi|302923356|ref|XP_003053658.1| hypothetical protein NECHADRAFT_75034 [Nectria haematococca mpVI
77-13-4]
gi|256734599|gb|EEU47945.1| hypothetical protein NECHADRAFT_75034 [Nectria haematococca mpVI
77-13-4]
Length = 114
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 70/83 (84%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
MK ++ETVTIELKNGT VHGTI V MNT L+ VKMT+KG++P +LD++++RG+ IRY
Sbjct: 1 MKCANETVTIELKNGTIVHGTISSVSPQMNTALRNVKMTIKGQDPVSLDTMNIRGSTIRY 60
Query: 65 YILPDSLPLETLLIDDAPRSKGK 87
+ILPDSLPL+TLLIDDAP+ K K
Sbjct: 61 FILPDSLPLDTLLIDDAPKPKNK 83
>gi|302411190|ref|XP_003003428.1| small nuclear ribonucleoprotein Sm D1 [Verticillium albo-atrum
VaMs.102]
gi|261357333|gb|EEY19761.1| small nuclear ribonucleoprotein Sm D1 [Verticillium albo-atrum
VaMs.102]
Length = 121
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 70/85 (82%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT V+GTI V MNT L+ VKMT KG++P LD++++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIVNGTISSVSPQMNTALRIVKMTTKGQDPVALDTMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLL+DDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLVDDAPKPKNK 90
>gi|212528972|ref|XP_002144643.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
marneffei ATCC 18224]
gi|210074041|gb|EEA28128.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
marneffei ATCC 18224]
Length = 126
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 70/85 (82%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT + GTI V MNT L+TVKMT KG+EP +LD+I++RG+ I
Sbjct: 6 FLMKCTNETVTIELKNGTILSGTIASVSPQMNTALRTVKMTPKGREPISLDTINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLL+DD P+ + K
Sbjct: 66 RYYILPDSLPLDTLLVDDQPKPRNK 90
>gi|346978140|gb|EGY21592.1| small nuclear ribonucleoprotein Sm D1 [Verticillium dahliae
VdLs.17]
Length = 121
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 70/85 (82%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT V+GTI V MNT L+ VKMT KG++P LD++++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIVNGTISSVSPQMNTALRIVKMTTKGQDPIALDTMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLL+DDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLVDDAPKPKNK 90
>gi|121710142|ref|XP_001272687.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
clavatus NRRL 1]
gi|119400837|gb|EAW11261.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
clavatus NRRL 1]
Length = 123
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 71/85 (83%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT KG++P +LD+I++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTILHGTIISVSPQMNTALRTVKMTPKGRDPISLDTINVRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLL+DD P+ K K
Sbjct: 66 RYFILPDSLPLDTLLVDDQPKPKNK 90
>gi|402087104|gb|EJT82002.1| small nuclear ribonucleoprotein Sm D1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 123
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 70/85 (82%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT VHGTI V MNT L+ VKMT +G++P LD++++RG+ I
Sbjct: 6 FLMKCTNETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLDAMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLL+DDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLVDDAPKPKNK 90
>gi|323455004|gb|EGB10873.1| hypothetical protein AURANDRAFT_22657 [Aureococcus anophagefferens]
Length = 114
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 72/99 (72%), Gaps = 7/99 (7%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNGT V GTI GVD++MNT LK +T KGK D++S+RG+N+
Sbjct: 6 FLMKLNNETVTIELKNGTVVQGTISGVDISMNTFLKNASLTPKGKNGVKYDTLSVRGSNV 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARG 101
RYYILPDSL L+TLLIDD P+ K K AG AR
Sbjct: 66 RYYILPDSLNLDTLLIDDTPKQKVK-------AAGAARS 97
>gi|116192449|ref|XP_001222037.1| hypothetical protein CHGG_05942 [Chaetomium globosum CBS 148.51]
gi|88181855|gb|EAQ89323.1| hypothetical protein CHGG_05942 [Chaetomium globosum CBS 148.51]
Length = 125
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 70/85 (82%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT VHGTI V MNT L+ VKMT +G+EP L+++++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQEPIHLETLNVRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|242764900|ref|XP_002340864.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
stipitatus ATCC 10500]
gi|218724060|gb|EED23477.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
stipitatus ATCC 10500]
Length = 124
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 69/85 (81%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK +ETVTIELKNGT + GTI V MNT L+TVKMT KG+EP +LD+I++RG+ I
Sbjct: 6 FLMKCMNETVTIELKNGTILSGTIASVSPQMNTALRTVKMTPKGREPISLDTINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLL+DD P+ + K
Sbjct: 66 RYYILPDSLPLDTLLVDDQPKPRNK 90
>gi|384496149|gb|EIE86640.1| small nuclear ribonucleoprotein Sm D1 [Rhizopus delemar RA
99-880]
Length = 108
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 68/74 (91%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
MKL++ETV++E+KNGT VHGTI GVD++MNTHLKTVKMT+K ++P +LDS+S+RGNNIR
Sbjct: 1 MKLNNETVSVEMKNGTVVHGTITGVDMSMNTHLKTVKMTIKNRDPVSLDSLSIRGNNIRC 60
Query: 65 YILPDSLPLETLLI 78
ILPDSLPL+TLLI
Sbjct: 61 VILPDSLPLDTLLI 74
>gi|154297620|ref|XP_001549236.1| hypothetical protein BC1G_12655 [Botryotinia fuckeliana B05.10]
gi|347842491|emb|CCD57063.1| hypothetical protein [Botryotinia fuckeliana]
Length = 137
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 67/85 (78%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT K TLD I+LRG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTPKNGTSLTLDVINLRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYYILPDSLPLDTLLIDDAPKPKNK 90
>gi|358391553|gb|EHK40957.1| hypothetical protein TRIATDRAFT_301687 [Trichoderma atroviride
IMI 206040]
Length = 120
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 69/85 (81%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK S+ETVT+ELKNGT VHGTI V MN L+TVKMT +G++ LD++++RG+ I
Sbjct: 6 FLMKCSNETVTVELKNGTIVHGTISSVSPQMNVALRTVKMTARGQDSLALDTMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|156030963|ref|XP_001584807.1| hypothetical protein SS1G_14262 [Sclerotinia sclerotiorum 1980]
gi|154700653|gb|EDO00392.1| hypothetical protein SS1G_14262 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 136
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 68/85 (80%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT +HGTI V MNT L+TVKMT K +LD+I+LRG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTPKNGASLSLDTINLRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYYILPDSLPLDTLLIDDAPKPKNK 90
>gi|443922492|gb|ELU41935.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 122
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 68/77 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVT+ELKNG+ VHGT+ GVDV MNTHLK VK+T + +EPT LD++S+RGNNI
Sbjct: 6 FLMKLNNETVTVELKNGSVVHGTLTGVDVQMNTHLKNVKLTSRNREPTALDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLID 79
RY++LPD+L L+ LL+D
Sbjct: 66 RYFVLPDALNLDALLVD 82
>gi|389632099|ref|XP_003713702.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae 70-15]
gi|351646035|gb|EHA53895.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae 70-15]
gi|440473990|gb|ELQ42759.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae Y34]
gi|440485032|gb|ELQ65031.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae P131]
Length = 125
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 69/85 (81%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT VHGTI V MNT L+ VKMT +G++P LD++++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLDAMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLL+DD P+ K K
Sbjct: 66 RYYILPDSLPLDTLLVDDTPKPKNK 90
>gi|358378050|gb|EHK15733.1| hypothetical protein TRIVIDRAFT_64379 [Trichoderma virens Gv29-8]
Length = 120
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 69/85 (81%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT VHGTI V MN L+TVKMT +G++ LD++++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIVHGTISSVTPQMNVALRTVKMTARGQDSIALDTMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|346324354|gb|EGX93951.1| small nuclear ribonucleoprotein Sm D1 [Cordyceps militaris CM01]
Length = 119
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 70/85 (82%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK +E VTIELKNGT V+GTI V MNT L+TVKMT +G+EP +LD++++RG+ I
Sbjct: 6 FLMKCVNEPVTIELKNGTIVNGTISSVTPQMNTALRTVKMTPRGQEPISLDTMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLL+DDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLVDDAPKPKNK 90
>gi|367020776|ref|XP_003659673.1| hypothetical protein MYCTH_2296998 [Myceliophthora thermophila
ATCC 42464]
gi|347006940|gb|AEO54428.1| hypothetical protein MYCTH_2296998 [Myceliophthora thermophila
ATCC 42464]
Length = 118
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 70/85 (82%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT VHGTI V MNT L+ VKMT +G++P L+++++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLETLNVRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|70949535|ref|XP_744168.1| small nuclear ribonucleoprotein D1 [Plasmodium chabaudi chabaudi]
gi|56524010|emb|CAH81021.1| small nuclear ribonucleoprotein D1, putative [Plasmodium chabaudi
chabaudi]
Length = 123
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 72/102 (70%), Gaps = 10/102 (9%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKG----------KEPTTL 52
FLMKL++E VTIELKNGT + G I GVD+ MNTH+K VK+ +K K+ +L
Sbjct: 6 FLMKLTNENVTIELKNGTLISGVITGVDIKMNTHMKNVKVVIKNKNVGEYNANTKQFLSL 65
Query: 53 DSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGG 94
D +++RGNNIRYYIL DSLPL+TLL+DD P++K +D G
Sbjct: 66 DHVTIRGNNIRYYILSDSLPLDTLLVDDTPKNKASKDKSFGS 107
>gi|66357964|ref|XP_626160.1| small nuclear ribonucleoprotein D1. SM domain containing protein
[Cryptosporidium parvum Iowa II]
gi|46227255|gb|EAK88205.1| small nuclear ribonucleoprotein D1. SM domain containing protein
[Cryptosporidium parvum Iowa II]
Length = 137
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 76/117 (64%), Gaps = 1/117 (0%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL + +V IELKNGT + GTI VD++MNT+LK VKM+VK + P +L I++RGN I
Sbjct: 17 FLMKLVNNSVVIELKNGTIIQGTIVTVDMSMNTYLKNVKMSVKHRNPVSLSQITVRGNTI 76
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
RY+ILPDSLPL+ LLIDD P+ R + G G + G GG + RG
Sbjct: 77 RYFILPDSLPLDALLIDDTPKQNPPRVNPISGPKFGNKSTTNLSG-GGNFDNKSRGS 132
>gi|425777993|gb|EKV16140.1| Small nuclear ribonucleoprotein SmD1, putative [Penicillium
digitatum Pd1]
gi|425780629|gb|EKV18635.1| Small nuclear ribonucleoprotein SmD1, putative [Penicillium
digitatum PHI26]
Length = 125
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 70/85 (82%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVT+ELKNGT +HGTI V MNT L+ VKMT KG++ +LD+I++RG+ I
Sbjct: 6 FLMKCANETVTVELKNGTILHGTIVSVSPQMNTSLRAVKMTPKGRDTISLDTINIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLL+DDAP+ K K
Sbjct: 66 RYYILPDSLPLDTLLVDDAPKPKNK 90
>gi|67615310|ref|XP_667428.1| small nuclear ribonucleoprotein smd1 [Cryptosporidium hominis
TU502]
gi|54658569|gb|EAL37203.1| small nuclear ribonucleoprotein smd1 [Cryptosporidium hominis]
Length = 126
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL + +V IELKNGT + GTI VD++MNT+LK VKM+VK + P +L I++RGN I
Sbjct: 6 FLMKLINNSVVIELKNGTIIQGTIVSVDMSMNTYLKNVKMSVKHRNPVSLSQITVRGNTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
RY+ILPDSLPL+ LLIDD P+ R + G G + G GG + R
Sbjct: 66 RYFILPDSLPLDALLIDDTPKQNPPRVNPISGPKFGNKSTTNLSG-GGNYDNKSRAS 121
>gi|367042806|ref|XP_003651783.1| hypothetical protein THITE_2112439 [Thielavia terrestris NRRL
8126]
gi|346999045|gb|AEO65447.1| hypothetical protein THITE_2112439 [Thielavia terrestris NRRL
8126]
Length = 121
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 70/85 (82%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT VHGTI V MNT L+ VKMT KG++ +L+++++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTVVHGTIASVSPQMNTALRNVKMTPKGQDAISLETLNVRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|341038646|gb|EGS23638.1| putative small nuclear ribonucleoprotein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 118
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 69/85 (81%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNG VHGTI V M+T L+ V+ T KG+EP +++S+++RGN I
Sbjct: 6 FLMKCANETVTIELKNGAIVHGTIASVTPKMDTALRNVRYTPKGEEPYSVESLTVRGNTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYYILPDSLPLDTLLIDDAPKPKNK 90
>gi|340513813|gb|EGR44094.1| predicted protein [Trichoderma reesei QM6a]
Length = 120
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 68/85 (80%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT HGTI V MN L+TVKMT +G++ LD++++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIAHGTISSVTPQMNVALRTVKMTARGQDSIALDTMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|400602721|gb|EJP70323.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 119
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 70/85 (82%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK +E VTIELKNGT V+GTI V MNT L+TVKMT +G++P +LD++++RG+ I
Sbjct: 6 FLMKCVNEPVTIELKNGTIVNGTISSVTPQMNTALRTVKMTPRGQDPISLDTMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLL+DDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLVDDAPKPKNK 90
>gi|320168484|gb|EFW45383.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 131
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 70/86 (81%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLM+L ETV +ELKNGT V GTI GVD MNT L+ VK+TVK K+P +L+++S+RGNNI
Sbjct: 6 FLMRLVSETVIVELKNGTVVQGTIVGVDHLMNTMLRNVKLTVKNKDPVSLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
R+YILPDSLPL++LLI++ P+ K+
Sbjct: 66 RHYILPDSLPLDSLLIEEVPKKSTKK 91
>gi|83315254|ref|XP_730713.1| small nuclear riboprotein Sm-D1 [Plasmodium yoelii yoelii 17XNL]
gi|23490523|gb|EAA22278.1| small nuclear riboprotein Sm-D1-like protein [Plasmodium yoelii
yoelii]
Length = 123
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 71/97 (73%), Gaps = 10/97 (10%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKG----------KEPTTL 52
FLMKL++E VTIELKNGT + G I GVD+ MNTH+K VK+ +K K+ +L
Sbjct: 6 FLMKLTNENVTIELKNGTLISGVITGVDIKMNTHMKNVKVVIKNKNVGEYNANTKQFLSL 65
Query: 53 DSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRD 89
D +++RGNNIRYYIL DSLPL+TLL+DD P++K +D
Sbjct: 66 DHVTIRGNNIRYYILSDSLPLDTLLVDDTPKNKTSKD 102
>gi|321252513|ref|XP_003192431.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|317458899|gb|ADV20644.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
Length = 121
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 69/81 (85%), Gaps = 4/81 (4%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKE----PTTLDSISLRGN 60
MKL++ETVTIELKNGT +HGTI VD MNTHLK+VK+T++ + P +LDSI++RGN
Sbjct: 1 MKLNNETVTIELKNGTVIHGTITSVDPQMNTHLKSVKLTLRSQPSSQPPLSLDSIAIRGN 60
Query: 61 NIRYYILPDSLPLETLLIDDA 81
NIRY+ILPDSLPL+TLL+DDA
Sbjct: 61 NIRYFILPDSLPLDTLLVDDA 81
>gi|58262702|ref|XP_568761.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|134108736|ref|XP_777021.1| hypothetical protein CNBB5470 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259704|gb|EAL22374.1| hypothetical protein CNBB5470 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223411|gb|AAW41454.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 121
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 69/81 (85%), Gaps = 4/81 (4%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKE----PTTLDSISLRGN 60
MKL++ETVTIELKNGT +HGTI VD MNTHLK+VK+T++ + P +LDSI++RGN
Sbjct: 1 MKLNNETVTIELKNGTVIHGTITSVDPQMNTHLKSVKLTLRSQPSSQPPLSLDSIAIRGN 60
Query: 61 NIRYYILPDSLPLETLLIDDA 81
NIRY+ILPDSLPL+TLL+DDA
Sbjct: 61 NIRYFILPDSLPLDTLLVDDA 81
>gi|68063885|ref|XP_673938.1| small nuclear ribonucleoprotein D1 [Plasmodium berghei strain ANKA]
gi|56492149|emb|CAH95780.1| small nuclear ribonucleoprotein D1, putative [Plasmodium berghei]
Length = 123
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 71/97 (73%), Gaps = 10/97 (10%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKG----------KEPTTL 52
FLMKL++E VTIELKNGT + G I GVD+ MNTH+K VK+ +K K+ +L
Sbjct: 6 FLMKLTNENVTIELKNGTLISGVITGVDIKMNTHMKNVKVVIKNKNVGEYNANTKQFLSL 65
Query: 53 DSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRD 89
D +++RGNNIRYYIL DSLPL+TLL+DD P++K ++
Sbjct: 66 DHVTIRGNNIRYYILSDSLPLDTLLVDDTPKNKSSKE 102
>gi|156098711|ref|XP_001615371.1| small nuclear ribonucleoprotein Sm D1 [Plasmodium vivax Sal-1]
gi|148804245|gb|EDL45644.1| small nuclear ribonucleoprotein Sm D1, putative [Plasmodium vivax]
Length = 127
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 70/97 (72%), Gaps = 10/97 (10%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKG----------KEPTTL 52
FLMKL++E VTIELKNGT V G I GVD+ MNTH+K VK+ +K K+ +L
Sbjct: 6 FLMKLTNENVTIELKNGTLVTGIITGVDIKMNTHMKNVKVVIKNKNVGEYNVNTKQFLSL 65
Query: 53 DSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRD 89
D +++RGNNIRY+IL DSLPL+TLL+DD P+ K +D
Sbjct: 66 DHVTIRGNNIRYFILSDSLPLDTLLVDDTPKQKMSKD 102
>gi|389583797|dbj|GAB66531.1| small nuclear ribonucleoprotein Sm D1, partial [Plasmodium
cynomolgi strain B]
Length = 127
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 70/97 (72%), Gaps = 10/97 (10%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKG----------KEPTTL 52
FLMKL++E VTIELKNGT V G I GVD+ MNTH+K VK+ +K K+ +L
Sbjct: 6 FLMKLTNENVTIELKNGTLVTGIITGVDIRMNTHMKNVKVVIKNKNVGEYNVNTKQFLSL 65
Query: 53 DSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRD 89
D I++RGNNIRY+IL DSLPL+TLL+DD P+ K +D
Sbjct: 66 DHITIRGNNIRYFILSDSLPLDTLLVDDTPKQKISKD 102
>gi|336274282|ref|XP_003351895.1| hypothetical protein SMAC_00442 [Sordaria macrospora k-hell]
gi|380096178|emb|CCC06225.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 123
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 74/95 (77%), Gaps = 2/95 (2%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT VHGTI V M+T L+ VKMT KG++ LD++++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIVHGTIASVTPRMDTALRNVKMTPKGQDAVALDAMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDA--PRSKGKRDSRRGGG 95
RY+ILPDSLPL+TLL+DD+ P++K ++++ R
Sbjct: 66 RYFILPDSLPLDTLLVDDSVKPKNKARKEADRSAA 100
>gi|50543206|ref|XP_499769.1| YALI0A04961p [Yarrowia lipolytica]
gi|49645634|emb|CAG83694.1| YALI0A04961p [Yarrowia lipolytica CLIB122]
Length = 138
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 69/86 (80%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL+ E+V IELKNGT + GT+ V MNT LK VKMT+K + PT+LD I++RGN I
Sbjct: 6 FLMKLTSESVQIELKNGTVLLGTVMSVSNNMNTTLKNVKMTMKNRPPTSLDYINIRGNTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
R++ILPDSLPL+TLLIDD P++K ++
Sbjct: 66 RFFILPDSLPLDTLLIDDTPKAKRRK 91
>gi|378731678|gb|EHY58137.1| small nuclear ribonucleoprotein D1 [Exophiala dermatitidis
NIH/UT8656]
Length = 130
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 72/102 (70%), Gaps = 8/102 (7%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGK-------EPTTLDSI 55
FLMK ++ETVTIELKNGT VHGTI V MNT L+ VKMT K + E +LD+I
Sbjct: 5 FLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRAVKMTTKNRSSPSAPGETISLDTI 64
Query: 56 SLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAG 97
++RG+ IRY+ILPDSLPL+TLLIDD P+ K K + G GA
Sbjct: 65 NIRGSTIRYFILPDSLPLDTLLIDDQPKPKNKA-RKEGDGAA 105
>gi|221056240|ref|XP_002259258.1| small nuclear ribonucleoprotein d1 [Plasmodium knowlesi strain H]
gi|193809329|emb|CAQ40031.1| small nuclear ribonucleoprotein d1, putative [Plasmodium knowlesi
strain H]
Length = 127
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 70/97 (72%), Gaps = 10/97 (10%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKG----------KEPTTL 52
FLMKL++E VTIELKNGT V G I GVD+ MNTH+K VK+ +K K+ +L
Sbjct: 6 FLMKLTNENVTIELKNGTLVTGIITGVDIRMNTHMKNVKVVIKNRNVGEYNVNTKQFLSL 65
Query: 53 DSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRD 89
D +++RGNNIRY+IL DSLPL+TLL+DD P+ K +D
Sbjct: 66 DHVTIRGNNIRYFILSDSLPLDTLLVDDTPKQKISKD 102
>gi|85112250|ref|XP_964309.1| small nuclear ribonucleoprotein Sm D1 [Neurospora crassa OR74A]
gi|28926086|gb|EAA35073.1| small nuclear ribonucleoprotein Sm D1 [Neurospora crassa OR74A]
Length = 123
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 74/94 (78%), Gaps = 2/94 (2%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELKNGT VHGTI V M+T L+ VKMT KG++ LD++++RG+ I
Sbjct: 6 FLMKCANETVTIELKNGTIVHGTIASVTPRMDTALRNVKMTPKGQDAVALDAMNIRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDA--PRSKGKRDSRRGG 94
RY+ILPDSLPL+TLL+DD+ P++K ++++ R
Sbjct: 66 RYFILPDSLPLDTLLVDDSVKPKNKARKEADRSA 99
>gi|452821316|gb|EME28348.1| small nuclear ribonucleoprotein D1 [Galdieria sulphuraria]
Length = 122
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 69/84 (82%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL+ ETVT+ELKNGT V GT+ GVD MNT LK VKMT +GK P TLD++SLRG+ I
Sbjct: 6 FLMKLNSETVTVELKNGTVVQGTVTGVDHNMNTTLKAVKMTPRGKNPVTLDAMSLRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKG 86
RY+ILP+SL +++LL+DD+ R +G
Sbjct: 66 RYFILPESLNVDSLLVDDSIRPRG 89
>gi|449304089|gb|EMD00097.1| hypothetical protein BAUCODRAFT_30555 [Baudoinia compniacensis
UAMH 10762]
Length = 130
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 65/85 (76%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELK G VHGTI V MNT+L+ KMT KG +LD IS+RG+ I
Sbjct: 6 FLMKCTNETVTIELKTGAIVHGTIASVSPQMNTNLRAAKMTPKGGSQISLDQISIRGSEI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY+ILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|384249908|gb|EIE23388.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 118
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 71/90 (78%), Gaps = 1/90 (1%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++E+V IELKNGT V GTI GVD+AMNTHLK VK+ +KG+ LDS+S+RGN I
Sbjct: 10 FLMKLTNESVQIELKNGTVVQGTITGVDIAMNTHLKNVKLILKGQPAQQLDSMSVRGNQI 69
Query: 63 RYYILPDSLPLETLLID-DAPRSKGKRDSR 91
R YILP++L L+TLL+D D P+ + KR R
Sbjct: 70 RMYILPETLNLDTLLVDLDQPKIRPKRPER 99
>gi|428673180|gb|EKX74093.1| small ribonucleoprotein D1, putative [Babesia equi]
Length = 119
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 68/83 (81%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++E+VT+ELKNGT + GTI G+D++MNTHLK VK+ K LD +++RGN+I
Sbjct: 6 FLMKLANESVTLELKNGTVMTGTIIGIDISMNTHLKNVKIVKKDNSVILLDHLTVRGNSI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSK 85
RYY+LPDS+PL+TLLIDD P+ K
Sbjct: 66 RYYLLPDSIPLDTLLIDDTPKQK 88
>gi|169617530|ref|XP_001802179.1| hypothetical protein SNOG_11947 [Phaeosphaeria nodorum SN15]
gi|111059239|gb|EAT80359.1| hypothetical protein SNOG_11947 [Phaeosphaeria nodorum SN15]
Length = 137
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 71/97 (73%), Gaps = 2/97 (2%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK +ETVT+ELKNG+ V+GTI V MN L+TVK T K ++ TLDS+++RG+ I
Sbjct: 6 FLMKCQNETVTVELKNGSIVNGTITSVSPLMNVALRTVKYTPKSRDTVTLDSMTVRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGA 99
RY ILPDSLPL+TLLIDDAP+ K K +R+ G A
Sbjct: 66 RYIILPDSLPLDTLLIDDAPKPKNK--ARKEADRGAA 100
>gi|452978143|gb|EME77907.1| hypothetical protein MYCFIDRAFT_57424 [Pseudocercospora fijiensis
CIRAD86]
Length = 129
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 65/85 (76%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELK GT V GTI V MNT+L+ KMT KG +LD IS+RG+ I
Sbjct: 6 FLMKCTNETVTIELKTGTIVQGTIASVSPQMNTNLRNAKMTPKGGSQISLDHISVRGSEI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYYILPDSLPLDTLLIDDAPKPKNK 90
>gi|452837979|gb|EME39920.1| hypothetical protein DOTSEDRAFT_74704 [Dothistroma septosporum
NZE10]
Length = 131
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 67/95 (70%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELK GT V GT+ V MNT+L+ KMT KG +LD IS+RG+ I
Sbjct: 6 FLMKCTNETVTIELKTGTIVQGTVASVSPQMNTNLRNAKMTPKGGSQISLDHISIRGSEI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAG 97
RYYILPDSLPL+TLLIDD P+ K K + AG
Sbjct: 66 RYYILPDSLPLDTLLIDDTPKPKNKARKEQDKSAG 100
>gi|156086674|ref|XP_001610746.1| small nuclear ribonucleoprotein Sm subunit [Babesia bovis T2Bo]
gi|154797999|gb|EDO07178.1| small nuclear ribonucleoprotein Sm subunit, putative [Babesia
bovis]
Length = 125
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 71/92 (77%), Gaps = 6/92 (6%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK----GKEP--TTLDSIS 56
FLMKL++E+VT+ELKNGT + GT+ GVD++MNTHLK VK+ K G EP LD ++
Sbjct: 6 FLMKLANESVTVELKNGTVLTGTVIGVDISMNTHLKNVKIVNKDSGSGSEPNYILLDHLT 65
Query: 57 LRGNNIRYYILPDSLPLETLLIDDAPRSKGKR 88
+RGNNIRY+IL DSLPL+TLLIDD P+ K R
Sbjct: 66 VRGNNIRYFILSDSLPLDTLLIDDTPKQKPSR 97
>gi|453080718|gb|EMF08768.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 132
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 64/85 (75%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK S+ETVTIELK GT V GTI V MNT+L+ KMT KG +LD +S+RG+ I
Sbjct: 6 FLMKCSNETVTIELKTGTIVQGTIASVSPQMNTNLRNAKMTPKGGSQISLDHVSIRGSEI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL+TLLIDD P+ K K
Sbjct: 66 RYYILPDSLPLDTLLIDDTPKPKNK 90
>gi|218195022|gb|EEC77449.1| hypothetical protein OsI_16257 [Oryza sativa Indica Group]
Length = 170
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKT-VKMTVKGKEPTTLDSISLRGNN 61
FLMKL++ETVTIELKNGT VHGTI G M+ ++ + + GK P TLD +S+RGNN
Sbjct: 6 FLMKLNNETVTIELKNGTVVHGTITGGQAVMSWNVSILIHQPLAGKNPVTLDHLSVRGNN 65
Query: 62 IRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
IRYYILPDSL LETLL++D PR K K+ + R RG
Sbjct: 66 IRYYILPDSLNLETLLVEDTPRVKAKKPTAGRAAWAVRRERGA 108
>gi|403375854|gb|EJY87900.1| hypothetical protein OXYTRI_22447 [Oxytricha trifallax]
Length = 128
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 74/85 (87%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETVTIELKNGT V GT+ GVDV+MNTHLK VK+TVKG+E LD +++RGNNI
Sbjct: 6 FLMKLNNETVTIELKNGTIVVGTVTGVDVSMNTHLKAVKLTVKGRETIALDHLTIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY++LP+SL LETLL+DDAP+ + +
Sbjct: 66 RYFLLPESLQLETLLVDDAPKLRAR 90
>gi|339250640|ref|XP_003374305.1| putative LSM domain protein [Trichinella spiralis]
gi|316969411|gb|EFV53512.1| putative LSM domain protein [Trichinella spiralis]
Length = 154
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 66/80 (82%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
++FLM LS ETVTIELKNGT +HGT+ GVD+AMNTHL+ VKMT+K E LD +S+RGN
Sbjct: 36 VHFLMNLSRETVTIELKNGTILHGTVTGVDIAMNTHLRAVKMTMKDGETVQLDVMSVRGN 95
Query: 61 NIRYYILPDSLPLETLLIDD 80
NIRY+ILPD++ L+ L+++
Sbjct: 96 NIRYFILPDTVSLDCCLMNN 115
>gi|209875591|ref|XP_002139238.1| small nuclear ribonucleoprotein Sm D1 [Cryptosporidium muris
RN66]
gi|209554844|gb|EEA04889.1| small nuclear ribonucleoprotein Sm D1, putative [Cryptosporidium
muris RN66]
Length = 114
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 64/79 (81%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL + +V IELKNGT V GTI VD+AMNT+LK VKM+VK + P +L +++RG+ I
Sbjct: 6 FLMKLVNNSVVIELKNGTIVQGTIVNVDMAMNTYLKNVKMSVKQRNPISLLQLTVRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDA 81
RY+ILPDSLPL+TLLIDD
Sbjct: 66 RYFILPDSLPLDTLLIDDT 84
>gi|124804217|ref|XP_001347937.1| small nuclear ribonucleoprotein D1, putative [Plasmodium falciparum
3D7]
gi|23496190|gb|AAN35850.1|AE014839_59 small nuclear ribonucleoprotein D1, putative [Plasmodium falciparum
3D7]
Length = 126
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 80/122 (65%), Gaps = 14/122 (11%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKG----------KEPT 50
++FLMKL++E VTIELKNGT + G I VD+ MNTH+K VK+ +K K+
Sbjct: 4 VHFLMKLTNENVTIELKNGTLITGIITAVDIKMNTHMKNVKVVIKNKNIAEYNVNTKQFL 63
Query: 51 TLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRDS----RRGGGAGGARGRGGRG 106
+L+ +++RGNNIRY+IL DSLPL++LL++D K +D R G + GA+GRG +
Sbjct: 64 SLEHVTIRGNNIRYFILSDSLPLDSLLVEDTTPKKISKDKSFLHRDKGMSKGAKGRGRKL 123
Query: 107 GR 108
+
Sbjct: 124 SK 125
>gi|312077152|ref|XP_003141177.1| hypothetical protein LOAG_05592 [Loa loa]
gi|307763656|gb|EFO22890.1| hypothetical protein LOAG_05592 [Loa loa]
Length = 147
Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 85/130 (65%), Gaps = 7/130 (5%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
M FLM+L + VTIELKNGT V G + GVD+AMN HL V MT+K ++P +LD++S+RGN
Sbjct: 13 MRFLMRLHDKFVTIELKNGTVVTGYVSGVDMAMNFHLNRVGMTLKNQKPVSLDAVSVRGN 72
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKG---KRDSRRGGGAGGARGRG-GRGGRG--GGRGG 114
NIRY I P++L L+ L+I D P+ K K S+ G + RG+G RGGRG G+ G
Sbjct: 73 NIRYIIFPNNLNLDALMI-DVPQQKARTRKTPSQPRGQSNAIRGQGVTRGGRGRNSGKFG 131
Query: 115 RGRGGPRGRG 124
R RG G
Sbjct: 132 PCRHFARGSG 141
>gi|396483691|ref|XP_003841766.1| hypothetical protein LEMA_P096960.1 [Leptosphaeria maculans JN3]
gi|312218341|emb|CBX98287.1| hypothetical protein LEMA_P096960.1 [Leptosphaeria maculans JN3]
Length = 222
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 64/85 (75%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK +ETVT+ELKNGT V+GTI V MN L+ VK T K ++ LDS+++RG+ I
Sbjct: 97 FLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDSMTVRGSTI 156
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY ILPDSLPL+TLLIDDAP+ K K
Sbjct: 157 RYVILPDSLPLDTLLIDDAPKPKNK 181
>gi|84998206|ref|XP_953824.1| small ribonucleoprotein D1 [Theileria annulata]
gi|65304821|emb|CAI73146.1| small ribonucleoprotein D1, putative [Theileria annulata]
Length = 125
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 68/89 (76%), Gaps = 6/89 (6%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKE------PTTLDSIS 56
FLMKL++E+VT+ELKNGT + GT+ G+D++MNTHLK VK+ KG + LD ++
Sbjct: 6 FLMKLANESVTVELKNGTVLTGTVIGIDISMNTHLKNVKVVNKGSDGKEGTNVVVLDHLT 65
Query: 57 LRGNNIRYYILPDSLPLETLLIDDAPRSK 85
+RGNNIRY+IL DS+PL+TLLIDD P K
Sbjct: 66 VRGNNIRYFILSDSIPLDTLLIDDTPVQK 94
>gi|149626991|ref|XP_001507555.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Ornithorhynchus anatinus]
Length = 125
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 69/92 (75%), Gaps = 6/92 (6%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPT------TLDSIS 56
FLMKL++E+VTIELKNGT + G + GVD++MNTHLK VK+ K K + LD ++
Sbjct: 6 FLMKLANESVTIELKNGTVLTGIVLGVDISMNTHLKNVKIVNKTKAASKGPNFILLDHLT 65
Query: 57 LRGNNIRYYILPDSLPLETLLIDDAPRSKGKR 88
+RGN+IRY+IL DSLPL+TLLIDD P+ K R
Sbjct: 66 IRGNSIRYFILSDSLPLDTLLIDDTPKQKPSR 97
>gi|330943683|ref|XP_003306243.1| hypothetical protein PTT_19359 [Pyrenophora teres f. teres 0-1]
gi|311316316|gb|EFQ85673.1| hypothetical protein PTT_19359 [Pyrenophora teres f. teres 0-1]
Length = 132
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 66/93 (70%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK +ETVT+ELKNGT V+GTI V MN L+ VK T K ++ LD++++RG+ I
Sbjct: 6 FLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTVRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGG 95
RY ILPDSLPL+TLLIDDAP+ K K GG
Sbjct: 66 RYIILPDSLPLDTLLIDDAPKPKNKARKEVGGA 98
>gi|189200737|ref|XP_001936705.1| small nuclear ribonucleoprotein Sm D1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187983804|gb|EDU49292.1| small nuclear ribonucleoprotein Sm D1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 132
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 66/93 (70%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK +ETVT+ELKNGT V+GTI V MN L+ VK T K ++ LD++++RG+ I
Sbjct: 6 FLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTVRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGG 95
RY ILPDSLPL+TLLIDDAP+ K K GG
Sbjct: 66 RYIILPDSLPLDTLLIDDAPKPKNKARKEVGGA 98
>gi|398389859|ref|XP_003848390.1| hypothetical protein MYCGRDRAFT_63742 [Zymoseptoria tritici IPO323]
gi|339468265|gb|EGP83366.1| hypothetical protein MYCGRDRAFT_63742 [Zymoseptoria tritici IPO323]
Length = 133
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 66/95 (69%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK ++ETVTIELK GT V GTI + MNT+L+ KMT +G L+ +S+RG+ I
Sbjct: 6 FLMKCTNETVTIELKTGTIVQGTIASISPQMNTNLRNAKMTPRGGSQIALEHVSIRGSEI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAG 97
RYYILPDSLPL+TLLIDD P+ K K + AG
Sbjct: 66 RYYILPDSLPLDTLLIDDTPKPKNKARKEQDKSAG 100
>gi|388583883|gb|EIM24184.1| Sm-like ribonucleo protein, partial [Wallemia sebi CBS 633.66]
Length = 115
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 65/83 (78%)
Query: 6 KLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYY 65
KL++E+VTIELKNG+ VHGT+ D +MN HL++VK+ + LD+IS+RGNNIRY
Sbjct: 2 KLNNESVTIELKNGSVVHGTMINCDPSMNAHLRSVKLITRNLPACNLDTISIRGNNIRYV 61
Query: 66 ILPDSLPLETLLIDDAPRSKGKR 88
ILPDSLPL+TLL+DDAP+ K +
Sbjct: 62 ILPDSLPLDTLLVDDAPQPKVNK 84
>gi|290988841|ref|XP_002677099.1| predicted protein [Naegleria gruberi]
gi|284090705|gb|EFC44355.1| predicted protein [Naegleria gruberi]
Length = 118
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 71/97 (73%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLS E+VTIELKNGT + GTI GVD++MNTHLK VKMT+KGK P L+ +S+RG+NI
Sbjct: 2 FLMKLSGESVTIELKNGTVIAGTIVGVDMSMNTHLKAVKMTLKGKNPLPLEHMSVRGSNI 61
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGA 99
RY ILP+++ L+ LL D K K+ + G GA
Sbjct: 62 RYVILPETINLDNLLQDTTVHPKPKKKTAGQGPKKGA 98
>gi|452004429|gb|EMD96885.1| hypothetical protein COCHEDRAFT_1163040 [Cochliobolus
heterostrophus C5]
Length = 130
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 64/85 (75%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK +ETVT+ELKNGT V+GTI V MN L+ VK T K ++ LD++++RG+ I
Sbjct: 6 FLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTVRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY ILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYIILPDSLPLDTLLIDDAPKPKNK 90
>gi|451855386|gb|EMD68678.1| hypothetical protein COCSADRAFT_157089 [Cochliobolus sativus
ND90Pr]
Length = 131
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 64/85 (75%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK +ETVT+ELKNGT V+GTI V MN L+ VK T K ++ LD++++RG+ I
Sbjct: 6 FLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTVRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RY ILPDSLPL+TLLIDDAP+ K K
Sbjct: 66 RYIILPDSLPLDTLLIDDAPKPKNK 90
>gi|170596751|ref|XP_001902883.1| Sm protein [Brugia malayi]
gi|158589165|gb|EDP28269.1| Sm protein [Brugia malayi]
Length = 130
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 79/119 (66%), Gaps = 6/119 (5%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
M+L ++ VTIELKNGT V G + VD+AMN HL V MT+K ++P ++D++S+RGNNIRY
Sbjct: 1 MRLRNKFVTIELKNGTVVMGYVSSVDLAMNFHLNRVSMTLKSEKPASVDAVSIRGNNIRY 60
Query: 65 YILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGGPRGR 123
I P++L L+ L+ID ++ R +R+ G ++G RGGR GRGGP GR
Sbjct: 61 IIFPNNLNLDALMIDIPQQT---RRTRKTSGQAHSQGVAVRGGRD---RNSGRGGPCGR 113
>gi|403221309|dbj|BAM39442.1| small ribonucleoprotein D1 [Theileria orientalis strain Shintoku]
Length = 125
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 67/89 (75%), Gaps = 6/89 (6%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK------GKEPTTLDSIS 56
FLMKL++E+VT+ELKNGT + GT+ G+D++MNTHLK VK+ K G LD ++
Sbjct: 6 FLMKLANESVTVELKNGTVLTGTVIGIDISMNTHLKNVKVVNKNSDGKDGPNVVLLDHLT 65
Query: 57 LRGNNIRYYILPDSLPLETLLIDDAPRSK 85
+RGNNIRY+IL DS+PL+TLLIDD P K
Sbjct: 66 VRGNNIRYFILSDSIPLDTLLIDDTPVQK 94
>gi|440302063|gb|ELP94416.1| small nuclear ribonucleoprotein sm D1, putative [Entamoeba
invadens IP1]
Length = 111
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 65/85 (76%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLM+L++E +TIELK+G+ V GT+ GVD MN HLK V++T KGK P TLD ++RGNNI
Sbjct: 6 FLMRLTNEVLTIELKDGSIVTGTVVGVDNYMNIHLKVVQLTPKGKNPITLDQSTIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
R ILP++L L+T LIDD PR K K
Sbjct: 66 RNIILPETLNLDTYLIDDTPRMKVK 90
>gi|183234262|ref|XP_001913982.1| small nuclear ribonucleoprotein Sm D1 [Entamoeba histolytica
HM-1:IMSS]
gi|183237106|ref|XP_655345.2| small nuclear ribonucleoprotein Sm D1 [Entamoeba histolytica
HM-1:IMSS]
gi|169799375|gb|EAL49955.2| small nuclear ribonucleoprotein Sm D1, putative [Entamoeba
histolytica HM-1:IMSS]
gi|169801178|gb|EDS89240.1| small nuclear ribonucleoprotein Sm D1, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449702378|gb|EMD43029.1| LSM domain containing protein [Entamoeba histolytica KU27]
Length = 107
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 62/85 (72%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLM+L++E VTIELK+G + GTI GVD MN HLK VKMT KGK P LD ++RGN I
Sbjct: 6 FLMRLTNEVVTIELKSGAVLTGTIVGVDNYMNVHLKVVKMTQKGKNPINLDQSTVRGNTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
R ILP+SL L+T L+DD PR K K
Sbjct: 66 RNIILPESLNLDTYLVDDTPRLKVK 90
>gi|145536550|ref|XP_001453997.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145538369|ref|XP_001454890.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145543155|ref|XP_001457264.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145544094|ref|XP_001457732.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421741|emb|CAK86600.1| unnamed protein product [Paramecium tetraurelia]
gi|124422667|emb|CAK87493.1| unnamed protein product [Paramecium tetraurelia]
gi|124425079|emb|CAK89867.1| unnamed protein product [Paramecium tetraurelia]
gi|124425550|emb|CAK90335.1| unnamed protein product [Paramecium tetraurelia]
Length = 116
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL +E V +ELKNGT V GTI GVDV MNTHL VK+T+KGK P LD +++RGNNI
Sbjct: 6 FLMKLKNEQVIVELKNGTVVLGTITGVDVRMNTHLSKVKLTLKGKNPVGLDQLTIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ L ++L ++ LL+D++ SK K+
Sbjct: 66 RYFHLSENLQIDNLLVDESI-SKSKK 90
>gi|407040985|gb|EKE40459.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 107
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 62/85 (72%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLM+L++E VTIELK+G + GTI GVD MN HLK VKMT KGK P LD ++RGN I
Sbjct: 6 FLMRLTNEVVTIELKSGAILTGTIVGVDNYMNVHLKVVKMTQKGKNPINLDQSTVRGNTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
R ILP+SL L+T L+DD PR K K
Sbjct: 66 RNIILPESLNLDTYLVDDTPRLKVK 90
>gi|171684873|ref|XP_001907378.1| hypothetical protein [Podospora anserina S mat+]
gi|170942397|emb|CAP68049.1| unnamed protein product [Podospora anserina S mat+]
Length = 125
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 65/85 (76%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMK +E+VTIELK GT + GTI V MNT L+ VKMT +G+E L+++++RG+ I
Sbjct: 6 FLMKCQNESVTIELKGGTIISGTIASVSPQMNTALRNVKMTPRGQETIQLETLNVRGSTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
RYYILPDSLPL++LLIDD+ + K K
Sbjct: 66 RYYILPDSLPLDSLLIDDSSKPKNK 90
>gi|71033657|ref|XP_766470.1| small nuclear ribonucleoprotein D1 [Theileria parva strain
Muguga]
gi|68353427|gb|EAN34187.1| small nuclear ribonucleoprotein D1, putative [Theileria parva]
Length = 125
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 69/89 (77%), Gaps = 6/89 (6%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK---GKEPTT---LDSIS 56
FLMKL++E +T+ELKNGT + G + G+D++MNTHLK+VK+ K GKE T LD ++
Sbjct: 6 FLMKLANEELTLELKNGTVITGVVIGIDISMNTHLKSVKVVTKGPDGKEGTNVVLLDHLT 65
Query: 57 LRGNNIRYYILPDSLPLETLLIDDAPRSK 85
+RGNNIRY++L +S+PL+TLLIDD P K
Sbjct: 66 VRGNNIRYFLLSESIPLDTLLIDDTPVQK 94
>gi|47229386|emb|CAF99374.1| unnamed protein product [Tetraodon nigroviridis]
Length = 206
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Query: 28 GVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGK 87
GVDV+MNTHLK VKMT+K +EPT L+S+S+RGNNIRY+ILPDSLPL+TLL+D P+ K K
Sbjct: 1 GVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKIKSK 60
Query: 88 RDSRRGGGAGGARGRGGRGGRGGG 111
+ R G RGR G
Sbjct: 61 K--REAGVNMSDRGRFMYFAFGSN 82
>gi|167377383|ref|XP_001734381.1| small nuclear ribonucleoprotein sm D1 [Entamoeba dispar SAW760]
gi|165904137|gb|EDR29468.1| small nuclear ribonucleoprotein sm D1, putative [Entamoeba dispar
SAW760]
Length = 107
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 62/85 (72%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLM+L++E VTIELK+G + GTI GVD MN HLK VKMT KGK P LD ++RGN I
Sbjct: 6 FLMRLTNEVVTIELKSGVILTGTIVGVDNYMNVHLKVVKMTQKGKNPIDLDQSTVRGNTI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGK 87
R ILP+SL L+T L+DD PR K K
Sbjct: 66 RNIILPESLNLDTYLVDDTPRLKVK 90
>gi|322782519|gb|EFZ10468.1| hypothetical protein SINV_13020 [Solenopsis invicta]
Length = 67
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/55 (83%), Positives = 51/55 (92%)
Query: 28 GVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAP 82
GVDVAMNTHLKTVKMT+K +EP L+++SLRGNNIRYYILPDSLPLETLLIDD P
Sbjct: 1 GVDVAMNTHLKTVKMTIKNREPIQLETLSLRGNNIRYYILPDSLPLETLLIDDTP 55
>gi|399217465|emb|CCF74352.1| unnamed protein product [Babesia microti strain RI]
Length = 133
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 70/99 (70%), Gaps = 12/99 (12%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKM------------TVKGKEPT 50
FLMKL++E+VTIELKNGT + GT+ GVD++MNTHLK VK+ V +
Sbjct: 6 FLMKLANESVTIELKNGTVLTGTVTGVDISMNTHLKNVKVVVKKDPLSDTDKAVNSPQYI 65
Query: 51 TLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRD 89
LD +++RGNNIRY+IL DSLPL+TLLIDD P+ K R+
Sbjct: 66 LLDHLTVRGNNIRYFILSDSLPLDTLLIDDTPKQKPPRE 104
>gi|224003195|ref|XP_002291269.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973045|gb|EED91376.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 120
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 63/87 (72%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ FL KL+ E VTIELKNGT + GT+ GVD MN HLK K+T KGK P + ++S+RG+
Sbjct: 4 VKFLQKLNREQVTIELKNGTVISGTVVGVDATMNAHLKKAKLTAKGKNPVSYATLSVRGS 63
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK 87
+R +ILPD L L+ LL++DAP++ K
Sbjct: 64 TVRSWILPDGLNLDALLVEDAPKNVQK 90
>gi|402589502|gb|EJW83434.1| Sm protein [Wuchereria bancrofti]
Length = 137
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
M FLM+L + VTIELKNGT V G + VD+AMN HL V MT+K ++P ++D++S+RGN
Sbjct: 4 MRFLMRLHDKFVTIELKNGTVVMGYVSSVDLAMNFHLNRVAMTLKSEKPVSMDAVSIRGN 63
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK 87
NIRY I P +L L+ L+I D P+ + K
Sbjct: 64 NIRYVIFPKNLNLDALMI-DVPQQRKK 89
>gi|327348897|gb|EGE77754.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
ATCC 18188]
Length = 188
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 66/92 (71%), Gaps = 5/92 (5%)
Query: 1 MNFLMKLSHETVTIE---LKN--GTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSI 55
+N M + TV + L+N GT +HGTI V MNT L+TVKMT KG++P +LD+I
Sbjct: 64 VNHFMCIYVLTVIVANSLLRNSLGTILHGTITSVSPQMNTALRTVKMTPKGRDPISLDTI 123
Query: 56 SLRGNNIRYYILPDSLPLETLLIDDAPRSKGK 87
++RG+ IRYYILPDSLPL+TLL+DD P+ K K
Sbjct: 124 NIRGSTIRYYILPDSLPLDTLLVDDTPKPKNK 155
>gi|254574234|ref|XP_002494226.1| hypothetical protein [Komagataella pastoris GS115]
gi|238034025|emb|CAY72047.1| Hypothetical protein PAS_chr4_0781 [Komagataella pastoris GS115]
gi|328353953|emb|CCA40350.1| Probable small nuclear ribonucleoprotein Sm D1 [Komagataella
pastoris CBS 7435]
Length = 115
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 3/95 (3%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL E V +ELKNGT V GTI V +MN +LK VKMTV+ + P +L+ I++RGNN+
Sbjct: 6 FLMKLISEQVQVELKNGTIVSGTIISVTPSMNINLKNVKMTVRNRNPVSLEFINIRGNNV 65
Query: 63 RYYILPDSLPLETLLIDDA--PRSK-GKRDSRRGG 94
R ILPD+L L++LL D P++K K+D RGG
Sbjct: 66 RIVILPDNLNLDSLLTDSLVKPKNKVAKKDPIRGG 100
>gi|226529652|ref|NP_001152576.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|195657675|gb|ACG48305.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|413922839|gb|AFW62771.1| small nuclear ribonucleoprotein Sm D1 isoform 1 [Zea mays]
gi|413922840|gb|AFW62772.1| small nuclear ribonucleoprotein Sm D1 isoform 2 [Zea mays]
Length = 95
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 53/61 (86%)
Query: 28 GVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGK 87
VD++MNTHLKTVK+T+KGK P TLD +S+RGNNIRYYILPDSL LETLL+++ PR K K
Sbjct: 12 SVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPK 71
Query: 88 R 88
+
Sbjct: 72 K 72
>gi|167392342|ref|XP_001740112.1| small nuclear ribonucleoprotein sm D1 [Entamoeba dispar SAW760]
gi|165895904|gb|EDR23487.1| small nuclear ribonucleoprotein sm D1, putative [Entamoeba dispar
SAW760]
Length = 100
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 60/83 (72%)
Query: 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
M+L++E VTIELK+G + GTI GVD MN HLK VKMT KGK P LD ++RGN IR
Sbjct: 1 MRLTNEVVTIELKSGMILTGTIVGVDNYMNVHLKVVKMTQKGKNPIDLDQSTVRGNTIRN 60
Query: 65 YILPDSLPLETLLIDDAPRSKGK 87
ILP+SL L+T L+DD PR K K
Sbjct: 61 IILPESLNLDTYLVDDTPRLKVK 83
>gi|340381802|ref|XP_003389410.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like,
partial [Amphimedon queenslandica]
Length = 88
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 54/60 (90%)
Query: 29 VDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKR 88
VD++MNTHLK+VK+T+KG+EP LD++SLRGNNIRYYILP+S+PL+TLL+DD R K K+
Sbjct: 1 VDMSMNTHLKSVKLTLKGREPLALDTLSLRGNNIRYYILPESVPLDTLLVDDTTRRKTKK 60
>gi|227206386|dbj|BAH57248.1| AT3G07590 [Arabidopsis thaliana]
Length = 79
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 49/56 (87%)
Query: 33 MNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKR 88
MNTHLKTVKM++KGK P TLD +SLRGNNIRYYILPDSL LETLL++D PR K K+
Sbjct: 1 MNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYILPDSLNLETLLVEDTPRVKPKK 56
>gi|123485483|ref|XP_001324496.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121907380|gb|EAY12273.1| hypothetical protein TVAG_160790 [Trichomonas vaginalis G3]
Length = 111
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 62/82 (75%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
++FL KL ETVT+ELK+ T + GT+ GVD AMNTHL+ V + G+E L+++++RG
Sbjct: 4 VHFLRKLVRETVTVELKDNTVIKGTVVGVDSAMNTHLRLVHIKAPGQEEKRLENLTIRGA 63
Query: 61 NIRYYILPDSLPLETLLIDDAP 82
+IRY ILPD L L+TLL+DD+P
Sbjct: 64 SIRYVILPDVLNLDTLLVDDSP 85
>gi|222824860|emb|CAM12244.2| small nuclear ribonucleoprotein D1 [Danio rerio]
Length = 85
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 49/56 (87%)
Query: 33 MNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKR 88
MNTHLK VKMT+K +EPT L+S+S+RGNNIRY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 2 MNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKVKSKK 57
>gi|147857948|emb|CAN80377.1| hypothetical protein VITISV_038700 [Vitis vinifera]
Length = 79
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 50/58 (86%)
Query: 33 MNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRDS 90
MNTHLKTVK+T+KGK P TLD +S+RGNNIRYYILPDSL LETLL+++ PR K K+ +
Sbjct: 1 MNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPT 58
>gi|406603457|emb|CCH45013.1| putative U6 snRNA-associated Sm-like protein LSm4 [Wickerhamomyces
ciferrii]
Length = 112
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV IELKN T + GTI V MN LK VKM +K ++P LD I++RGN I
Sbjct: 6 FLMKLNNETVQIELKNQTIIQGTIISVSPNMNIILKKVKMNIKNRDPQLLDYINIRGNMI 65
Query: 63 RYYILPDSLPLETLLIDDAP---RSKGKRDSRRGGGAGGARGRGGRG 106
R ILPDSL L+ LL + + K K+DS G G + R RG
Sbjct: 66 RDVILPDSLNLDVLLQESSIGLNNKKRKQDSTTSVGGGNVK-RVKRG 111
>gi|308802874|ref|XP_003078750.1| small nuclear riboprotein Sm-D1-like protein (ISS) [Ostreococcus
tauri]
gi|116057203|emb|CAL51630.1| small nuclear riboprotein Sm-D1-like protein (ISS), partial
[Ostreococcus tauri]
Length = 133
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 49/56 (87%)
Query: 28 GVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAPR 83
GVDV+MNTHLK VK+T+KGK PT ++ +S+RGN IRYYILPDSL L+TLL+DD P+
Sbjct: 52 GVDVSMNTHLKQVKLTLKGKNPTNVEHLSVRGNTIRYYILPDSLNLDTLLVDDTPK 107
>gi|145344118|ref|XP_001416585.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576811|gb|ABO94878.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 56
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 49/56 (87%)
Query: 28 GVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAPR 83
GVDV+MNTHLK VK+T+KGK PT ++ +S+RGN IRYYILPDSL L+TLL+DD P+
Sbjct: 1 GVDVSMNTHLKQVKLTLKGKNPTAVEHLSVRGNTIRYYILPDSLNLDTLLVDDTPK 56
>gi|291243483|ref|XP_002741625.1| PREDICTED: small nuclear ribonucleoprotein D1 polypeptide
16kDa-like isoform 2 [Saccoglossus kowalevskii]
Length = 83
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 45/50 (90%)
Query: 33 MNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAP 82
MNTHLK VKMTV+ K+P +D++S+RGNNIRY+ILPDSLPL+TLL+DD P
Sbjct: 1 MNTHLKAVKMTVRNKDPVQIDTLSIRGNNIRYFILPDSLPLDTLLVDDTP 50
>gi|219123909|ref|XP_002182258.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406219|gb|EEC46159.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 110
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 62/83 (74%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ FL KL+ E VTIELKNGT V GT+ GVD MN HLK K+TV+GK P ++S+RG+
Sbjct: 4 VKFLQKLNREQVTIELKNGTVVQGTVVGVDSTMNCHLKKAKVTVRGKNPVPYATLSVRGS 63
Query: 61 NIRYYILPDSLPLETLLIDDAPR 83
+R +ILP+SL L+ LL+DDAP+
Sbjct: 64 TMRSWILPESLNLDALLVDDAPK 86
>gi|448082775|ref|XP_004195217.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
gi|359376639|emb|CCE87221.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
Length = 129
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 65/119 (54%), Gaps = 8/119 (6%)
Query: 3 FLMKLSHET---VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRG 59
FLM S+ T VT+ELKNG+ ++G I +MN +K VK+ ++P L +++RG
Sbjct: 6 FLMNFSNYTSQPVTLELKNGSSINGQILSCSPSMNISMKNVKLIRPHQDPQLLQYMNIRG 65
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGK-----RDSRRGGGAGGARGRGGRGGRGGGRG 113
N IR ILPD L ++++L A KG+ S G G GA GR R RGG R
Sbjct: 66 NQIRLVILPDDLNIDSVLAKSAVTIKGQGAGPGSQSTNGIGTKGAMGRNKRAPRGGARA 124
>gi|327266174|ref|XP_003217881.1| PREDICTED: hypothetical protein LOC100555980 [Anolis carolinensis]
Length = 264
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 51/70 (72%), Gaps = 5/70 (7%)
Query: 19 GTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLI 78
GTQVHG I GVDV+MNT LK VKMT+K +E L+++S IR +ILPDSL L+TLL+
Sbjct: 177 GTQVHGIITGVDVSMNTDLKAVKMTLKNRELIQLETLS-----IRNFILPDSLSLDTLLV 231
Query: 79 DDAPRSKGKR 88
D P+ K K+
Sbjct: 232 DVEPKVKSKK 241
>gi|255712609|ref|XP_002552587.1| KLTH0C08382p [Lachancea thermotolerans]
gi|238933966|emb|CAR22149.1| KLTH0C08382p [Lachancea thermotolerans CBS 6340]
Length = 139
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 20/100 (20%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGK------------- 47
++FLMKL +E VTIELKNGT V GT+Q V MN L VK+++ K
Sbjct: 4 VHFLMKLRNEQVTIELKNGTTVWGTLQTVSPQMNATLTDVKLSLPNKSGNSAVASVFLSG 63
Query: 48 -------EPTTLDSISLRGNNIRYYILPDSLPLETLLIDD 80
+ T+L I++RGN IR ILPDSL L+TLL+D+
Sbjct: 64 GQRNSEQKTTSLQYINIRGNTIRQIILPDSLNLDTLLVDE 103
>gi|398365525|ref|NP_011588.3| Smd1p [Saccharomyces cerevisiae S288c]
gi|417779|sp|Q02260.1|SMD1_YEAST RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|172624|gb|AAA35055.1| D1 snRNP [Saccharomyces cerevisiae]
gi|264807|gb|AAB25229.1| core snRNP polypeptide D1, Smd1p=SMD1 product [Saccharomyces
cerevisiae=yeast, Peptide, 146 aa]
gi|1323102|emb|CAA97076.1| SMD1 [Saccharomyces cerevisiae]
gi|51013145|gb|AAT92866.1| YGR074W [Saccharomyces cerevisiae]
gi|151943351|gb|EDN61664.1| Sm D1 [Saccharomyces cerevisiae YJM789]
gi|190406906|gb|EDV10173.1| small nuclear ribonucleoprotein Sm D1 [Saccharomyces cerevisiae
RM11-1a]
gi|256269109|gb|EEU04445.1| Smd1p [Saccharomyces cerevisiae JAY291]
gi|259146577|emb|CAY79834.1| Smd1p [Saccharomyces cerevisiae EC1118]
gi|285812267|tpg|DAA08167.1| TPA: Smd1p [Saccharomyces cerevisiae S288c]
gi|349578285|dbj|GAA23451.1| K7_Smd1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 146
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 69/146 (47%), Gaps = 31/146 (21%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK--------------- 45
+NFL KL +E VTIELKNGT V GT+Q V MN L VK+T+
Sbjct: 4 VNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMA 63
Query: 46 ------GKEPT------TLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRG 93
G++PT +L I++RGN IR ILPDSL L++LL+D K RR
Sbjct: 64 SLYLTGGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVD----QKQLNSLRRS 119
Query: 94 GGAGGARGRGGRGGRGGGRGGRGRGG 119
G + R G R R G
Sbjct: 120 GQIANDPSKKRRRDFGAPANKRPRRG 145
>gi|448087362|ref|XP_004196309.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
gi|359377731|emb|CCE86114.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
Length = 129
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 11/123 (8%)
Query: 3 FLMKLSHET---VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRG 59
FLM S+ T VT+ELKNG+ ++G I +MN +K VK+ ++P L +++RG
Sbjct: 6 FLMNFSNYTSQPVTLELKNGSSINGQILSCSPSMNISMKNVKLIRPHQDPQLLQYMNIRG 65
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
N IR ILPD L ++++L A KG+ G G++ G G +G GR +G
Sbjct: 66 NQIRLVILPDDLNIDSVLAKSAVTIKGQ------GAGPGSQNTNGIGSKGA--LGRNKGA 117
Query: 120 PRG 122
PRG
Sbjct: 118 PRG 120
>gi|403218061|emb|CCK72553.1| hypothetical protein KNAG_0K01890 [Kazachstania naganishii CBS
8797]
Length = 122
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLK--TVKMTVKGKEPTTLDSISLR 58
+ FL KL +E VT+ELKNG+ V GT++ V MN L T+ + G P + +I++R
Sbjct: 4 VQFLKKLRNEQVTVELKNGSTVWGTVEAVSPQMNVTLSRATLTLATTGPSPMVIQNINVR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARG 101
GN IR +LP+SL L+ LL+D + +R R G A R
Sbjct: 64 GNTIRQILLPESLNLDALLVDPQEVAALRRRGRVGAVASRKRA 106
>gi|363753270|ref|XP_003646851.1| hypothetical protein Ecym_5270 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890487|gb|AET40034.1| hypothetical protein Ecym_5270 [Eremothecium cymbalariae
DBVPG#7215]
Length = 142
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 58/109 (53%), Gaps = 23/109 (21%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGK--------------- 47
FLMKL +E VTIELKNGT V GT+Q V MN L V++++ K
Sbjct: 6 FLMKLRNEQVTIELKNGTTVWGTLQTVSPQMNATLTEVRLSLPSKTSKASVASVYLTGAV 65
Query: 48 --------EPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKR 88
T+L I++RGN IR ILPDSL L+ LL+D S+ KR
Sbjct: 66 PQIGEGDRSTTSLQYINIRGNTIRQIILPDSLNLDVLLVDKNEVSRLKR 114
>gi|254578406|ref|XP_002495189.1| ZYRO0B05456p [Zygosaccharomyces rouxii]
gi|238938079|emb|CAR26256.1| ZYRO0B05456p [Zygosaccharomyces rouxii]
Length = 143
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 69/141 (48%), Gaps = 26/141 (18%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKM------------------ 42
+NFL KL +E VT+ELKNGT V GT+Q V MN L V++
Sbjct: 6 VNFLKKLRNEQVTVELKNGTTVWGTLQTVSPQMNATLTDVRLSLPRSTSNSSTLASVYLS 65
Query: 43 --TVKGKEP--TTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGG 98
++ EP T+L I++RG+ IR ILPDSL +++LL+D+ +K RR G
Sbjct: 66 DGSLSQNEPSTTSLQYINIRGSTIRQIILPDSLNIDSLLVDERQLNKL----RRAGKVSN 121
Query: 99 ARGRGGRGGRGGGRGGRGRGG 119
+ R G R R G
Sbjct: 122 DSNKKRRADFGENTNKRIRRG 142
>gi|401837374|gb|EJT41310.1| SMD1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 146
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 62/129 (48%), Gaps = 27/129 (20%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV---------------- 44
+NFL KL +E VTIELKNGT V GT+Q V MN L VK+T+
Sbjct: 4 VNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPLPRLNKLNGNGLAMS 63
Query: 45 -----------KGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRG 93
G +L I++RGN IR ILPDSL L++LL+D S +R +
Sbjct: 64 SLYLTGGQQAATGDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQKQLSSLRRSGQIA 123
Query: 94 GGAGGARGR 102
+ R R
Sbjct: 124 NDSNKKRRR 132
>gi|45190808|ref|NP_985062.1| AER205Wp [Ashbya gossypii ATCC 10895]
gi|44983850|gb|AAS52886.1| AER205Wp [Ashbya gossypii ATCC 10895]
gi|374108287|gb|AEY97194.1| FAER205Wp [Ashbya gossypii FDAG1]
Length = 144
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 57/111 (51%), Gaps = 25/111 (22%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP------------- 49
FLMKL E VTIELKNGT V GT+Q V MN L V++++ K P
Sbjct: 6 FLMKLRSEQVTIELKNGTTVWGTLQTVSPQMNATLTDVRLSLPAKAPKSALASVYLTGSA 65
Query: 50 ------------TTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKR 88
+L I++RGN IR ILPDSL L+ LL+D ++ KR
Sbjct: 66 PESDASQEDRRTASLQYINIRGNTIRQIILPDSLNLDALLVDKNEINRLKR 116
>gi|410081485|ref|XP_003958322.1| hypothetical protein KAFR_0G01530 [Kazachstania africana CBS 2517]
gi|372464910|emb|CCF59187.1| hypothetical protein KAFR_0G01530 [Kazachstania africana CBS 2517]
Length = 148
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 68/137 (49%), Gaps = 29/137 (21%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMT----------------- 43
+NFL KL +E VT+ELKNGT + GT+Q V MN L V +T
Sbjct: 4 VNFLKKLRNEQVTVELKNGTTIWGTLQTVSPQMNVTLTDVALTLPNNNHSNSPSALASMY 63
Query: 44 VKGKEP------------TTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRDSR 91
+ GK P T+L I++RGN IR ILPDSL L++LLID+ ++ +R +
Sbjct: 64 LTGKGPSNEGATSGDKITTSLQYINVRGNTIRQIILPDSLNLDSLLIDETQLNRLRRQGK 123
Query: 92 RGGGAGGARGRGGRGGR 108
A R R G +
Sbjct: 124 VVSDANKKRRRDFDGQQ 140
>gi|366997735|ref|XP_003683604.1| hypothetical protein TPHA_0A00850 [Tetrapisispora phaffii CBS 4417]
gi|357521899|emb|CCE61170.1| hypothetical protein TPHA_0A00850 [Tetrapisispora phaffii CBS 4417]
Length = 156
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 69/150 (46%), Gaps = 37/150 (24%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMT----------------- 43
+NFL KL +E VTIELKNGT V GT+Q V MN L VK++
Sbjct: 8 VNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNATLTDVKLSLPHNKNSSRSKVVNPTA 67
Query: 44 ----------------VKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGK 87
+ G T+L I++RGN IR ILPDSL L++LL+D+ +K
Sbjct: 68 LASLYLIDNQSNNVNDLNGDTTTSLQYINIRGNTIRQIILPDSLNLDSLLVDERQLNKL- 126
Query: 88 RDSRRGGGAGGARGRGGRGGRGGGRGGRGR 117
R+ G + R R G G R R
Sbjct: 127 ---RKIGKVSDDQNRKRRRDFGDEVGKRPR 153
>gi|401625663|gb|EJS43661.1| smd1p [Saccharomyces arboricola H-6]
Length = 146
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 58/106 (54%), Gaps = 27/106 (25%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK--------------- 45
+NFL KL +E VTIELKNGT V GT+Q V MN L VK+T+
Sbjct: 4 VNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMS 63
Query: 46 ------GKEPTT------LDSISLRGNNIRYYILPDSLPLETLLID 79
G++ TT L I++RGN IR ILPDSL L++LL+D
Sbjct: 64 SLYLTGGQQATTGDNIASLQYINIRGNTIRQIILPDSLNLDSLLVD 109
>gi|50291695|ref|XP_448280.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527592|emb|CAG61241.1| unnamed protein product [Candida glabrata]
Length = 151
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 30/146 (20%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMT----------------- 43
+NFL KL +E VT+ELKNGT V GT+Q V MN + V ++
Sbjct: 5 VNFLKKLKNEQVTLELKNGTTVWGTLQSVSSQMNVTVTDVVLSLPKSQSGKVSGGPGALA 64
Query: 44 ----VKGKEP---------TTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRDS 90
V +P +L +++RGN IR ILPDSL L++LL+D+A + K+ S
Sbjct: 65 SVYLVNNAQPDKANNDDGSVSLQYMNIRGNTIRQIILPDSLNLDSLLVDEAQVKRLKKAS 124
Query: 91 RRGGGAGGARGRGGRGGRGGGRGGRG 116
+ + R G R RG
Sbjct: 125 AKPSETNYRKRRNEFSGNTAKRIKRG 150
>gi|365983414|ref|XP_003668540.1| hypothetical protein NDAI_0B02620 [Naumovozyma dairenensis CBS 421]
gi|343767307|emb|CCD23297.1| hypothetical protein NDAI_0B02620 [Naumovozyma dairenensis CBS 421]
Length = 153
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 67/137 (48%), Gaps = 34/137 (24%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV---------------- 44
+NFL KL +E VTIELKNGT V GT+Q V MNT L VK+++
Sbjct: 4 VNFLKKLRNEQVTIELKNGTTVWGTLQTVSPQMNTTLTDVKLSLPRNASQGISAGSVAIA 63
Query: 45 -----------KGKEP-------TTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKG 86
P T+L I++RGN IR ILPDSL L++LL+D+ +K
Sbjct: 64 SVYLTNGTSGTSNNNPTGIESSTTSLQYINIRGNTIRQIILPDSLNLDSLLVDEKELNKL 123
Query: 87 KRDSRRGGGAGGARGRG 103
++ + + R RG
Sbjct: 124 RKLGKVSDDSNRKRKRG 140
>gi|255722764|ref|XP_002546316.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240130833|gb|EER30395.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 129
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 8/99 (8%)
Query: 3 FLMKLSHET---VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRG 59
FLM + + T VT+ELKNG + GT+ + +MN +LK VK+ ++P LD I++RG
Sbjct: 6 FLMNIPNSTNQPVTVELKNGNVISGTMLSCNPSMNLNLKNVKLQQPLQDPILLDFINIRG 65
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGG 98
N +R ILPD L +E++L + KG +G G G
Sbjct: 66 NQVRQIILPDELNIESVLSKSETKIKG-----QGAGPGA 99
>gi|195378767|ref|XP_002048153.1| GJ11498 [Drosophila virilis]
gi|194155311|gb|EDW70495.1| GJ11498 [Drosophila virilis]
Length = 80
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 37/41 (90%)
Query: 42 MTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAP 82
MT+K ++P L+S+S+RGNNIRY+ILPDSLPLETLLIDD P
Sbjct: 1 MTIKNRDPVHLESLSIRGNNIRYFILPDSLPLETLLIDDTP 41
>gi|344303431|gb|EGW33680.1| hypothetical protein SPAPADRAFT_59049 [Spathaspora passalidarum
NRRL Y-27907]
Length = 123
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 3 FLMKLSHET---VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRG 59
FLM + + T +T+ELKNGT ++GT+ +MN LK VK+ ++ T L I++RG
Sbjct: 6 FLMNIPNSTNQPLTVELKNGTTINGTLMSCSPSMNLSLKNVKLQQPLQDATLLQFINIRG 65
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGG--RGGRGR 117
N IR +LPD L ++++L + K + GAG + R GG RGG+ R
Sbjct: 66 NQIRQILLPDELNIDSILAKSVTKIKKQ-------GAGPSAKPATTNKRAGGPMRGGKTR 118
>gi|50306519|ref|XP_453233.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642367|emb|CAH00329.1| KLLA0D03773p [Kluyveromyces lactis]
Length = 141
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 22/127 (17%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV------------------ 44
FL KL +E V+IELKNGT V G ++ V MN L V++T+
Sbjct: 6 FLKKLKNERVSIELKNGTTVWGIVRSVSPQMNVSLTDVRLTLPTKTSEATLAAVLLSGGS 65
Query: 45 ----KGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGAR 100
+ K T+L+ I++RGN IR ILPDS+ L+ LL+D ++ ++ + G R
Sbjct: 66 TQGQESKRTTSLEFINIRGNTIRQIILPDSINLDALLVDQQEVNRLRKQGKVGSDPNKKR 125
Query: 101 GRGGRGG 107
G
Sbjct: 126 SLESNGN 132
>gi|146411987|ref|XP_001481965.1| hypothetical protein PGUG_05728 [Meyerozyma guilliermondii ATCC
6260]
gi|146393472|gb|EDK41630.1| hypothetical protein PGUG_05728 [Meyerozyma guilliermondii ATCC
6260]
Length = 121
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 3 FLMKLSHET---VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRG 59
FLM + T +T+ELKNGT V GT+ +MN LK +K+ ++P L +++RG
Sbjct: 6 FLMNMPSSTGQPITVELKNGTSVSGTLLSCTPSMNLSLKNIKLVQPHQDPQLLQFMNIRG 65
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGK 87
N IR ILPD L +E++L + KG+
Sbjct: 66 NQIRQIILPDDLNIESVLSKSQVKIKGQ 93
>gi|68473251|ref|XP_719431.1| hypothetical protein CaO19.7673 [Candida albicans SC5314]
gi|46441248|gb|EAL00547.1| hypothetical protein CaO19.7673 [Candida albicans SC5314]
gi|238880442|gb|EEQ44080.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 116
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 3 FLMKLSHET---VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRG 59
FLM + + T +T+ELKNG + GT+ + +MN HLK V++ ++P L I++RG
Sbjct: 6 FLMNIPNSTNQPITVELKNGNIISGTLLSCNPSMNLHLKNVRLQQPLQDPILLQYINIRG 65
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKG 86
N +R +LPD L +E++L + KG
Sbjct: 66 NQVRQILLPDELNIESVLAKSETKIKG 92
>gi|241959636|ref|XP_002422537.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
gi|223645882|emb|CAX40545.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
Length = 126
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 3 FLMKLSHET---VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRG 59
FLM + + T +T+ELKNG + GT+ + MN +LK VK+ ++P L I++RG
Sbjct: 6 FLMNIPNSTTQPITVELKNGNIISGTLLSCNPPMNLNLKNVKLQQPLQDPILLQYINIRG 65
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGG 107
N +R +LPD L +E++L+ K +++ G G R G
Sbjct: 66 NQVRQILLPDELNIESVLV--------KSETKIKGNGAGPSARPATNG 105
>gi|444320507|ref|XP_004180910.1| hypothetical protein TBLA_0E03370 [Tetrapisispora blattae CBS 6284]
gi|387513953|emb|CCH61391.1| hypothetical protein TBLA_0E03370 [Tetrapisispora blattae CBS 6284]
Length = 144
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 65/144 (45%), Gaps = 29/144 (20%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEP---------- 49
+NFL KL +E +TIELKNGT + GT+Q V MN L + +++ K P
Sbjct: 4 VNFLKKLRNEQLTIELKNGTTIWGTLQTVSPQMNVTLTDITLSLPTNKNPQAQAAFFLAS 63
Query: 50 --------------TTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGG 95
L I++RGN IR ILPDSL L++LLID+ + R+ G
Sbjct: 64 NSNNTSSNSSSNSDIQLQYINVRGNTIRQIILPDSLNLDSLLIDEQQLQRL----RKSGK 119
Query: 96 AGGARGRGGRGGRGGGRGGRGRGG 119
+ R G R R G
Sbjct: 120 LVDDSSKKRRRDYGTNTSKRLRRG 143
>gi|154337565|ref|XP_001565015.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062054|emb|CAM45146.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 103
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 44/71 (61%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ FL L V IELKN + V G I VD MNT++ VK+T KGK P ++ +RG+
Sbjct: 14 ITFLQHLRGTLVEIELKNASIVSGEIAYVDANMNTYMSHVKITSKGKNPVEVEEYMVRGS 73
Query: 61 NIRYYILPDSL 71
IRY ILP+SL
Sbjct: 74 TIRYIILPESL 84
>gi|354545656|emb|CCE42383.1| hypothetical protein CPAR2_200260 [Candida parapsilosis]
Length = 118
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 3 FLMKLSHET---VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRG 59
FLM + + T VT+ELKNG ++GT+ +MN +LK VK+ K ++P L I++RG
Sbjct: 6 FLMNIPNSTNQPVTVELKNGNIINGTLLSCTPSMNLNLKNVKLQQKYQDPILLQYINVRG 65
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGK 87
N IR +LP+ L ++++L R KG+
Sbjct: 66 NQIRQILLPEDLNIDSVLEKSQTRIKGQ 93
>gi|260943870|ref|XP_002616233.1| hypothetical protein CLUG_03474 [Clavispora lusitaniae ATCC
42720]
gi|238849882|gb|EEQ39346.1| hypothetical protein CLUG_03474 [Clavispora lusitaniae ATCC
42720]
Length = 115
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 3 FLMKL---SHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRG 59
FLM L +++ VT+ELKNG V+G I +MN +K +K+ ++P + +++RG
Sbjct: 6 FLMTLPSATNQPVTVELKNGNSVNGQILSCSPSMNLSMKNIKLIQPHQDPQLMQFMNIRG 65
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKG 86
N IR +LPD L +E+LL + KG
Sbjct: 66 NQIRQILLPDDLNIESLLSRSTVKMKG 92
>gi|448524829|ref|XP_003869020.1| Smd1 protein [Candida orthopsilosis Co 90-125]
gi|380353373|emb|CCG22883.1| Smd1 protein [Candida orthopsilosis]
Length = 116
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 3 FLMKLSHET---VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRG 59
FLM + + T VT+ELKNG ++GT+ +MN +LK VK+ K ++P L I++RG
Sbjct: 6 FLMNIPNSTNQPVTVELKNGNIINGTLLSCTPSMNLNLKNVKLQQKYQDPILLQYINVRG 65
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGK 87
N IR +LP+ L ++++L + KG+
Sbjct: 66 NQIRQILLPEDLNIDSVLEKSQTKIKGQ 93
>gi|146086705|ref|XP_001465619.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
gi|157869411|ref|XP_001683257.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|398015293|ref|XP_003860836.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
gi|68224141|emb|CAJ04478.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|134069718|emb|CAM68043.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
gi|322499059|emb|CBZ34131.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
Length = 103
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ FL +L V IELKN + V G I VD MNT++ K+T KGK P ++ +RG+
Sbjct: 14 ITFLQQLRGTLVEIELKNASIVSGEIAYVDANMNTYMSHAKITSKGKNPVEVEEYMVRGS 73
Query: 61 NIRYYILPDSL 71
IRY I+P+SL
Sbjct: 74 TIRYIIMPESL 84
>gi|401422144|ref|XP_003875560.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491798|emb|CBZ27071.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 103
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ FL +L V IELKN + V G I VD MNT++ K+T KGK P ++ +RG+
Sbjct: 14 ITFLQQLRGTLVEIELKNASIVSGEISYVDANMNTYMSHAKITSKGKNPVEVEEYMVRGS 73
Query: 61 NIRYYILPDSL 71
IRY I+P+SL
Sbjct: 74 TIRYIIMPESL 84
>gi|71422435|ref|XP_812132.1| small nuclear ribonucleoprotein [Trypanosoma cruzi strain CL
Brener]
gi|71424809|ref|XP_812917.1| small nuclear ribonucleoprotein [Trypanosoma cruzi strain CL
Brener]
gi|70876875|gb|EAN90281.1| small nuclear ribonucleoprotein, putative [Trypanosoma cruzi]
gi|70877751|gb|EAN91066.1| small nuclear ribonucleoprotein, putative [Trypanosoma cruzi]
Length = 98
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FL +L V IEL N + V G I V+ +MNTH++ VK+T KGK P ++ +RGN+I
Sbjct: 12 FLQQLRGTLVEIELLNSSIVSGEITFVEPSMNTHMRHVKITAKGKNPVQAETYVVRGNSI 71
Query: 63 RYYILPDSLPLETLL 77
R+ ILP+++ + +L
Sbjct: 72 RFVILPEAMNTDDVL 86
>gi|294654851|ref|XP_456936.2| DEHA2A13948p [Debaryomyces hansenii CBS767]
gi|199429198|emb|CAG84914.2| DEHA2A13948p [Debaryomyces hansenii CBS767]
Length = 131
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 3 FLMKLSHET---VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRG 59
FLM L + T +T+ELKNG ++G I +MN +K +K++ ++P L I++RG
Sbjct: 6 FLMNLPNATNQPITVELKNGNSINGQILSCSPSMNLSMKNIKLSQPHQDPQLLQFINIRG 65
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKG 86
N IR +LPD L ++ +L + KG
Sbjct: 66 NQIRQILLPDELNVDNVLARSVVKIKG 92
>gi|340054663|emb|CCC48964.1| putative small nuclear ribonucleoprotein [Trypanosoma vivax Y486]
Length = 100
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FL +L V IEL N T G I V+ MNTH++ VK+T KGK P +++ +RG+ I
Sbjct: 12 FLQQLRGTLVEIELNNSTVASGEIAFVEPNMNTHMRHVKITEKGKNPELVETYMVRGSKI 71
Query: 63 RYYILPDSLPLETLLID-DAPRSKG 86
RY ILP+++ + +L A RSK
Sbjct: 72 RYVILPEAMNTDDVLKKASAARSKS 96
>gi|399949948|gb|AFP65604.1| small nuclear ribonucleoprotein D1 [Chroomonas mesostigmatica
CCMP1168]
Length = 90
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 6 KLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYY 65
K+ E VTIELKNG + G I +D MN + K K T+ + +D + +RGN IRY
Sbjct: 9 KILEENVTIELKNGVYISGLIVDIDKHMNIYFKNAKRTLNERNTIFIDHMFIRGNKIRYI 68
Query: 66 ILPDSLPLETLLIDDAPRSKGKRDSRR 92
ILP+ D+ K K++ R+
Sbjct: 69 ILPNWFNF------DSVFFKSKQNFRK 89
>gi|149235059|ref|XP_001523408.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452817|gb|EDK47073.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 125
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 3 FLMKLSHET---VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRG 59
FLM + + T +T+ELKNG V+GT+ + MN +LK VK+ ++P L I++RG
Sbjct: 6 FLMNVPNSTNQPITVELKNGNIVNGTLLSANPQMNLNLKNVKLQQLYQDPILLQYINIRG 65
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGK 87
N IR +LPD L ++ +L + KG+
Sbjct: 66 NQIRQILLPDDLNIDGVLEKSQTKIKGQ 93
>gi|67601489|ref|XP_666403.1| aspartyl protease-like [Cryptosporidium hominis TU502]
gi|54657392|gb|EAL36172.1| aspartyl protease-like [Cryptosporidium hominis]
Length = 128
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 16/123 (13%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL +E VTIELK+G GT+ V+ MN L+ V T++ +P +L+ LRG+
Sbjct: 7 LKLLYEGLGHIVTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDGKPVSLEQCYLRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSK----GKRDSRRGGGAGGARGRGGRG-GRGGGRGGR 115
IR+ ILPD ++ +AP K K + G AG + R RG RG
Sbjct: 67 QIRFCILPD-------MLKNAPMFKLAANAKNRASVLGAAGNKKAFAARFISRGTSRGRS 119
Query: 116 GRG 118
GRG
Sbjct: 120 GRG 122
>gi|66362186|ref|XP_628057.1| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum
Iowa II]
gi|46227630|gb|EAK88565.1| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum
Iowa II]
Length = 143
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 13/121 (10%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL +E VTIELK+G GT+ V+ MN L+ V T++ +P +L+ LRG+
Sbjct: 29 LKLLYEGLGHIVTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDGKPVSLEQCYLRGS 88
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSR-RGGGAGGARGRGGRGGRGGGRG-GRGRG 118
IR+ ILPD ++ +AP K +++ R G A + R RG RGR
Sbjct: 89 QIRFCILPD-------MLKNAPMFKLAANAKNRASVLGAAGNKKAFAARFISRGTSRGRS 141
Query: 119 G 119
G
Sbjct: 142 G 142
>gi|357519697|ref|XP_003630137.1| Small nuclear ribonucleoprotein Sm D3 [Medicago truncatula]
gi|355524159|gb|AET04613.1| Small nuclear ribonucleoprotein Sm D3 [Medicago truncatula]
gi|388503694|gb|AFK39913.1| unknown [Medicago truncatula]
Length = 131
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G G + + N L+++ T K + + L+ + +RG+
Sbjct: 9 VKLLHEASGHVVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSR-RGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+R+ ++PD ++ +AP K + D+R +G GA GRG GRG
Sbjct: 69 KVRFMVIPD-------MLKNAPMFK-RLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGA 120
Query: 120 PRGRGGPPRR 129
P GRG PP R
Sbjct: 121 PPGRGVPPVR 130
>gi|342181938|emb|CCC91417.1| small nuclear ribonucleoprotein SmD1 [Trypanosoma congolense
IL3000]
Length = 106
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FL +L V IE+ N T G I V+ MNTH++ VK+T KGK P +D+ + G+ I
Sbjct: 12 FLQQLRGTQVEIEMMNSTIATGEITFVEPNMNTHMRHVKITAKGKNPEMVDTYMVCGSKI 71
Query: 63 RYYILPDSLPLETLLI 78
RY I+P+++ + +L+
Sbjct: 72 RYVIMPEAINTDDVLL 87
>gi|330038573|ref|XP_003239635.1| small nuclear ribonucleoprotein D1 [Cryptomonas paramecium]
gi|327206559|gb|AEA38737.1| small nuclear ribonucleoprotein D1 [Cryptomonas paramecium]
Length = 88
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNN 61
N ++ +ETVTIELKNG +HG + D MN +LK +K T K ++SIS+RG++
Sbjct: 4 NVFYEILNETVTIELKNGLILHGIMLNADKYMNIYLKKIKKTNFSKINLEIESISIRGSS 63
Query: 62 IRYYILPDSLPLETLL 77
I+Y ILP + +++
Sbjct: 64 IKYLILPIWINFDSVF 79
>gi|281201849|gb|EFA76057.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 351
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 26/128 (20%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE +T+EL+NG GT+ + MN ++ + MT K + T ++ I +RG+
Sbjct: 76 VKILHEADSHVITLELRNGDLYRGTLIESEDNMNCRMENITMTAKNGKQTQIEQIYIRGS 135
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGGP 120
IR++ILPD L +AP K R G RG+ G GR
Sbjct: 136 KIRFFILPDMLK-------NAPMFK------RIDGRTVLRGKS---------LGIGRSVG 173
Query: 121 RGRGGPPR 128
R RGGPPR
Sbjct: 174 RARGGPPR 181
>gi|72391282|ref|XP_845935.1| small nuclear ribonucleoprotein SmD1 [Trypanosoma brucei TREU927]
gi|9837174|gb|AAG00461.1|AF280393_1 Sm-D1 [Trypanosoma brucei]
gi|62175276|gb|AAX69421.1| small nuclear ribonucleoprotein SmD1 [Trypanosoma brucei]
gi|70802471|gb|AAZ12376.1| small nuclear ribonucleoprotein SmD1 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261329420|emb|CBH12401.1| SmD-1 like small nuclear ribonucleoprotein,putative [Trypanosoma
brucei gambiense DAL972]
Length = 106
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FL +L V IE+ N T V G I V+ MNT+++ VK+T KGK P ++ + G+ I
Sbjct: 12 FLQQLRGTQVEIEMMNSTIVTGEITFVEANMNTYMRHVKITAKGKNPEMAETYMVCGSKI 71
Query: 63 RYYILPDSLPLETLLI 78
RY ILP+++ + +L+
Sbjct: 72 RYVILPEAMNTDDVLV 87
>gi|388502716|gb|AFK39424.1| unknown [Lotus japonicus]
Length = 133
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G G + + N L+++ T K + + L+ + +RG+
Sbjct: 11 VKLLHEASGHVVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGS 70
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGGP 120
+R+ ++PD ++ +AP K +G GA GRG GRG
Sbjct: 71 KVRFMVIPD-------MLKNAPMFKRLDAKIKGKGASLGVGRGRAVAMRAKAQSAGRGAA 123
Query: 121 RGRGGPPRR 129
GRG PP R
Sbjct: 124 PGRGAPPVR 132
>gi|351721470|ref|NP_001237722.1| uncharacterized protein LOC100305856 [Glycine max]
gi|356525557|ref|XP_003531391.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Glycine max]
gi|255626793|gb|ACU13741.1| unknown [Glycine max]
Length = 131
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G G++ + N L+++ T K + + L+ + +RG+
Sbjct: 9 VKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSR-RGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+R+ ++PD ++ +AP K + D+R +G GA GRG GRG
Sbjct: 69 KVRFMVIPD-------MLKNAPMFK-RLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGA 120
Query: 120 PRGRGGPPRR 129
GRG PP R
Sbjct: 121 APGRGVPPVR 130
>gi|209881474|ref|XP_002142175.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557781|gb|EEA07826.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 126
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
++IE+K+G GT+ V+ MN L TV +T+K P L+ LRG+ IR++ILPD
Sbjct: 16 HIISIEMKSGDLYRGTLAHVEDNMNCMLDTVNVTMKDGRPLALEQCYLRGSQIRFFILPD 75
Query: 70 SLPLETLLIDDAPRSK----GKRDSRRGGGAGGARGRGGR 105
++ +AP K K +R G AG R R
Sbjct: 76 -------MLKNAPMFKLAANAKNRARILGVAGNKRAFANR 108
>gi|164661203|ref|XP_001731724.1| hypothetical protein MGL_0992 [Malassezia globosa CBS 7966]
gi|159105625|gb|EDP44510.1| hypothetical protein MGL_0992 [Malassezia globosa CBS 7966]
Length = 126
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 14/122 (11%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE TVTIELK G G + + N +K + +T + + T LDS+ +RGN
Sbjct: 8 VKLLHEGLGHTVTIELKGGATYRGRLFDAEDNFNISMKDIAVTARDGKQTHLDSVYIRGN 67
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG----GRGGRGGGRGGRG 116
IR+ ++PD L + P ++ +G G G ARGR + RG G GR
Sbjct: 68 MIRFMVVPDMLQQAPMFKRVGP------NAMKGRGIGSARGRATIMRAQARRGRGPSGRP 121
Query: 117 RG 118
+G
Sbjct: 122 QG 123
>gi|12230258|sp|Q43582.1|LSM4_TOBAC RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 10; Short=GRP 10
gi|790473|emb|CAA58702.1| unnamed protein product [Nicotiana tabacum]
Length = 146
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRVPDE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRG 118
+ ID R R+ G G AR RGGR GR +G G
Sbjct: 75 V------IDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIG 116
>gi|157876267|ref|XP_001686492.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|398022728|ref|XP_003864526.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
gi|68129566|emb|CAJ08109.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|322502761|emb|CBZ37844.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
Length = 113
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ L H V+IE+ G HGT++ + MN LK T +G + T +DS+ +RG+
Sbjct: 7 IKVLFDALHLKVSIEVATGEVYHGTVEELQNNMNVLLKDATKTARGGKETKMDSVFVRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSR-RGGGAGGARGRG 103
NI ++ LPD+L L+ +D+R G G G +R R
Sbjct: 67 NIVFFQLPDALQTSPALLRAGEVVSKAKDTRGDGKGFGASRKRA 110
>gi|388579924|gb|EIM20243.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 123
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 21/128 (16%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ VTIELK+G G +Q + +N L+ + +T + + LD + +RG+
Sbjct: 6 IKLVHESLGHVVTIELKSGQMYRGKLQEAEDNLNVSLQDITVTARDGRVSQLDQVYIRGS 65
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
I++ ++PD ++ +AP K ++ +G G G ARGR R R
Sbjct: 66 MIKFLVVPD-------MLQNAPMFKRVGPNAMKGRGIGTARGRAT-IMRANAR------- 110
Query: 120 PRGRGGPP 127
RGRGGPP
Sbjct: 111 -RGRGGPP 117
>gi|401428927|ref|XP_003878946.1| putative small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495195|emb|CBZ30499.1| putative small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 113
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 9 HETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILP 68
H V+IE+ G HGT++ + MN LK T +G + T +DS+ +RG+NI ++ LP
Sbjct: 15 HLKVSIEVATGEVYHGTVEELQNNMNVLLKNATKTARGGKETKMDSVFVRGSNIVFFQLP 74
Query: 69 DSLPLETLLIDDAPRSKGKRDSR-RGGGAGGARGRG 103
D+L L+ +D+R G G G +R R
Sbjct: 75 DALQTSPALLRAGEVVSKAKDTRGDGKGFGASRKRA 110
>gi|344230588|gb|EGV62473.1| hypothetical protein CANTEDRAFT_109388 [Candida tenuis ATCC 10573]
Length = 114
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 1 MNFLMKL---SHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISL 57
++FLM L + VT+ELKNG V+G + MN LK +K+ ++ L+ +++
Sbjct: 4 VSFLMHLPGSTSHPVTVELKNGNSVNGQVLSCSPTMNLALKNIKLIQPHQDAQFLNYMNI 63
Query: 58 RGNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGG 114
RGN IR +LP+ L L+ +L +K K G G+ +G + R G
Sbjct: 64 RGNQIRQVLLPEDLNLDAVLAKCVQNTKSK-------GTSGSVSKGSHKPKPFKRRG 113
>gi|146099718|ref|XP_001468724.1| putative small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
gi|134073092|emb|CAM71812.1| putative small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
Length = 113
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ L H V+IE+ G HGT++ + MN LK T +G + T +DS+ +RG+
Sbjct: 7 IKVLFDALHLKVSIEVATGEVYHGTVEELQNNMNVLLKDATKTARGGKETKMDSVFVRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSR-RGGGAGGARGRG 103
NI ++ LPD+L L+ +D+R G G G +R R
Sbjct: 67 NIVFFQLPDALQTSPALLRAGEVVSKAQDTRGDGKGFGASRKRA 110
>gi|390602523|gb|EIN11916.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 127
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ +T+ELK G G + + +N LK + +T + + LD + +RG+
Sbjct: 10 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVYIRGS 69
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+R++I+PD ++ +AP K ++ RG G G ARGR R R GRG
Sbjct: 70 MVRFFIVPD-------MLQNAPMFKRVGPNAMRGRGIGTARGRAT-IMRANARRGRGVPA 121
Query: 120 PRG 122
PRG
Sbjct: 122 PRG 124
>gi|154336783|ref|XP_001564627.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061662|emb|CAM38693.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 113
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
M L H V+IE+ G HG ++ + MN LK T +G + T +DS+ +RG+
Sbjct: 7 MKVLFDALHLKVSIEVATGEVYHGIVEELQNNMNVLLKNATKTTRGGKETKMDSVFVRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSR-RGGGAGGARGRG 103
NI ++ LPD+L L+ +D+R G G G +R R
Sbjct: 67 NIVFFQLPDALQTSPALLRAGEIVSKAKDTRGDGKGFGASRKRA 110
>gi|393217444|gb|EJD02933.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 126
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ +T+ELK G G + + ++N LK + +T + + LD + +RG+
Sbjct: 9 VKLLHESLGHVITVELKTGQLYRGKLAEAEDSLNISLKDITVTGRDGRVSQLDQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+R++I+PD ++ +AP K ++ RG G G ARGR R R RGRG
Sbjct: 69 MVRFFIVPD-------MLQNAPMFKRVGPNAMRGRGIGTARGRAT-IMRANAR--RGRGQ 118
Query: 120 PRGRG 124
P RG
Sbjct: 119 PAARG 123
>gi|392594010|gb|EIW83335.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 125
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 15/125 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ +T+ELK G G + + +N LK + +T + + LD + +RG+
Sbjct: 8 VKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKDITVTARDGRVSQLDQVYIRGS 67
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
IR++I+PD ++ +AP K ++ RG G G ARGR R R RGRG
Sbjct: 68 MIRFFIVPD-------MLQNAPMFKRVGPNAMRGRGIGTARGRAT-IMRANAR--RGRGV 117
Query: 120 PRGRG 124
P R
Sbjct: 118 PAARA 122
>gi|326428962|gb|EGD74532.1| small nuclear ribonucleoprotein Sm D3 [Salpingoeca sp. ATCC
50818]
Length = 128
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE T+TIELKNG G + + MN+ ++ V T + + T LD++ +RG+
Sbjct: 8 VKLMHEAEGHTITIELKNGEMYRGKLIEAEDNMNSQMRDVTFTARDGQVTQLDTVYIRGS 67
Query: 61 NIRYYILPDSL 71
I++++LPD L
Sbjct: 68 KIKFFVLPDML 78
>gi|395333040|gb|EJF65418.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 128
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 14/125 (11%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ +T+ELK G G + + +N LK + +T + + LD + +RG+
Sbjct: 10 VKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKDITVTQRDGRVSQLDQVYIRGS 69
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+R++I+PD ++ +AP K ++ RG G G ARGR G RGRG
Sbjct: 70 MVRFFIVPD-------MLQNAPMFKRVGPNAMRGRGIGTARGRA--TIMRGASSRRGRGV 120
Query: 120 PRGRG 124
P RG
Sbjct: 121 PAARG 125
>gi|449512675|ref|XP_004164112.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis
sativus]
Length = 132
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 13/128 (10%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE V++ELK+G G++ + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSR-RGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+R+ ++PD ++ +AP K + D+R +G GA GRG GRG
Sbjct: 69 KVRFMVIPD-------MLKNAPMFK-RLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
Query: 120 PRGRGGPP 127
GRG PP
Sbjct: 121 APGRGAPP 128
>gi|357619535|gb|EHJ72069.1| hypothetical protein KGM_17625 [Danaus plexippus]
Length = 138
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+ I+Y +PD + ++ + + +S+G+ + + G GG R GRGG G G RGR
Sbjct: 64 STIKYLRIPDEV-IDMVKEETQVKSRGRGEISK--GRGGQNMRSGRGGSRGAFGNRGRAA 120
Query: 120 PRGRGG 125
P RGG
Sbjct: 121 PLSRGG 126
>gi|85690979|ref|XP_965889.1| small nuclear ribonucleoprotein [Encephalitozoon cuniculi GB-M1]
gi|19068456|emb|CAD24924.1| SMALL NUCLEAR RIBONUCLEOPROTEIN (U1/U2 snRNP) [Encephalitozoon
cuniculi GB-M1]
gi|449329851|gb|AGE96120.1| small nuclear ribonucleoprotein [Encephalitozoon cuniculi]
Length = 99
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ L K +E V IE K G ++ G I VD MN + V + V G +T ++RG+
Sbjct: 4 VRVLRKCKNERVKIETKEGRRIEGKIVSVDKTMNVEM--VDVVVDGAPASTY---TVRGS 58
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGR 102
+IRY + D + + LL+DD PR++ RG G A+ R
Sbjct: 59 SIRYVLFRDDIDFKPLLVDDRPRNRA-----RGQETGKAKRR 95
>gi|403412007|emb|CCL98707.1| predicted protein [Fibroporia radiculosa]
Length = 127
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 15/125 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ +T+ELK G G + + +N LK + +T + + LD + +RG+
Sbjct: 10 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVYIRGS 69
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
IR++I+PD ++ +AP K ++ RG G G ARGR R R RGRG
Sbjct: 70 MIRFFIVPD-------MLQNAPMFKRVGPNAMRGRGIGTARGRAT-IMRANAR--RGRGV 119
Query: 120 PRGRG 124
P RG
Sbjct: 120 PAARG 124
>gi|328866082|gb|EGG14468.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 170
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VTIELKNG GT+ + MN LK V MT + + + L+ I +RG+
Sbjct: 7 VKILHEADSHIVTIELKNGEMYRGTLMQSEDNMNCKLKIVTMTARDGKQSQLEQIYIRGS 66
Query: 61 NIRYYILPDSL 71
IR+ ILPD L
Sbjct: 67 KIRFIILPDIL 77
>gi|449546694|gb|EMD37663.1| hypothetical protein CERSUDRAFT_123559 [Ceriporiopsis subvermispora
B]
Length = 127
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 15/125 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ +T+ELK G G + + +N LK + +T + + LD + +RG+
Sbjct: 10 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKEITVTQRDGRVSQLDQVYIRGS 69
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+R++I+PD ++ +AP K ++ +G G G ARGR R R RGRG
Sbjct: 70 MVRFFIVPD-------MLQNAPMFKRVGPNAMKGRGIGTARGRAT-IMRANAR--RGRGV 119
Query: 120 PRGRG 124
P RG
Sbjct: 120 PAARG 124
>gi|389741899|gb|EIM83087.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 126
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 15/125 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ +T+ELK G G + + +N LK + +T + + LD + +RG+
Sbjct: 9 VKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKEITVTGRDGRISQLDQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+R++I+PD ++ +AP K ++ RG G G ARGR R R RGRG
Sbjct: 69 MVRFFIVPD-------MLQNAPMFKRVGPNAMRGRGIGTARGRAT-IMRANAR--RGRGV 118
Query: 120 PRGRG 124
P RG
Sbjct: 119 PAARG 123
>gi|145495655|ref|XP_001433820.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145545630|ref|XP_001458499.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400940|emb|CAK66423.1| unnamed protein product [Paramecium tetraurelia]
gi|124426319|emb|CAK91102.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 8 SHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYIL 67
+H VT+ELK G G + + MN L V+M + P +L+ + LRG+ IR+ ++
Sbjct: 14 AHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQVYLRGSQIRFVVI 73
Query: 68 PDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGGPRGRGG 125
PD + AP K R A+ + + R R R PR + G
Sbjct: 74 PD-------VFKYAPMFKKIR--------ANAKSKNMQQIREKARQVREELVPRIKQG 116
>gi|148691045|gb|EDL22992.1| mCG14669, isoform CRA_a [Mus musculus]
Length = 98
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/24 (100%), Positives = 24/24 (100%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTI 26
FLMKLSHETVTIELKNGTQVHGTI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTI 29
>gi|367000273|ref|XP_003684872.1| hypothetical protein TPHA_0C02850 [Tetrapisispora phaffii CBS
4417]
gi|357523169|emb|CCE62438.1| hypothetical protein TPHA_0C02850 [Tetrapisispora phaffii CBS
4417]
Length = 95
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L + VT+ELKN ++ GT++ VD +N L + K K P T++ +I +R
Sbjct: 4 FSFFKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCNDKTKYPHLTSVRNIFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSR 91
G+N+RY L ++ ++T L+ DA R + D R
Sbjct: 64 GSNVRYVYLQKNM-VDTNLLQDAARREAMSDKR 95
>gi|336363219|gb|EGN91635.1| hypothetical protein SERLA73DRAFT_192176 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384161|gb|EGO25309.1| hypothetical protein SERLADRAFT_465253 [Serpula lacrymans var.
lacrymans S7.9]
Length = 127
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 15/125 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ +T+ELK G G + + +N LK + +T + + LD + +RG+
Sbjct: 10 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVYIRGS 69
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+R++I+PD ++ +AP K ++ RG G G ARGR R R RGRG
Sbjct: 70 MVRFFIVPD-------MLQNAPMFKRVGPNAMRGRGIGTARGRAT-IMRANAR--RGRGV 119
Query: 120 PRGRG 124
P RG
Sbjct: 120 PAARG 124
>gi|310799322|gb|EFQ34215.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 115
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 10/107 (9%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+E+ +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 18 HIVTLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD 77
Query: 70 SLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRG-GRGGGRGGR 115
++ +AP + + + RG G G ARGR R GRGGR
Sbjct: 78 -------MLRNAPMFRSR--NVRGRGVGMARGRATVSRARASGRGGR 115
>gi|327305527|ref|XP_003237455.1| small nuclear ribonucleoprotein LSM2 [Trichophyton rubrum CBS
118892]
gi|326460453|gb|EGD85906.1| small nuclear ribonucleoprotein LSM2 [Trichophyton rubrum CBS
118892]
gi|326476056|gb|EGE00066.1| small nuclear ribonucleoprotein LSM2 [Trichophyton tonsurans CBS
112818]
gi|326484026|gb|EGE08036.1| small nuclear ribonucleoprotein LSM2 [Trichophyton equinum CBS
127.97]
Length = 98
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L++ TVTIELKN ++ GT++ VD +N L +++ + P +++ ++ +R
Sbjct: 4 FSFFKTLTNRTVTIELKNDIRIRGTLKSVDQYLNVKLDDIEVLDLNEYPHLSSVSNVFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRG 93
G+ +RY +LP S ++T L++DA R + + +
Sbjct: 64 GSVVRYIVLPQS-EVDTGLLEDATRREAANQANKA 97
>gi|407923942|gb|EKG17004.1| hypothetical protein MPH_05830 [Macrophomina phaseolina MS6]
Length = 114
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 13/117 (11%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ L + + VT+EL G G + + MN LK + +T + + LD + +RG+
Sbjct: 9 IKLLNEATGHVVTLELTTGHVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGR 115
++R++I+PD ++ +AP RS+G RG G G ARGR G RGGR
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSRGT----RGRGVGLARGRATVNRARGARGGR 114
>gi|402224280|gb|EJU04343.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 127
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 15/122 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ +T+ELK G G + + ++N L+ + +T + + LDS+ +RG+
Sbjct: 9 IKLLHESLGHVITVELKTGQTYRGKLADAEDSLNISLRDITVTGRDGRVSQLDSVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+R++I+PD ++ +AP K ++ +G G G ARGR R R RGRG
Sbjct: 69 MVRFFIVPD-------MLQNAPMFKRVGPNAMKGRGIGTARGRAT-IMRANAR--RGRGA 118
Query: 120 PR 121
P+
Sbjct: 119 PQ 120
>gi|315046638|ref|XP_003172694.1| small nuclear ribonucleoprotein LSM2 [Arthroderma gypseum CBS
118893]
gi|311343080|gb|EFR02283.1| small nuclear ribonucleoprotein LSM2 [Arthroderma gypseum CBS
118893]
Length = 98
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L++ TVTIELKN ++ GT++ VD +N L +++ + P +++ ++ +R
Sbjct: 4 FSFFKTLTNRTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLNEYPHLSSVSNVFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRG 93
G+ +RY +LP S ++T L++DA R + + +
Sbjct: 64 GSVVRYIVLPQS-EVDTGLLEDATRREAANQANKA 97
>gi|320591852|gb|EFX04291.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 113
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLRGN 60
F L TVT+ELKN Q+ GT++ VD +N L + + + K P + + ++ +RG+
Sbjct: 18 FFKTLIDTTVTVELKNDIQIRGTLKSVDQYLNIKLDDITVVEEIKYPHMSAVKNVFIRGS 77
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGA 96
+RY LP + ++ L++DA R + ++ + GA
Sbjct: 78 VVRYVHLP-AAAVDVSLLEDATRREAANNAPKTAGA 112
>gi|449455595|ref|XP_004145538.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis
sativus]
Length = 132
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE V++ELK+G G++ + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSR-RGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+ + ++PD ++ +AP K + D+R +G GA GRG GRG
Sbjct: 69 KVSFMVIPD-------MLKNAPMFK-RLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
Query: 120 PRGRGGPP 127
GRG PP
Sbjct: 121 APGRGAPP 128
>gi|255539216|ref|XP_002510673.1| small nuclear ribonucleoprotein, putative [Ricinus communis]
gi|223551374|gb|EEF52860.1| small nuclear ribonucleoprotein, putative [Ricinus communis]
Length = 131
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G G++ + N L+++ T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHIVTVELKSGELYRGSMVECEDNWNCQLESITYTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSR-RGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+R+ ++PD ++ +AP K + D+R +G A GRG GR G
Sbjct: 69 KVRFMVIPD-------MLKNAPMFK-RLDARIKGKSASLGVGRGRSVAMRAKAQAAGRAG 120
Query: 120 P-RGRGGPPRR 129
P RG P RR
Sbjct: 121 PGRGTAPPVRR 131
>gi|167524150|ref|XP_001746411.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775173|gb|EDQ88798.1| predicted protein [Monosiga brevicollis MX1]
Length = 325
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 13/97 (13%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VTIELKNG G + + MN+ L+ V T + + ++S+ +RG+
Sbjct: 179 IKIMHEGEGHVVTIELKNGEIYRGKLVEAEDNMNSQLRDVTFTARDGQVAHVESVYIRGS 238
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAG 97
IR+++LPD ++ +AP KR S +G AG
Sbjct: 239 KIRFFVLPD-------MLKNAP--MFKRASAKGMTAG 266
>gi|303388061|ref|XP_003072265.1| small nuclear Sm-like ribonucleoprotein [Encephalitozoon
intestinalis ATCC 50506]
gi|303301404|gb|ADM10905.1| small nuclear Sm-like ribonucleoprotein [Encephalitozoon
intestinalis ATCC 50506]
Length = 99
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ FL K +E V IE K G +V G + +D MN V+M + + + ++RG+
Sbjct: 4 IRFLRKCKNEKVRIETKEGRKVEGKMVSIDKTMN-----VEMVDAIVDELPVSTYTVRGS 58
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK 87
+IRY + D + + LLIDD PR+K K
Sbjct: 59 SIRYIMFRDDIDFKPLLIDDRPRNKIK 85
>gi|154299390|ref|XP_001550114.1| hypothetical protein BC1G_10957 [Botryotinia fuckeliana B05.10]
Length = 117
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+E+ G G + G + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 18 HVVTLEITTGQVYRGKLLGAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD 77
Query: 70 SLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRG-GRGGGRGGRGRGGPRG 122
++ +AP + + + RG G G ARGR R GRG PRG
Sbjct: 78 -------MLRNAPMFRSR--NTRGRGVGLARGRATVSRARAS-----GRGAPRG 117
>gi|239613701|gb|EEQ90688.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
ER-3]
Length = 123
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+E+ +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 21 HVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD 80
Query: 70 SLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRG 103
L + +AP RS+G+ RG G G ARGR
Sbjct: 81 MLRYGINITPNAPMFRSRGQ----RGRGVGLARGRA 112
>gi|296805700|ref|XP_002843674.1| small nuclear ribonucleoprotein LSM2 [Arthroderma otae CBS
113480]
gi|238844976|gb|EEQ34638.1| small nuclear ribonucleoprotein LSM2 [Arthroderma otae CBS
113480]
Length = 98
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L++ TVTIELKN ++ GT++ VD +N L +++ + P +++ ++ +R
Sbjct: 4 FSFFKTLTNRTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLNEYPHLSSVRNVFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRG 93
G+ +RY +LP S ++T L++DA R + + +
Sbjct: 64 GSVVRYIVLPQS-EVDTGLLEDATRREAANQANKA 97
>gi|169846820|ref|XP_001830124.1| small nuclear ribonucleoprotein Sm D3 [Coprinopsis cinerea
okayama7#130]
gi|116508894|gb|EAU91789.1| small nuclear ribonucleoprotein Sm D3 [Coprinopsis cinerea
okayama7#130]
Length = 126
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 16/121 (13%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ +T+ELK G G + + +N LK + +T + + LD + +RG+
Sbjct: 10 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVYIRGS 69
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRG----GRGGRGGGRGGR 115
IR++I+PD ++ +AP K ++ RG G G ARGR R GRG R
Sbjct: 70 MIRFFIVPD-------MLQNAPMFKRVGPNAMRGRGIGTARGRATIMRARRGRGVAPAPR 122
Query: 116 G 116
G
Sbjct: 123 G 123
>gi|409080651|gb|EKM81011.1| hypothetical protein AGABI1DRAFT_112714 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197565|gb|EKV47492.1| hypothetical protein AGABI2DRAFT_192678 [Agaricus bisporus var.
bisporus H97]
Length = 128
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ +T+ELK G G + + +N LK + +T + + LD + +RG+
Sbjct: 10 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVYIRGS 69
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRGGRGRG- 118
IR++I+PD ++ +AP K ++ RG G G ARGR R R GRG
Sbjct: 70 MIRFFIVPD-------MLQNAPMFKRVGPNAMRGRGIGTARGRAT-IMRANARRGRGAVP 121
Query: 119 GPRG 122
PRG
Sbjct: 122 APRG 125
>gi|302811572|ref|XP_002987475.1| hypothetical protein SELMODRAFT_183167 [Selaginella moellendorffii]
gi|300144881|gb|EFJ11562.1| hypothetical protein SELMODRAFT_183167 [Selaginella moellendorffii]
Length = 135
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 20/136 (14%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G GT+ + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAEGHVVTVELKSGELYRGTLIECEDNWNCQLENITYTAKDGKVSQLEHVFVRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGA---RGRGGRGGRGGGRGGRGR 117
+R+ I+PD ++ +AP K +G G+ G RGR R R GR
Sbjct: 69 KVRFMIIPD-------MLKNAPMFKRLEAKIKGKGSAGIGVGRGR-AVSMRAKARAA-GR 119
Query: 118 GGPR----GRGGPPRR 129
G P+ GR P RR
Sbjct: 120 GVPQPVPGGRAMPVRR 135
>gi|224083270|ref|XP_002306975.1| predicted protein [Populus trichocarpa]
gi|222856424|gb|EEE93971.1| predicted protein [Populus trichocarpa]
Length = 132
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G G + + N L+++ T K + + L+ + +RG+
Sbjct: 9 VKLLHEASGHIVTVELKSGELYRGGMVECEDNWNCQLESITYTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSR-RGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+R+ ++PD ++ +AP K + D+R +G A GRG GRG
Sbjct: 69 KVRFMVIPD-------MLKNAPMFK-RLDARIKGKSASLGVGRGRSVAMRSKAQAAGRGA 120
Query: 120 PRGRGGPP 127
P GRG P
Sbjct: 121 PPGRGVVP 128
>gi|443711594|gb|ELU05300.1| hypothetical protein CAPTEDRAFT_181174 [Capitella teleta]
Length = 144
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 13 TIELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRGNNIRYYILPDSL 71
TIEL+N + GTI VD+ MN L T+ T K + + LD + ++G NIRY +PD +
Sbjct: 29 TIELRNDDSILGTIDHVDIQMNVFLSTITFTRAKTGQQSQLDKLYVQGKNIRYVHIPDDM 88
Query: 72 PLETLL---IDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGG 111
+ + + A + +D R+ A+ R +
Sbjct: 89 DMMACIEGQVSLAKTIRDHKDKRKPKARSRAQCRKDVDAKVAA 131
>gi|302909812|ref|XP_003050156.1| hypothetical protein NECHADRAFT_84991 [Nectria haematococca mpVI
77-13-4]
gi|256731093|gb|EEU44443.1| hypothetical protein NECHADRAFT_84991 [Nectria haematococca mpVI
77-13-4]
Length = 384
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 10/103 (9%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
VT+E+ +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 290 VTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD-- 347
Query: 72 PLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRG-GRGGGRG 113
++ +AP + + + RG G G ARGR R GGRG
Sbjct: 348 -----MLRNAPMFRSR--NVRGRGVGLARGRATVSRARAGGRG 383
>gi|392577030|gb|EIW70160.1| hypothetical protein TREMEDRAFT_38820 [Tremella mesenterica DSM
1558]
Length = 124
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 12/104 (11%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ VT+ELK G G + + +N LK + +T + + +D + +RG+
Sbjct: 8 VKLLHESLGHVVTVELKTGEMYRGKLMEAEDNLNIALKDITVTARDGRVSQMDMVYIRGS 67
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRG 103
IR+ I+PD L+ AP K ++ RG G G ARGR
Sbjct: 68 MIRFVIVPD-------LLSSAPMFKRVGPNAMRGRGIGAARGRA 104
>gi|388854781|emb|CCF51674.1| related to small nuclear ribonucleoprotein sm d3 [Ustilago hordei]
Length = 134
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 5 MKLSHETV----TIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE V T+ELK G GT+ + + N +K V T + + L++I +RGN
Sbjct: 8 VKLIHEAVGHVITVELKGGACYRGTLYDAEDSFNVAMKDVTATAPDGKQSHLENIYIRGN 67
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
+R+ I+PD L + P ++ +G G G ARGR
Sbjct: 68 MLRFIIVPDMLQQAPMFKRIGP------NAMKGRGIGSARGRA 104
>gi|396080757|gb|AFN82378.1| small nuclear Sm-like ribonucleoprotein [Encephalitozoon romaleae
SJ-2008]
Length = 99
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ FL K E V +E K G ++ G I VD MN ++ V G +T ++RG+
Sbjct: 4 IRFLKKCKGEKVKVETKEGRKIEGRITSVDKTMNVEMEDA--VVDGVPASTY---TVRGS 58
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK 87
+IRY + D + + LL+DD PR++ K
Sbjct: 59 SIRYIMFRDDIDFKPLLVDDRPRNRTK 85
>gi|353236668|emb|CCA68658.1| related to small nuclear ribonucleoprotein sm d3 [Piriformospora
indica DSM 11827]
Length = 129
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE +T+ELK G G + + ++N LK + +T + + LD + +RG+
Sbjct: 9 VKLLHEALGHVITVELKTGQLYRGKLAEAEDSLNISLKDITVTGRDGRISQLDQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRG 103
IR++I+PD ++ +AP K ++ RG G G ARGR
Sbjct: 69 MIRFFIVPD-------MLQNAPMFKRVGPNAMRGRGIGTARGRA 105
>gi|392569479|gb|EIW62652.1| small nuclear ribonucleo protein Sm D3 [Trametes versicolor
FP-101664 SS1]
Length = 131
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ +T+ELK G G + + +N LK + +T + + LD + +RG+
Sbjct: 10 VKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKDITVTQRDGRVSQLDQVYIRGS 69
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRGG-RGGRGGGRGGRGRG 118
+R++I+PD ++ +AP K ++ +G G G ARGR RGRG
Sbjct: 70 MVRFFIVPD-------MLQNAPMFKRVGPNAMKGRGIGTARGRATIMRALTIFAARRGRG 122
Query: 119 GPRGRG 124
P RG
Sbjct: 123 VPAARG 128
>gi|170087186|ref|XP_001874816.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650016|gb|EDR14257.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 127
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 13/121 (10%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ +T+ELK G G + + +N LK + +T + + LD + +RG+
Sbjct: 9 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+R++I+PD ++ +AP K ++ RG G G ARGR R R GRG
Sbjct: 69 MVRFFIVPD-------MLQNAPMFKRVGPNAMRGRGIGTARGRAT-IMRANARRGRGVVP 120
Query: 120 P 120
P
Sbjct: 121 P 121
>gi|19112491|ref|NP_595699.1| Sm snRNP core protein Smd3 [Schizosaccharomyces pombe 972h-]
gi|12230614|sp|Q9UUC6.1|SMD3_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|5689996|emb|CAB52041.1| Sm snRNP core protein Smd3 [Schizosaccharomyces pombe]
Length = 97
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 1 MNFLMKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSIS 56
M+ +KL HET VT+EL+NG+ G + + MN ++ + +T + + LD +
Sbjct: 1 MSLCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVY 60
Query: 57 LRGNNIRYYILPDSL 71
+RG++IR+ I+PD L
Sbjct: 61 IRGSHIRFLIVPDML 75
>gi|393244822|gb|EJD52333.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 126
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE +T+ELK G G + + ++N LK + +T + + LD + +RG+
Sbjct: 9 VKLLHEAMGHIITVELKTGQLYRGKLLEAEDSLNISLKDITVTGRDGRVSQLDQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRG 103
IR++I+PD ++ +AP K ++ RG G G ARGR
Sbjct: 69 MIRFFIVPD-------MLQNAPMFKRVGPNAMRGRGIGTARGRA 105
>gi|401825101|ref|XP_003886646.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
gi|395459791|gb|AFM97665.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
Length = 99
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ FL K E V +E K G +V G I VD MN ++ V G EP + ++RG+
Sbjct: 4 IRFLRKCKGEKVNVETKEGRKVGGKIVSVDKTMNVEIEDA--MVDG-EPAG--TYTVRGS 58
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK 87
+IRY + D + + LL+DD PRS+ K
Sbjct: 59 SIRYIMFRDDICFKPLLVDDRPRSRPK 85
>gi|195656155|gb|ACG47545.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK G G++ + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGGP 120
+R+ I+PD ++ +AP K RG G+ GR GR R GR
Sbjct: 69 RVRFMIIPD-------MLKNAPMFKRLEARIRGKGSAIGVGR-GRAVAMRARAGRLSFLD 120
Query: 121 RGRGGPPRR 129
GR PPR+
Sbjct: 121 GGR-APPRK 128
>gi|224065689|ref|XP_002301922.1| predicted protein [Populus trichocarpa]
gi|222843648|gb|EEE81195.1| predicted protein [Populus trichocarpa]
Length = 132
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G G++ + N L+++ T K + + L+ + +RG+
Sbjct: 9 VKLLHEASGHIVTVELKSGELYRGSMVECEDNWNCQLESITYTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSR-RGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+R+ ++PD ++ +AP K + D+R +G A GRG GRG
Sbjct: 69 KVRFMVIPD-------MLKNAPMFK-RLDARIKGKSASLGVGRGRSVAMRSKAQATGRGA 120
Query: 120 PRGRGGPP 127
GRG P
Sbjct: 121 APGRGVVP 128
>gi|189199034|ref|XP_001935854.1| small nuclear ribonucleoprotein Sm D3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330913493|ref|XP_003296291.1| hypothetical protein PTT_05811 [Pyrenophora teres f. teres 0-1]
gi|187982953|gb|EDU48441.1| small nuclear ribonucleoprotein Sm D3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311331686|gb|EFQ95612.1| hypothetical protein PTT_05811 [Pyrenophora teres f. teres 0-1]
Length = 118
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 17/121 (14%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ L + + VT+E+ +G G + + MN LK + +T + + L+ + +RG+
Sbjct: 9 IKLLNEAAGHIVTLEITSGEVYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRG----GRGGRGGGRGG 114
++RY+I+PD ++ +AP RS+G RG G G ARGR R GG GG
Sbjct: 69 HVRYFIVPD-------MLRNAPMFRSRGT----RGRGVGLARGRATVNRARASTRGGAGG 117
Query: 115 R 115
R
Sbjct: 118 R 118
>gi|398407783|ref|XP_003855357.1| hypothetical protein MYCGRDRAFT_36580 [Zymoseptoria tritici IPO323]
gi|339475241|gb|EGP90333.1| hypothetical protein MYCGRDRAFT_36580 [Zymoseptoria tritici IPO323]
Length = 119
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 19/124 (15%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ L + + VT+E+ +G G + + MN L+ + +T + T LD + +RG+
Sbjct: 9 IKLLNEATGHQVTVEITSGQTYRGKLIEAEDNMNVQLENINVTQRDGRVTHLDRVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRG 118
++R +I+PD ++ +AP RSKG RG G G ARGR RG G
Sbjct: 69 HVRLFIVPD-------MLRNAPMFRSKGV----RGRGVGLARGRATVN------RARGSG 111
Query: 119 GPRG 122
GPRG
Sbjct: 112 GPRG 115
>gi|225714524|gb|ACO13108.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]
gi|290462385|gb|ADD24240.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]
gi|290563060|gb|ADD38924.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]
Length = 138
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 18/127 (14%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E NG G + + MN + +V +T + + L++I +RG+
Sbjct: 7 IKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGGP 120
IR+ ILPD ++ +AP K G G G A GRG R RG
Sbjct: 67 KIRFMILPD-------MLKNAPMFKNM-----GRGRGSAPASAGRGKSAILREQAARG-- 112
Query: 121 RGRGGPP 127
RGR GPP
Sbjct: 113 RGRAGPP 119
>gi|347838545|emb|CCD53117.1| hypothetical protein [Botryotinia fuckeliana]
Length = 565
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 8 SHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLRGNNIRYY 65
S VT+ELKN Q+ G ++ VD +N L +++ + K P +++ ++ +RG+ +RY
Sbjct: 478 SDHEVTVELKNDIQIKGILKSVDQYLNIKLDDIQVVEELKYPHLSSVKNVFIRGSVVRYV 537
Query: 66 ILPDSLPLETLLIDDAPRSKGKRDSRRG 93
LP + ++T L++DA R + + + +G
Sbjct: 538 HLPGGV-IDTALLEDATRREAAQQATKG 564
>gi|268534544|ref|XP_002632403.1| C. briggsae CBR-SNR-1 protein [Caenorhabditis briggsae]
Length = 136
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 19/136 (13%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE TVT+E G G + + MN L +T + L+++ +RGN
Sbjct: 8 IKILHEAEGHTVTLETVTGEVYRGKLIEAEDNMNCQLSETIVTFRDGRSHQLENVFIRGN 67
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGG---GAGGARGRGGRGGRGGGRGGRGR 117
IR+ ILPD ++ +AP K +++G G GG R GRG R GR
Sbjct: 68 KIRFMILPD-------MLKNAPMFKNIGRAQKGAIGMGLGGLDQR-GRGRGTAFRRPMGR 119
Query: 118 GGPRGR----GGPPRR 129
GGPRG G PP R
Sbjct: 120 GGPRGMSRPGGAPPFR 135
>gi|154308998|ref|XP_001553834.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 157
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L VT+ELKN Q+ G ++ VD +N L +++ + K P +++ ++ +R
Sbjct: 63 FSFFKTLVDHEVTVELKNDIQIKGILKSVDQYLNIKLDDIQVVEELKYPHLSSVKNVFIR 122
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRG 93
G+ +RY LP + ++T L++DA R + + + +G
Sbjct: 123 GSVVRYVHLPGGV-IDTALLEDATRREAAQQATKG 156
>gi|452848080|gb|EME50012.1| hypothetical protein DOTSEDRAFT_68763 [Dothistroma septosporum
NZE10]
Length = 101
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 11/106 (10%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L + VT+ELKN + GT++ VD +N L V + + K P +++ ++ +R
Sbjct: 4 FSFFKTLVNHEVTVELKNDISIRGTLKSVDQYLNIKLDDVSVVEELKYPHLSSVKNVFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
G+ +RY LP ++ ++T L++DA +RR A+ + G
Sbjct: 64 GSVVRYVHLP-AVAVDTPLLEDA--------TRREASQTAAKAKQG 100
>gi|225683183|gb|EEH21467.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 118
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L++ TVT+ELKN ++ GT++ VD +N L +++ + P +++ +I +R
Sbjct: 4 FSFFKTLTNHTVTVELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDQYPHLSSVKNIFVR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGR 115
G+ +RY +LP + ++ L++DA R +G +G A R R R R R
Sbjct: 64 GSVVRYVVLPQA-EVDRGLLEDATR-RGI----QGISAYSYHLRVHRSNRSPSRLVR 114
>gi|393238251|gb|EJD45789.1| U6 snRNA-associated Sm-like protein LSm2 [Auricularia delicata
TFB-10046 SS5]
Length = 97
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 7 LSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP-TTLDSISLRGNNIRYY 65
L+ +TVT+ELKN + G ++ VD +N L ++K+ + + P L + +RG+ +RY
Sbjct: 12 LTDQTVTVELKNDLCITGVLKSVDQFLNIRLDSIKVLDEARHPHMALKNCFIRGSVVRYV 71
Query: 66 ILPDSLPLETLLIDDAPRSKGKRDSRR 92
LP + ++T L++DA R + ++R
Sbjct: 72 QLPAN-AVDTQLLEDATRREAANQAKR 97
>gi|341886102|gb|EGT42037.1| CBN-SNR-1 protein [Caenorhabditis brenneri]
Length = 136
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 19/136 (13%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE TVT+E G G + + MN L +T + L+++ +RGN
Sbjct: 8 IKILHEAEGHTVTLETVTGEVYRGKLIEAEDNMNCQLAETIVTFRDGRSHQLENVFIRGN 67
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGG---GAGGARGRGGRGGRGGGRGGRGR 117
IR+ ILPD ++ +AP K +++G G GG R GRG R GR
Sbjct: 68 KIRFMILPD-------MLKNAPMFKNIGRAQKGAIGMGLGGLDQR-GRGRGTAFRRPMGR 119
Query: 118 GGPRGR----GGPPRR 129
GGPRG G PP R
Sbjct: 120 GGPRGMSRPGGAPPFR 135
>gi|406866049|gb|EKD19089.1| small nuclear ribonucleoprotein LSM2 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 104
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLRG 59
+F L VT+ELKN Q+ GT++ VD +N L + + K P +++ ++ +RG
Sbjct: 10 DFFKTLVDHEVTVELKNDIQIRGTLKSVDQYLNIKLDNISVVEDLKYPHLSSVKNVFIRG 69
Query: 60 NNIRYYILPDSLPLETLLIDDAPR 83
+ +RY LP S ++T L++DA R
Sbjct: 70 SVVRYVHLPGS-AVDTALLEDATR 92
>gi|347841024|emb|CCD55596.1| hypothetical protein [Botryotinia fuckeliana]
Length = 117
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 17/122 (13%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL +E VT+E+ G G + + MN LK + +T + + LD + +RG+
Sbjct: 9 IKLLNEAQGHVVTLEITTGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGGP 120
++R++I+PD ++ +AP + + + RG G G ARGR GRG P
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSR--NTRGRGVGLARGRATVSRARAS----GRGAP 115
Query: 121 RG 122
RG
Sbjct: 116 RG 117
>gi|393238250|gb|EJD45788.1| U6 snRNA-associated Sm-like protein LSm2, partial [Auricularia
delicata TFB-10046 SS5]
Length = 101
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 7 LSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP-TTLDSISLRGNNIRYY 65
L+ +TVT+ELKN + G ++ VD +N L ++K+ + + P L + +RG+ +RY
Sbjct: 16 LTDQTVTVELKNDLCITGVLKSVDQFLNIRLDSIKVLDEARHPHMALKNCFIRGSVVRYV 75
Query: 66 ILPDSLPLETLLIDDAPRSKGKRDSRR 92
LP + ++T L++DA R + ++R
Sbjct: 76 QLPAN-AVDTQLLEDATRREAANQAKR 101
>gi|302679434|ref|XP_003029399.1| hypothetical protein SCHCODRAFT_16877 [Schizophyllum commune H4-8]
gi|300103089|gb|EFI94496.1| hypothetical protein SCHCODRAFT_16877 [Schizophyllum commune H4-8]
Length = 125
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 16/114 (14%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ +T+ELK G G + + +N LK + +T + + LD + +RG+
Sbjct: 9 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKEITVTGRDGRVSQLDQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK-RDSRRGGGAGGARGRG----GRGGRG 109
IR++I+PD ++ +AP K ++ +G G G ARGR R GRG
Sbjct: 69 MIRFFIVPD-------MLQNAPMFKRVGPNAMKGRGIGTARGRATIMRARRGRG 115
>gi|255930807|ref|XP_002556960.1| Pc12g00570 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581579|emb|CAP79684.1| Pc12g00570 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 99
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L+++TVTIELKN ++ G ++ VD +N L +++ K P +++ ++ +R
Sbjct: 4 FSFFKTLTNQTVTIELKNDIRIRGILKSVDQYLNIKLDDIEVLDLAKYPHLSSVKNMFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGAR 100
G+ +RY +LP S ++ L++DA R + AG AR
Sbjct: 64 GSVVRYVMLPRS-EVDVGLLEDATRR-----AEAANQAGKAR 99
>gi|345560308|gb|EGX43433.1| hypothetical protein AOL_s00215g169 [Arthrobotrys oligospora ATCC
24927]
Length = 123
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+EL +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 17 HVVTLELTSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD 76
Query: 70 SLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
++ +AP + + + RG G G ARGR
Sbjct: 77 -------MLRNAPMFRSR--AVRGRGVGMARGRA 101
>gi|400602727|gb|EJP70329.1| DOM34-interacting protein [Beauveria bassiana ARSEF 2860]
Length = 98
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L + VT+ELKN Q+ GT++ VD +N L + + + K P +++ ++ +R
Sbjct: 4 FSFFKTLIEQEVTVELKNDIQLRGTLKSVDQYLNIKLDDISVMEELKYPHLSSVKNVFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKG 86
G+ +RY LP S ++T L++DA R +
Sbjct: 64 GSVVRYVHLPAS-SVDTQLLEDATRREA 90
>gi|169614183|ref|XP_001800508.1| hypothetical protein SNOG_10228 [Phaeosphaeria nodorum SN15]
gi|160707292|gb|EAT82563.2| hypothetical protein SNOG_10228 [Phaeosphaeria nodorum SN15]
Length = 117
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 18/120 (15%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ L + + +T+E+ +G G + + MN LK + +T + + L+ + +RG+
Sbjct: 9 IKLLNEAAGHIITLEITSGEVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRGG-----RGGRGGGRG 113
++RY+I+PD ++ +AP RS+G RG G G ARGR RGGGRG
Sbjct: 69 HVRYFIVPD-------MLRNAPMFRSRGT----RGRGVGLARGRATVNRARASTRGGGRG 117
>gi|58264244|ref|XP_569278.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|134107716|ref|XP_777469.1| hypothetical protein CNBB0430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|321248376|ref|XP_003191109.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|50260161|gb|EAL22822.1| hypothetical protein CNBB0430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223928|gb|AAW41971.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
gi|317457576|gb|ADV19322.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
gi|405118776|gb|AFR93550.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii H99]
Length = 124
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ +T+ELK G G + + +N L+ + +T + + L+ + +RG+
Sbjct: 8 VKLLHESLGHIITVELKTGEMYRGKLMEAEDTLNIALREITVTARDGRVSQLEQVYIRGS 67
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
IR+ I+PD L + P ++ RG G G ARGR
Sbjct: 68 MIRFIIVPDLLAQAPMFKRIGP------NAMRGRGIGAARGRA 104
>gi|340519305|gb|EGR49544.1| predicted protein [Trichoderma reesei QM6a]
gi|358388432|gb|EHK26025.1| hypothetical protein TRIVIDRAFT_27430, partial [Trichoderma virens
Gv29-8]
gi|358392460|gb|EHK41864.1| hypothetical protein TRIATDRAFT_134655, partial [Trichoderma
atroviride IMI 206040]
Length = 114
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL +E +T+E+ +G G + + MN LK + +T + + LD + +RG+
Sbjct: 9 IKLLNEAQGHIITLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG--GRGGRGGGRG 113
++R++I+PD ++ +AP + + + RG G G ARGR R GGRG
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSR--NVRGRGVGLARGRATVSRARASGGRG 114
>gi|17542052|ref|NP_503027.1| Protein SNR-1 [Caenorhabditis elegans]
gi|21542463|sp|Q17348.2|SMD3_CAEEL RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|5832794|emb|CAB55132.1| Protein SNR-1 [Caenorhabditis elegans]
Length = 136
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT+E G G + + MN L +T + LD++ +RGN
Sbjct: 8 IKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGN 67
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGG---GAGGARGRGGRGGRGGGRGGRGR 117
IR+ ILPD ++ +AP K +++G G GG R GRG R GR
Sbjct: 68 KIRFMILPD-------MLKNAPMFKNIGRAQKGAIGMGLGGLDQR-GRGRGTAFRRPMGR 119
Query: 118 GGPRGRGGP 126
GGPRG P
Sbjct: 120 GGPRGMSRP 128
>gi|255948872|ref|XP_002565203.1| Pc22g12590 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592220|emb|CAP98547.1| Pc22g12590 [Penicillium chrysogenum Wisconsin 54-1255]
gi|425774880|gb|EKV13173.1| Small nuclear ribonucleoprotein SmD3, putative [Penicillium
digitatum PHI26]
gi|425780976|gb|EKV18959.1| Small nuclear ribonucleoprotein SmD3, putative [Penicillium
digitatum Pd1]
Length = 117
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 17/108 (15%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VTIE+ +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 21 HVVTIEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD 80
Query: 70 SLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRG----GRGGRGGG 111
++ +AP R++G+ RG G G ARG+ RG RG G
Sbjct: 81 -------MLRNAPMFRTRGQ----RGRGVGLARGKATVQRARGQRGRG 117
>gi|258575267|ref|XP_002541815.1| SNP3 protein [Uncinocarpus reesii 1704]
gi|237902081|gb|EEP76482.1| SNP3 protein [Uncinocarpus reesii 1704]
Length = 1064
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLRG 59
NF L++ TV IELKN ++ GT++ VD +N L +++ K P +++ +I +RG
Sbjct: 921 NFFKTLTNHTVIIELKNDIRIRGTLKSVDQYLNVKLDDIEVIDLDKYPHLSSVKNIFIRG 980
Query: 60 NNIRYYILPDSLPLETLLIDDAPR 83
+ +RY +LP ++ L++DA R
Sbjct: 981 SVVRYIVLPQE-AVDRGLLEDATR 1003
>gi|295658451|ref|XP_002789786.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|225682914|gb|EEH21198.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
gi|226282930|gb|EEH38496.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226290365|gb|EEH45849.1| small nuclear ribonucleoprotein Sm D3 [Paracoccidioides
brasiliensis Pb18]
gi|327350126|gb|EGE78983.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
ATCC 18188]
Length = 116
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+E+ +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 21 HVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD 80
Query: 70 SLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRG 103
++ +AP RS+G+ RG G G ARGR
Sbjct: 81 -------MLRNAPMFRSRGQ----RGRGVGLARGRA 105
>gi|367024463|ref|XP_003661516.1| hypothetical protein MYCTH_2301009 [Myceliophthora thermophila ATCC
42464]
gi|347008784|gb|AEO56271.1| hypothetical protein MYCTH_2301009 [Myceliophthora thermophila ATCC
42464]
Length = 114
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+E+ +G G + + MN LK + +T + + L+ + +RG+++R++I+PD
Sbjct: 18 HIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGSHVRFFIVPD 77
Query: 70 SLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRG-GRGGGRG 113
++ +AP + + + RG G G ARGR R GGRG
Sbjct: 78 -------MLRNAPMFRSR--NVRGRGVGLARGRATVSRARAGGRG 113
>gi|336269505|ref|XP_003349513.1| hypothetical protein SMAC_03101 [Sordaria macrospora k-hell]
gi|380093412|emb|CCC09070.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 116
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 14/115 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL +E VT+E+ +G G + + MN LK + +T + + L+ + +RG+
Sbjct: 9 IKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRG-GRGGGRGG 114
++R++I+PD ++ +AP + + + RG G G ARGR R GGRG
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSR--NVRGRGVGLARGRATVSRARAGGRGS 114
>gi|367037323|ref|XP_003649042.1| hypothetical protein THITE_57872, partial [Thielavia terrestris
NRRL 8126]
gi|346996303|gb|AEO62706.1| hypothetical protein THITE_57872, partial [Thielavia terrestris
NRRL 8126]
Length = 114
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 14/115 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL +E VT+E+ +G G + + MN LK + +T + + L+ + +RG+
Sbjct: 9 IKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRG-GRGGGRGG 114
++R++I+PD ++ +AP + + + RG G G ARGR R GRGG
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSR--NVRGRGVGLARGRATVSRARASGRGG 114
>gi|154286938|ref|XP_001544264.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407905|gb|EDN03446.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|225555382|gb|EEH03674.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces capsulatus
G186AR]
gi|240273870|gb|EER37389.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325094696|gb|EGC48006.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces capsulatus H88]
Length = 116
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+E+ +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 21 HVVTLEILSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD 80
Query: 70 SLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRG 103
++ +AP RS+G+ RG G G ARGR
Sbjct: 81 -------MLRNAPMFRSRGQ----RGRGVGLARGRA 105
>gi|340904841|gb|EGS17209.1| small nuclear ribonucleoprotein smD3-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 114
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
VT+EL G G + + MN LK + +T + + L+ I +RG+++R++I+PD
Sbjct: 20 VTLELTTGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQIYIRGSHVRFFIVPD-- 77
Query: 72 PLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRG-GRGGGRG 113
++ +AP + + + RG G G ARGR R GRG
Sbjct: 78 -----MLRNAPMFRSR--NVRGRGVGLARGRATVSRARASGRG 113
>gi|71023653|ref|XP_762056.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
gi|46101621|gb|EAK86854.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
Length = 850
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 5 MKLSHETV----TIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE V T+ELK G GT+ + N +K + +T + + L+++ +RGN
Sbjct: 8 VKLIHEAVGHVITVELKGGAAYRGTLYDAEDNFNIAMKDITVTAPDGKQSHLENVYIRGN 67
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
+R+ I+PD L + P ++ +G G G ARGR
Sbjct: 68 MLRFIIVPDMLQQAPMFKRIGP------NAMKGRGIGSARGRA 104
>gi|121716437|ref|XP_001275808.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
clavatus NRRL 1]
gi|119403965|gb|EAW14382.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
clavatus NRRL 1]
Length = 98
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 58/102 (56%), Gaps = 9/102 (8%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L+++TVTIELKN ++ GT++ VD +N L V + K P +++ ++ +R
Sbjct: 4 FSFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNMFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGAR 100
G+ +RY +LP S ++ L++DA R + AG AR
Sbjct: 64 GSVVRYVMLPRS-EVDVGLLEDATRREA------ANQAGKAR 98
>gi|295672151|ref|XP_002796622.1| small nuclear ribonucleoprotein LSM2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226283602|gb|EEH39168.1| small nuclear ribonucleoprotein LSM2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226288343|gb|EEH43855.1| small nuclear ribonucleoprotein LSM2 [Paracoccidioides
brasiliensis Pb18]
Length = 98
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L++ TVTIELKN ++ GT++ VD +N L +++ + P +++ +I +R
Sbjct: 4 FSFFKTLTNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDQYPHLSSVKNIFVR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRG 93
G+ +RY +LP + ++ L++DA R + + +
Sbjct: 64 GSVVRYVVLPQA-EVDRGLLEDATRREAANQANKA 97
>gi|116780936|gb|ABK21888.1| unknown [Picea sitchensis]
Length = 133
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 21/129 (16%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G G + + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKSGELYRGNMIECEDNWNCQLEGITYTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGR--GGRGRG 118
+R+ ++PD ++ +AP + + D+R +G+G G G GR R R
Sbjct: 69 KVRFMVIPD-------MLRNAPMFR-RLDAR-------IKGKGSSIGVGRGRAVAMRARA 113
Query: 119 GPRGRGGPP 127
GR GPP
Sbjct: 114 QATGRAGPP 122
>gi|261203087|ref|XP_002628757.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
SLH14081]
gi|239586542|gb|EEQ69185.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
SLH14081]
gi|327349625|gb|EGE78482.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 98
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L++ TVTIELKN ++ GT++ VD +N L +++ + P +++ +I +R
Sbjct: 4 FSFFKTLTNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDQYPHLSSVKNIFVR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRG 93
G+ +RY +LP + ++ L++DA R + + +
Sbjct: 64 GSVVRYIVLPQA-EVDRGLLEDATRREAANQANKA 97
>gi|425767839|gb|EKV06392.1| hypothetical protein PDIG_77590 [Penicillium digitatum PHI26]
gi|425783770|gb|EKV21591.1| hypothetical protein PDIP_04700 [Penicillium digitatum Pd1]
Length = 121
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L+++TVTIELKN ++ G ++ VD +N L +++ K P +++ ++ +R
Sbjct: 4 FSFFKTLTNQTVTIELKNDIRIRGILKSVDQYLNIKLDDIEVLDLAKYPHLSSVKNMFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPR 83
G+ +RY +LP S ++ L++DA R
Sbjct: 64 GSVVRYVMLPRS-EVDVGLLEDATR 87
>gi|440634941|gb|ELR04860.1| small nuclear ribonucleoprotein D3 [Geomyces destructans 20631-21]
Length = 117
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 19/116 (16%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+E+ +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 18 HVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD 77
Query: 70 SLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRGGRG-GRGGGRGGRGRGGPRG 122
++ +AP RS+G +G G G ARGR R GRG PRG
Sbjct: 78 -------MLRNAPMFRSRGV----KGRGVGLARGRATVSRARAS-----GRGAPRG 117
>gi|145242038|ref|XP_001393665.1| U6 snRNA-associated Sm-like protein LSm2 [Aspergillus niger CBS
513.88]
gi|134078209|emb|CAK40288.1| unnamed protein product [Aspergillus niger]
gi|358374995|dbj|GAA91582.1| small nuclear ribonucleoprotein [Aspergillus kawachii IFO 4308]
Length = 98
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 58/102 (56%), Gaps = 9/102 (8%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L+++TVTIELKN ++ GT++ VD +N L V + K P +++ ++ +R
Sbjct: 4 FSFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNMFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGAR 100
G+ +RY +LP S ++ L++DA R + AG AR
Sbjct: 64 GSVVRYVMLPRS-EVDIGLLEDATRREA------ANQAGKAR 98
>gi|91084331|ref|XP_972583.1| PREDICTED: similar to AGAP012380-PA [Tribolium castaneum]
Length = 137
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGS 66
Query: 61 NIRYYILPDSL---PLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG----RGGRGGGRG 113
IR+ ILPD L P+ +GK R A G RGRG RGGRGG
Sbjct: 67 KIRFLILPDMLKNAPMFKKQTKAGTAGRGKSAILRAQAARG-RGRGANPAVRGGRGGAWQ 125
Query: 114 GRGRGGPRGRG 124
G+G GRG
Sbjct: 126 APGQGAAAGRG 136
>gi|451851728|gb|EMD65026.1| hypothetical protein COCSADRAFT_36375 [Cochliobolus sativus ND90Pr]
gi|451995470|gb|EMD87938.1| hypothetical protein COCHEDRAFT_1183070 [Cochliobolus
heterostrophus C5]
Length = 116
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ L + + VT+E+ +G G + + MN LK + +T + + L+ + +RG+
Sbjct: 9 IKLLNEAAGHIVTLEITSGEVYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRGGRG-GRGGGRGG 114
++RY+I+PD ++ +AP RS+G RG G G ARGR R RGG
Sbjct: 69 HVRYFIVPD-------MLRNAPMFRSRGT----RGRGVGLARGRATVNRARASTRGG 114
>gi|115492327|ref|XP_001210791.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus terreus NIH2624]
gi|169771623|ref|XP_001820281.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus oryzae RIB40]
gi|238485796|ref|XP_002374136.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus flavus
NRRL3357]
gi|83768140|dbj|BAE58279.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|114197651|gb|EAU39351.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus terreus NIH2624]
gi|220699015|gb|EED55354.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus flavus
NRRL3357]
gi|391871729|gb|EIT80886.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus oryzae 3.042]
Length = 116
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+E+ +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 21 HVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD 80
Query: 70 SLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRG 103
++ +AP RS+G+ RG G G ARG+
Sbjct: 81 -------MLRNAPMFRSRGQ----RGRGVGLARGKA 105
>gi|322694233|gb|EFY86068.1| small nuclear ribonucleoprotein Sm D3 [Metarhizium acridum CQMa
102]
Length = 113
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+E+ +G G + + MN LK + +T + + L+ + +RG+++R++I+PD
Sbjct: 18 HIVTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHLEQVYIRGSHVRFFIVPD 77
Query: 70 SLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRG-GRGGGR 112
++ +AP + + + RG G G ARGR R GGR
Sbjct: 78 -------MLRNAPMFRSR--NLRGRGVGLARGRATVSRARAGGR 112
>gi|302410425|ref|XP_003003046.1| small nuclear ribonucleoprotein Sm D3 [Verticillium albo-atrum
VaMs.102]
gi|261358070|gb|EEY20498.1| small nuclear ribonucleoprotein Sm D3 [Verticillium albo-atrum
VaMs.102]
Length = 154
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
+T+E+ +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 20 ITLEITSGQTYRGKLLEAEDNMNIQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD-- 77
Query: 72 PLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGGPRGRGGPPRR 129
++ +AP + + ++RG G G ARGR + R R R PP R
Sbjct: 78 -----MLRNAPMFRSR--NQRGRGVGLARGRATPSSQDCWAIARRRTRCGRRENPPLR 128
>gi|346324359|gb|EGX93956.1| small nuclear ribonucleoprotein LSM2 [Cordyceps militaris CM01]
Length = 98
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L + VT+ELKN Q+ GT++ VD +N L + + + K P +++ ++ +R
Sbjct: 4 FSFFKTLIDQEVTVELKNDIQLRGTLKSVDQYLNIKLDDISVIEELKYPHMSSVKNVFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKG 86
G+ +RY LP + ++T L++DA R +
Sbjct: 64 GSVVRYVHLP-AASVDTQLLEDATRREA 90
>gi|119174174|ref|XP_001239448.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|258569991|ref|XP_002543799.1| small nuclear ribonucleoprotein SM D3 [Uncinocarpus reesii 1704]
gi|303314089|ref|XP_003067053.1| small nuclear ribonucleoprotein Sm D3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|237904069|gb|EEP78470.1| small nuclear ribonucleoprotein SM D3 [Uncinocarpus reesii 1704]
gi|240106721|gb|EER24908.1| small nuclear ribonucleoprotein Sm D3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320037285|gb|EFW19222.1| small nuclear ribonucleoprotein Sm D3 [Coccidioides posadasii str.
Silveira]
gi|392869636|gb|EAS28151.2| small nuclear ribonucleoprotein Sm D3 [Coccidioides immitis RS]
Length = 116
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+E+ +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 21 HVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD 80
Query: 70 SLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRG 103
++ +AP R++G+ RG G G ARGR
Sbjct: 81 -------MLRNAPMFRTRGQ----RGRGVGLARGRA 105
>gi|440790083|gb|ELR11371.1| LSM domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 136
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE TVTIELK G G + + MN + ++ T + T L+ + +RG+
Sbjct: 7 IKVFHEAKGHTVTIELKTGEVYRGQLGDTEDNMNCQMANIQYTARDGRVTNLEQVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAG 97
IR+ ILPD L + + P K+ RG GAG
Sbjct: 67 KIRFMILPDMLKNAPMFRNVDP----KKAQGRGKGAG 99
>gi|170596749|ref|XP_001902882.1| hypothetical protein Bm1_57120 [Brugia malayi]
gi|158589164|gb|EDP28268.1| hypothetical protein Bm1_57120 [Brugia malayi]
Length = 68
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 58 RGNNIRYYILPDSLPLETLLIDDAPRSKGKR 88
+GNNIRY ILPD++PL+TLL+DD PR K R
Sbjct: 6 KGNNIRYIILPDTIPLDTLLVDDEPRKKPAR 36
>gi|390597253|gb|EIN06653.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 130
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRG 59
++ L ++ + +ELKNG +G + D MN L+ V T G+ L +RG
Sbjct: 4 LSLLNAAQNKPMLVELKNGETFNGHLINCDNFMNITLREVYQTSADGERFWKLKECYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGG 110
+ I+Y +PD+L DA + + R G A G+ GGRGGRG
Sbjct: 64 STIKYLRVPDTLL-------DAVKEEQTRAREAGRSARGSHVSGGRGGRGA 107
>gi|259483912|tpe|CBF79688.1| TPA: small nuclear ribonucleoprotein (LSM2), putative
(AFU_orthologue; AFUA_2G15210) [Aspergillus nidulans
FGSC A4]
Length = 98
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L+++ VTIELKN ++ GT++ VD +N L + + K P +++ ++ +R
Sbjct: 4 FSFFKTLTNQVVTIELKNDIRIRGTLKSVDQYLNIKLDDIDVLDLDKYPHLSSVKNMFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGAR 100
G+ +RY +LP S ++ L++DA R + AG AR
Sbjct: 64 GSVVRYVVLPRS-EVDVGLLEDATRREA------ANQAGKAR 98
>gi|440640678|gb|ELR10597.1| hypothetical protein GMDG_04869 [Geomyces destructans 20631-21]
Length = 100
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L + VT+ELKN Q+ GT++ VD +N L + + + K P +++ ++ +R
Sbjct: 4 FSFFKTLVDQEVTVELKNDIQIRGTLKSVDQYLNIKLDDISVVEEIKYPHLSSVKNVFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPR 83
G+ +RY LP ++ ++T L++DA R
Sbjct: 64 GSVVRYVHLPGAV-VDTQLLEDATR 87
>gi|325087346|gb|EGC40656.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces capsulatus H88]
Length = 148
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLRGN 60
F +++ TVTIELKN ++ GT++ VD +N L +++ + P +++ +I +RG+
Sbjct: 56 FFKTITNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDEYPHLSSVKNIFVRGS 115
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRR 92
+RY +LP + ++ L++DA R + + + +
Sbjct: 116 VVRYIVLPQA-EVDRGLLEDATRREAENQANK 146
>gi|238488709|ref|XP_002375592.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
flavus NRRL3357]
gi|317136870|ref|XP_003189990.1| U6 snRNA-associated Sm-like protein LSm2 [Aspergillus oryzae RIB40]
gi|220697980|gb|EED54320.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
flavus NRRL3357]
Length = 98
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L+++TV IELKN ++ GT++ VD +N L V + K P +++ ++ +R
Sbjct: 4 FSFFKTLTNQTVIIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNMFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGAR 100
G+ +RY +LP S ++ L++DA R + AG AR
Sbjct: 64 GSVVRYVVLPRS-EVDVGLLEDATRREA------ANQAGKAR 98
>gi|428184458|gb|EKX53313.1| hypothetical protein GUITHDRAFT_84386 [Guillardia theta CCMP2712]
Length = 130
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE +T+ELK+G GT+Q + MN ++ V MT + +TL+ + +RG
Sbjct: 7 VKLLHEAESHIITVELKSGELYRGTLQEAEDNMNCNMTNVTMTGRDGSISTLEQVFIRGG 66
Query: 61 NIRYYILPDSL 71
IR+ ILPD L
Sbjct: 67 LIRFVILPDIL 77
>gi|452822235|gb|EME29256.1| small nuclear ribonucleoprotein D3 [Galdieria sulphuraria]
Length = 125
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE TVT+E K+G GT+ + MN LK V T + + T + + LRG+
Sbjct: 7 IKLLHEAISQTVTVETKSGDLYRGTLYDAEDNMNCQLKKVTCTGRDGKITPFEHVFLRGS 66
Query: 61 NIRYYILPDSL 71
IR++I+PD L
Sbjct: 67 KIRFFIVPDIL 77
>gi|315044655|ref|XP_003171703.1| small nuclear ribonucleoprotein SM D3 [Arthroderma gypseum CBS
118893]
gi|327297404|ref|XP_003233396.1| small nuclear ribonucleoprotein Sm D3 [Trichophyton rubrum CBS
118892]
gi|311344046|gb|EFR03249.1| small nuclear ribonucleoprotein SM D3 [Arthroderma gypseum CBS
118893]
gi|326464702|gb|EGD90155.1| small nuclear ribonucleoprotein Sm D3 [Trichophyton rubrum CBS
118892]
gi|326472436|gb|EGD96445.1| pre-mRNA splicing factor [Trichophyton tonsurans CBS 112818]
gi|326481659|gb|EGE05669.1| small nuclear ribonucleoprotein D3 polypeptide [Trichophyton
equinum CBS 127.97]
Length = 116
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+E+ +G G + + MN LK + +T + + LD + +RG++++++I+PD
Sbjct: 21 HVVTLEITSGHVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVKFFIVPD 80
Query: 70 SLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRG 103
++ +AP RS+G+ RG G G ARGR
Sbjct: 81 -------MLRNAPMFRSRGQ----RGRGVGLARGRA 105
>gi|110758613|ref|XP_001120143.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Apis mellifera]
gi|380017261|ref|XP_003692578.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like isoform 1
[Apis florea]
gi|380017263|ref|XP_003692579.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like isoform 2
[Apis florea]
Length = 142
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 22/136 (16%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE T+T E G G + + MN ++ + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHTITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGHEVQLENVYIRGS 66
Query: 61 NIRYYILPDSL---PL---------------ETLLIDDAPRSKGKRDSRRGGGAGGARGR 102
IR+ ILPD L P+ ++ ++ R +G+ ++RG G G A
Sbjct: 67 KIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRGRGTGSAPWL 126
Query: 103 GGRGGRGGGRGGRGRG 118
+ GG + GRGRG
Sbjct: 127 NQQNQPGGSQAGRGRG 142
>gi|449297262|gb|EMC93280.1| hypothetical protein BAUCODRAFT_75741 [Baudoinia compniacensis UAMH
10762]
Length = 1058
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLRG 59
+F L ++ VT+ELKN + GT++ VD +N L + + + K P +++ ++ +RG
Sbjct: 930 SFFKTLVNQEVTVELKNDISIRGTLKSVDQYLNIKLDDISVVEEMKYPHLSSVKNVFIRG 989
Query: 60 NNIRYYILPDSLPLETLLIDDAPR 83
+ +RY LP + ++T L++DA R
Sbjct: 990 SVVRYVHLP-AAAVDTPLLEDATR 1012
>gi|342888751|gb|EGU87970.1| hypothetical protein FOXB_01453 [Fusarium oxysporum Fo5176]
gi|408397687|gb|EKJ76827.1| hypothetical protein FPSE_03013 [Fusarium pseudograminearum CS3096]
Length = 115
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+E+ +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 18 HIVTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD 77
Query: 70 SLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
++ +AP + + + RG G G ARGR
Sbjct: 78 -------MLRNAPMFRSR--NVRGRGVGLARGRA 102
>gi|171693559|ref|XP_001911704.1| hypothetical protein [Podospora anserina S mat+]
gi|170946728|emb|CAP73532.1| unnamed protein product [Podospora anserina S mat+]
Length = 118
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 17/119 (14%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL +E VT+E+ +G G + + MN LK + +T + + L+ + +RG+
Sbjct: 9 IKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG----GRGGRGGGRGGR 115
++R++I+PD ++ +AP + + + RG G G ARGR R G RGGR
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSR--NVRGRGVGLARGRATVSRARASGGPPRGGR 118
>gi|340729743|ref|XP_003403155.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Bombus
terrestris]
gi|350411432|ref|XP_003489349.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Bombus
impatiens]
Length = 142
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 22/136 (16%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE T+T E G G + + MN ++ + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHTITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGREAQLENVYIRGS 66
Query: 61 NIRYYILPDSL---PL---------------ETLLIDDAPRSKGKRDSRRGGGAGGARGR 102
IR+ ILPD L P+ ++ ++ R +G+ ++RG G G A
Sbjct: 67 KIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRGRGTGSAPWL 126
Query: 103 GGRGGRGGGRGGRGRG 118
+ GG + GRGRG
Sbjct: 127 NQQNQPGGSQAGRGRG 142
>gi|154271292|ref|XP_001536499.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces capsulatus
NAm1]
gi|150409169|gb|EDN04619.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces capsulatus
NAm1]
Length = 98
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F +++ TVTIELKN ++ GT++ VD +N L +++ + P +++ +I +R
Sbjct: 4 FSFFKTITNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDEYPHLSSVKNIFVR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRR 92
G+ +RY +LP + ++ L++DA R + + + +
Sbjct: 64 GSVVRYIVLPQA-EVDRGLLEDATRREAENQAHK 96
>gi|225554412|gb|EEH02710.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces capsulatus
G186AR]
gi|240273447|gb|EER36967.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
Length = 98
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F +++ TVTIELKN ++ GT++ VD +N L +++ + P +++ +I +R
Sbjct: 4 FSFFKTITNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDEYPHLSSVKNIFVR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGK 87
G+ +RY +LP + ++ L++DA R + +
Sbjct: 64 GSVVRYIVLPQA-EVDRGLLEDATRREAE 91
>gi|395328270|gb|EJF60663.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 132
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRG 59
++ L ++ + +ELKNG +G + D MN L+ V T +G + L +RG
Sbjct: 4 LSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDKFWKLRECYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+ I+Y +PD+L DA + + R +R GR RG G G RGRG
Sbjct: 64 STIKYLRVPDTLL-------DAVKEEQNR-AREA-------GRSARGAHVSGAGQRGRGA 108
Query: 120 PR 121
P+
Sbjct: 109 PQ 110
>gi|67523101|ref|XP_659611.1| hypothetical protein AN2007.2 [Aspergillus nidulans FGSC A4]
gi|40745683|gb|EAA64839.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
gi|259487374|tpe|CBF86001.1| TPA: small nuclear ribonucleoprotein SmD3, putative
(AFU_orthologue; AFUA_4G10240) [Aspergillus nidulans
FGSC A4]
Length = 116
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+E+ +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 21 HVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD 80
Query: 70 SLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRG 103
++ +AP R++G+ RG G G ARG+
Sbjct: 81 -------MLRNAPMFRTRGQ----RGRGVGLARGKA 105
>gi|363754415|ref|XP_003647423.1| hypothetical protein Ecym_6224 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891060|gb|AET40606.1| hypothetical protein Ecym_6224 [Eremothecium cymbalariae
DBVPG#7215]
Length = 95
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+FL L + VT+ELKN ++ GT++ VD +N L + K P +++ +I +R
Sbjct: 4 FSFLKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCNNNAKYPHLSSVRNIFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPR 83
G+ +RY L S+ ++T L+ DA R
Sbjct: 64 GSTVRYVYLNKSI-VDTNLLQDAAR 87
>gi|156841541|ref|XP_001644143.1| hypothetical protein Kpol_1053p22 [Vanderwaltozyma polyspora DSM
70294]
gi|156114779|gb|EDO16285.1| hypothetical protein Kpol_1053p22 [Vanderwaltozyma polyspora DSM
70294]
Length = 95
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPT--TLDSISLR 58
+F L + VT+ELKN ++ GT++ VD +N L + T + K P ++ +I +R
Sbjct: 4 FSFFKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCTDEQKYPHLGSVRNIFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPR 83
G+ +RY L S+ ++T L+ DA R
Sbjct: 64 GSTVRYVYLQKSM-VDTNLLQDAAR 87
>gi|296810002|ref|XP_002845339.1| small nuclear ribonucleoprotein SM D3 [Arthroderma otae CBS 113480]
gi|238842727|gb|EEQ32389.1| small nuclear ribonucleoprotein SM D3 [Arthroderma otae CBS 113480]
Length = 116
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
+T+E+ +G G + + MN LK + +T + + LD + +RG++++++I+PD
Sbjct: 21 HVITLEITSGHVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVKFFIVPD 80
Query: 70 SLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRG 103
++ +AP RS+G+ RG G G ARGR
Sbjct: 81 -------MLRNAPMFRSRGQ----RGRGVGLARGRA 105
>gi|70993910|ref|XP_751802.1| small nuclear ribonucleoprotein SmD3 [Aspergillus fumigatus Af293]
gi|119500466|ref|XP_001266990.1| small nuclear ribonucleoprotein SmD3, putative [Neosartorya
fischeri NRRL 181]
gi|145258404|ref|XP_001402031.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus niger CBS
513.88]
gi|66849436|gb|EAL89764.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
fumigatus Af293]
gi|119415155|gb|EAW25093.1| small nuclear ribonucleoprotein SmD3, putative [Neosartorya
fischeri NRRL 181]
gi|134074637|emb|CAK44670.1| unnamed protein product [Aspergillus niger]
gi|159125281|gb|EDP50398.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
fumigatus A1163]
gi|350632459|gb|EHA20827.1| hypothetical protein ASPNIDRAFT_204683 [Aspergillus niger ATCC
1015]
gi|358370798|dbj|GAA87408.1| small nuclear ribonucleoprotein SmD3 [Aspergillus kawachii IFO
4308]
Length = 116
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+E+ +G G + + MN LK + +T + + LD + +RG++++++I+PD
Sbjct: 21 HVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVKFFIVPD 80
Query: 70 SLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRG 103
++ +AP RS+G+ RG G G ARG+
Sbjct: 81 -------MLRNAPMFRSRGQ----RGRGVGLARGKA 105
>gi|358057850|dbj|GAA96352.1| hypothetical protein E5Q_03018 [Mixia osmundae IAM 14324]
Length = 96
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 7 LSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLRGNNIRY 64
L+ + VT+ELKN + GT++ VD +N L + + + P T+ + +RG+ IRY
Sbjct: 10 LTEQVVTVELKNDLAIRGTLKSVDQFLNIKLDNISVLDPERHPHMMTVRNCFVRGSVIRY 69
Query: 65 YILPDSLPLETLLIDDAPRSKGKRDSRR 92
+P + +ET L++DA R + +S+R
Sbjct: 70 VHIPKN-AIETPLLEDATRREAANNSKR 96
>gi|384497430|gb|EIE87921.1| hypothetical protein RO3G_12632 [Rhizopus delemar RA 99-880]
Length = 129
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 11/86 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE +++ELK G G + + MN LK + +T + + LD + +RG+
Sbjct: 7 IKLLHEAQGHIISLELKTGQLYRGKLLEAEDNMNIQLKDITVTARDGRVSQLDQVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKG 86
++R++I+PD ++ +AP KG
Sbjct: 67 HVRFFIVPD-------MLKNAPMFKG 85
>gi|357145745|ref|XP_003573751.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Brachypodium
distachyon]
Length = 134
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK G G++ + N ++ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
+R+ I+PD ++ +AP K RG G+ GRG
Sbjct: 69 RVRFMIIPD-------MLKNAPMFKRLEARIRGKGSAIGVGRG 104
>gi|378726753|gb|EHY53212.1| small nuclear ribonucleoprotein D3 [Exophiala dermatitidis
NIH/UT8656]
Length = 116
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+EL +G G + + MN LK + T + + LD + +RG+++R++I+PD
Sbjct: 21 HVVTLELTSGQVYRGKLLEAEDNMNVQLKDITATARDGRVSHLDQVYIRGSHVRFFIVPD 80
Query: 70 SLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRG----GRGGR 108
++ +AP R++G RG G G ARGR R GR
Sbjct: 81 -------MLRNAPMFRTRGI----RGRGVGLARGRATVNRARAGR 114
>gi|212538165|ref|XP_002149238.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
gi|242807429|ref|XP_002484954.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
stipitatus ATCC 10500]
gi|210068980|gb|EEA23071.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
gi|218715579|gb|EED15001.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 116
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
VT+E+ +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 21 HVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD 80
Query: 70 SLPLETLLIDDAP--RSKGKRDSRRGGGAGGARGRG 103
++ +AP R++G+ RG G G ARG+
Sbjct: 81 -------MLRNAPMFRTRGQ----RGRGVGLARGKA 105
>gi|357511251|ref|XP_003625914.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|357516335|ref|XP_003628456.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355500929|gb|AES82132.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355522478|gb|AET02932.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 150
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGG-------GAGGARGRGGRGGRGGGRG 113
+ID K + D + G G A G GGR +G GRG
Sbjct: 75 ------VIDKVQEEKSRTDRKPPGVGRGRGRGREDAAGAGGRQTKGTGRG 118
>gi|343427423|emb|CBQ70950.1| related to small nuclear ribonucleoprotein sm d3 [Sporisorium
reilianum SRZ2]
Length = 136
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 5 MKLSHETV----TIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE V T+ELK G GT+ + N +K + +T + + L+++ +RGN
Sbjct: 8 VKLIHEAVGHVITVELKGGAAYRGTLYDAEDNFNIAMKDITVTAPDGKQSHLENVYIRGN 67
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
+R+ I+PD L + P + +G G G ARGR
Sbjct: 68 MLRFIIVPDMLQQAPMFKRIGP------NGMKGRGIGSARGRA 104
>gi|46123175|ref|XP_386141.1| hypothetical protein FG05965.1 [Gibberella zeae PH-1]
Length = 365
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
VT+E+ +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 270 VTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD-- 327
Query: 72 PLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
++ +AP + + + RG G G ARGR
Sbjct: 328 -----MLRNAPMFRSR--NVRGRGVGLARGRA 352
>gi|168011639|ref|XP_001758510.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168011861|ref|XP_001758621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690120|gb|EDQ76488.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690231|gb|EDQ76599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 137
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G G++ + N+ L+++ T K + + L+ + +RG+
Sbjct: 9 VKLLHEAEGHIVTVELKSGEVYRGSLIECEDNWNSQLESITYTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSL 71
+RY I+PD L
Sbjct: 69 KVRYMIIPDML 79
>gi|18394883|ref|NP_564119.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|8886923|gb|AAF80609.1|AC069251_2 F2D10.7 [Arabidopsis thaliana]
gi|15724292|gb|AAL06539.1|AF412086_1 At1g20580/F2D10_6 [Arabidopsis thaliana]
gi|20334748|gb|AAM16235.1| At1g20580/F2D10_6 [Arabidopsis thaliana]
gi|332191869|gb|AEE29990.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
Length = 131
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G G++ + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGR 108
+R+ ++PD L + R KGK S G RGRG G+
Sbjct: 69 KVRFMVIPDILKHAPMFKRLDARIKGKSSS-----LGVGRGRGAMRGK 111
>gi|194761808|ref|XP_001963115.1| GF14101 [Drosophila ananassae]
gi|190616812|gb|EDV32336.1| GF14101 [Drosophila ananassae]
Length = 140
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +L+ V T K G + +RG+ I+Y +PD
Sbjct: 1 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 60
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGG-------RGGRGRGGP 120
+ ++ + ++K + + GG + RGGR GG R G+G GGP
Sbjct: 61 V---IDMVKEDAQAKSRNRTEMNKNRGGNSSQNQRGGRPGGNRNNVGNRSGQGYGGP 114
>gi|400601331|gb|EJP68974.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 115
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
+T+E+ +G G + + MN LK + +T + + LD + +RG+++R++I+PD
Sbjct: 20 ITLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPD-- 77
Query: 72 PLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
++ +AP + + RG G G ARGR
Sbjct: 78 -----MLRNAPMFRSS--NLRGRGVGMARGRA 102
>gi|388516583|gb|AFK46353.1| unknown [Lotus japonicus]
Length = 132
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ V++ELK+G G++ + N L+++ T K + + L+ + +RG+
Sbjct: 9 VKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSR-RGGGAGGARGRG 103
+R+ ++PD ++ +AP K + D+R +G GA GRG
Sbjct: 69 KVRFMVIPD-------MLKNAPMFK-RLDARVKGKGASLGVGRG 104
>gi|302830880|ref|XP_002947006.1| small nuclear ribonucleoprotein [Volvox carteri f. nagariensis]
gi|300268050|gb|EFJ52232.1| small nuclear ribonucleoprotein [Volvox carteri f. nagariensis]
Length = 129
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G G + + MN LK V T + + L I +RG+
Sbjct: 12 VKLLHEAEGHVVTVELKSGEMYRGELFEAEDNMNVQLKDVTATGRDGRVSQLAHIFIRGS 71
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRG 118
+R++I+PD L + P+ K K + GG G A G GRGRG
Sbjct: 72 RVRFFIIPDMLKNAPMFKRIDPKFKNKNMALGVGGRGRAAAVRAAAKAKTGPSGRGRG 129
>gi|66807347|ref|XP_637396.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74853183|sp|Q54KX4.1|LSM4_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|60465817|gb|EAL63891.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 177
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP-TTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +LK V T K + + S +RGN I+Y +PD
Sbjct: 15 IMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYIRGNTIKYISVPDE 74
Query: 71 L------PLETLLI-----DDAPRSKGKRDSRRGGGAGGARGRG 103
+ +TL +D+ R +G+ D G G G A GRG
Sbjct: 75 IIDLVAEEEQTLRTTYQQRNDSNRGRGRGDGFAGRGRGDASGRG 118
>gi|159480580|ref|XP_001698360.1| small nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
gi|158282100|gb|EDP07853.1| small nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
Length = 127
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G G + + MN LK V T + T L + +RG+
Sbjct: 12 VKLLHEAEGHVVTVELKSGEMYRGELCDAEDNMNCQLKDVTATGRDGRVTQLAHLFIRGS 71
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK 87
+R++I+PD L + P+ K K
Sbjct: 72 RVRFFIIPDMLKNAPMFKRIDPKFKNK 98
>gi|15223010|ref|NP_177757.1| snRNP core protein SMD3 [Arabidopsis thaliana]
gi|6554488|gb|AAF16670.1|AC012394_19 putative small nuclear ribonucleoprotein Sm D3; 79504-78381
[Arabidopsis thaliana]
gi|6573711|gb|AAF17631.1|AC009978_7 T23E18.23 [Arabidopsis thaliana]
gi|14190503|gb|AAK55732.1|AF380651_1 At1g76300/F15M4_20 [Arabidopsis thaliana]
gi|15809764|gb|AAL06810.1| At1g76300/F15M4_20 [Arabidopsis thaliana]
gi|21592857|gb|AAM64807.1| small nuclear ribonucleoprotein, putative [Arabidopsis thaliana]
gi|332197701|gb|AEE35822.1| snRNP core protein SMD3 [Arabidopsis thaliana]
Length = 128
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ V++E+K+G G++ + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
+R+ ++PD ++ +AP K R + G RGRG
Sbjct: 69 LVRFLVIPD-------MLKNAPMFKDVRGKGKSASLGVGRGRGA 105
>gi|71002350|ref|XP_755856.1| small nuclear ribonucleoprotein (LSM2) [Aspergillus fumigatus
Af293]
gi|119481913|ref|XP_001260985.1| small nuclear ribonucleoprotein (LSM2), putative [Neosartorya
fischeri NRRL 181]
gi|66853494|gb|EAL93818.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
fumigatus Af293]
gi|119409139|gb|EAW19088.1| small nuclear ribonucleoprotein (LSM2), putative [Neosartorya
fischeri NRRL 181]
gi|159129913|gb|EDP55027.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
fumigatus A1163]
Length = 91
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L+++TVTIELKN ++ GT++ VD +N L V + K P +++ ++ +R
Sbjct: 4 FSFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNMFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPR 83
G+ +RY +LP S ++ L++DA R
Sbjct: 64 GSVVRYVMLPRS-EVDVGLLEDATR 87
>gi|328856039|gb|EGG05162.1| hypothetical protein MELLADRAFT_48913 [Melampsora larici-populina
98AG31]
Length = 138
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 6 KLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNN 61
KL HE +T+ELK G G + + +N LK + +T + T LD + +RG
Sbjct: 10 KLLHEALGHVITVELKTGQVYRGKLHDAEDNLNISLKDITVTHRDGRVTQLDQVYIRGPM 69
Query: 62 IRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
IR Y++PD ++ +AP K + +G G G ARGR
Sbjct: 70 IRLYVIPD-------MLQNAPMFK-RGTGVKGRGIGTARGRA 103
>gi|225428263|ref|XP_002282385.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Vitis vinifera]
gi|297744494|emb|CBI37756.3| unnamed protein product [Vitis vinifera]
Length = 132
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G G++ + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
+R+ ++PD ++ +AP KR R G G A G G
Sbjct: 69 KVRFMVIPD-------MLKNAPMF--KRLDARVKGKGSALGVG 102
>gi|331242127|ref|XP_003333710.1| small nuclear ribonucleoprotein D3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312700|gb|EFP89291.1| small nuclear ribonucleoprotein D3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 131
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 6 KLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNN 61
KL HE +T+ELK G G + + +N LK + +T + T LD + +RG
Sbjct: 10 KLLHEALGHVITVELKTGQVYRGKLHDAEDNLNISLKDITVTHRDGRVTQLDQVYIRGPM 69
Query: 62 IRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
IR Y++PD ++ +AP K + +G G G ARGR
Sbjct: 70 IRLYVVPD-------MLQNAPMFK-RGTGVKGRGIGTARGRA 103
>gi|383853962|ref|XP_003702491.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Megachile
rotundata]
Length = 142
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN ++ + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGREVELENVYIRGS 66
Query: 61 NIRYYILPDSL---PL---------------ETLLIDDAPRSKGKRDSRRGGGAGGARGR 102
IR+ ILPD L P+ ++ ++ R +G+ ++RG G G A
Sbjct: 67 KIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRGRGTGSAPWL 126
Query: 103 GGRGGRGGGRGGRGRG 118
+ GG + GRGRG
Sbjct: 127 NQQNQPGGSQAGRGRG 142
>gi|307192021|gb|EFN75405.1| Small nuclear ribonucleoprotein Sm D3 [Harpegnathos saltator]
Length = 142
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 22/135 (16%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE +T E G G + + MN ++ + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGRVAQLENVYIRGS 66
Query: 61 NIRYYILPDSL---PL---------------ETLLIDDAPRSKGKRDSRRGGGAGGARGR 102
IR+ ILPD L P+ ++ ++ R +G+ ++RG G G A
Sbjct: 67 KIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRGKGTGSAPWL 126
Query: 103 GGRGGRGGGRGGRGR 117
+G GG + GRGR
Sbjct: 127 NQQGQPGGSQAGRGR 141
>gi|357113192|ref|XP_003558388.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein Sm
D3-like [Brachypodium distachyon]
Length = 132
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK G ++ + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRXSMLECEDNWNCQLENISFTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
+R+ I+PD ++ +AP K RG G+ GRG
Sbjct: 69 RVRFMIIPD-------MLKNAPMFKRLEARIRGKGSAIGVGRG 104
>gi|320589183|gb|EFX01645.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 116
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
VT+E+ +G G + + MN LK + +T + + L+ + +RG+++R++I+PD
Sbjct: 20 VTLEITSGQTYRGRLLEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGSHVRFFIVPD-- 77
Query: 72 PLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
++ +AP + + + RG G G ARGR
Sbjct: 78 -----MLRNAPMFRSR--NVRGRGVGLARGRA 102
>gi|358055777|dbj|GAA98122.1| hypothetical protein E5Q_04805 [Mixia osmundae IAM 14324]
Length = 128
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 6 KLSHETV----TIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNN 61
KL HE+V TIELK G G + + +N + + +T + T LD + +RG
Sbjct: 10 KLLHESVGHVITIELKTGQTYRGKLLDAEDNLNISMSQITVTQRDGRVTQLDQVYIRGPM 69
Query: 62 IRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
I ++I+PD L + P ++ +G G G ARGR
Sbjct: 70 INFFIVPDMLAHAPMFKRQGP------NALKGRGIGTARGRA 105
>gi|195658123|gb|ACG48529.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK G G++ + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAG 97
+R+ I+PD ++ +AP K RG G+
Sbjct: 69 RVRFMIIPD-------MLKNAPMFKRLEARIRGKGSA 98
>gi|21555384|gb|AAM63846.1| small nuclear ribonucleoprotein, putative [Arabidopsis thaliana]
Length = 131
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G G++ + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
+R+ ++PD L + R KGK S G G G A RG
Sbjct: 69 KVRFMVIPDILKHAPMFKRLDARIKGK-SSSLGVGRGRAAMRG 110
>gi|384251125|gb|EIE24603.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 124
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE +T+ELK+G G + + + N LK V T K + L+ I +RG+
Sbjct: 11 VKLLHEAEGHVITVELKSGETYRGELAEAEDSWNVQLKQVTATAKDGRVSHLEHIFVRGS 70
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK 87
+R+ I+PD L + P++K K
Sbjct: 71 RVRFVIIPDMLKNAPMFKRIDPKNKAK 97
>gi|116206378|ref|XP_001228998.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183079|gb|EAQ90547.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 115
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
VT+E+ +G G + + MN LK + +T + + L+ + +RG+++R++I+PD
Sbjct: 20 VTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGSHVRFFIVPD-- 77
Query: 72 PLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
++ +AP + + + RG G G ARGR
Sbjct: 78 -----MLRNAPMFRSR--NVRGRGVGLARGRA 102
>gi|85102544|ref|XP_961352.1| small nuclear ribonucleoprotein Sm D3 [Neurospora crassa OR74A]
gi|12718393|emb|CAC28701.1| probable small nuclear ribonucleoprotein SM D3 [Neurospora crassa]
gi|28922896|gb|EAA32116.1| small nuclear ribonucleoprotein Sm D3 [Neurospora crassa OR74A]
Length = 116
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
VT+E+ +G G + + MN LK + +T + + L+ + +RG+++R++I+PD
Sbjct: 20 VTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGSHVRFFIVPD-- 77
Query: 72 PLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
++ +AP + + + RG G G ARGR
Sbjct: 78 -----MLRNAPMFRSR--NVRGRGVGLARGRA 102
>gi|195657699|gb|ACG48317.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|414865766|tpg|DAA44323.1| TPA: small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK G G++ + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAG 97
+R+ I+PD ++ +AP K RG G+
Sbjct: 69 RVRFMIIPD-------MLKNAPMFKRLEARIRGKGSA 98
>gi|403215454|emb|CCK69953.1| hypothetical protein KNAG_0D02020 [Kazachstania naganishii CBS
8797]
Length = 95
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLR 58
+F L + V +ELKN ++ GT+Q VD +N L + + K P +T+ +I +R
Sbjct: 4 FSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCDDETKYPHLSTVRNIFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKG 86
G+ +RY L ++ ++T L+ DA R +
Sbjct: 64 GSTVRYVYLNKNM-VDTNLLQDATRREA 90
>gi|330802087|ref|XP_003289052.1| hypothetical protein DICPUDRAFT_79815 [Dictyostelium purpureum]
gi|325080886|gb|EGC34423.1| hypothetical protein DICPUDRAFT_79815 [Dictyostelium purpureum]
Length = 149
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT+ELKNG GT+ + MN +K + +T K + ++ +RG+
Sbjct: 7 VKILHEADGHIVTVELKNGELYRGTLIESEDNMNCRMKNITVTAKDGRNSQMEYCYVRGS 66
Query: 61 NIRYYILPDSL 71
+R+ ILPD L
Sbjct: 67 KVRFIILPDIL 77
>gi|389644246|ref|XP_003719755.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae 70-15]
gi|351639524|gb|EHA47388.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae 70-15]
gi|440466514|gb|ELQ35778.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae Y34]
gi|440477082|gb|ELQ58226.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae P131]
Length = 119
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL +E +T+E+ G G + + MN L+ + +T + + LD + +RG+
Sbjct: 9 IKLLNEAQGHIITLEITTGQTYRGKLIDAEDNMNIQLRDITVTARDGRVSHLDQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
++R++I+PD L +AP + + + RG G G ARGR
Sbjct: 69 HVRFFIVPDMLR-------NAPMFRSR--NVRGRGVGLARGRA 102
>gi|226505392|ref|NP_001152085.1| LOC100285722 [Zea mays]
gi|194699166|gb|ACF83667.1| unknown [Zea mays]
gi|195652485|gb|ACG45710.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|413935155|gb|AFW69706.1| Small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK G G++ + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
+R+ I+PD ++ +AP KR R G G A G G
Sbjct: 69 RVRFMIIPD-------MLKNAP--MFKRLEARIRGKGSAVGVG 102
>gi|226507464|ref|NP_001150683.1| LOC100284316 [Zea mays]
gi|194696928|gb|ACF82548.1| unknown [Zea mays]
gi|195619600|gb|ACG31630.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|195641042|gb|ACG39989.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|413956400|gb|AFW89049.1| Small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK G G++ + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAG 97
+R+ I+PD ++ +AP K RG G+
Sbjct: 69 RVRFMIIPD-------MLKNAPMFKRLEARIRGKGSA 98
>gi|402079014|gb|EJT74279.1| small nuclear ribonucleoprotein Sm D3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 130
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL +E +T+E+ G G + + MN L+ + +T + + LD + +RG+
Sbjct: 9 IKLLNEAQGHIITLEITTGQTYRGKLIEAEDNMNIQLRDITVTARDGRVSHLDQVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
++R++I+PD ++ +AP + + + RG G G ARGR
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSR--NVRGRGVGLARGRA 102
>gi|115401818|ref|XP_001216497.1| hypothetical protein ATEG_07876 [Aspergillus terreus NIH2624]
gi|114190438|gb|EAU32138.1| hypothetical protein ATEG_07876 [Aspergillus terreus NIH2624]
Length = 957
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLRG 59
+F L+++TVTIELKN ++ GT++ VD +N L V + K P +++ ++ +RG
Sbjct: 5 SFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNMFIRG 64
Query: 60 NNIRYYILPDSLPLETLLIDDAPR 83
+ +RY +LP S ++ L++DA R
Sbjct: 65 SVVRYVMLPRS-EVDIGLLEDATR 87
>gi|170574009|ref|XP_001892634.1| small nuclear ribonucleoprotein Sm D3 [Brugia malayi]
gi|170579971|ref|XP_001895061.1| small nuclear ribonucleoprotein Sm D3 [Brugia malayi]
gi|312076574|ref|XP_003140922.1| small nuclear ribonucleoprotein Sm D3 [Loa loa]
gi|158598127|gb|EDP36091.1| small nuclear ribonucleoprotein Sm D3, putative [Brugia malayi]
gi|158601689|gb|EDP38531.1| small nuclear ribonucleoprotein Sm D3, putative [Brugia malayi]
gi|307763915|gb|EFO23149.1| small nuclear ribonucleoprotein Sm D3 [Loa loa]
gi|402590446|gb|EJW84376.1| small nuclear ribonucleoprotein Sm D3 [Wuchereria bancrofti]
Length = 138
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 16/133 (12%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE +T+E G G + + MN + V +T + LD++ +RG+
Sbjct: 8 IKILHEAEGHVITLETTIGEVYRGKLNEAEDNMNCQMSEVTVTYRDGRTHHLDNVFIRGS 67
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGG-GAGGARGRGGRGGRGGGRGGRGRGG 119
IR+ ILPD ++ +AP K +++G G G R GRG RG G RGRGG
Sbjct: 68 KIRFMILPD-------MLKNAPMFKNIGRAQKGAVGMGMGDNRDGRGLRGRGTAFRGRGG 120
Query: 120 PRGR----GGPPR 128
PRG GG PR
Sbjct: 121 PRGNQRGPGGMPR 133
>gi|453087211|gb|EMF15252.1| Sm-like ribonucleo protein, partial [Mycosphaerella populorum
SO2202]
Length = 115
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
VT+E+ +G G + + MN L+ + +T + T LD + +RG+++R +I+PD
Sbjct: 20 VTVEIDSGQTYRGKLIEAEDNMNVQLENINVTQRDGRVTHLDRVYIRGSHVRLFIVPD-- 77
Query: 72 PLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
++ +AP + + + RG G G ARGR
Sbjct: 78 -----MLRNAPMFRSR--NARGRGVGLARGRA 102
>gi|452845934|gb|EME47867.1| hypothetical protein DOTSEDRAFT_42182 [Dothistroma septosporum
NZE10]
Length = 115
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 13/94 (13%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
VT+E+ +G G + + MN L+ + +T + T LD + +RG+++R +I+PD
Sbjct: 20 VTVEIDSGQTYRGKLIEAEDNMNVQLENINVTQRDGRVTHLDRVYIRGSHVRLFIVPD-- 77
Query: 72 PLETLLIDDAP--RSKGKRDSRRGGGAGGARGRG 103
++ +AP RS+G RG G G ARGR
Sbjct: 78 -----MLRNAPMFRSRGT----RGRGVGLARGRA 102
>gi|156550773|ref|XP_001605596.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Nasonia
vitripennis]
Length = 142
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 23/125 (18%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE +T E G G + + MN ++ + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGRVAQLENVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRG-------GRGGGRG 113
IR+ ILPD ++ +AP K R GG G GRG GRG G+
Sbjct: 67 KIRFLILPD-------MLKNAPMFK-----RPGGKGSGTAGRGKSAILRAQARGRGRGQN 114
Query: 114 GRGRG 118
RGRG
Sbjct: 115 QRGRG 119
>gi|452985910|gb|EME85666.1| hypothetical protein MYCFIDRAFT_52885 [Pseudocercospora fijiensis
CIRAD86]
Length = 115
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
VT+E+ +G G + + MN L+ + +T + T LD + +RG+++R +I+PD
Sbjct: 20 VTVEIDSGQTYRGRLIEAEDNMNCQLENINVTQRDGRVTHLDRVYIRGSHVRLFIVPD-- 77
Query: 72 PLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
++ +AP K + RG G G ARGR
Sbjct: 78 -----MLRNAPMFKSR--GTRGRGVGLARGRA 102
>gi|332376551|gb|AEE63415.1| unknown [Dendroctonus ponderosae]
Length = 135
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGR 115
+ I+Y +PD + ++ + + ++K RD + G G R R G GGR +
Sbjct: 64 STIKYLRIPDEV-IDMVKEETVTKNKQSRDQKGGRGGQNQRNRPAARGNFGGRANK 118
>gi|242041599|ref|XP_002468194.1| hypothetical protein SORBIDRAFT_01g041430 [Sorghum bicolor]
gi|241922048|gb|EER95192.1| hypothetical protein SORBIDRAFT_01g041430 [Sorghum bicolor]
Length = 132
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK G G + + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAG 97
+R+ I+PD ++ +AP K RG G+
Sbjct: 69 RVRFMIIPD-------MLKNAPMFKRLEARIRGKGSA 98
>gi|161899151|ref|XP_001712802.1| mRNA splicing factor snRNP Sm-D [Bigelowiella natans]
gi|75756295|gb|ABA27190.1| mRNA splicing factor snRNP Sm-D [Bigelowiella natans]
Length = 77
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 6 KLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYY 65
KL +E++ I LK+ T + GT+Q D+ N LK K++ K K + +RGN++RY
Sbjct: 10 KLKNESLKIVLKSHTTIIGTLQDSDILGNIVLKFAKVSQKNKNEMIYKDLIIRGNSVRYI 69
Query: 66 ILP 68
ILP
Sbjct: 70 ILP 72
>gi|307185014|gb|EFN71243.1| Small nuclear ribonucleoprotein Sm D3 [Camponotus floridanus]
Length = 142
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 22/136 (16%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE +T E G G + + MN ++ + +T + + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGQVGQLENVYIRGS 66
Query: 61 NIRYYILPDSL---PL---------------ETLLIDDAPRSKGKRDSRRGGGAGGARGR 102
IR+ ILPD L P+ ++ ++ R +G+ ++RG G G A
Sbjct: 67 KIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRGKGTGSAPWL 126
Query: 103 GGRGGRGGGRGGRGRG 118
+ GG + GRGRG
Sbjct: 127 NQQNQPGGSQTGRGRG 142
>gi|297743868|emb|CBI36838.3| unnamed protein product [Vitis vinifera]
Length = 196
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 61 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 120
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGAR------GRGGRGGRGGGRG 113
+ID R R+ G G R G GR +G GRG
Sbjct: 121 ------VIDKVQEETKNRADRKPPGVGRGRGRGREDGSSGRPAKGIGRG 163
>gi|50290335|ref|XP_447599.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526909|emb|CAG60536.1| unnamed protein product [Candida glabrata]
Length = 133
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 13/91 (14%)
Query: 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTV-------------KMTVKGKE 48
NFL KL ++ VT+EL+NG+ V+G + V N +L+ ++T +
Sbjct: 7 NFLRKLQNQYVTLELQNGSTVYGMVISVSPHSNVNLRDATLDRYYNSDSVYSEVTPQPIS 66
Query: 49 PTTLDSISLRGNNIRYYILPDSLPLETLLID 79
+ L +I+++ IR ILPDSL L+++L++
Sbjct: 67 TSHLKNINVKECFIRQVILPDSLDLDSILVN 97
>gi|290983277|ref|XP_002674355.1| predicted protein [Naegleria gruberi]
gi|284087945|gb|EFC41611.1| predicted protein [Naegleria gruberi]
Length = 134
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE +++E K+G G + + +MN L V +T + + + ++++ +RG+
Sbjct: 9 IKLLHEAESHIISLETKSGELYRGKLIEAEDSMNVQLVDVTVTHRNGQQSAMNTVYIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRG 113
IRY++LPD ++ AP K + +G G G G + RG G G
Sbjct: 69 KIRYFVLPD-------ILQKAPMFKVVDSTVKGQGRG--YGSQTKVHRGSGLG 112
>gi|332028955|gb|EGI68973.1| Small nuclear ribonucleoprotein Sm D3 [Acromyrmex echinatior]
Length = 142
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 22/136 (16%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE +T E G G + + MN ++ + +T + + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGQVGQLENVYIRGS 66
Query: 61 NIRYYILPDSL---PL---------------ETLLIDDAPRSKGKRDSRRGGGAGGARGR 102
IR+ ILPD L P+ ++ ++ R +G+ ++RG G G A
Sbjct: 67 KIRFLILPDMLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRGKGTGSAPWL 126
Query: 103 GGRGGRGGGRGGRGRG 118
+ GG + GRGRG
Sbjct: 127 NQQNQPGGSQPGRGRG 142
>gi|301108107|ref|XP_002903135.1| small nuclear ribonucleoprotein Sm D3 [Phytophthora infestans
T30-4]
gi|262097507|gb|EEY55559.1| small nuclear ribonucleoprotein Sm D3 [Phytophthora infestans
T30-4]
Length = 113
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+ L HE TVTIELKNG G + + +MN L V +T + + + L+ + +RG+
Sbjct: 9 ISLLHEGEGRTVTIELKNGEVYRGHLTESEDSMNCQLSDVVLTQRDGQKSKLELVYVRGS 68
Query: 61 NIRYYILPDSL 71
I+ ILPD L
Sbjct: 69 QIKLVILPDIL 79
>gi|296422411|ref|XP_002840754.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636977|emb|CAZ84945.1| unnamed protein product [Tuber melanosporum]
Length = 79
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 33 MNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRR 92
MN L+ + +T + + LD + +RG+++R++I+PD L + A R +G +R
Sbjct: 1 MNVQLRDITVTARDGRVSHLDQVYIRGSHVRFFIVPDMLRNAPMFRSRAVRGRGVGLARG 60
Query: 93 GGGAGGARGRGGRGGRG 109
ARG+ RGGRG
Sbjct: 61 RATVNRARGQQNRGGRG 77
>gi|145347482|ref|XP_001418193.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578422|gb|ABO96486.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 115
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +GT+ D MN HLK V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMAECYVRGNTIKYVCVPDEV 75
>gi|111226987|ref|XP_001134627.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|90971301|gb|EAS66961.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 146
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT+ELKNG GT+ + MN +K + +T + + ++ +RG+
Sbjct: 7 VKILHEADGHIVTVELKNGELYRGTLIESEDNMNCRMKNITVTARDGRNSQMEYCYVRGS 66
Query: 61 NIRYYILPDSL 71
+R+ ILPD L
Sbjct: 67 KVRFIILPDIL 77
>gi|50555508|ref|XP_505162.1| YALI0F08459p [Yarrowia lipolytica]
gi|49651032|emb|CAG77969.1| YALI0F08459p [Yarrowia lipolytica CLIB122]
Length = 99
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 8/84 (9%)
Query: 7 LSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLRGNNIRY 64
++HE +T+ELKN Q+ G ++ VD MN L+ V + K P T + + +RG+ +RY
Sbjct: 11 VNHE-ITVELKNDLQIRGILKSVDQFMNIKLENVTTVEEDKFPHLTAVRDLFIRGSVVRY 69
Query: 65 YILPDSLP--LETLLIDDAPRSKG 86
LP P ++T L++DA R +
Sbjct: 70 VHLP---PGAVDTTLLEDATRREA 90
>gi|159476634|ref|XP_001696416.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
gi|158282641|gb|EDP08393.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
Length = 134
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
V +ELKNG +G +Q D MN HL V T K G+ + +RGN I+Y +P+
Sbjct: 15 VLVELKNGETYNGYLQHCDTWMNLHLSEVICTSKDGQRFFKMPEAYIRGNTIKYISVPEE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGA 96
++D +RD +R A
Sbjct: 75 ------VVDKVQEENLRRDEKRPTVA 94
>gi|115443639|ref|NP_001045599.1| Os02g0102700 [Oryza sativa Japonica Group]
gi|41052905|dbj|BAD07817.1| putative small nuclear ribonucleoprotein polypeptide D3 [Oryza
sativa Japonica Group]
gi|41053239|dbj|BAD08200.1| putative small nuclear ribonucleoprotein polypeptide D3 [Oryza
sativa Japonica Group]
gi|113535130|dbj|BAF07513.1| Os02g0102700 [Oryza sativa Japonica Group]
gi|215692366|dbj|BAG87786.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692586|dbj|BAG88006.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737277|dbj|BAG96206.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189864|gb|EEC72291.1| hypothetical protein OsI_05466 [Oryza sativa Indica Group]
gi|222621997|gb|EEE56129.1| hypothetical protein OsJ_05002 [Oryza sativa Japonica Group]
Length = 132
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK G G++ + N L + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLDNITFTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAG 97
+R+ I+PD ++ +AP K RG G+
Sbjct: 69 RVRFMIIPD-------MLKNAPMFKRLEARIRGKGSA 98
>gi|384254045|gb|EIE27519.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 117
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
V +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 VLVELKNGETYNGHMVQCDSWMNVHLREVICTSKDGDRFWRIPETYIRGNTIKYLRVPDE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGA 96
+ID KRD +R A
Sbjct: 75 ------VIDKVKEENYKRDEKRPAMA 94
>gi|195051225|ref|XP_001993055.1| GH13613 [Drosophila grimshawi]
gi|193900114|gb|EDV98980.1| GH13613 [Drosophila grimshawi]
Length = 155
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 18/144 (12%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + +ELKNG +G + D MN +L+ V T K G + +RG
Sbjct: 4 LSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRG--- 116
+ I+Y +PD + ++ + D +S+ + + + G ++ + R R G R G G
Sbjct: 64 STIKYLRIPDEV-IDMVKEDAQAKSRNRAEMNKNRGGNSSQNQNQRAPRSGNRNGFGVRN 122
Query: 117 -------------RGGPRGRGGPP 127
R GP G+G P
Sbjct: 123 GPGGGGGLGNGNMRPGPSGQGNRP 146
>gi|307107546|gb|EFN55788.1| hypothetical protein CHLNCDRAFT_22901 [Chlorella variabilis]
Length = 132
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
V IELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 VLIELKNGETYNGHMVQCDTWMNIHLREVICTSKDGDRFWRMPEAYIRGNTIKYLRVPDE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRR 92
++D A + +RD +R
Sbjct: 75 ------VLDKAKEADFRRDEKR 90
>gi|125543063|gb|EAY89202.1| hypothetical protein OsI_10698 [Oryza sativa Indica Group]
gi|125585557|gb|EAZ26221.1| hypothetical protein OsJ_10089 [Oryza sativa Japonica Group]
Length = 134
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK G G + + N L + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
+R+ I+PD ++ +AP KR R G G A G G
Sbjct: 69 RVRFMIIPD-------MLKNAPMF--KRLEARIRGKGSAIGVG 102
>gi|449302555|gb|EMC98564.1| hypothetical protein BAUCODRAFT_137738 [Baudoinia compniacensis
UAMH 10762]
Length = 116
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
VT+E+ +G G + + MN L+ + +T + T LD + +RG+++R +I+PD
Sbjct: 20 VTVEIDSGQTYRGKLIEAEDNMNCQLENINVTQRDGRVTHLDRVYIRGSHVRLFIVPD-- 77
Query: 72 PLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
++ +AP + + + +G G G ARGR
Sbjct: 78 -----MLRNAPMFRQR--ANKGRGVGLARGRA 102
>gi|384497172|gb|EIE87663.1| hypothetical protein RO3G_12374 [Rhizopus delemar RA 99-880]
Length = 119
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 40/138 (28%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE +++ELK G G + L+ + +T + + LD + +RG+
Sbjct: 7 IKLLHEAQGHIISLELKTGQLYRGKL----------LEDITVTARDGRVSQLDQVYIRGS 56
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG----------GRGGRGG 110
++R++I+PD ++ +AP KG G GG +GRG R +
Sbjct: 57 HVRFFIVPD-------MLKNAPMFKG-------AGPGGLKGRGIGLGRGRATVARAQQAR 102
Query: 111 GRGGRGRGGPRGRGGPPR 128
GRG RG RGRGGPPR
Sbjct: 103 GRGMRGTF--RGRGGPPR 118
>gi|115451821|ref|NP_001049511.1| Os03g0240800 [Oryza sativa Japonica Group]
gi|108707095|gb|ABF94890.1| Small nuclear ribonucleoprotein Sm D3, putative, expressed [Oryza
sativa Japonica Group]
gi|113547982|dbj|BAF11425.1| Os03g0240800 [Oryza sativa Japonica Group]
gi|215686515|dbj|BAG87776.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765251|dbj|BAG86948.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768316|dbj|BAH00545.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 132
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK G G + + N L + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAG 97
+R+ I+PD ++ +AP K RG G+
Sbjct: 69 RVRFMIIPD-------MLKNAPMFKRLEARIRGKGSA 98
>gi|359491835|ref|XP_002270532.2| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Vitis
vinifera]
gi|297745546|emb|CBI40711.3| unnamed protein product [Vitis vinifera]
Length = 132
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G G + + N L+++ T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKSGELYRGNMIECEDNWNCQLESITFTGKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
+R+ ++PD ++ +AP KR R G G A G G
Sbjct: 69 KVRFMVIPD-------MLKNAPMF--KRLDARIKGKGSALGVG 102
>gi|297839503|ref|XP_002887633.1| hypothetical protein ARALYDRAFT_476783 [Arabidopsis lyrata subsp.
lyrata]
gi|297333474|gb|EFH63892.1| hypothetical protein ARALYDRAFT_476783 [Arabidopsis lyrata subsp.
lyrata]
Length = 129
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE+ V++E+K+G G++ + N L+ + K + + L+ + +RG+
Sbjct: 9 VKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYKAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
+R+ ++PD ++ +AP K R + G RGRG
Sbjct: 69 LVRFIVIPD-------MLKNAPMFKDVRGKGKSSSLGVGRGRGA 105
>gi|225437330|ref|XP_002264738.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 150
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGAR------GRGGRGGRGGGRG 113
+ID R R+ G G R G GR +G GRG
Sbjct: 75 ------VIDKVQEETKNRADRKPPGVGRGRGRGREDGSSGRPAKGIGRG 117
>gi|195384890|ref|XP_002051145.1| GJ13818 [Drosophila virilis]
gi|194147602|gb|EDW63300.1| GJ13818 [Drosophila virilis]
Length = 140
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +L+ V T K G + +RG+ I+Y +PD
Sbjct: 1 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECFIRGSTIKYLRIPDE 60
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRG 116
+ ++ + D +S+ + + + G ++ + R R G R G
Sbjct: 61 V-IDMVKEDAQAKSRNRAEMNKNRGGNSSQNQNQRAPRSGNRNSFG 105
>gi|401411081|ref|XP_003884988.1| hypothetical protein NCLIV_053870 [Neospora caninum Liverpool]
gi|325119407|emb|CBZ54960.1| hypothetical protein NCLIV_053870 [Neospora caninum Liverpool]
Length = 132
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL +E TVT+E+K+G G ++ + MN L+TV +T + +L+ + +RG+
Sbjct: 8 VKLLYEGLGHTVTVEIKSGEVYRGVLENAEDNMNCLLQTVTVTHRDGRVVSLEQVYIRGS 67
Query: 61 NIRYYILPDSL 71
+++ + PD L
Sbjct: 68 QVKFIVFPDML 78
>gi|148909638|gb|ABR17910.1| unknown [Picea sitchensis]
Length = 133
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 15/106 (14%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+ELK+G G + + N L+ + T K + + L+ + +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKSGELYRGNMIECEDNWNCQLEGITYTAKDGKVSQLEHVFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSR---RGGGAGGARGRG 103
+R+ ++PD ++ +AP + + D+R RG G RGR
Sbjct: 69 KVRFMVIPD-------MLRNAPMFR-RLDARIKGRGSSLGVGRGRA 106
>gi|254570317|ref|XP_002492268.1| hypothetical protein [Komagataella pastoris GS115]
gi|238032066|emb|CAY69988.1| Hypothetical protein PAS_chr3_0060 [Komagataella pastoris GS115]
Length = 86
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNN 61
FL +++ E V +++++GT+ HG +Q +D MN L+ KG+ T + +RG N
Sbjct: 10 EFLSRITGEKVVVKMRDGTECHGALQSIDGFMNVALENTVGKYKGETTKTYGDVFIRGTN 69
Query: 62 IRYYILPDSLPLETLL 77
+Y +L S+ LE LL
Sbjct: 70 GKYSLLS-SILLERLL 84
>gi|225684632|gb|EEH22916.1| U6 snRNP-associated protein Lsm4 [Paracoccidioides brasiliensis
Pb03]
gi|226286829|gb|EEH42342.1| small nuclear ribonucleoprotein [Paracoccidioides brasiliensis
Pb18]
Length = 124
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLK-TVKMTVKGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V+ T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLILKEVVQTTPEGDRFFRLPEVYVRGNNIKYLRVPEE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGR 105
++D A + + S RG G+ R GR
Sbjct: 75 ------IVDIAKDQQQNQPSNRGRGSQQHRVDSGR 103
>gi|449542283|gb|EMD33263.1| hypothetical protein CERSUDRAFT_87573 [Ceriporiopsis subvermispora
B]
Length = 132
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRG 59
++ L ++ + +ELKNG +G + D MN L+ V T +G L +RG
Sbjct: 4 LSLLNAAQNKPMLVELKNGETFNGHLINCDNFMNITLREVYQTSAEGDRFWKLKECYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGA--GGARGRG--GRGGRG 109
+ I+Y +PD+L + ++ R++ S RG GARGRG RGGRG
Sbjct: 64 STIKYLRVPDTLL--DAVKEEQNRAREAGRSARGAHVSGAGARGRGMPTRGGRG 115
>gi|332028142|gb|EGI68193.1| Small nuclear ribonucleoprotein Sm D3 [Acromyrmex echinatior]
Length = 141
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 23/125 (18%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE +T E G G + + MN ++ + +T + + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGQVGQLENVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRG-------GRGGGRG 113
IR+ ILPD ++ +AP K R GG G GRG GRG G+
Sbjct: 67 KIRFLILPD-------MLKNAPMFK-----RPGGKGSGTAGRGKSAILRAQARGRGRGQN 114
Query: 114 GRGRG 118
RG+G
Sbjct: 115 QRGKG 119
>gi|237829847|ref|XP_002364221.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|211961885|gb|EEA97080.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|221487294|gb|EEE25526.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii GT1]
gi|221507086|gb|EEE32690.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii VEG]
Length = 131
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL +E TVT+E+K+G G ++ + MN L+TV +T + +L+ + +RG+
Sbjct: 8 VKLLYEGLGHTVTVEIKSGEVYRGVLENAEDNMNCLLQTVTVTHRDGRVVSLEQVYIRGS 67
Query: 61 NIRYYILPDSL 71
+++ + PD L
Sbjct: 68 QVKFIVFPDML 78
>gi|148227688|ref|NP_001079359.1| uncharacterized protein LOC379046 [Xenopus laevis]
gi|27371312|gb|AAH40973.1| MGC52856 protein [Xenopus laevis]
gi|133736997|gb|AAI33764.1| MGC52856 protein [Xenopus laevis]
Length = 126
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
IR+ ILPD ++ +AP K ++ +G GAG RG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMKNKNQGSGAG--RGKAA 101
>gi|295674033|ref|XP_002797562.1| small nuclear ribonucleoprotein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226280212|gb|EEH35778.1| small nuclear ribonucleoprotein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 124
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLK-TVKMTVKGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V+ T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLILKEVVQTTPEGDRFFRLPEVYVRGNNIKYLRVPEE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGR 105
++D A + + S RG G+ R GR
Sbjct: 75 ------IVDLAKDQQQNQPSNRGRGSQQHRVDSGR 103
>gi|270008821|gb|EFA05269.1| hypothetical protein TcasGA2_TC015424 [Tribolium castaneum]
Length = 152
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 25/145 (17%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGS 66
Query: 61 NIRYYILPDSL---PLETLLIDDAPRSKGKRDSRRGGGAG------------GARGRG-- 103
IR+ ILPD L P+ +GK R G ARGRG
Sbjct: 67 KIRFLILPDMLKNAPMFKKQTKAGTAGRGKSAILRAQGLAVLRVEFWLIVFSAARGRGRG 126
Query: 104 ----GRGGRGGGRGGRGRGGPRGRG 124
RGGRGG G+G GRG
Sbjct: 127 ANPAVRGGRGGAWQAPGQGAAAGRG 151
>gi|221055864|ref|XP_002259070.1| U6 snRNA associated Sm-like protein Ls [Plasmodium knowlesi strain
H]
gi|193809141|emb|CAQ39843.1| U6 snRNA associated Sm-like protein Ls,putative [Plasmodium
knowlesi strain H]
Length = 126
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 4 LMKLSH-ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNN 61
L+K S + V +ELKNG G + D MN H+K + T K G + + +RGN+
Sbjct: 7 LLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGNS 66
Query: 62 IRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGGPR 121
++Y + D + I++ K + R GG G RG G GGRGG+ R G R
Sbjct: 67 VKYIRVQDEAIDQA--IEETNEQKARNIGRGRGGRGRGRGTGRGTDNRGGRGGQMRAGRR 124
Query: 122 G 122
G
Sbjct: 125 G 125
>gi|47211785|emb|CAF93753.1| unnamed protein product [Tetraodon nigroviridis]
Length = 127
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
IR+ ILPD ++ +AP K ++ +G GAG RG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMKNKNQGSGAG--RGKAA 101
>gi|348513729|ref|XP_003444394.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Oreochromis
niloticus]
Length = 127
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
IR+ ILPD ++ +AP K ++ +G GAG RG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMKNKNQGSGAG--RGKAA 101
>gi|4759160|ref|NP_004166.1| small nuclear ribonucleoprotein Sm D3 [Homo sapiens]
gi|13385598|ref|NP_080371.1| small nuclear ribonucleoprotein Sm D3 [Mus musculus]
gi|56119060|ref|NP_001007839.1| small nuclear ribonucleoprotein Sm D3 [Gallus gallus]
gi|62859245|ref|NP_001017093.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Xenopus
(Silurana) tropicalis]
gi|148230601|ref|NP_001084936.1| small nuclear ribonucleoprotein Sm D3 [Xenopus laevis]
gi|302563765|ref|NP_001180981.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|343478171|ref|NP_001230355.1| small nuclear ribonucleoprotein Sm D3 [Sus scrofa]
gi|73995845|ref|XP_849660.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Canis lupus
familiaris]
gi|109093572|ref|XP_001096170.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like isoform 1
[Macaca mulatta]
gi|109509970|ref|XP_001079870.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Rattus
norvegicus]
gi|126344584|ref|XP_001362481.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Monodelphis
domestica]
gi|149632566|ref|XP_001509901.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like
[Ornithorhynchus anatinus]
gi|149720126|ref|XP_001489110.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Equus
caballus]
gi|291412675|ref|XP_002722599.1| PREDICTED: small nuclear ribonucleoprotein polypeptide D3
[Oryctolagus cuniculus]
gi|296191500|ref|XP_002743645.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Callithrix
jacchus]
gi|297708452|ref|XP_002830980.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 1 [Pongo
abelii]
gi|301779389|ref|XP_002925102.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Ailuropoda
melanoleuca]
gi|332263674|ref|XP_003280877.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Nomascus
leucogenys]
gi|344294995|ref|XP_003419200.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Loxodonta
africana]
gi|348584590|ref|XP_003478055.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cavia
porcellus]
gi|392355294|ref|XP_003751996.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Rattus
norvegicus]
gi|395753126|ref|XP_003779546.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 2 [Pongo
abelii]
gi|395753128|ref|XP_003779547.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 3 [Pongo
abelii]
gi|395861839|ref|XP_003803182.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Otolemur
garnettii]
gi|397469575|ref|XP_003806425.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Pan paniscus]
gi|410055702|ref|XP_003953897.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 1 [Pan
troglodytes]
gi|410055704|ref|XP_003953898.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 2 [Pan
troglodytes]
gi|410976969|ref|XP_003994885.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Felis catus]
gi|426247570|ref|XP_004017554.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Ovis aries]
gi|426393867|ref|XP_004063231.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Gorilla gorilla
gorilla]
gi|51338667|sp|P62318.1|SMD3_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|54039609|sp|P62323.1|SMD3_XENLA RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|61246343|sp|P62320.1|SMD3_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|315583600|pdb|3PGW|Z Chain Z, Crystal Structure Of Human U1 Snrnp
gi|315583609|pdb|3PGW|W Chain W, Crystal Structure Of Human U1 Snrnp
gi|332639436|pdb|2Y9A|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639443|pdb|2Y9A|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639450|pdb|2Y9A|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639460|pdb|2Y9B|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639467|pdb|2Y9B|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639474|pdb|2Y9B|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639484|pdb|2Y9C|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639491|pdb|2Y9C|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639498|pdb|2Y9C|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639508|pdb|2Y9D|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639515|pdb|2Y9D|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639522|pdb|2Y9D|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|600750|gb|AAA57034.1| Sm D3 [Homo sapiens]
gi|12653375|gb|AAH00457.1| Small nuclear ribonucleoprotein D3 polypeptide 18kDa [Homo sapiens]
gi|12837822|dbj|BAB23963.1| unnamed protein product [Mus musculus]
gi|12839911|dbj|BAB24705.1| unnamed protein product [Mus musculus]
gi|12859667|dbj|BAB31729.1| unnamed protein product [Mus musculus]
gi|13111955|gb|AAH03150.1| Small nuclear ribonucleoprotein D3 polypeptide 18kDa [Homo sapiens]
gi|47122949|gb|AAH70616.1| MGC81359 protein [Xenopus laevis]
gi|47678697|emb|CAG30469.1| SNRPD3 [Homo sapiens]
gi|53130412|emb|CAG31535.1| hypothetical protein RCJMB04_7j2 [Gallus gallus]
gi|74227850|dbj|BAE35738.1| unnamed protein product [Mus musculus]
gi|89266931|emb|CAJ81806.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Xenopus
(Silurana) tropicalis]
gi|90085617|dbj|BAE91549.1| unnamed protein product [Macaca fascicularis]
gi|109451504|emb|CAK54613.1| SNRPD3 [synthetic construct]
gi|109452100|emb|CAK54912.1| SNRPD3 [synthetic construct]
gi|119580074|gb|EAW59670.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Homo sapiens]
gi|148699966|gb|EDL31913.1| small nuclear ribonucleoprotein D3, isoform CRA_b [Mus musculus]
gi|149043764|gb|EDL97215.1| rCG60635, isoform CRA_b [Rattus norvegicus]
gi|170285144|gb|AAI61305.1| hypothetical protein LOC549847 [Xenopus (Silurana) tropicalis]
gi|197129341|gb|ACH45839.1| putative small nuclear ribonucleoprotein D3 polypeptide 18 kDa
variant 2 [Taeniopygia guttata]
gi|197129342|gb|ACH45840.1| putative small nuclear ribonucleoprotein D3 polypeptide 18 kDa
variant 2 [Taeniopygia guttata]
gi|197129343|gb|ACH45841.1| putative small nuclear ribonucleoprotein D3 polypeptide 18 kDa
variant 2 [Taeniopygia guttata]
gi|197692199|dbj|BAG70063.1| small nuclear ribonucleoprotein polypeptide D3 [Homo sapiens]
gi|197692447|dbj|BAG70187.1| small nuclear ribonucleoprotein polypeptide D3 [Homo sapiens]
gi|208965532|dbj|BAG72780.1| small nuclear ribonucleoprotein D3 polypeptide [synthetic
construct]
gi|296478296|tpg|DAA20411.1| TPA: small nuclear ribonucleoprotein D3 polypeptide 18kDa [Bos
taurus]
gi|355563528|gb|EHH20090.1| hypothetical protein EGK_02876 [Macaca mulatta]
gi|355784846|gb|EHH65697.1| hypothetical protein EGM_02515 [Macaca fascicularis]
gi|380815844|gb|AFE79796.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815846|gb|AFE79797.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815848|gb|AFE79798.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815850|gb|AFE79799.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815852|gb|AFE79800.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|383420997|gb|AFH33712.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|384940658|gb|AFI33934.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|387018114|gb|AFJ51175.1| Small nuclear ribonucleoprotein D3 polypeptide [Crotalus
adamanteus]
gi|410211528|gb|JAA02983.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|410264204|gb|JAA20068.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|410264206|gb|JAA20069.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|410302836|gb|JAA30018.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|417395981|gb|JAA45024.1| Putative small nuclear ribonucleoprotein sm d3 [Desmodus rotundus]
gi|432095017|gb|ELK26406.1| Small nuclear ribonucleoprotein Sm D3 [Myotis davidii]
gi|449281570|gb|EMC88617.1| Small nuclear ribonucleoprotein Sm D3 [Columba livia]
Length = 126
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
IR+ ILPD ++ +AP K ++ +G GAG RG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMKNKNQGSGAG--RGKAA 101
>gi|298709378|emb|CBJ31311.1| Small nuclear ribonucleoprotein-associated protein D3 [Ectocarpus
siliculosus]
Length = 177
Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 11 TVTIELKNGTQVHGTIQGVDVAMNTHLK-TVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69
+T+ELKNG G + + +MN LK VK ++GK +TL + +RGN I + I+P+
Sbjct: 13 IITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKT-STLQQLYIRGNQIVFCIVPN 71
Query: 70 SL 71
L
Sbjct: 72 ML 73
>gi|294866382|ref|XP_002764688.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
gi|239864378|gb|EEQ97405.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
Length = 349
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
M+ L + + +ELKNG G + D MN H++ +T K G L +RG
Sbjct: 5 MSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIRG 64
Query: 60 NNIRYYILPD 69
N+I+Y +PD
Sbjct: 65 NHIKYLRIPD 74
>gi|430813206|emb|CCJ29431.1| unnamed protein product [Pneumocystis jirovecii]
Length = 639
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN LK V T G L +RG+ I+Y +PD +
Sbjct: 526 VELKNGETYNGHMVSCDTWMNLILKEVIQTNADGDRFFRLSECYIRGSTIKYLRIPDEII 585
Query: 73 LETLLIDDAPR-SKGKRDSRRGG-GAGGARGRG-----GRGGRGGGRGGRGRGG 119
L ++ R ++ +R RGG G RGRG GRGGR R GRGR G
Sbjct: 586 NIVKLQNEQNRDNRSQRGISRGGRGINLGRGRGMQNIQGRGGRTSDR-GRGRIG 638
>gi|308804932|ref|XP_003079778.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
gi|116058235|emb|CAL53424.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
Length = 779
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +GT+ D MN HLK V T K G ++ +RGN I+Y +PD +
Sbjct: 675 VELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMEECYVRGNTIKYVCVPDEV 733
>gi|225734040|pdb|3CW1|D Chain D, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734049|pdb|3CW1|S Chain S, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734058|pdb|3CW1|T Chain T, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734067|pdb|3CW1|U Chain U, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 126
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+ + +RG
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGC 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
IR+ ILPD ++ +AP K ++ +G GAG RG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMKNKNQGSGAG--RGKAA 101
>gi|15079335|gb|AAH11510.1| Small nuclear ribonucleoprotein D3 [Mus musculus]
Length = 126
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+ + +RG
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGR 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
IR+ ILPD ++ +AP K ++ +G GAG RG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMKNKNQGSGAG--RGKAA 101
>gi|147768838|emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
Length = 3804
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 3671 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE-- 3728
Query: 73 LETLLIDDAPRSKGKRDSRRGGGAGGAR------GRGGRGGRGGGRG 113
+ID R R+ G G R G GR +G GRG
Sbjct: 3729 ----VIDKVQEETKNRADRKPPGVGRGRGRGREDGSSGRPAKGIGRG 3771
>gi|302831786|ref|XP_002947458.1| hypothetical protein VOLCADRAFT_79613 [Volvox carteri f.
nagariensis]
gi|300267322|gb|EFJ51506.1| hypothetical protein VOLCADRAFT_79613 [Volvox carteri f.
nagariensis]
Length = 140
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
V +ELKNG +G +Q D MN HL V T K G+ + +RGN I+Y +P+
Sbjct: 15 VLVELKNGETYNGYLQQCDTWMNLHLSEVICTSKDGQRFFKMPEAYIRGNTIKYISVPEE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRR 92
+I KRD +R
Sbjct: 75 ------VIGKVQEENLKRDEKR 90
>gi|412992977|emb|CCO16510.1| U6 snRNA-associated Sm-like protein LSm4 [Bathycoccus prasinos]
Length = 122
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 4 LMKLSH-ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNN 61
L+K S ++ +ELKNG +G + D MN HL V T K G L++ +RGN
Sbjct: 6 LLKTSQGHSMLVELKNGETYNGVLNACDAWMNVHLTKVVCTNKDGDRFHELETCFIRGNT 65
Query: 62 IRYYILPDSLPLETLLIDDAPRSKGKRDSRRG 93
I+Y + + +I A +R ++RG
Sbjct: 66 IKYMCVQEE------IIQLAKEENERRAAQRG 91
>gi|118490850|ref|XP_001238734.1| small nuclear ribonucleoprotein (snrnp),putative [Eimeria tenella
strain Houghton]
gi|109238517|emb|CAK51481.1| small nuclear ribonucleoprotein (snrnp),putative [Eimeria
tenella]
Length = 125
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 11/91 (12%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE T+T+E K G+ GT++ + MN ++ V +T K + +L+ + +RG+
Sbjct: 11 VKLLHEGLGHTITVETKTGSLYRGTLENAEDNMNMLIQGVTVTHKDGKVLSLEQVYIRGS 70
Query: 61 NIRYYILPDSL---PLETLLIDDAPRSKGKR 88
++ I PD L P+ L A R KG+R
Sbjct: 71 QVQMVIFPDMLRHAPMFKL----ADRGKGRR 97
>gi|294933185|ref|XP_002780640.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239890574|gb|EER12435.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
Length = 120
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE TVT+E++ G G + + MN + V +T K + T+L+ +RG+
Sbjct: 8 IKLLHESVGHTVTVEMQTGELYRGHLIHTEDNMNLLIAEVVVTRKDGKQTSLEQAYIRGS 67
Query: 61 NIRYYILPDSL 71
IRY ++PD+L
Sbjct: 68 KIRYIVVPDNL 78
>gi|313220248|emb|CBY31107.1| unnamed protein product [Oikopleura dioica]
gi|313235868|emb|CBY11255.1| unnamed protein product [Oikopleura dioica]
Length = 162
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE TVT+E G G + + MN L+ V T + L +I +RG+
Sbjct: 7 VKVLHEAEGHTVTVESATGELYRGVLIEAEDNMNMQLRDVSATYRDGRSAHLSNIFIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSR--RGGGAGGARG 101
+R+ ILPD ++ +AP + S+ RG G G RG
Sbjct: 67 QVRFAILPD-------MLKNAPMLNVDKKSKQPRGLGRGAFRG 102
>gi|221131194|ref|XP_002165640.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Hydra
magnipapillata]
Length = 130
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT+E G G + + MN L + MT + + L+ I +RG+
Sbjct: 9 IKVLHEAEGHIVTLETLTGEVYRGKLLEAEDNMNCQLTHITMTARDGKVAQLEQIFIRGS 68
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
IR+ ILPD ++ +AP K S++ G G RG+
Sbjct: 69 KIRFVILPD-------MLKNAPMFKKMLVSQKNTGVG--RGKSA 103
>gi|320165991|gb|EFW42890.1| small nuclear ribonucleoprotein Sm D3 [Capsaspora owczarzaki ATCC
30864]
Length = 135
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VTIELK G + V+ MN L+ + T + + + L + +RG+
Sbjct: 7 IKVLHEAVGHIVTIELKTSEVYRGKLFQVEDNMNCQLEDITFTSRDGQVSRLQQVYIRGS 66
Query: 61 NIRYYILPDSL 71
+R++I+PD +
Sbjct: 67 KVRFFIVPDMI 77
>gi|303279759|ref|XP_003059172.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459008|gb|EEH56304.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 129
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN HLK V T K G + + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVSCDTWMNVHLKEVICTSKDGDRFWRMANCYVRGNTIKYVCVPDEV 75
>gi|346321072|gb|EGX90672.1| tRNA methyltransferase subunit GCD14, putative [Cordyceps militaris
CM01]
Length = 712
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 8 SHETVTIELKNGTQVHGTIQGVDVA---MNTHLKTVKMTVKGKEPTTLDSISLRGNNIRY 64
+H V +L + T VA MN LK + +T + + LD + +RG+++R+
Sbjct: 609 AHYMVATQLARNRESTVTNSACRVAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRF 668
Query: 65 YILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
+I+PD ++ +AP + + RG G G ARGR
Sbjct: 669 FIVPD-------MLRNAPMFRSS--NLRGRGVGMARGRA 698
>gi|391342640|ref|XP_003745624.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Metaseiulus
occidentalis]
Length = 138
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE +T E G G + + MN H++ + +T + + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETNTGEVYRGKLVEAEDNMNCHMQGITVTYRDGSTSQLENVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
IR+ ILPD ++ +AP K+ +G G A GRG
Sbjct: 67 KIRFLILPD-------MLKNAPMF--KKPPGKGMQTGAAAGRG 100
>gi|357129770|ref|XP_003566534.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Brachypodium distachyon]
gi|326528247|dbj|BAJ93305.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 142
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN HL+ V T K G + + +RGN I+Y +PD
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE-- 74
Query: 73 LETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRG 113
+ID K R R+ G G RGRG G + GGRG
Sbjct: 75 ----VIDKVQEETSKSRSDRKPPGVGRGRGRGDIGTKPGGRG 112
>gi|326516310|dbj|BAJ92310.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326521472|dbj|BAK00312.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 143
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN HL+ V T K G + + +RGN I+Y +PD
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE-- 74
Query: 73 LETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRG 113
+ID K R R+ G G RGRG G + GGRG
Sbjct: 75 ----VIDKVQEETSKSRSDRKPPGVGRGRGRGDIGTKPGGRG 112
>gi|238231831|ref|NP_001154102.1| Small nuclear ribonucleoprotein Sm D3 [Oncorhynchus mykiss]
gi|209734524|gb|ACI68131.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
gi|225704048|gb|ACO07870.1| Small nuclear ribonucleoprotein Sm D3 [Oncorhynchus mykiss]
Length = 128
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+ + +RG+
Sbjct: 7 IKILHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTHRDGRVAQLEQVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
IR+ ILPD ++ +AP K ++ +G GAG RG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMKNKNQGTGAG--RGKAA 101
>gi|324540294|gb|ADY49583.1| Small nuclear ribonucleoprotein Sm D3, partial [Ascaris suum]
Length = 143
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT+E G G + + MN + V +T + LD++ +RG+
Sbjct: 8 IKILHEAEGHIVTLETTIGEVYRGKLIEAEDNMNCQMSDVNVTYRDGRTHQLDNVFIRGS 67
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGGP 120
IR+ ILPD L +AP K R + G G G G GR
Sbjct: 68 KIRFMILPDMLK-------NAPMFKNI-----------GRAQKGAVGMGMGDNRDGRAAF 109
Query: 121 RGRG 124
RGRG
Sbjct: 110 RGRG 113
>gi|209732182|gb|ACI66960.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 128
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + G + MN + + +T + L+ + +RG+
Sbjct: 7 IKILHEAEGHIVTGETNTGEVYRGKLIGAEDNMNCQMSNITVTHRDGRVAQLEQVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
IR+ ILPD ++ +AP K ++ +G GAG RG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMKNKNQGTGAG--RGKAA 101
>gi|449529475|ref|XP_004171725.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 71 L 71
+
Sbjct: 75 V 75
>gi|293335959|ref|NP_001170512.1| uncharacterized LOC100384520 [Zea mays]
gi|238005774|gb|ACR33922.1| unknown [Zea mays]
gi|413947013|gb|AFW79662.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|414876859|tpg|DAA53990.1| TPA: U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN HL+ V T K G + + +RGN I+Y +PD
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE-- 74
Query: 73 LETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRG 113
+ID K R R+ G G RGRG G + GGRG
Sbjct: 75 ----VIDKVQEETSKSRSDRKPPGVGRGRGRGDVGAKPGGRG 112
>gi|77745469|gb|ABB02633.1| glycine rich protein-like [Solanum tuberosum]
gi|82623401|gb|ABB87115.1| glycine rich protein-like [Solanum tuberosum]
Length = 147
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 71 LPLETLLIDDAPRSKGKRD-----SRRGGGAGGARGRGGRGGRGGGRG 113
+ + + + +S+G R R G G G GR +G GRG
Sbjct: 75 VIDK---VQEETKSRGDRKPPGVGGRGRGRGGRDEGAAGRQAKGIGRG 119
>gi|294874372|ref|XP_002766923.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|294881753|ref|XP_002769480.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239868298|gb|EEQ99640.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239872939|gb|EER02198.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
Length = 119
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE TVT+E++ G G + + MN + V +T + + T+L+ +RG+
Sbjct: 8 IKLLHESVGHTVTVEMQTGELYRGHLIHTEDNMNLLIAEVVVTRRDGKQTSLEQAYIRGS 67
Query: 61 NIRYYILPDSL 71
IRY ++PD+L
Sbjct: 68 KIRYIVVPDNL 78
>gi|449526219|ref|XP_004170111.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 71 L 71
+
Sbjct: 75 V 75
>gi|147809809|emb|CAN60390.1| hypothetical protein VITISV_006493 [Vitis vinifera]
Length = 133
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE V +ELK+G G++ N L+ + TVK + + L+ + +RG
Sbjct: 10 VKLLHEAAGHVVXVELKSGELYRGSMIECKDNWNCQLENITFTVKDGKVSQLEHVFIRGI 69
Query: 61 NIRYYILPD 69
+R+ ++PD
Sbjct: 70 KVRFMVIPD 78
>gi|414876860|tpg|DAA53991.1| TPA: hypothetical protein ZEAMMB73_426325 [Zea mays]
Length = 172
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN HL+ V T K G + + +RGN I+Y +PD
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE-- 74
Query: 73 LETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRG 113
+ID K R R+ G G RGRG G + GGRG
Sbjct: 75 ----VIDKVQEETSKSRSDRKPPGVGRGRGRGDVGAKPGGRG 112
>gi|255081394|ref|XP_002507919.1| predicted protein [Micromonas sp. RCC299]
gi|226523195|gb|ACO69177.1| predicted protein [Micromonas sp. RCC299]
Length = 123
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE TVTIELK G GT+ + N L+ + T + L+++ +RG+
Sbjct: 13 VKLLHEAEGHTVTIELKTGDTYRGTLLEAEDNWNCQLEGITHTGRDGRVNQLENVYVRGS 72
Query: 61 NIRYYILPDSL 71
IR+ I+PD L
Sbjct: 73 KIRFLIIPDML 83
>gi|71020725|ref|XP_760593.1| hypothetical protein UM04446.1 [Ustilago maydis 521]
gi|46100481|gb|EAK85714.1| hypothetical protein UM04446.1 [Ustilago maydis 521]
Length = 146
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTV-KMTVKGKEPTTLDSISLRG 59
++ L ++ + +ELKNG+ +G + D MN L+ V + + G++ +RG
Sbjct: 4 LSLLNAAQNKPMLVELKNGSTFNGHLVACDNFMNLTLREVYETSASGEQFWKQKECYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARG---------------RGG 104
+ I+Y + DS+ + ++ R + ++ +GGA RG
Sbjct: 64 STIKYCRVADSVIDQVRQREEQARKQRQQSGSSANVSGGANSANRAGAANGARGAYTRGA 123
Query: 105 RGGRGGGRGGRG-RGGPRGRG 124
RGG RG RG G RGRG
Sbjct: 124 RGG-TADRGARGTNAGARGRG 143
>gi|313214383|emb|CBY42774.1| unnamed protein product [Oikopleura dioica]
Length = 137
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE TVT+E G G + + MN L+ V T + L +I +RG+
Sbjct: 7 VKVLHEAEGHTVTVESATGELYRGVLIEAEDNMNMQLRDVSATYRDGRSAHLSNIFIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSR--RGGGAGGARG 101
+R+ ILPD ++ +AP + S+ RG G G RG
Sbjct: 67 QVRFAILPD-------MLKNAPMLNVDKKSKQPRGLGRGAFRG 102
>gi|333656534|gb|AEF68170.1| Sm-D3-like protein [Physarum polycephalum]
Length = 134
Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VTIELK G G + + MN L + +T + + L+ +RG+
Sbjct: 7 IKLLHEAEGHIVTIELKTGEVYRGQLIESEDNMNCQLGNITLTARDGRISNLEHAYVRGS 66
Query: 61 NIRYYILPDSL 71
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|389743937|gb|EIM85121.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 130
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRG 59
++ L ++ + +ELKNG +G + D MN L+ V T G+ + +RG
Sbjct: 4 LSLLNAAQNKPMLVELKNGENFNGHLVNCDNFMNITLREVYQTSADGERFWKVKECYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
+ I+Y +P++L ++ ++ R++ S+RGG RGRGG
Sbjct: 64 STIKYIRVPETLL--DVVKEEQLRAREAGKSQRGGLNDRGRGRGG 106
>gi|294932805|ref|XP_002780450.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239890384|gb|EER12245.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 126
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
M+ L + + +ELKNG G + D MN H++ +T K G L +RG
Sbjct: 5 MSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIRG 64
Query: 60 NNIRYYILPD 69
N+++Y +PD
Sbjct: 65 NHVKYLRIPD 74
>gi|154311062|ref|XP_001554861.1| hypothetical protein BC1G_06649 [Botryotinia fuckeliana B05.10]
Length = 690
Score = 42.7 bits (99), Expect = 0.050, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLK-TVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELK+G ++G + D MN LK V+ + G + T L I ++GNNI+Y +PD +
Sbjct: 18 VELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYVKGNNIKYLRMPDEI 76
>gi|218187914|gb|EEC70341.1| hypothetical protein OsI_01238 [Oryza sativa Indica Group]
Length = 147
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ V T K G + + +RGN I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE 74
Query: 71 L 71
+
Sbjct: 75 V 75
>gi|242056887|ref|XP_002457589.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
gi|241929564|gb|EES02709.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
Length = 145
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN HL+ V T K G + + +RGN I+Y +PD
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE-- 74
Query: 73 LETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRG 113
+ID K R R+ G G RGRG G + GGRG
Sbjct: 75 ----VIDKVQEETSKSRSDRKPPGVGRGRGRGDVGTKPGGRG 112
>gi|409080918|gb|EKM81278.1| hypothetical protein AGABI1DRAFT_112946 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197836|gb|EKV47763.1| hypothetical protein AGABI2DRAFT_192916 [Agaricus bisporus var.
bisporus H97]
Length = 131
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRG 59
++ L ++ + +ELKNG +G + D MN L+ V T G L +RG
Sbjct: 4 LSLLSAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSADGDRFWKLKECYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGG 107
+ I+Y +PD+L + + ++ R++ + RGG G RGGRG
Sbjct: 64 STIKYLRVPDTLLDQ--VKEEQNRAREANRNSRGGHTGP--NRGGRGA 107
>gi|115435742|ref|NP_001042629.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|12230291|sp|Q9LGE6.1|LSM4_ORYSJ RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|9711887|dbj|BAB07978.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|108792648|dbj|BAE95809.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|113532160|dbj|BAF04543.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|215704752|dbj|BAG94780.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618133|gb|EEE54265.1| hypothetical protein OsJ_01157 [Oryza sativa Japonica Group]
Length = 147
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN HL+ V T K G + + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEV 75
>gi|168013104|ref|XP_001759241.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689554|gb|EDQ75925.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 181
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRR 92
+ID KR R+
Sbjct: 75 ------VIDKVQEETVKRSDRK 90
>gi|82913333|ref|XP_728601.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485036|gb|EAA20166.1| Sm protein, putative [Plasmodium yoelii yoelii]
Length = 130
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 26/131 (19%)
Query: 4 LMKLSH-ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNN 61
L+K S + V +ELKNG G + D MN H+K + T K G + + +RG++
Sbjct: 5 LLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGSS 64
Query: 62 IRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARG----------------RGGR 105
++Y + D I++A ++ SR G G RGGR
Sbjct: 65 VKYIRVQDQ------AIENAIEETAEQKSRNAGRGRGGVRGSGRNRGRGFGRGTDKRGGR 118
Query: 106 GG--RGGGRGG 114
GG R GRGG
Sbjct: 119 GGNIRAAGRGG 129
>gi|297812937|ref|XP_002874352.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
gi|297320189|gb|EFH50611.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE-- 74
Query: 73 LETLLIDDAPRSKGKRDSR 91
+ID K + D +
Sbjct: 75 ----VIDKVQEEKSRTDRK 89
>gi|256083180|ref|XP_002577827.1| U6 snrna-associated sm-like protein lsm4 [Schistosoma mansoni]
gi|360044788|emb|CCD82336.1| U6 snrna-associated sm-like protein lsm4 [Schistosoma mansoni]
Length = 142
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELK+G +G + D MN HLK V T + G + +RG+ I+Y +PD
Sbjct: 15 MLVELKSGETYNGHLVACDDWMNIHLKEVICTSRDGDRFWKMPECYIRGSIIKYLRIPDD 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGGPRGRGG 125
+ID K K D + A+ R GRGG R RGRGG
Sbjct: 75 ------VID-----KVKEDLQL------AKMRNRSQSADTGRGGFHRNKARGRGG 112
>gi|240275971|gb|EER39484.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325093332|gb|EGC46642.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H88]
Length = 124
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARG 101
++D A + + S R G+ RG
Sbjct: 75 ------VVDLAKDQQQNQSSNRTRGSQQHRG 99
>gi|443687679|gb|ELT90579.1| hypothetical protein CAPTEDRAFT_221674 [Capitella teleta]
Length = 135
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E +G G + + MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETTSGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLENVFIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
IR+ ILPD ++ +AP KR +GG G GRG
Sbjct: 67 KIRFLILPD-------MLKNAPMF--KRVVGKGGHPGATAGRG 100
>gi|195655461|gb|ACG47198.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN HL+ V T K G + + RGN I+Y +PD
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYXRGNTIKYLRVPDE-- 74
Query: 73 LETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRG 113
+ID K R R+ G G RGRG G + GGRG
Sbjct: 75 ----VIDKVQEETSKSRSDRKPPGVGRGRGRGDVGAKPGGRG 112
>gi|226491554|ref|NP_001152235.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|195654155|gb|ACG46545.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN HL+ V T K G + + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEV 75
>gi|225563373|gb|EEH11652.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus G186AR]
Length = 124
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARG 101
++D A + + S R G+ RG
Sbjct: 75 ------VVDLAKDQQQNQSSNRTRGSQQHRG 99
>gi|154281997|ref|XP_001541811.1| hypothetical protein HCAG_03909 [Ajellomyces capsulatus NAm1]
gi|150411990|gb|EDN07378.1| hypothetical protein HCAG_03909 [Ajellomyces capsulatus NAm1]
Length = 124
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARG 101
++D A + + S R G+ RG
Sbjct: 75 ------VVDLAKDQQQNQSSNRTRGSQQHRG 99
>gi|225450786|ref|XP_002283804.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 149
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 71 L 71
+
Sbjct: 75 V 75
>gi|303273780|ref|XP_003056242.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462326|gb|EEH59618.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 122
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VTIELKNG GT+ + N L+ + T + L+ +RG+
Sbjct: 13 VKLLHEAEGHTVTIELKNGETYRGTLLESEDNWNCQLEGITQTGRDGRVNQLEHAYIRGS 72
Query: 61 NIRYYILPDSL 71
IR+ ++PD L
Sbjct: 73 KIRFLVIPDML 83
>gi|393905582|gb|EFO18954.2| hypothetical protein LOAG_09541 [Loa loa]
Length = 135
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELK+G +G + D MN HL+ T + G + + +RG
Sbjct: 5 LSLLRTAQNHPMLVELKSGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYVRG 64
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRG----GGAGGARGRGGRGGRGGGRGGR 115
+ I+Y +PD + +E + + + ++D +R GA G G RG GRGG
Sbjct: 65 STIKYLRIPDDV-VELVKEEVKEVRRQQKDQQRAKRNLQGARGGARGGSSSNRGTGRGGS 123
Query: 116 GRGGPRGRGG 125
G R + G
Sbjct: 124 QHGWNRNKAG 133
>gi|194753313|ref|XP_001958958.1| GF12297 [Drosophila ananassae]
gi|190620256|gb|EDV35780.1| GF12297 [Drosophila ananassae]
Length = 151
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE +T E G G + + MN + + +T + +L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTASLENVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
IR+ ILPD ++ +AP K + G G GG GRG
Sbjct: 67 KIRFLILPD-------MLKNAPMFK----KQTGKGLGGTAGRG 98
>gi|302814278|ref|XP_002988823.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
gi|300143394|gb|EFJ10085.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
Length = 180
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 4 LMKLSH-ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP----TTLDSISLR 58
L+K +H + +ELKNG +G + D MN HL+ V T K + + +R
Sbjct: 6 LLKTAHGHPMLVELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRMPECYIR 65
Query: 59 GNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRR 92
GN I+Y +PD + D + + KR R+
Sbjct: 66 GNTIKYLRVPDE-------VIDKVQEETKRSDRK 92
>gi|356572732|ref|XP_003554520.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 148
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 71 L 71
+
Sbjct: 75 V 75
>gi|296089694|emb|CBI39513.3| unnamed protein product [Vitis vinifera]
Length = 162
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 28 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 87
Query: 71 L 71
+
Sbjct: 88 V 88
>gi|255564128|ref|XP_002523061.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
gi|223537623|gb|EEF39246.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
Length = 147
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 71 L 71
+
Sbjct: 75 V 75
>gi|298714042|emb|CBJ27274.1| Small nuclear ribonucleoprotein-associated protein D3 [Ectocarpus
siliculosus]
Length = 113
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+E+KNG G + + MN + V MT + + L+ + LRG+
Sbjct: 8 IKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGS 67
Query: 61 NIRYYILPDSL 71
+I+ +LPD L
Sbjct: 68 HIKLVVLPDVL 78
>gi|405976315|gb|EKC40827.1| Small nuclear ribonucleoprotein Sm D3 [Crassostrea gigas]
Length = 131
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+++ LRG+
Sbjct: 7 IKVLHEAEGHIVTCETTTGEVYRGKLVEAEDNMNCQMSAITVTYRDGRVAQLENVYLRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
IR+ ILPD ++ +AP K R G GG+ RG
Sbjct: 67 KIRFLILPD-------MLKNAPMFK------RVQGKGGSANRG 96
>gi|20260282|gb|AAM13039.1| unknown protein [Arabidopsis thaliana]
gi|22136528|gb|AAM91342.1| unknown protein [Arabidopsis thaliana]
Length = 129
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE-- 74
Query: 73 LETLLIDDAPRSKGKRDSR 91
+ID K + D +
Sbjct: 75 ----VIDKVQEEKTRTDRK 89
>gi|255629165|gb|ACU14927.1| unknown [Glycine max]
Length = 148
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|224064436|ref|XP_002301475.1| predicted protein [Populus trichocarpa]
gi|222843201|gb|EEE80748.1| predicted protein [Populus trichocarpa]
Length = 150
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query: 71 L 71
+
Sbjct: 75 V 75
>gi|15241028|ref|NP_198124.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
gi|332006335|gb|AED93718.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
Length = 129
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE-- 74
Query: 73 LETLLIDDAPRSKGKRDSR 91
+ID K + D +
Sbjct: 75 ----VIDKVQEEKTRTDRK 89
>gi|21593495|gb|AAM65462.1| glycine rich protein-like [Arabidopsis thaliana]
Length = 129
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE-- 74
Query: 73 LETLLIDDAPRSKGKRDSR 91
+ID K + D +
Sbjct: 75 ----VIDKVQEEKTRTDRK 89
>gi|24652901|ref|NP_725106.1| small ribonucleoprotein particle protein SmD3 [Drosophila
melanogaster]
gi|194883784|ref|XP_001975977.1| GG20251 [Drosophila erecta]
gi|195333626|ref|XP_002033491.1| GM21338 [Drosophila sechellia]
gi|195485512|ref|XP_002091120.1| GE12410 [Drosophila yakuba]
gi|195551839|ref|XP_002076307.1| GD15400 [Drosophila simulans]
gi|13124554|sp|O44437.1|SMD3_DROME RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|2708715|gb|AAB92621.1| small nuclear ribonucleoprotein Sm D3 [Drosophila melanogaster]
gi|7303511|gb|AAF58566.1| small ribonucleoprotein particle protein SmD3 [Drosophila
melanogaster]
gi|21064481|gb|AAM29470.1| RE39820p [Drosophila melanogaster]
gi|190659164|gb|EDV56377.1| GG20251 [Drosophila erecta]
gi|194125461|gb|EDW47504.1| GM21338 [Drosophila sechellia]
gi|194177221|gb|EDW90832.1| GE12410 [Drosophila yakuba]
gi|194201956|gb|EDX15532.1| GD15400 [Drosophila simulans]
gi|220948494|gb|ACL86790.1| SmD3-PA [synthetic construct]
gi|220957770|gb|ACL91428.1| SmD3-PA [synthetic construct]
Length = 151
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE +T E G G + + MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
IR+ ILPD ++ +AP K + G G GG GRG
Sbjct: 67 KIRFLILPD-------MLKNAPMFK----KQTGKGLGGTAGRG 98
>gi|195455442|ref|XP_002074722.1| GK23009 [Drosophila willistoni]
gi|194170807|gb|EDW85708.1| GK23009 [Drosophila willistoni]
Length = 150
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE +T E G G + + MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
IR+ ILPD ++ +AP K + G G GG GRG
Sbjct: 67 KIRFLILPD-------MLKNAPMFK----KQTGKGLGGTAGRG 98
>gi|195384527|ref|XP_002050966.1| GJ19907 [Drosophila virilis]
gi|194145763|gb|EDW62159.1| GJ19907 [Drosophila virilis]
Length = 151
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE +T E G G + + MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
IR+ ILPD ++ +AP K + G G GG GRG
Sbjct: 67 KIRFLILPD-------MLKNAPMFK----KQTGKGLGGTAGRG 98
>gi|195030021|ref|XP_001987867.1| GH19718 [Drosophila grimshawi]
gi|195120652|ref|XP_002004838.1| GI20137 [Drosophila mojavensis]
gi|193903867|gb|EDW02734.1| GH19718 [Drosophila grimshawi]
gi|193909906|gb|EDW08773.1| GI20137 [Drosophila mojavensis]
Length = 151
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE +T E G G + + MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
IR+ ILPD ++ +AP K + G G GG GRG
Sbjct: 67 KIRFLILPD-------MLKNAPMFK----KQTGKGLGGTAGRG 98
>gi|170578381|ref|XP_001894384.1| Probable U6 snRNA-associated Sm-like protein LSm4 [Brugia malayi]
gi|158599053|gb|EDP36777.1| Probable U6 snRNA-associated Sm-like protein LSm4, putative [Brugia
malayi]
Length = 163
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ T + G + + +RG+ I+Y +PD
Sbjct: 47 MLVELKNGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYVRGSTIKYLRIPDD 106
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGG 119
+ +E + + + ++D +R GG+ GRGG G RGRGG
Sbjct: 107 V-VELVKEEVKEVRRQQKDQQRAKRNLQGVRGGGQQGRGGVSGARGRGG 154
>gi|312086540|ref|XP_003145116.1| hypothetical protein LOAG_09541 [Loa loa]
Length = 120
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELK+G +G + D MN HL+ T + G + + +RG+ I+Y +PD +
Sbjct: 3 VELKSGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYVRGSTIKYLRIPDDV- 61
Query: 73 LETLLIDDAPRSKGKRDSRRG----GGAGGARGRGGRGGRGGGRGGRGRGGPRGRGG 125
+E + + + ++D +R GA G G RG GRGG G R + G
Sbjct: 62 VELVKEEVKEVRRQQKDQQRAKRNLQGARGGARGGSSSNRGTGRGGSQHGWNRNKAG 118
>gi|356500280|ref|XP_003518961.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 149
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|255076339|ref|XP_002501844.1| predicted protein [Micromonas sp. RCC299]
gi|226517108|gb|ACO63102.1| predicted protein [Micromonas sp. RCC299]
Length = 123
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 4 LMKLSH-ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNN 61
L+K S + +ELKNG +G + D MN HL+ V T K G + + +RGN
Sbjct: 6 LLKTSQGHPMLVELKNGETYNGHLVSCDTWMNVHLREVICTSKDGDRFWRMANCYVRGNT 65
Query: 62 IRYYILPDSL 71
I+Y +PD +
Sbjct: 66 IKYICVPDEV 75
>gi|281201415|gb|EFA75627.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 157
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTT-LDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +LK V T K + L S +RGN I+Y +PD
Sbjct: 15 IMVELKNGETFNGYLVNCDNWMNINLKNVIRTSKDSDKFWKLQSCYIRGNTIKYISVPDE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|296415636|ref|XP_002837492.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633364|emb|CAZ81683.1| unnamed protein product [Tuber melanosporum]
Length = 249
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN LK V T +G + L +RGNNI+Y +PD +
Sbjct: 132 VELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDKFFRLAECYVRGNNIKYLRVPDEI 190
>gi|219124066|ref|XP_002182333.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406294|gb|EEC46234.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 135
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELK G +G + D MN +L+ V T G+ + L S +RG++I+Y LP S
Sbjct: 15 ILVELKGGDTYNGRVVNCDTFMNMNLQDVICTSADGEHFSKLPSCYIRGSSIKYLRLPPS 74
Query: 71 LPLET 75
L LET
Sbjct: 75 L-LET 78
>gi|46121885|ref|XP_385496.1| hypothetical protein FG05320.1 [Gibberella zeae PH-1]
Length = 154
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + ++GNNI+Y +PD
Sbjct: 15 MLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYVKGNNIKYLRVPDE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|428164901|gb|EKX33911.1| hypothetical protein GUITHDRAFT_98209 [Guillardia theta CCMP2712]
Length = 125
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D+ MN L+ V T + G + + +RGNNI+Y +PD +
Sbjct: 3 VELKNGETYNGILVNCDIWMNLSLRDVVCTSRDGDKFWKIPECYIRGNNIKYLRVPDEVI 62
Query: 73 LETLLIDDAPRSKGKRD 89
+ + D P K +++
Sbjct: 63 DKVV---DEPVKKERKE 76
>gi|253735672|ref|NP_001156694.1| U6 snRNA-associated Sm-like protein [Acyrthosiphon pisum]
gi|239791415|dbj|BAH72178.1| ACYPI008634 [Acyrthosiphon pisum]
Length = 134
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T K G L +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVTCDSWMNINLREVICTSKDGDRFWRLPECYIRG 63
Query: 60 NNIRYYILPDS---LPLETLLIDDAPRSKGKRDSRRGGGAGGAR 100
+ I+Y +PD + E ++++ A +G+ D+++ GAR
Sbjct: 64 SMIKYLRIPDEIFDMVKEDIVVNKA---RGRTDNQKNRAPRGAR 104
>gi|403174347|ref|XP_003333333.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170935|gb|EFP88914.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 248
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN ++ V T G++ L +RGN I+Y + D++
Sbjct: 116 VELKNGETFNGHLIQCDNFMNLTMREVYQTSANGEQFWKLPECYIRGNTIKYIRVTDNVI 175
Query: 73 LETLLIDDAPRSKGKRDSRRGGG 95
+ +DA R + + S RGGG
Sbjct: 176 DQVKQQEDAYRQQNR--SSRGGG 196
>gi|83769760|dbj|BAE59895.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 133
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 27 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYIRGNNIKYLRIPEE 86
Query: 71 LPLETLLIDDAPRSKGKRDSR 91
+ ++ + P+++ +R
Sbjct: 87 I---IEMVKEQPQNQPSNRNR 104
>gi|242247021|ref|NP_001156271.1| U6 snRNA-associated Sm-like protein [Acyrthosiphon pisum]
gi|239790147|dbj|BAH71652.1| ACYPI008634 [Acyrthosiphon pisum]
Length = 134
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T K G L +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVTCDSWMNINLREVICTSKDGDRFWRLPECYIRG 63
Query: 60 NNIRYYILPDS---LPLETLLIDDAPRSKGKRDSRRGGGAGGAR 100
+ I+Y +PD + E ++++ A +G+ D+++ GAR
Sbjct: 64 SMIKYLRIPDEIFDMVKEDIVVNKA---RGRTDNQKNRAPRGAR 104
>gi|340383261|ref|XP_003390136.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Amphimedon
queenslandica]
Length = 131
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+KL HE VT+E G G + + MN L+ V +T + + + L+ + +RG+
Sbjct: 7 IKLLHEAEGHIVTLETVMGEIYRGKLLEAEDNMNCQLQNVTVTNRSGQVSQLEQVFVRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGK 87
IR+ I+PD ++ +AP K K
Sbjct: 67 MIRFLIVPD-------MLKNAPMFKPK 86
>gi|56757161|gb|AAW26752.1| SJCHGC06377 protein [Schistosoma japonicum]
gi|226490214|emb|CAX69349.1| putative U6 snRNA-associated Sm-like protein LSm4 [Schistosoma
japonicum]
Length = 128
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELK+G +G + D MN HLK V T + G + +RG+ I+Y +PD
Sbjct: 1 MLVELKSGETYNGHLVACDDWMNIHLKEVICTSRDGDRFWKMPECYIRGSIIKYLRIPDD 60
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRGGPRGRGG 125
+ID K K D + A+ R GRGG R +GRGG
Sbjct: 61 ------VID-----KVKEDLQL------AKMRNRSQSADTGRGGFHRNKAKGRGG 98
>gi|294881583|ref|XP_002769420.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239872829|gb|EER02138.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 137
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILP 68
+ + +ELKNG G + D MN H++ +T K G L +RGN+I+Y +P
Sbjct: 14 QPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIRGNHIKYLRIP 73
Query: 69 D 69
D
Sbjct: 74 D 74
>gi|347837957|emb|CCD52529.1| hypothetical protein [Botryotinia fuckeliana]
Length = 122
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELK+G ++G + D MN LK V T G + T L I ++GNNI+Y +PD +
Sbjct: 18 VELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYVKGNNIKYLRMPDEI 76
>gi|315051216|ref|XP_003174982.1| hypothetical protein MGYG_02512 [Arthroderma gypseum CBS 118893]
gi|311340297|gb|EFQ99499.1| hypothetical protein MGYG_02512 [Arthroderma gypseum CBS 118893]
Length = 124
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 18 MLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEE 77
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARG 101
++D A RD ++ +G +RG
Sbjct: 78 ------VVDLA------RDQQQNQQSGRSRG 96
>gi|12230329|sp|Q9ZRU9.1|LSM4_FAGSY RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 2
gi|3927916|emb|CAA10233.1| glycine-rich protein 2 [Fagus sylvatica]
Length = 148
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELK+G +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYIRGNTIKYLRVPDEV 75
>gi|223974607|gb|ACN31491.1| unknown [Zea mays]
Length = 146
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+E KNG +G + D MN HL+ V T K G + + +RGN I+Y +PD
Sbjct: 17 VEPKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE-- 74
Query: 73 LETLLIDDAPRSKGK-RDSRRGGGAGGARGRGGRGGRGGGRG 113
+ID K R R+ G G RGRG G + GGRG
Sbjct: 75 ----VIDKVQEETSKSRSDRKPPGVGRGRGRGDVGAKPGGRG 112
>gi|195473653|ref|XP_002089107.1| GE25987 [Drosophila yakuba]
gi|194175208|gb|EDW88819.1| GE25987 [Drosophila yakuba]
Length = 140
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +L+ V T K G + +RG+ I+Y +PD
Sbjct: 1 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 60
Query: 71 LPLETLLIDDA---PRSKGKRDSRRGGGA 96
+ ++ +DA R++ + + RGG A
Sbjct: 61 VI--DMVKEDAQAKSRNRTEMNKNRGGNA 87
>gi|38047763|gb|AAR09784.1| similar to Drosophila melanogaster CG17768, partial [Drosophila
yakuba]
Length = 152
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + +ELKNG +G + D MN +L+ V T K G + +RG
Sbjct: 2 LSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRG 61
Query: 60 NNIRYYILPDSLPLETLLIDDA---PRSKGKRDSRRGGGA 96
+ I+Y +PD + ++ +DA R++ + + RGG A
Sbjct: 62 STIKYLRIPDEVI--DMVKEDAQAKSRNRTEMNKNRGGNA 99
>gi|294463283|gb|ADE77177.1| unknown [Picea sitchensis]
Length = 146
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|156034609|ref|XP_001585723.1| hypothetical protein SS1G_13239 [Sclerotinia sclerotiorum 1980]
gi|154698643|gb|EDN98381.1| hypothetical protein SS1G_13239 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 122
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELK+G ++G + D MN LK V T G + T L I ++GNNI+Y +PD +
Sbjct: 18 VELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYVKGNNIKYLRMPDEI 76
>gi|317147121|ref|XP_003189888.1| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus oryzae
RIB40]
Length = 121
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYIRGNNIKYLRIPEE 74
Query: 71 LPLETLLIDDAPRSKGKRDSR 91
+ ++ + P+++ +R
Sbjct: 75 I---IEMVKEQPQNQPSNRNR 92
>gi|317147119|ref|XP_001821897.2| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus oryzae
RIB40]
Length = 123
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 17 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYIRGNNIKYLRIPEE 76
Query: 71 LPLETLLIDDAPRSKGKRDSR 91
+ ++ + P+++ +R
Sbjct: 77 I---IEMVKEQPQNQPSNRNR 94
>gi|340517649|gb|EGR47892.1| predicted protein [Trichoderma reesei QM6a]
Length = 152
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G + L + ++GNNI+Y +PD
Sbjct: 15 MLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYVKGNNIKYLRVPDE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|195148972|ref|XP_002015436.1| GL11081 [Drosophila persimilis]
gi|198455755|ref|XP_002138132.1| GA24604 [Drosophila pseudoobscura pseudoobscura]
gi|194109283|gb|EDW31326.1| GL11081 [Drosophila persimilis]
gi|198135383|gb|EDY68690.1| GA24604 [Drosophila pseudoobscura pseudoobscura]
Length = 150
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE +T E G G + + MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTGNLENVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
IR+ ILPD ++ +AP K + G G GG GRG
Sbjct: 67 KIRFLILPD-------MLKNAPMFK----KQTGKGLGGTAGRG 98
>gi|302881905|ref|XP_003039863.1| hypothetical protein NECHADRAFT_85726 [Nectria haematococca mpVI
77-13-4]
gi|256720730|gb|EEU34150.1| hypothetical protein NECHADRAFT_85726 [Nectria haematococca mpVI
77-13-4]
Length = 125
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG ++G + D MN L+ V T +G + L + ++GNNI+Y +PD
Sbjct: 17 VELKNGETLNGHLVSCDTWMNLTLREVVQTSPEGDKFVRLPEVYVKGNNIKYLRVPDE-- 74
Query: 73 LETLLIDDAPRSK 85
+ID S+
Sbjct: 75 ----IIDQVSESQ 83
>gi|440638708|gb|ELR08627.1| hypothetical protein GMDG_03318 [Geomyces destructans 20631-21]
Length = 124
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN LK V T +G + L + ++GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDKFFRLAEVYVKGNNIKYLRVPDEI 75
>gi|363808094|ref|NP_001242473.1| uncharacterized protein LOC100786834 [Glycine max]
gi|255645080|gb|ACU23039.1| unknown [Glycine max]
Length = 138
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 3 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE-- 60
Query: 73 LETLLIDDAPRSKGKRDSRR 92
+ID R R+
Sbjct: 61 ----VIDKVQEETKSRADRK 76
>gi|240848533|ref|NP_001155808.1| small nuclear ribonucleoprotein Sm D3 [Acyrthosiphon pisum]
gi|239789870|dbj|BAH71532.1| ACYPI009639 [Acyrthosiphon pisum]
Length = 139
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 17/106 (16%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E +G G + + MN + V +T + ++++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETIDGEVYRGKLIEAEDNMNCQVSHVTVTYRDGRVAQMENVYVRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRG 106
+R+ ILPD ++ +AP K K GGA GRG G
Sbjct: 67 KVRFIILPD-------MLRNAPMFKSKMT------MGGAAGRGKSG 99
>gi|327304028|ref|XP_003236706.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326462048|gb|EGD87501.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 121
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 15/94 (15%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
++D A RD ++ +G R RGG
Sbjct: 75 ------VVDLA------RDQQQSQQSG--RNRGG 94
>gi|326470583|gb|EGD94592.1| small nuclear ribonucleoprotein [Trichophyton tonsurans CBS 112818]
gi|326484638|gb|EGE08648.1| small nuclear ribonucleoprotein [Trichophyton equinum CBS 127.97]
Length = 121
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 15/94 (15%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
++D A RD ++ +G R RGG
Sbjct: 75 ------VVDLA------RDQQQNQQSG--RNRGG 94
>gi|238496529|ref|XP_002379500.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
flavus NRRL3357]
gi|220694380|gb|EED50724.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
flavus NRRL3357]
gi|391868822|gb|EIT78031.1| small nuclear ribonucleoprotein [Aspergillus oryzae 3.042]
Length = 121
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYIRGNNIKYLRIPEE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|403303582|ref|XP_003942405.1| PREDICTED: uncharacterized protein LOC101034609 [Saimiri
boliviensis boliviensis]
Length = 285
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 150 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 209
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 210 STIKYLRIPDEI 221
>gi|212537193|ref|XP_002148752.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
marneffei ATCC 18224]
gi|210068494|gb|EEA22585.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
marneffei ATCC 18224]
Length = 170
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLK-TVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN LK V+ T +G L + +RGNNI+Y +P+ +
Sbjct: 69 VELKNGETLNGHLVNCDNWMNLTLKEVVQTTPEGDRFFRLPEVYVRGNNIKYLRVPEEI 127
>gi|328774253|gb|EGF84290.1| hypothetical protein BATDEDRAFT_85018 [Batrachochytrium
dendrobatidis JAM81]
Length = 132
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTV-KMTVKGKEPTTLDSISLRG 59
++ L K + IELKNG +G + D MN +L+ V + + G++ + I +RG
Sbjct: 4 LSLLNKAQGHPMLIELKNGDTFNGHLVNCDPYMNVNLREVIRTSADGEKFWKIPEIYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRG 118
+ I+Y +PD + L+ ++ R + D R G +GG RGGRG R G+ G
Sbjct: 64 STIKYLRVPDEIL--DLVKEEQSRPRQNDDRRGGYRSGGMGRGDNRGGRGNSRDGKQEG 120
>gi|328876176|gb|EGG24539.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 162
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTT-LDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +++TV T K + L +RGN I+Y +PD
Sbjct: 15 IMVELKNGETYNGILVNCDNWMNINMRTVIRTSKDSDKFWKLQGCYIRGNTIKYITVPDE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|408393268|gb|EKJ72533.1| hypothetical protein FPSE_07170 [Fusarium pseudograminearum
CS3096]
Length = 139
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN LK V T +G L + ++GNNI+Y +PD +
Sbjct: 32 VELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYVKGNNIKYLRVPDEI 90
>gi|357631535|gb|EHJ79005.1| hypothetical protein KGM_15381 [Danaus plexippus]
Length = 130
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + V +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 66
Query: 61 NIRYYILPDSL 71
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|396487975|ref|XP_003842766.1| hypothetical protein LEMA_P085260.1 [Leptosphaeria maculans JN3]
gi|312219343|emb|CBX99287.1| hypothetical protein LEMA_P085260.1 [Leptosphaeria maculans JN3]
Length = 114
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHL-KTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELK+G ++G + D MN L + V+ + G + L I +RG+ I+Y +PD
Sbjct: 3 VELKSGETLNGLLINCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGSTIKYLRVPDE-- 60
Query: 73 LETLLIDDAPRSKGKRDSRRGG 94
++D + K + RGG
Sbjct: 61 ----IVDVVKEQQAKDQANRGG 78
>gi|449300793|gb|EMC96805.1| hypothetical protein BAUCODRAFT_122769 [Baudoinia compniacensis
UAMH 10762]
Length = 125
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN LK V T +G + L +RGNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVNCDTYMNLTLKEVVQTSPEGDKFFRLPECYVRGNNIKYLRVPDEI 75
>gi|115383910|ref|XP_001208502.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
gi|114196194|gb|EAU37894.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
Length = 119
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFKLPEVYIRGNNIKYLRIPEE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|395848095|ref|XP_003796696.1| PREDICTED: uncharacterized protein LOC100963645 [Otolemur
garnettii]
Length = 312
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 177 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 236
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 237 STIKYLRIPDEI 248
>gi|320035592|gb|EFW17533.1| small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392868800|gb|EAS34594.2| small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 125
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI++ +P+
Sbjct: 15 MLVELKNGETLNGHLVNCDSWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKFLRVPEE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGAR 100
+ + R + +++ G GGA+
Sbjct: 75 -------VVEIARDQQQQNQPSTRGRGGAQ 97
>gi|195339803|ref|XP_002036506.1| GM11687 [Drosophila sechellia]
gi|194130386|gb|EDW52429.1| GM11687 [Drosophila sechellia]
Length = 140
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +L+ V T K G + +RG+ I+Y +PD
Sbjct: 1 MLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDE 60
Query: 71 LPLETLLIDDA---PRSKGKRDSRRGGGA 96
+ ++ +DA R++ + + RGG +
Sbjct: 61 VI--DMVKEDAQAKSRNRTEMNKNRGGNS 87
>gi|389610295|dbj|BAM18759.1| small ribonucleoprotein particle protein SmD3 [Papilio xuthus]
Length = 130
Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + V +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHVVTCETITGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
IR+ ILPD ++ +AP K R+G RG+
Sbjct: 67 KIRFLILPD-------MLKNAPMFK-----RQGNKPSAGRGKSA 98
>gi|194859892|ref|XP_001969475.1| GG23936 [Drosophila erecta]
gi|190661342|gb|EDV58534.1| GG23936 [Drosophila erecta]
Length = 154
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + +ELKNG +G + D MN +L+ V T K G + +RG
Sbjct: 4 LSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGR 102
+ I+Y +PD + ++ + D +S+ + + + G ++ +
Sbjct: 64 STIKYLRIPDEV-IDMVKEDAQAKSRNRTEMNKNRGGNSSQNQ 105
>gi|402079351|gb|EJT74616.1| glycine rich protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 141
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN +K V T +G + L I ++GNNI+Y +PD
Sbjct: 15 MMVELKNGETLNGHLVMCDTWMNLTMKEVVQTSPEGDKFMRLPEIYVKGNNIKYLRVPDE 74
Query: 71 L 71
+
Sbjct: 75 V 75
>gi|380477058|emb|CCF44358.1| small nuclear ribonucleoprotein [Colletotrichum higginsianum]
Length = 170
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLK-TVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN LK V+ + +G + + + ++GNNI+Y +PD +
Sbjct: 56 VELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFVKIPEVYVKGNNIKYLRVPDDI 114
>gi|121715750|ref|XP_001275484.1| small nuclear ribonucleoprotein [Aspergillus clavatus NRRL 1]
gi|119403641|gb|EAW14058.1| small nuclear ribonucleoprotein [Aspergillus clavatus NRRL 1]
Length = 119
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLK-TVKMTVKGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V+ + +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILKEVVQASPEGDRFFRLPEVYIRGNNIKYLRIPEE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|432854576|ref|XP_004067969.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Oryzias
latipes]
Length = 144
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGK-----RDSRRGGGAGGARGRGGRGGRGGGRGG 114
+ I+Y +PD + ++ D SKG+ + +++ G G GRG G RG G G
Sbjct: 64 STIKYLRIPDEI---IDMVKDEVVSKGRGRGGAQQNKQQGKGRGGAGRGVFGSRGRGMSG 120
Query: 115 RGRG 118
GRG
Sbjct: 121 PGRG 124
>gi|303315215|ref|XP_003067615.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240107285|gb|EER25470.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 144
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG ++G + D MN LK V T +G L + +RGNNI++ +P+
Sbjct: 36 VELKNGETLNGHLVNCDSWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKFLRVPEE-- 93
Query: 73 LETLLIDDAPRSKGKRDSRRGGGAGGAR 100
+ + R + +++ G GGA+
Sbjct: 94 -----VVEIARDQQQQNQPSTRGRGGAQ 116
>gi|242809941|ref|XP_002485479.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218716104|gb|EED15526.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 118
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLK-TVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN LK V+ T +G L + +RGNNI+Y +P+ +
Sbjct: 17 VELKNGETLNGHLVNCDNWMNLTLKEVVQTTPEGDRFFRLPEVYVRGNNIKYLRVPEEI 75
>gi|195578187|ref|XP_002078947.1| GD22262 [Drosophila simulans]
gi|194190956|gb|EDX04532.1| GD22262 [Drosophila simulans]
Length = 154
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + +ELKNG +G + D MN +L+ V T K G + +RG
Sbjct: 4 LSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDA---PRSKGKRDSRRGGGA 96
+ I+Y +PD + ++ +DA R++ + + RGG +
Sbjct: 64 STIKYLRIPDEVI--DMVKEDAQAKSRNRTEMNKNRGGNS 101
>gi|358394136|gb|EHK43537.1| hypothetical protein TRIATDRAFT_266952 [Trichoderma atroviride
IMI 206040]
Length = 130
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN LK V T +G + L + ++GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYVKGNNIKYLRVPDEI 75
>gi|296812049|ref|XP_002846362.1| small nuclear ribonucleoprotein [Arthroderma otae CBS 113480]
gi|238841618|gb|EEQ31280.1| small nuclear ribonucleoprotein [Arthroderma otae CBS 113480]
Length = 126
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 21 MLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEE 80
Query: 71 L 71
+
Sbjct: 81 V 81
>gi|78706862|ref|NP_001027236.1| CG17768, isoform A [Drosophila melanogaster]
gi|320544912|ref|NP_001188778.1| CG17768, isoform B [Drosophila melanogaster]
gi|45445082|gb|AAF52938.3| CG17768, isoform A [Drosophila melanogaster]
gi|201065957|gb|ACH92388.1| FI07244p [Drosophila melanogaster]
gi|318068412|gb|ADV37028.1| CG17768, isoform B [Drosophila melanogaster]
Length = 154
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + +ELKNG +G + D MN +L+ V T K G + +RG
Sbjct: 4 LSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDA---PRSKGKRDSRRGGGAG 97
+ I+Y +PD + ++ +DA R++ + + RGG +
Sbjct: 64 STIKYLRIPDEVI--DMVKEDAQAKSRNRTEMNKNRGGNSS 102
>gi|358382645|gb|EHK20316.1| hypothetical protein TRIVIDRAFT_68894 [Trichoderma virens Gv29-8]
Length = 129
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN LK V T +G + L + ++GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYVKGNNIKYLRVPDEI 75
>gi|448085360|ref|XP_004195840.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
gi|359377262|emb|CCE85645.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
Length = 126
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 9 HETVTIELKNGTQVHGTIQGVDVAMNTHLKTV-KMTVKGKEPTTLDSISLRGNNIRYYIL 67
++ + +ELKNG ++G + D MN L V +++ G L +RGN+I+Y L
Sbjct: 12 NQPILVELKNGETLNGELVNCDSWMNLTLNNVIQVSANGTNFLKLPECYVRGNHIKYMRL 71
Query: 68 PDSL 71
P+ L
Sbjct: 72 PEEL 75
>gi|157129367|ref|XP_001661657.1| small nuclear ribonucleoprotein sm d3 [Aedes aegypti]
gi|108872253|gb|EAT36478.1| AAEL011433-PA [Aedes aegypti]
Length = 147
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQLTVTYRDGRTSNLENVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
IR+ ILPD ++ +AP K + G G GRG
Sbjct: 67 KIRFMILPD-------MLKNAPMFK------KQGAKAGTAGRG 96
>gi|358365662|dbj|GAA82284.1| U6 snRNA-associated Sm-like protein LSM4 [Aspergillus kawachii
IFO 4308]
Length = 121
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLASCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRIPEE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|195434128|ref|XP_002065055.1| GK14878 [Drosophila willistoni]
gi|194161140|gb|EDW76041.1| GK14878 [Drosophila willistoni]
Length = 303
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN +L+ V T K G + +RG+ I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDEVI 76
Query: 73 LETLLIDDA---PRSKGKRDSRRGGGA 96
++ +DA R++G+ + RGG +
Sbjct: 77 --DMVKEDAQAKSRNRGEMNKNRGGNS 101
>gi|198436795|ref|XP_002126080.1| PREDICTED: similar to Small nuclear ribonucleoprotein Sm D3
(Sm-D3) (snRNP core protein D3) [Ciona intestinalis]
Length = 130
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN+ ++ V +T + L +I +RG+
Sbjct: 7 IKVLHEAEGHVVTCESATGEVYRGKLIEAEDNMNSQMQDVTVTYRDGRTAQLQNIYIRGS 66
Query: 61 NIRYYILPDSL 71
+R+ ILPD L
Sbjct: 67 QVRFMILPDML 77
>gi|145232181|ref|XP_001399544.1| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus niger CBS
513.88]
gi|134056455|emb|CAL00622.1| unnamed protein product [Aspergillus niger]
Length = 121
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRIPEE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|350634474|gb|EHA22836.1| hypothetical protein ASPNIDRAFT_127789 [Aspergillus niger ATCC
1015]
Length = 118
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRIPEE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|323452593|gb|EGB08466.1| hypothetical protein AURANDRAFT_25994 [Aureococcus
anophagefferens]
Length = 139
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
IELKNG +G + D MN +L+ V T + G L +RGN+I+Y +PD +
Sbjct: 17 IELKNGDTYNGRLVSADTWMNVNLEEVICTSRDGDRFWKLKECYIRGNSIKYLRIPDEI 75
>gi|119481265|ref|XP_001260661.1| small nuclear ribonucleoprotein [Neosartorya fischeri NRRL 181]
gi|146322938|ref|XP_755534.2| U6 snRNA-associated Sm-like protein LSM4 [Aspergillus fumigatus
Af293]
gi|119408815|gb|EAW18764.1| small nuclear ribonucleoprotein [Neosartorya fischeri NRRL 181]
gi|129558535|gb|EAL93496.2| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
fumigatus Af293]
Length = 119
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRIPEE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|310795553|gb|EFQ31014.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 128
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN LK V T +G + + + ++GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFVKIPEVYVKGNNIKYLRVPDDI 75
>gi|167516422|ref|XP_001742552.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779176|gb|EDQ92790.1| predicted protein [Monosiga brevicollis MX1]
Length = 115
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 8 SHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYI 66
S+ + +ELKNG +G + D MN ++ V +T K G + +RGNNI++
Sbjct: 11 SNHMMLVELKNGETYNGHLSKCDNYMNITMRDVTLTSKDGDRFWKMPECYIRGNNIKFLR 70
Query: 67 LPDSL 71
+PD +
Sbjct: 71 IPDEV 75
>gi|320590330|gb|EFX02773.1| bar domain containing protein [Grosmannia clavigera kw1407]
Length = 1158
Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLK-TVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN LK V+ + G + + ++GNNI+Y +PD +
Sbjct: 381 VELKNGETLNGHLVQCDTWMNLTLKGVVQTSPDGDSFMRIPEVYVKGNNIKYLRVPDEI 439
>gi|332376959|gb|AEE63619.1| unknown [Dendroctonus ponderosae]
Length = 138
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ H+ VT E G G + + MN L + +T + L+++ +RG+
Sbjct: 7 IKVLHDAEGHIVTCETITGEVYRGKLIEAEDNMNCQLTQITVTYRDGRVAQLENVYIRGS 66
Query: 61 NIRYYILPDSL 71
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|367022520|ref|XP_003660545.1| hypothetical protein MYCTH_2298987 [Myceliophthora thermophila
ATCC 42464]
gi|347007812|gb|AEO55300.1| hypothetical protein MYCTH_2298987 [Myceliophthora thermophila
ATCC 42464]
Length = 128
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN L+ V T +G + L + ++GNNI+Y +PD
Sbjct: 15 MLVELKNGETLNGHLVQCDTWMNLTLREVVQTSPEGDKFMRLPEVYVKGNNIKYLRVPDE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|159129598|gb|EDP54712.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
fumigatus A1163]
Length = 105
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN LK V T +G L + +RGNNI+Y +P+ +
Sbjct: 3 VELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRIPEEI 61
>gi|400596410|gb|EJP64184.1| small nuclear ribonucleoprotein [Beauveria bassiana ARSEF 2860]
Length = 116
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN LK V T +G + L + ++GNNI+Y +P+ +
Sbjct: 3 VELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDKFVRLPEVYVKGNNIKYLRVPEEI 61
>gi|294653209|gb|ADF28512.1| small nuclear robonucleoprotein SMD3 [Pelinobius muticus]
Length = 122
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT+E G G + + MN + V +T + L++I +RG+
Sbjct: 7 VKVFHEAEGHVVTLETNTGEIYRGRLVEAEDNMNCQMADVTVTYRDGRVGQLENIYIRGS 66
Query: 61 NIRYYILPDSL 71
IR+ ILPD+L
Sbjct: 67 KIRFLILPDTL 77
>gi|298715431|emb|CBJ28042.1| Sm-like protein LSm4 [Ectocarpus siliculosus]
Length = 165
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTT-LDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN LK V T + + + + +RGN+I+Y +P+
Sbjct: 17 VELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPE--- 73
Query: 73 LETL-LIDDAPRSKGKR 88
E L ++ + SK KR
Sbjct: 74 -EVLDMVQEEDLSKEKR 89
>gi|262401386|gb|ACY66595.1| small nuclear ribonucleoprotein SM D3 (snRNP core protein D3)
(SM-D3)-like protein [Scylla paramamosain]
Length = 101
Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 33 MNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRR 92
MN ++ +T + + L+++ +RG+ IR+ ILPD ++ +AP K R+
Sbjct: 12 MNVQMEACTVTYRNGQTARLENVFIRGSKIRFLILPD-------MLKNAPMFKNM-TGRK 63
Query: 93 GGGAGG 98
GG AG
Sbjct: 64 GGAAGS 69
>gi|169606003|ref|XP_001796422.1| hypothetical protein SNOG_06034 [Phaeosphaeria nodorum SN15]
gi|111065978|gb|EAT87098.1| hypothetical protein SNOG_06034 [Phaeosphaeria nodorum SN15]
Length = 187
Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHL-KTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELK+G ++G + D MN L + V+ + G + L I +RG+ I+Y +PD
Sbjct: 77 VELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGSTIKYLRVPDE-- 134
Query: 73 LETLLIDDAPRSKGKRDSRRGGGAGG 98
I D + + +D GG GG
Sbjct: 135 -----IVDVVKDQQVKDQANRGGRGG 155
>gi|336270436|ref|XP_003349977.1| hypothetical protein SMAC_00869 [Sordaria macrospora k-hell]
gi|380095367|emb|CCC06840.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 130
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN L+ V T +G + L + ++GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLIQCDTWMNLTLREVVQTSPEGDKFARLPEVYVKGNNIKYLRVPDDV 75
>gi|85107173|ref|XP_962325.1| hypothetical protein NCU07683 [Neurospora crassa OR74A]
gi|28923928|gb|EAA33089.1| hypothetical protein NCU07683 [Neurospora crassa OR74A]
Length = 130
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN L+ V T +G + L + ++GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLIQCDTWMNLTLREVVQTSPEGDKFVRLPEVYVKGNNIKYLRVPDDV 75
>gi|378734306|gb|EHY60765.1| hypothetical protein HMPREF1120_08709 [Exophiala dermatitidis
NIH/UT8656]
Length = 135
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T +G L +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDRFWRLPEAYVRGNNIKYLRVPEE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|325186130|emb|CCA20631.1| unnamed protein product putative [Albugo laibachii Nc14]
Length = 143
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +L V T K G + +RGN ++Y +P+
Sbjct: 1 MLVELKNGDTYNGHFKNCDTWMNINLCDVICTSKDGDRFWKMPECYIRGNTVKYVRVPNE 60
Query: 71 L 71
+
Sbjct: 61 I 61
>gi|10720074|sp|Q9QXA5.1|LSM4_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm4
gi|6692064|emb|CAB65729.1| Lsm4 protein [Mus musculus]
Length = 137
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|336470904|gb|EGO59065.1| hypothetical protein NEUTE1DRAFT_116371 [Neurospora tetrasperma
FGSC 2508]
gi|350291974|gb|EGZ73169.1| Sm-like ribonucleoprotein [Neurospora tetrasperma FGSC 2509]
Length = 130
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN L+ V T +G + L + ++GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLIQCDTWMNLTLREVVQTSPEGDKFVRLREVYVKGNNIKYLRVPDDV 75
>gi|209735614|gb|ACI68676.1| U6 snRNA-associated Sm-like protein LSm4 [Salmo salar]
Length = 150
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|224015193|ref|XP_002297255.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968091|gb|EED86446.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 139
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPD 69
+ +ELK+GT +G + D MN +L+ V T K G + L+ +RG++++Y LP+
Sbjct: 15 LLVELKSGTTYNGRLVNCDTYMNLNLRDVVCTSKEGDKFWKLNECYIRGSSVKYLRLPE 73
>gi|224015187|ref|XP_002297252.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968088|gb|EED86443.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 139
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPD 69
+ +ELK+GT +G + D MN +L+ V T K G + L+ +RG++++Y LP+
Sbjct: 15 LLVELKSGTTYNGRLVNCDTYMNLNLRDVVCTSKEGDKFWKLNECYIRGSSVKYLRLPE 73
>gi|213406934|ref|XP_002174238.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
gi|212002285|gb|EEB07945.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
Length = 119
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G ++ D MN L+ V T+ +G + + +RGNNI+Y + D
Sbjct: 15 ILVELKNGETFNGHLEKCDNYMNLTLQEVIQTMPEGDKFFRMPECYIRGNNIKYLRVQDE 74
Query: 71 L 71
L
Sbjct: 75 L 75
>gi|261195536|ref|XP_002624172.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239588044|gb|EEQ70687.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239610465|gb|EEQ87452.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
Length = 124
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN L+ V T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLVNCDNWMNLILREVVQTSPEGDRFFRLPEMYVRGNNIKYLRVPEE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGG 95
++D A + + S R G
Sbjct: 75 ------VVDLAKDQQQNQPSNRARG 93
>gi|402581860|gb|EJW75807.1| small nuclear ribonucleoprotein, partial [Wuchereria bancrofti]
Length = 123
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN HL+ T + G + + +RG+ I+Y +PD +
Sbjct: 16 VELKNGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYVRGSTIKYLRIPDDV 74
>gi|209733716|gb|ACI67727.1| U6 snRNA-associated Sm-like protein LSm4 [Salmo salar]
Length = 147
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|345560998|gb|EGX44114.1| hypothetical protein AOL_s00210g95 [Arthrobotrys oligospora ATCC
24927]
Length = 145
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN LK V T G+ L +RGNNI+Y +PD
Sbjct: 15 LLVELKNGETLNGHLVSCDTWMNLTLKEVIQTSPDGETFHRLPEAYVRGNNIKYLRVPDE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|148696909|gb|EDL28856.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Mus musculus]
Length = 143
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 9 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 68
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 69 STIKYLRIPDEI 80
>gi|259479587|tpe|CBF69945.1| TPA: U6 snRNA-associated Sm-like protein LSM4, putative
(AFU_orthologue; AFUA_2G12020) [Aspergillus nidulans
FGSC A4]
Length = 119
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN L+ V T +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLANCDNWMNLILREVVQTSPEGDRFFKLPEVYVRGNNIKYLRIPEE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|116196218|ref|XP_001223921.1| hypothetical protein CHGG_04707 [Chaetomium globosum CBS 148.51]
gi|88180620|gb|EAQ88088.1| hypothetical protein CHGG_04707 [Chaetomium globosum CBS 148.51]
Length = 127
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN L+ V T +G + L + ++GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVLCDTWMNLTLREVVQTSPEGDKFVRLPEVYVKGNNIKYLRVPDDI 75
>gi|452986281|gb|EME86037.1| hypothetical protein MYCFIDRAFT_130274, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 126
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELK G ++G + D MN LK V T +G + L +RGNNI+Y +PD +
Sbjct: 17 VELKTGETLNGHLVSCDTYMNLTLKEVVQTSPEGDKFFRLAECYVRGNNIKYLRVPDEV 75
>gi|327349106|gb|EGE77963.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ATCC
18188]
Length = 167
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN L+ V T +G L + +RGNNI+Y +P+
Sbjct: 58 MLVELKNGETLNGHLVNCDNWMNLILREVVQTSPEGDRFFRLPEMYVRGNNIKYLRVPEE 117
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGG 95
++D A + + S R G
Sbjct: 118 ------VVDLAKDQQQNQPSNRARG 136
>gi|389633655|ref|XP_003714480.1| glycine rich protein [Magnaporthe oryzae 70-15]
gi|351646813|gb|EHA54673.1| glycine rich protein [Magnaporthe oryzae 70-15]
gi|440476439|gb|ELQ45036.1| glycine rich protein [Magnaporthe oryzae Y34]
gi|440489076|gb|ELQ68756.1| glycine rich protein [Magnaporthe oryzae P131]
Length = 121
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN L+ V T G + L I ++GNNI+Y +PD +
Sbjct: 3 VELKNGETLNGHLVQCDTWMNLTLREVVQTSPDGDKFMRLPEIYVKGNNIKYLRVPDEV 61
>gi|170041265|ref|XP_001848390.1| small nuclear ribonucleoprotein sm [Culex quinquefasciatus]
gi|167864864|gb|EDS28247.1| small nuclear ribonucleoprotein sm [Culex quinquefasciatus]
Length = 156
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN +L+ V T K G + + +RG+ I+Y +PD +
Sbjct: 4 VELKNGETYNGHLVSCDTWMNINLREVICTSKDGDKFWRMPECYIRGSTIKYLRIPDEV 62
>gi|157109644|ref|XP_001650762.1| small nuclear ribonucleoprotein sm [Aedes aegypti]
gi|108878946|gb|EAT43171.1| AAEL005355-PA [Aedes aegypti]
Length = 154
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +L+ V T K G + + +RG+ I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVSCDTWMNINLREVICTSKDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 71 L 71
+
Sbjct: 75 V 75
>gi|156395605|ref|XP_001637201.1| predicted protein [Nematostella vectensis]
gi|156224311|gb|EDO45138.1| predicted protein [Nematostella vectensis]
Length = 137
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN +L+ V T + G + + +RG+NI+Y +PD +
Sbjct: 18 VELKNGETYNGHLVSCDTWMNINLREVICTSRDGDKFWKIPECYVRGSNIKYLRIPDEV 76
>gi|307195781|gb|EFN77595.1| U6 snRNA-associated Sm-like protein LSm4 [Harpegnathos saltator]
Length = 138
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 3 LSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNVNLREVICTSRDGDKFWRMPECYIRG 62
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 63 STIKYLRIPDEV 74
>gi|328780963|ref|XP_624908.3| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Apis
mellifera]
Length = 138
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEV 75
>gi|260793240|ref|XP_002591620.1| hypothetical protein BRAFLDRAFT_281075 [Branchiostoma floridae]
gi|229276829|gb|EEN47631.1| hypothetical protein BRAFLDRAFT_281075 [Branchiostoma floridae]
Length = 126
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G ++ D MN L+ V T + G + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLEACDNWMNIKLRDVICTSRDGDRFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEV 75
>gi|13161882|emb|CAC33027.1| Lsm4 protein [Takifugu rubripes]
Length = 144
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKG------KRDSRRGGGAGGARGRGGRGGRGGGRG 113
+ I+Y +PD + ++ + SKG +++ ++G G GGA G G RG G
Sbjct: 64 STIKYLRIPDEI---IDMVKEDVLSKGRGRGGAQQNKQQGKGRGGAGRVGVFGSRGRGLT 120
Query: 114 GRGRG 118
G GRG
Sbjct: 121 GPGRG 125
>gi|355700149|gb|AES01356.1| LSM4-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
Length = 153
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 19 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 78
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 79 STIKYLRIPDEI 90
>gi|398390838|ref|XP_003848879.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
gi|339468755|gb|EGP83855.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
Length = 129
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELK G ++G + D MN LK V T G + L +RGNNI+Y +PD +
Sbjct: 17 VELKTGETLNGHLVSCDTYMNIMLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEV 75
>gi|341899817|gb|EGT55752.1| CBN-LSM-4 protein [Caenorhabditis brenneri]
Length = 123
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G ++ D MN HL V T K G + + +RG+ I+Y +P+++
Sbjct: 18 VELKNGETYNGHLKACDAWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRIPETV 76
>gi|453086958|gb|EMF14999.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 138
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELK G ++G + D MN LK V T +G L +RGNNI+Y +PD +
Sbjct: 17 VELKTGETLNGHLVSCDTYMNITLKEVVQTSPEGDHFFRLAECYVRGNNIKYLRVPDEV 75
>gi|440791795|gb|ELR13033.1| LSM domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 131
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN +L+ V T + G+ + +RGN I+Y +PD +
Sbjct: 3 VELKNGETYNGHLVNCDGWMNINLRDVICTSRDGERFWRIPQCYIRGNTIKYLCIPDEV 61
>gi|345488677|ref|XP_003425963.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Nasonia
vitripennis]
Length = 138
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGKRDSR 91
+ I+Y +PD + ++ + D +S+G+ D +
Sbjct: 64 STIKYLRIPDEV-IDMVKEDVQMKSRGRGDMK 94
>gi|68064470|ref|XP_674219.1| U6 snRNA associated Sm-like protein Ls; U6 snRNA associated
Sm-like protein LsM4 [Plasmodium berghei strain ANKA]
gi|56492635|emb|CAH99966.1| U6 snRNA associated Sm-like protein Ls; U6 snRNA associated
Sm-like protein LsM4, putative [Plasmodium berghei]
Length = 130
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 4 LMKLSH-ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNN 61
L+K S + V +ELKNG G + D MN H+K + T K G + + +RG++
Sbjct: 5 LLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGSS 64
Query: 62 IRYYILPDSLPLETLLIDDAPRSKGK 87
++Y + D +E I++ K +
Sbjct: 65 VKYIRVQDQ-AIENA-IEETAEQKSR 88
>gi|367045678|ref|XP_003653219.1| hypothetical protein THITE_2115403 [Thielavia terrestris NRRL
8126]
gi|347000481|gb|AEO66883.1| hypothetical protein THITE_2115403 [Thielavia terrestris NRRL
8126]
Length = 127
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN L+ V T +G L + ++GNNI+Y +PD
Sbjct: 15 MLVELKNGETLNGHLVLCDTWMNLTLREVVQTSPEGDRFMRLPEVYVKGNNIKYLRVPDE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|268562665|ref|XP_002646730.1| C. briggsae CBR-LSM-4 protein [Caenorhabditis briggsae]
Length = 124
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G ++ D MN HL V T K G + + +RG+ I+Y +P+++
Sbjct: 18 VELKNGETYNGHLKACDAWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRIPETV 76
>gi|308503320|ref|XP_003113844.1| CRE-LSM-4 protein [Caenorhabditis remanei]
gi|308263803|gb|EFP07756.1| CRE-LSM-4 protein [Caenorhabditis remanei]
Length = 123
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G ++ D MN HL V T K G + + +RG+ I+Y +P+++
Sbjct: 18 VELKNGETYNGHLKACDAWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRIPETV 76
>gi|41152340|ref|NP_956990.1| U6 snRNA-associated Sm-like protein LSm4 [Danio rerio]
gi|37589787|gb|AAH59435.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Danio rerio]
gi|38328316|gb|AAH62285.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Danio rerio]
Length = 143
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|452845143|gb|EME47076.1| hypothetical protein DOTSEDRAFT_124881, partial [Dothistroma
septosporum NZE10]
Length = 126
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELK G ++G + D MN LK V T G + L +RGNNI+Y +PD +
Sbjct: 17 VELKTGETLNGHLVACDTYMNITLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEV 75
>gi|392560868|gb|EIW54050.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 161
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRG 59
++ L ++ + +ELKNG +G + D MN L+ T +G L +RG
Sbjct: 34 LSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREAYQTSAEGDRFWKLKECYIRG 93
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD+L
Sbjct: 94 STIKYLRVPDTL 105
>gi|326934546|ref|XP_003213349.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Meleagris
gallopavo]
Length = 174
Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 40 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 99
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 100 STIKYLRIPDEI 111
>gi|426230288|ref|XP_004009208.1| PREDICTED: uncharacterized protein LOC101110507, partial [Ovis
aries]
Length = 207
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 8 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 67
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 68 STIKYLRIPDEI 79
>gi|258597219|ref|XP_001347757.2| lsm4 homologue, putative [Plasmodium falciparum 3D7]
gi|254832602|gb|AAN35670.2| lsm4 homologue, putative [Plasmodium falciparum 3D7]
Length = 126
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 4 LMKLSH-ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNN 61
L+K S + V +ELKNG G + D MN H+K + T K G + + +RGN+
Sbjct: 7 LLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGNS 66
Query: 62 IRYYILPDSLPLETLLIDDAPRSKG 86
I+Y + D + I++ K
Sbjct: 67 IKYIRVQDQAIEQA--IEETAEQKA 89
>gi|224131146|ref|XP_002321012.1| predicted protein [Populus trichocarpa]
gi|222861785|gb|EEE99327.1| predicted protein [Populus trichocarpa]
Length = 151
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLP 72
+ELKNG +G + D MN HL+ V T K G +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRTPECYIRGNTIKYLRVPDEV- 75
Query: 73 LETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRG------GRGGGRG 113
ID R R+ G G RGRG +G GRG
Sbjct: 76 -----IDKVQEETKSRSDRKPPGVGRGRGRGREDGPGGRPAKGIGRG 117
>gi|301753917|ref|XP_002912773.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like
[Ailuropoda melanoleuca]
Length = 152
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|449279546|gb|EMC87118.1| U6 snRNA-associated Sm-like protein LSm4, partial [Columba livia]
Length = 138
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|118790653|ref|XP_318746.3| AGAP009687-PA [Anopheles gambiae str. PEST]
gi|116118049|gb|EAA14138.4| AGAP009687-PA [Anopheles gambiae str. PEST]
Length = 157
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +L+ V T K G + + +RG+ I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVSCDTWMNINLREVICTSKDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 71 L 71
+
Sbjct: 75 V 75
>gi|58393584|ref|XP_320178.2| AGAP012380-PA [Anopheles gambiae str. PEST]
gi|55234277|gb|EAA00211.2| AGAP012380-PA [Anopheles gambiae str. PEST]
Length = 143
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHVVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVGNLENVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
IR+ ILPD ++ +AP K + G G GRG
Sbjct: 67 KIRFLILPD-------MLKNAPMFK------KQGAKTGTAGRG 96
>gi|19113071|ref|NP_596279.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|12230213|sp|O14352.1|LSM4_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|2276355|emb|CAB10801.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe]
Length = 121
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G ++ D MN L+ V T+ G + L +RGNNI+Y + D
Sbjct: 15 ILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDE 74
Query: 71 L 71
+
Sbjct: 75 V 75
>gi|348673931|gb|EGZ13750.1| hypothetical protein PHYSODRAFT_347058 [Phytophthora sojae]
Length = 153
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN +L+ V T K G + +RGN I+Y +P+ +
Sbjct: 19 VELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEI 77
>gi|12834762|dbj|BAB23033.1| unnamed protein product [Mus musculus]
Length = 138
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSLDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|299750975|ref|XP_001829959.2| U6 snRNA-associated Sm-like protein LSm4 [Coprinopsis cinerea
okayama7#130]
gi|298409160|gb|EAU91881.2| U6 snRNA-associated Sm-like protein LSm4 [Coprinopsis cinerea
okayama7#130]
Length = 129
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN L+ V T +G L +RG+ I+Y +PD
Sbjct: 15 MLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDRFWKLKECYIRGSTIKYLRVPDQ 74
Query: 71 L 71
L
Sbjct: 75 L 75
>gi|226372266|gb|ACO51758.1| U6 snRNA-associated Sm-like protein LSm4 [Rana catesbeiana]
Length = 140
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|350535801|ref|NP_001232447.1| U6 snRNA-associated Sm-like protein LSm4 [Taeniopygia guttata]
gi|363743848|ref|XP_418245.3| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Gallus
gallus]
gi|197129949|gb|ACH46447.1| putative LSM4 homolog U6 small nuclear RNA associated
[Taeniopygia guttata]
Length = 138
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|157823641|ref|NP_001099543.1| U6 snRNA-associated Sm-like protein LSm4 [Rattus norvegicus]
gi|159032056|ref|NP_056631.2| U6 snRNA-associated Sm-like protein LSm4 [Mus musculus]
gi|12846677|dbj|BAB27261.1| unnamed protein product [Mus musculus]
gi|20073103|gb|AAH26747.1| Lsm4 protein [Mus musculus]
gi|26354156|dbj|BAC40708.1| unnamed protein product [Mus musculus]
gi|74198684|dbj|BAE39816.1| unnamed protein product [Mus musculus]
gi|74228648|dbj|BAE25390.1| unnamed protein product [Mus musculus]
gi|148696910|gb|EDL28857.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Mus musculus]
gi|149036057|gb|EDL90723.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_a [Rattus norvegicus]
Length = 138
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|409044160|gb|EKM53642.1| hypothetical protein PHACADRAFT_260106 [Phanerochaete carnosa
HHB-10118-sp]
Length = 130
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN L+ V T +G + L +RG+ I+Y +PD L
Sbjct: 17 VELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDKFWKLKECYIRGSTIKYLRVPDQL 75
>gi|147902804|ref|NP_001088454.1| LSM4 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|54311207|gb|AAH84779.1| LOC495318 protein [Xenopus laevis]
Length = 138
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|45361593|ref|NP_989371.1| LSM4 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|39849973|gb|AAH64199.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Xenopus (Silurana) tropicalis]
gi|52078460|gb|AAH82491.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Xenopus (Silurana) tropicalis]
Length = 138
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|332019235|gb|EGI59745.1| U6 snRNA-associated Sm-like protein LSm4 [Acromyrmex echinatior]
Length = 138
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
+ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 3 LTLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 62
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 63 STIKYLRIPDEV 74
>gi|344241344|gb|EGV97447.1| U6 snRNA-associated Sm-like protein LSm4 [Cricetulus griseus]
Length = 124
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +L+ V T + G + + +RG+ I+Y +PD
Sbjct: 1 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 60
Query: 71 L 71
+
Sbjct: 61 I 61
>gi|17533617|ref|NP_495514.1| Protein LSM-4 [Caenorhabditis elegans]
gi|12230257|sp|Q19952.1|LSM4_CAEEL RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|351065126|emb|CCD66279.1| Protein LSM-4 [Caenorhabditis elegans]
Length = 123
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G ++ D MN HL V T K G + + +RG+ I+Y +P+++
Sbjct: 18 VELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRIPETV 76
>gi|330798959|ref|XP_003287516.1| hypothetical protein DICPUDRAFT_47407 [Dictyostelium purpureum]
gi|325082462|gb|EGC35943.1| hypothetical protein DICPUDRAFT_47407 [Dictyostelium purpureum]
Length = 168
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTT-LDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +L+ V T K + + S +RGN I+Y +PD
Sbjct: 15 IMVELKNGETYNGYLINCDNWMNINLRNVIRTSKDSDKFWKIQSCYIRGNTIKYISVPDE 74
Query: 71 LPLETLLIDDAP---------------RSKGKRDS 90
+ L++++ R +G+ DS
Sbjct: 75 II--DLVVEEEQISRPHNLSKGDNTTGRGRGRGDS 107
>gi|443922752|gb|ELU42142.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 137
Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN L+ V T +G L +RG+ I+Y +PD+
Sbjct: 25 MLVELKNGETFNGHLVNCDTFMNITLREVYQTSPEGDRFWKLKECYIRGSMIKYLRVPDA 84
Query: 71 L 71
L
Sbjct: 85 L 85
>gi|336372413|gb|EGO00752.1| hypothetical protein SERLA73DRAFT_121184 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385171|gb|EGO26318.1| hypothetical protein SERLADRAFT_367910 [Serpula lacrymans var.
lacrymans S7.9]
Length = 115
Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN L+ V T +G L +RG+ I+Y +PD+L
Sbjct: 17 VELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDRFWKLRECYIRGSTIKYLRVPDTL 75
>gi|389583620|dbj|GAB66354.1| U6 snRNA associated Sm-like protein Lsm4 [Plasmodium cynomolgi
strain B]
Length = 153
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 4 LMKLSH-ETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNN 61
L+K S + V +ELKNG G + D MN H+K + T K G + + +RGN+
Sbjct: 34 LLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGNS 93
Query: 62 IRYYILPDSLPLETLLIDDAPRSKGK 87
++Y + D + I++ K +
Sbjct: 94 VKYIRVQDQAIDQA--IEETNEQKAR 117
>gi|307178481|gb|EFN67170.1| U6 snRNA-associated Sm-like protein LSm4 [Camponotus floridanus]
Length = 139
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
+ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LTLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEV 75
>gi|395513176|ref|XP_003760805.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Sarcophilus
harrisii]
Length = 152
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 17 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 76
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 77 STIKYLRIPDEI 88
>gi|237842601|ref|XP_002370598.1| U6 snRNA associated Sm-like protein LSm4, putative [Toxoplasma
gondii ME49]
gi|211968262|gb|EEB03458.1| U6 snRNA associated Sm-like protein LSm4, putative [Toxoplasma
gondii ME49]
gi|221502719|gb|EEE28439.1| small nuclear ribonucleoprotein sm, putative [Toxoplasma gondii
VEG]
Length = 214
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELK+G G + D MN HLK T K G+ L +RGN ++Y L D
Sbjct: 16 MMVELKSGETYSGLLASCDGFMNLHLKDSVCTSKDGERFWKLSECYIRGNMVKYIRLQDE 75
Query: 71 LPLET 75
+ LET
Sbjct: 76 V-LET 79
>gi|355755618|gb|EHH59365.1| hypothetical protein EGM_09452, partial [Macaca fascicularis]
Length = 138
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 3 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 62
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 63 STIKYLRIPDEI 74
>gi|355703322|gb|EHH29813.1| Glycine-rich protein, partial [Macaca mulatta]
gi|440903986|gb|ELR54561.1| U6 snRNA-associated Sm-like protein LSm4, partial [Bos grunniens
mutus]
Length = 139
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|255946281|ref|XP_002563908.1| Pc20g14300 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588643|emb|CAP86759.1| Pc20g14300 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 121
Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHL-KTVKMTVKGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG ++G + D MN L + V+ + +G L + +RGNNI+Y +P+
Sbjct: 15 MLVELKNGETLNGHLVTCDNFMNLILREVVQTSPEGDRFFRLPEVYIRGNNIKYLRVPEE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|355477275|ref|NP_001239058.1| U6 snRNA-associated Sm-like protein LSm4 isoform 2 [Homo sapiens]
gi|395750752|ref|XP_003779150.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Pongo abelii]
gi|397493883|ref|XP_003817825.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Pan paniscus]
gi|402904784|ref|XP_003915220.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Papio anubis]
gi|426387788|ref|XP_004060344.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Gorilla gorilla gorilla]
gi|431922013|gb|ELK19186.1| U6 snRNA-associated Sm-like protein LSm4 [Pteropus alecto]
Length = 125
Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN +L+ V T + G + + +RG+ I+Y +PD +
Sbjct: 3 VELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEI 61
>gi|425765914|gb|EKV04555.1| U6 snRNA-associated Sm-like protein LSM4, putative [Penicillium
digitatum PHI26]
gi|425779249|gb|EKV17325.1| U6 snRNA-associated Sm-like protein LSM4, putative [Penicillium
digitatum Pd1]
Length = 121
Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG ++G + D MN L+ V T +G L + +RGNNI+Y +P+ +
Sbjct: 17 VELKNGETLNGHLVTCDNFMNLILREVVQTSPEGDRFFRLPEVYIRGNNIKYLRVPEEI 75
>gi|6912486|ref|NP_036453.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Homo sapiens]
gi|78369240|ref|NP_001030513.1| U6 snRNA-associated Sm-like protein LSm4 [Bos taurus]
gi|160837874|ref|NP_001104275.1| LSM4 homolog, U6 small nuclear RNA associated [Canis lupus
familiaris]
gi|386780610|ref|NP_001247502.1| U6 snRNA-associated Sm-like protein LSm4 [Macaca mulatta]
gi|296233291|ref|XP_002761949.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Callithrix
jacchus]
gi|297704123|ref|XP_002828970.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Pongo abelii]
gi|338718643|ref|XP_001500651.3| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Equus
caballus]
gi|397493881|ref|XP_003817824.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Pan paniscus]
gi|402904782|ref|XP_003915219.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Papio anubis]
gi|410950868|ref|XP_003982124.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Felis catus]
gi|426387786|ref|XP_004060343.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Gorilla gorilla gorilla]
gi|10720082|sp|Q9Y4Z0.1|LSM4_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm4; AltName:
Full=Glycine-rich protein; Short=GRP
gi|109892572|sp|Q3ZBK6.1|LSM4_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm4
gi|5919149|gb|AAD56228.1|AF182290_1 U6 snRNA-associated Sm-like protein LSm4 [Homo sapiens]
gi|6563244|gb|AAF17216.1|AF117235_1 glycine-rich protein [Homo sapiens]
gi|9623197|gb|AAF90055.1|AF251218_1 LSm4 autoantigen [Homo sapiens]
gi|5262858|emb|CAB45867.1| Lsm4 protein [Homo sapiens]
gi|12653237|gb|AAH00387.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|13177763|gb|AAH03652.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|18645159|gb|AAH22198.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|23273864|gb|AAH23665.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|73587230|gb|AAI03244.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|119605092|gb|EAW84686.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|190690627|gb|ACE87088.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
protein [synthetic construct]
gi|190691985|gb|ACE87767.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
protein [synthetic construct]
gi|208966682|dbj|BAG73355.1| LSM4 homolog, U6 small nuclear RNA associated [synthetic
construct]
gi|296486080|tpg|DAA28193.1| TPA: U6 snRNA-associated Sm-like protein LSm4 [Bos taurus]
gi|380784377|gb|AFE64064.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Macaca
mulatta]
gi|383408443|gb|AFH27435.1| U6 snRNA-associated Sm-like protein LSm4 [Macaca mulatta]
gi|410214894|gb|JAA04666.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410249724|gb|JAA12829.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410289766|gb|JAA23483.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410328789|gb|JAA33341.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
Length = 139
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|410921860|ref|XP_003974401.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Takifugu
rubripes]
Length = 147
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 8 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 67
Query: 60 NNIRYYILPDSLPLETLLIDDAPRSKGK-----RDSRRGGGAGGARGRGGRGGRGGGRGG 114
+ I+Y +PD + ++ + SKG+ + +++ G G GRG G RG G G
Sbjct: 68 STIKYLRIPDEI---IDMVKEDVLSKGRGRGGAQQNKQQGKGRGGAGRGVFGSRGRGLTG 124
Query: 115 RGRG 118
GRG
Sbjct: 125 PGRG 128
>gi|126345432|ref|XP_001373339.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like, partial
[Monodelphis domestica]
Length = 124
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN +L+ V T + G + + +RG+ I+Y +PD +
Sbjct: 2 VELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEI 60
>gi|346325131|gb|EGX94728.1| U6 snRNA-associated Sm-like protein LSM4, putative [Cordyceps
militaris CM01]
Length = 163
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHL-KTVKMTVKGKEPTTLDSISLRGNNIRY 64
+ +ELKNG ++G + D MN L + V+ + +G + L + ++GNNI+Y
Sbjct: 50 MLVELKNGETLNGHLVNCDTWMNLTLTQVVQTSPEGDKFMRLKEVYVKGNNIKY 103
>gi|358058113|dbj|GAA96092.1| hypothetical protein E5Q_02753 [Mixia osmundae IAM 14324]
Length = 123
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + G D MN LK V T G + L L+G+ I+Y + D+
Sbjct: 15 MLVELKNGETFNGHLSGADNFMNLTLKEVYQTSANGDQFWKLPECYLKGHMIKYVRVADN 74
Query: 71 L 71
+
Sbjct: 75 V 75
>gi|383858764|ref|XP_003704869.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Megachile
rotundata]
Length = 158
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 17/102 (16%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +L+ V T + G + + +RG+ I+Y +PD
Sbjct: 34 MLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 93
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGR 112
+ D + +RGRG GRG +
Sbjct: 94 VI----------------DMVKEDIQMKSRGRGEMKGRGQNQ 119
>gi|321254335|ref|XP_003193040.1| hypothetical protein CGB_C7440C [Cryptococcus gattii WM276]
gi|317459509|gb|ADV21253.1| hypothetical protein CNBC2050 [Cryptococcus gattii WM276]
Length = 141
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMT-VKGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN L+ V T G+ + + ++GN I+Y+ + D +
Sbjct: 17 VELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFIKGNIIKYFRIADDI 75
>gi|443711054|gb|ELU05001.1| hypothetical protein CAPTEDRAFT_200433 [Capitella teleta]
Length = 136
Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +++ V T + G + +RG+ I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVSCDNWMNINMREVICTSRDGDRFWRMPECYVRGSTIKYLRIPDE 74
Query: 71 LPLETLLIDDAPRSKGKRD 89
+ ++ + D+ + KG+ D
Sbjct: 75 I-IDMVKEDNMMKHKGRVD 92
>gi|326432761|gb|EGD78331.1| hypothetical protein PTSG_09397 [Salpingoeca sp. ATCC 50818]
Length = 115
Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN L+ V +T K G L +RG+ I+Y LPD
Sbjct: 15 MLVELKNGESYNGHLVNCDHYMNIILRGVTLTSKDGDRFWKLKECYIRGSTIKYLRLPDE 74
Query: 71 L 71
+
Sbjct: 75 I 75
>gi|209732980|gb|ACI67359.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 127
Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMANITVTHRDGRVAQLEQVYIRGS 66
Query: 61 NIRYYILPDSL 71
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|346469961|gb|AEO34825.1| hypothetical protein [Amblyomma maculatum]
Length = 142
Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEV 75
>gi|209731578|gb|ACI66658.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 127
Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 5 MKLSHE----TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMANITVTHRDGRVAQLEQVYIRGS 66
Query: 61 NIRYYILPDSL 71
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|119605093|gb|EAW84687.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Homo sapiens]
Length = 163
Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 28 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 87
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 88 STIKYLRIPDEI 99
>gi|350409693|ref|XP_003488818.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Bombus
impatiens]
gi|380028027|ref|XP_003697713.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Apis
florea]
Length = 139
Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +L+ V T + G + + +RG+ I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
Query: 71 L 71
+
Sbjct: 75 V 75
>gi|427784849|gb|JAA57876.1| Putative small nuclear ribonucleoprotein snrnp [Rhipicephalus
pulchellus]
Length = 142
Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEV 75
>gi|348558677|ref|XP_003465143.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Cavia
porcellus]
Length = 139
Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|344283091|ref|XP_003413306.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Loxodonta africana]
Length = 151
Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 16 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 75
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 76 STIKYLRIPDEI 87
>gi|189197851|ref|XP_001935263.1| hypothetical protein PTRG_04930 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187981211|gb|EDU47837.1| hypothetical protein PTRG_04930 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 131
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHL-KTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71
+ELK+G ++G + D MN L + V+ + G + L I +RG+ I+Y +PD +
Sbjct: 17 VELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMKLPEIYVRGSTIKYLRVPDEI 75
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.141 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,584,021,831
Number of Sequences: 23463169
Number of extensions: 135835160
Number of successful extensions: 3317748
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 26118
Number of HSP's successfully gapped in prelim test: 13168
Number of HSP's that attempted gapping in prelim test: 1826897
Number of HSP's gapped (non-prelim): 996886
length of query: 129
length of database: 8,064,228,071
effective HSP length: 95
effective length of query: 34
effective length of database: 10,130,194,312
effective search space: 344426606608
effective search space used: 344426606608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 71 (32.0 bits)