BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15782
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VU02|SMD1_DROME Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila
melanogaster GN=SmD1 PE=1 SV=1
Length = 124
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 80/86 (93%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQ+HGTI GVDVAMNTHLK+V+MT+K ++P L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPLETLLIDD P+SK K+
Sbjct: 66 RYFILPDSLPLETLLIDDTPKSKTKK 91
>sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1
PE=2 SV=1
Length = 119
Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKK 91
>sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis
GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKK 91
>sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1
PE=1 SV=1
Length = 119
Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKK 91
>sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1
PE=3 SV=1
Length = 119
Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 77/86 (89%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETVTIELKNGTQVHGTI GVDV+MNTHLK VKMT+K +EP L+++S+RGNNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RY+ILPDSLPL+TLL+D P+ K K+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKK 91
>sp|Q10013|SMD1_CAEEL Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis
elegans GN=snr-3 PE=3 SV=1
Length = 126
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 70/83 (84%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKLSHETV IELKNGTQV GTI GVDVAMNTHL+ V MTVK KEP LD++S+RGNNI
Sbjct: 6 FLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSK 85
RY ILPD L L+TLLIDD PR K
Sbjct: 66 RYIILPDPLALDTLLIDDEPRKK 88
>sp|O42661|SMD1_SCHPO Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd1 PE=1 SV=1
Length = 117
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 76/86 (88%)
Query: 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNI 62
FLMKL++ETV+IELKNGT VHGTI VD+ MNTHLK VKMTVKG+EP ++++S+RGNNI
Sbjct: 6 FLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNI 65
Query: 63 RYYILPDSLPLETLLIDDAPRSKGKR 88
RYYILPDSLPL+TLLIDD+ + K K+
Sbjct: 66 RYYILPDSLPLDTLLIDDSTKPKQKK 91
>sp|Q02260|SMD1_YEAST Small nuclear ribonucleoprotein Sm D1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD1 PE=1 SV=1
Length = 146
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 69/146 (47%), Gaps = 31/146 (21%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK--------------- 45
+NFL KL +E VTIELKNGT V GT+Q V MN L VK+T+
Sbjct: 4 VNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMA 63
Query: 46 ------GKEPT------TLDSISLRGNNIRYYILPDSLPLETLLIDDAPRSKGKRDSRRG 93
G++PT +L I++RGN IR ILPDSL L++LL+D K RR
Sbjct: 64 SLYLTGGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVD----QKQLNSLRRS 119
Query: 94 GGAGGARGRGGRGGRGGGRGGRGRGG 119
G + R G R R G
Sbjct: 120 GQIANDPSKKRRRDFGAPANKRPRRG 145
>sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana
tabacum PE=2 SV=1
Length = 146
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRVPDE 74
Query: 71 LPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGGRGGRGGGRGGRGRG 118
+ ID R R+ G G AR RGGR GR +G G
Sbjct: 75 V------IDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIG 116
>sp|Q9UUC6|SMD3_SCHPO Small nuclear ribonucleoprotein Sm D3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd3 PE=1 SV=1
Length = 97
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 1 MNFLMKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSIS 56
M+ +KL HET VT+EL+NG+ G + + MN ++ + +T + + LD +
Sbjct: 1 MSLCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVY 60
Query: 57 LRGNNIRYYILPDSL 71
+RG++IR+ I+PD L
Sbjct: 61 IRGSHIRFLIVPDML 75
>sp|Q17348|SMD3_CAEEL Small nuclear ribonucleoprotein Sm D3 OS=Caenorhabditis elegans
GN=snr-1 PE=2 SV=2
Length = 136
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT+E G G + + MN L +T + LD++ +RGN
Sbjct: 8 IKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGN 67
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGG---GAGGARGRGGRGGRGGGRGGRGR 117
IR+ ILPD ++ +AP K +++G G GG R GRG R GR
Sbjct: 68 KIRFMILPD-------MLKNAPMFKNIGRAQKGAIGMGLGGLDQR-GRGRGTAFRRPMGR 119
Query: 118 GGPRGRGGP 126
GGPRG P
Sbjct: 120 GGPRGMSRP 128
>sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4 OS=Dictyostelium
discoideum GN=lsm4 PE=3 SV=1
Length = 177
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP-TTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G + D MN +LK V T K + + S +RGN I+Y +PD
Sbjct: 15 IMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYIRGNTIKYISVPDE 74
Query: 71 L------PLETLLI-----DDAPRSKGKRDSRRGGGAGGARGRG 103
+ +TL +D+ R +G+ D G G G A GRG
Sbjct: 75 IIDLVAEEEQTLRTTYQQRNDSNRGRGRGDGFAGRGRGDASGRG 118
>sp|P38203|LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM2 PE=1
SV=1
Length = 95
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPT--TLDSISLR 58
+F L + V +ELKN ++ GT+Q VD +N L + T + K P ++ +I +R
Sbjct: 4 FSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIR 63
Query: 59 GNNIRYYILPDSLPLETLLIDDAPR 83
G+ +RY L ++ ++T L+ DA R
Sbjct: 64 GSTVRYVYLNKNM-VDTNLLQDATR 87
>sp|Q54F84|Y1015_DICDI Putative uncharacterized protein DDB_G0291015 OS=Dictyostelium
discoideum GN=DDB_G0291015 PE=4 SV=1
Length = 137
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMT---VKGKEPTTLDSISLRGNNIRYYILP 68
+TI+L++ +++GTI VD +N L K+T K K + I ++ NIR+ +P
Sbjct: 43 ITIQLRSNCEIYGTITNVDAYLNIELSDAKLTNTRYKNKRDEHVQEILIQSRNIRFIQIP 102
Query: 69 DSLPLETLL 77
D + L +LL
Sbjct: 103 DKIDLNSLL 111
>sp|P62323|SMD3_XENLA Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3
PE=2 SV=1
Length = 126
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
IR+ ILPD ++ +AP K ++ +G GAG RG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMKNKNQGSGAG--RGKAA 101
>sp|P62320|SMD3_MOUSE Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3
PE=1 SV=1
Length = 126
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
IR+ ILPD ++ +AP K ++ +G GAG RG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMKNKNQGSGAG--RGKAA 101
>sp|P62318|SMD3_HUMAN Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3
PE=1 SV=1
Length = 126
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE VT E G G + + MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRGG 104
IR+ ILPD ++ +AP K ++ +G GAG RG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMKNKNQGSGAG--RGKAA 101
>sp|Q54TF6|LSM2_DICDI Probable U6 snRNA-associated Sm-like protein LSm2
OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1
Length = 117
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEP--TTLDSISLRGNNIRYYILP- 68
+T+ELKN + G +Q VD +N LK +K+ + K P ++ + +RG+ +RY LP
Sbjct: 15 ITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVVRYVHLPA 74
Query: 69 DSLPLETL 76
+ + +ETL
Sbjct: 75 EDVDVETL 82
>sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa
subsp. japonica GN=Os01g0256900 PE=2 SV=1
Length = 147
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G + D MN HL+ V T K G + + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEV 75
>sp|Q969L4|LSM10_HUMAN U7 snRNA-associated Sm-like protein LSm10 OS=Homo sapiens
GN=LSM10 PE=1 SV=1
Length = 123
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 13 TIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLP 72
T++L++ + HG I VD MN L V T + LD + + G N+RY +PD +
Sbjct: 30 TVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTGRNVRYVHIPDDVN 89
Query: 73 LETLL 77
+ + +
Sbjct: 90 ITSTI 94
>sp|O44437|SMD3_DROME Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanogaster
GN=SmD3 PE=1 SV=1
Length = 151
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 5 MKLSHET----VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGN 60
+K+ HE +T E G G + + MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 61 NIRYYILPDSLPLETLLIDDAPRSKGKRDSRRGGGAGGARGRG 103
IR+ ILPD ++ +AP K + G G GG GRG
Sbjct: 67 KIRFLILPD-------MLKNAPMFK----KQTGKGLGGTAGRG 98
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus
sylvatica GN=LSM4 PE=2 SV=1
Length = 148
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELK+G +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYIRGNTIKYLRVPDEV 75
>sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4
PE=2 SV=1
Length = 137
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm4 PE=1 SV=1
Length = 121
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 12 VTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPDS 70
+ +ELKNG +G ++ D MN L+ V T+ G + L +RGNNI+Y + D
Sbjct: 15 ILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDE 74
Query: 71 L 71
+
Sbjct: 75 V 75
>sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4
OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1
Length = 123
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 IELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSL 71
+ELKNG +G ++ D MN HL V T K G + + +RG+ I+Y +P+++
Sbjct: 18 VELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRIPETV 76
>sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4
PE=1 SV=1
Length = 139
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4
PE=2 SV=1
Length = 139
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRG 59
++ L + + +ELKNG +G + D MN +L+ V T + G + + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query: 60 NNIRYYILPDSL 71
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.141 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,477,349
Number of Sequences: 539616
Number of extensions: 3180532
Number of successful extensions: 83727
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2007
Number of HSP's successfully gapped in prelim test: 621
Number of HSP's that attempted gapping in prelim test: 22731
Number of HSP's gapped (non-prelim): 34851
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)