Query psy15782
Match_columns 129
No_of_seqs 182 out of 1112
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 21:13:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b34_A Protein (small nuclear 100.0 7.2E-32 2.5E-36 188.4 9.2 87 1-87 4-90 (119)
2 2y9a_D Small nuclear ribonucle 100.0 1.1E-28 3.7E-33 173.8 6.6 85 1-85 7-91 (126)
3 1d3b_A Protein (small nuclear 99.9 8E-24 2.7E-28 136.6 8.9 68 2-69 8-75 (75)
4 4emh_A Probable U6 snRNA-assoc 99.9 1E-22 3.5E-27 139.2 8.8 71 1-71 18-89 (105)
5 1ljo_A Archaeal SM-like protei 99.8 5.1E-21 1.8E-25 123.7 8.2 69 2-70 8-77 (77)
6 3s6n_F Small nuclear ribonucle 99.8 1.2E-20 4.2E-25 124.6 8.9 70 2-71 9-78 (86)
7 1i4k_A Putative snRNP SM-like 99.8 1.1E-20 3.8E-25 122.0 8.4 69 2-70 7-75 (77)
8 1h64_1 SnRNP SM-like protein; 99.8 1.1E-20 3.7E-25 121.5 8.0 69 2-70 7-75 (75)
9 1n9r_A SMF, small nuclear ribo 99.8 2.2E-20 7.6E-25 125.0 8.7 69 1-69 23-92 (93)
10 1th7_A SnRNP-2, small nuclear 99.8 3.6E-20 1.2E-24 120.8 8.3 69 2-70 12-80 (81)
11 3s6n_G Small nuclear ribonucle 99.8 6.4E-20 2.2E-24 118.4 8.1 69 2-70 7-75 (76)
12 4emk_B U6 snRNA-associated SM- 99.8 5.6E-20 1.9E-24 118.3 7.3 68 2-69 7-74 (75)
13 1i8f_A Putative snRNP SM-like 99.8 1.1E-19 3.9E-24 118.5 7.9 67 2-69 14-80 (81)
14 1mgq_A SM-like protein; LSM, R 99.8 2.5E-19 8.6E-24 117.4 8.7 66 1-66 17-82 (83)
15 4emk_A U6 snRNA-associated SM- 99.8 4.4E-19 1.5E-23 118.9 9.0 68 2-69 23-91 (94)
16 1m5q_A SMAP3, small nuclear ri 99.7 2.7E-18 9.3E-23 121.2 7.2 67 1-71 2-68 (130)
17 1d3b_B Protein (small nuclear 99.7 6.3E-18 2.1E-22 112.2 7.4 69 2-70 7-85 (91)
18 3bw1_A SMX4 protein, U6 snRNA- 99.7 2.8E-17 9.7E-22 110.4 8.8 70 2-71 13-89 (96)
19 3pgw_B SM B; protein-RNA compl 99.7 4.8E-17 1.6E-21 123.9 11.0 70 2-71 7-86 (231)
20 4emg_A Probable U6 snRNA-assoc 99.7 5.7E-17 2E-21 108.3 9.3 68 1-68 11-91 (93)
21 2fwk_A U6 snRNA-associated SM- 99.7 2.8E-17 9.5E-22 114.7 5.5 69 2-70 31-114 (121)
22 3s6n_E Small nuclear ribonucle 99.7 3.4E-17 1.2E-21 109.3 5.6 68 2-69 19-91 (92)
23 4emk_C U6 snRNA-associated SM- 99.7 1.9E-16 6.5E-21 109.3 9.1 69 2-70 26-101 (113)
24 1b34_B Protein (small nuclear 99.6 3.3E-16 1.1E-20 108.7 7.2 69 2-70 30-114 (118)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.6 2.1E-07 7.3E-12 60.9 7.6 62 3-70 11-73 (86)
26 3u28_C H/ACA ribonucleoprotein 98.0 2.2E-06 7.4E-11 58.7 2.6 67 3-77 41-113 (114)
27 3ahu_A Protein HFQ; SM-like mo 97.2 0.0014 4.8E-08 41.9 7.1 58 3-72 15-74 (78)
28 2qtx_A Uncharacterized protein 97.1 0.00081 2.8E-08 42.3 4.6 33 3-35 17-51 (71)
29 2ylb_A Protein HFQ; RNA-bindin 97.1 0.0033 1.1E-07 39.8 7.5 56 3-71 13-70 (74)
30 1u1s_A HFQ protein; SM-like ba 97.0 0.00063 2.1E-08 43.9 3.7 57 3-72 11-69 (82)
31 1kq1_A HFQ, HOST factor for Q 96.9 0.00094 3.2E-08 42.6 4.0 58 2-71 10-69 (77)
32 2y90_A Protein HFQ; RNA-bindin 96.9 0.0032 1.1E-07 42.3 6.7 58 2-72 12-71 (104)
33 3sb2_A Protein HFQ; SM-like, R 96.9 0.0015 5.2E-08 41.8 4.9 58 3-73 12-71 (79)
34 2vxe_A CG10686-PA; EDC3, CAR-1 96.6 0.018 6.2E-07 37.5 8.4 63 7-69 11-83 (88)
35 4a53_A EDC3; RNA binding prote 96.3 0.0054 1.8E-07 42.3 4.7 37 5-41 8-45 (125)
36 2fb7_A SM-like protein, LSM-14 96.1 0.013 4.6E-07 38.6 5.7 62 6-67 16-87 (95)
37 1y96_B Gemin7, SIP3, GEM-assoc 95.8 0.032 1.1E-06 36.0 6.3 60 2-67 22-83 (85)
38 3hfo_A SSR3341 protein; HFQ, S 94.3 0.044 1.5E-06 34.2 3.5 33 1-33 11-45 (70)
39 2vc8_A Enhancer of mRNA-decapp 93.9 0.24 8.1E-06 31.8 6.4 60 5-67 5-66 (84)
40 1ycy_A Conserved hypothetical 93.6 0.38 1.3E-05 29.4 6.6 60 3-67 10-69 (71)
41 3hfn_A ASL2047 protein; HFQ, S 93.4 0.067 2.3E-06 33.5 3.1 33 1-33 13-47 (72)
42 2hvy_B GAR1, small nucleolar R 79.8 2.5 8.5E-05 28.0 4.1 28 13-45 36-63 (104)
43 2e12_A SM-like motif, hypothet 75.1 4 0.00014 26.5 3.9 22 6-27 24-46 (101)
44 1ib8_A Conserved protein SP14. 71.2 3.5 0.00012 29.2 3.3 29 4-32 99-131 (164)
45 3rux_A BIRA bifunctional prote 69.5 7.4 0.00025 29.4 5.0 32 7-38 222-253 (270)
46 3by7_A Uncharacterized protein 67.2 23 0.0008 23.1 7.5 56 13-70 7-77 (100)
47 2ey4_C Small nucleolar RNP sim 62.9 6.9 0.00024 24.7 3.1 22 13-35 36-57 (82)
48 4hcz_A PHD finger protein 1; p 61.7 13 0.00044 22.0 3.9 25 8-32 6-30 (58)
49 2xk0_A Polycomb protein PCL; t 54.5 34 0.0012 20.9 6.2 20 8-27 18-37 (69)
50 1nh2_D Transcription initiatio 52.8 23 0.00077 24.0 4.5 30 16-45 55-87 (121)
51 3v4h_A Hypothetical protein; s 51.1 25 0.00086 25.2 4.8 59 8-70 99-164 (185)
52 1sg5_A ORF, hypothetical prote 51.1 6.4 0.00022 25.0 1.5 24 6-29 22-45 (86)
53 2eqj_A Metal-response element- 51.0 24 0.00081 21.4 3.9 25 8-32 16-40 (66)
54 1nvp_D Transcription initiatio 48.0 32 0.0011 22.7 4.6 29 16-44 51-82 (108)
55 2e5p_A Protein PHF1, PHD finge 47.1 30 0.001 21.0 3.9 25 8-32 12-36 (68)
56 2ej9_A Putative biotin ligase; 45.3 35 0.0012 25.0 4.9 30 7-36 190-219 (237)
57 1o9y_A HRCQ2; secretory protei 44.4 37 0.0013 20.9 4.3 35 5-39 45-79 (84)
58 2m0o_A PHD finger protein 1; t 42.6 12 0.00042 23.4 1.7 26 8-33 29-54 (79)
59 3uby_A DNA-3-methyladenine gly 40.9 27 0.00094 25.9 3.7 29 5-33 21-49 (219)
60 2eay_A Biotin [acetyl-COA-carb 40.5 19 0.00066 26.4 2.9 30 7-38 186-215 (233)
61 2e5q_A PHD finger protein 19; 39.7 32 0.0011 20.6 3.2 25 8-32 10-34 (63)
62 3uep_A YSCQ-C, type III secret 36.1 52 0.0018 20.9 4.1 35 5-39 49-83 (96)
63 2eqn_A Hypothetical protein LO 35.0 33 0.0011 22.2 3.1 29 13-46 55-83 (103)
64 2qqr_A JMJC domain-containing 34.3 49 0.0017 22.2 3.8 23 8-30 8-30 (118)
65 2rm4_A CG6311-PB, DM EDC3; enh 33.0 1E+02 0.0035 20.1 10.2 56 6-65 9-67 (103)
66 1bia_A BIRA bifunctional prote 32.8 68 0.0023 24.4 5.0 31 7-38 271-301 (321)
67 1o6a_A Putative flagellar moto 31.0 62 0.0021 20.4 3.8 35 6-40 50-84 (96)
68 3dgp_B RNA polymerase II trans 29.9 19 0.00065 22.1 1.1 13 21-33 3-15 (71)
69 1zq1_A Glutamyl-tRNA(Gln) amid 29.5 24 0.00083 28.7 2.0 40 2-41 5-55 (438)
70 2dxu_A Biotin--[acetyl-COA-car 28.3 44 0.0015 24.5 3.1 29 8-38 188-216 (235)
71 2v3m_A NAF1; ribosomal protein 25.9 58 0.002 22.1 3.1 27 13-40 62-88 (131)
72 3isu_A RAS GTPase-activating-l 25.7 9 0.00031 26.0 -1.1 52 24-78 36-88 (121)
73 3qw9_A Transforming growth fac 25.6 1.1E+02 0.0037 21.5 4.6 37 11-47 24-60 (176)
74 2d6f_A Glutamyl-tRNA(Gln) amid 24.8 42 0.0014 27.3 2.6 39 2-41 9-55 (435)
75 1q38_A Fibronectin; amyloid fi 24.3 86 0.0029 19.9 3.4 32 15-46 44-75 (89)
76 3he1_A Major exported HCP3 pro 24.2 79 0.0027 22.8 3.7 63 8-73 109-184 (195)
77 1y12_A Hypothetical protein PA 23.0 1.2E+02 0.004 20.9 4.4 41 30-70 98-143 (165)
78 3rkx_A Biotin-[acetyl-COA-carb 23.0 1.1E+02 0.0037 23.5 4.5 31 7-38 277-307 (323)
79 3eaa_A EVPC; T6SS, unknown fun 21.8 68 0.0023 22.1 2.9 41 29-69 94-140 (163)
80 2qs8_A XAA-Pro dipeptidase; am 21.6 1.1E+02 0.0037 23.2 4.3 39 28-66 2-41 (418)
81 4a8c_A Periplasmic PH-dependen 21.5 1.2E+02 0.004 24.1 4.6 31 10-40 88-118 (436)
82 3tee_A Flagella basal BODY P-r 21.2 70 0.0024 23.3 3.0 22 7-28 169-190 (219)
83 1ky9_A Protease DO, DEGP, HTRA 21.0 1.5E+02 0.005 23.7 5.1 31 10-40 111-141 (448)
No 1
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.97 E-value=7.2e-32 Score=188.36 Aligned_cols=87 Identities=75% Similarity=1.158 Sum_probs=75.5
Q ss_pred ChhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCCCccccccCCC
Q psy15782 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDD 80 (129)
Q Consensus 1 ~~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~l~l~~~L~~~ 80 (129)
++||+++++++|+|+|+|+.+|+|+|.+||.|||++|+||+++..++++.+++.++|||+||.||++||.|++|++|.++
T Consensus 4 ~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG~nI~~I~~pd~l~~d~~l~~~ 83 (119)
T 1b34_A 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDV 83 (119)
T ss_dssp HHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCTTCCHHHHTC--
T ss_pred HHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcCCeEEEEEeccccccchhHhhh
Confidence 37999999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred CCccCCC
Q psy15782 81 APRSKGK 87 (129)
Q Consensus 81 ~~~~k~~ 87 (129)
+||+|.+
T Consensus 84 ~pK~k~~ 90 (119)
T 1b34_A 84 EPKVKSK 90 (119)
T ss_dssp -------
T ss_pred ccccccc
Confidence 9887654
No 2
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.95 E-value=1.1e-28 Score=173.77 Aligned_cols=85 Identities=24% Similarity=0.418 Sum_probs=78.7
Q ss_pred ChhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCCCccccccCCC
Q psy15782 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPLETLLIDD 80 (129)
Q Consensus 1 ~~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~l~l~~~L~~~ 80 (129)
++||+++++++|+|||||+++|+|+|.+||.|||++|+||+++..+++...++++|||||+|+||++||.++++++|.++
T Consensus 7 ~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IRGnnI~~I~lpd~l~~~~~l~~~ 86 (126)
T 2y9a_D 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSM 86 (126)
T ss_dssp HHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCSSCSSSSHHHHH
T ss_pred HHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEeCCEEEEEEccccccchHHhhhh
Confidence 37999999999999999999999999999999999999999998888899999999999999999999999999999765
Q ss_pred CCccC
Q psy15782 81 APRSK 85 (129)
Q Consensus 81 ~~~~k 85 (129)
.++.|
T Consensus 87 ~~k~~ 91 (126)
T 2y9a_D 87 KNKNQ 91 (126)
T ss_dssp HHHHC
T ss_pred hhccc
Confidence 54443
No 3
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.90 E-value=8e-24 Score=136.60 Aligned_cols=68 Identities=26% Similarity=0.472 Sum_probs=66.0
Q ss_pred hhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCC
Q psy15782 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd 69 (129)
+||+++++++|+|||||+++|+|+|.+||.|||++|+||+++.++++...++.++|||++|+||++||
T Consensus 8 ~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 8 KVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp HHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEEEEEECC
T ss_pred HHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEEEeCCEEEEEEcCC
Confidence 69999999999999999999999999999999999999999988888999999999999999999997
No 4
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.88 E-value=1e-22 Score=139.18 Aligned_cols=71 Identities=30% Similarity=0.458 Sum_probs=56.5
Q ss_pred ChhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCC-cceecceEEEecCeEEEEEcCCCC
Q psy15782 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGK-EPTTLDSISLRGNNIRYYILPDSL 71 (129)
Q Consensus 1 ~~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~-~~~~l~~~~IrGn~Ir~Ii~pd~l 71 (129)
++||+++++++|+|+|+|+++|.|+|.+||.|||++|+||+++..++ +...++.++|||++|+||++||.+
T Consensus 18 ~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~l 89 (105)
T 4emh_A 18 LTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEV 89 (105)
T ss_dssp --------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC----
T ss_pred HHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHHH
Confidence 47999999999999999999999999999999999999999997776 478999999999999999999986
No 5
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.84 E-value=5.1e-21 Score=123.70 Aligned_cols=69 Identities=25% Similarity=0.367 Sum_probs=64.6
Q ss_pred hhhhhcCCCeEEEEEcCC-cEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCC
Q psy15782 2 NFLMKLSHETVTIELKNG-TQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDS 70 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng-~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~ 70 (129)
.||.++++++|+|+|+|+ ++|.|+|.+||.|||++|+||+++.+.++...++.++|||++|.||+.||+
T Consensus 8 ~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 8 QMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp HHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred HHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEEeCCC
Confidence 689999999999999999 999999999999999999999999887778899999999999999999984
No 6
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.84 E-value=1.2e-20 Score=124.57 Aligned_cols=70 Identities=27% Similarity=0.349 Sum_probs=64.1
Q ss_pred hhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCCC
Q psy15782 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~l 71 (129)
+||+++++++|+|+|+||++|.|+|.+||.|||++|+||+++...++...++.++|||++|+||+.||..
T Consensus 9 ~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG~nI~~i~~~d~~ 78 (86)
T 3s6n_F 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEE 78 (86)
T ss_dssp HHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECGGGEEEEEECC--
T ss_pred HHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeCCeEEEEEeCCcc
Confidence 6899999999999999999999999999999999999999876655678999999999999999999873
No 7
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.83 E-value=1.1e-20 Score=121.99 Aligned_cols=69 Identities=23% Similarity=0.408 Sum_probs=65.6
Q ss_pred hhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCC
Q psy15782 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDS 70 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~ 70 (129)
.||.++++++|+|+|+|+++|.|+|.+||.|||++|+||+++..+.+...++.++|||++|.||+.||.
T Consensus 7 ~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~ 75 (77)
T 1i4k_A 7 DVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAPG 75 (77)
T ss_dssp HHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEECC-
T ss_pred HHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEeCCC
Confidence 689999999999999999999999999999999999999999888788899999999999999999986
No 8
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.83 E-value=1.1e-20 Score=121.53 Aligned_cols=69 Identities=22% Similarity=0.375 Sum_probs=64.5
Q ss_pred hhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCC
Q psy15782 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDS 70 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~ 70 (129)
.||.++++++|+|+|+||++|.|+|.+||.|||++|+||+++..+.+...++.++|||++|.+|..||+
T Consensus 7 ~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 7 DVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp HHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred HHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEEeCCC
Confidence 689999999999999999999999999999999999999999888778899999999999999999874
No 9
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.83 E-value=2.2e-20 Score=125.04 Aligned_cols=69 Identities=30% Similarity=0.342 Sum_probs=63.1
Q ss_pred ChhhhhcCCCeEEEEEcCC-cEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCC
Q psy15782 1 MNFLMKLSHETVTIELKNG-TQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69 (129)
Q Consensus 1 ~~~L~~l~~~~V~VeLkng-~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd 69 (129)
++||.++++++|+|+|+|+ ++|.|+|.+||.|||++|+||+++..+++...++.++|||++|+||..++
T Consensus 23 ~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 23 KPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp ---CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEEEEECC
T ss_pred HHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEEEEeCC
Confidence 4689999999999999999 99999999999999999999999987777789999999999999999886
No 10
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.82 E-value=3.6e-20 Score=120.82 Aligned_cols=69 Identities=22% Similarity=0.300 Sum_probs=64.7
Q ss_pred hhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCC
Q psy15782 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDS 70 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~ 70 (129)
.||.++++++|+|+|+||++|.|+|.+||.|||++|+||+++..+.+...++.++|||++|.+|..+|.
T Consensus 12 ~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 12 KVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp HHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECGGGEEEEEEC--
T ss_pred HHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECCCEEEEEEecCC
Confidence 689999999999999999999999999999999999999999888888999999999999999999874
No 11
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.81 E-value=6.4e-20 Score=118.42 Aligned_cols=69 Identities=20% Similarity=0.346 Sum_probs=53.8
Q ss_pred hhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCC
Q psy15782 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDS 70 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~ 70 (129)
.||.++++++|+|+|+||++|.|+|.+||.|||++|+||+++..+++...++.++|||++|.+|...|.
T Consensus 7 ~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp -------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEECSSSEEEEEC---
T ss_pred HHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEECCCeEEEEEeccC
Confidence 589999999999999999999999999999999999999999888888899999999999999998775
No 12
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.81 E-value=5.6e-20 Score=118.34 Aligned_cols=68 Identities=31% Similarity=0.438 Sum_probs=63.1
Q ss_pred hhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCC
Q psy15782 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd 69 (129)
+||+++++++|+|+|+||++|.|+|.+||.|||++|+||+++...++...++.++|||++|.||...|
T Consensus 7 ~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 7 EFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp HHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEEEGGGSSEEEEC-
T ss_pred HHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEEcCCeEEEEEecC
Confidence 68999999999999999999999999999999999999999877667789999999999999998754
No 13
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.80 E-value=1.1e-19 Score=118.50 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=63.4
Q ss_pred hhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCC
Q psy15782 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPD 69 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd 69 (129)
.||.++++++|+|+|+|+++|.|+|.+||.|||++|+||+++ +..+...++.++|||++|.+|+.+|
T Consensus 14 ~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 14 ATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp HHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEECGGGEEEEEECC
T ss_pred HHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCCcccCCCEEEECCCEEEEEEeCC
Confidence 589999999999999999999999999999999999999999 6667789999999999999999887
No 14
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.80 E-value=2.5e-19 Score=117.39 Aligned_cols=66 Identities=26% Similarity=0.416 Sum_probs=62.9
Q ss_pred ChhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEE
Q psy15782 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYI 66 (129)
Q Consensus 1 ~~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii 66 (129)
+.||.++++++|+|+|+|+++|.|+|.+||.|||++|+||+++..+.+...++.++|||++|.||+
T Consensus 17 ~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~IRG~~I~~i~ 82 (83)
T 1mgq_A 17 LDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYIS 82 (83)
T ss_dssp THHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEE
T ss_pred HHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEECCCEEEEEE
Confidence 468999999999999999999999999999999999999999988878889999999999999986
No 15
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.79 E-value=4.4e-19 Score=118.91 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=63.2
Q ss_pred hhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEe-cCCcceecceEEEecCeEEEEEcCC
Q psy15782 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTV-KGKEPTTLDSISLRGNNIRYYILPD 69 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~-~~~~~~~l~~~~IrGn~Ir~Ii~pd 69 (129)
.||.++++++|+|+|+|+++|.|+|.+||.|||++|+||+++. +.++...++.++|||++|.||+...
T Consensus 23 ~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~~ 91 (94)
T 4emk_A 23 ELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPGG 91 (94)
T ss_dssp HHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEECC
T ss_pred HHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeCC
Confidence 6899999999999999999999999999999999999999998 5667789999999999999998643
No 16
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.74 E-value=2.7e-18 Score=121.20 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=62.5
Q ss_pred ChhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCCC
Q psy15782 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71 (129)
Q Consensus 1 ~~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~l 71 (129)
++||.++++++|+|+|+||++|.|+|.+||.|||++|+||+++. ...++.++|||++|.+|+.||..
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~----~~~lg~v~IRG~nI~~I~~~d~~ 68 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA----GEKFNRVFIMYRYIVHIDSTERR 68 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT----CCEEEEEEECGGGEEEEEECCCC
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc----CCEeceEEEeCCeEEEEEcCCcc
Confidence 36899999999999999999999999999999999999999873 36789999999999999999986
No 17
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.73 E-value=6.3e-18 Score=112.24 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=61.8
Q ss_pred hhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEec----------CCcceecceEEEecCeEEEEEcCCC
Q psy15782 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK----------GKEPTTLDSISLRGNNIRYYILPDS 70 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~----------~~~~~~l~~~~IrGn~Ir~Ii~pd~ 70 (129)
.+|.++++++|+|+|+||++|.|+|.+||.|||++|+||+++.+ ..+...++.++|||++|.+|.+++.
T Consensus 7 ~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 85 (91)
T 1d3b_B 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85 (91)
T ss_dssp CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEEC
T ss_pred HHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCCC
Confidence 47899999999999999999999999999999999999998642 1235789999999999999999876
No 18
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.8e-17 Score=110.36 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=61.8
Q ss_pred hhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecC-------CcceecceEEEecCeEEEEEcCCCC
Q psy15782 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKG-------KEPTTLDSISLRGNNIRYYILPDSL 71 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~-------~~~~~l~~~~IrGn~Ir~Ii~pd~l 71 (129)
.+|.++++++|.|+|+|+.+|.|+|.+||.|||++|+||+++... .....++.++|||++|.+|..++..
T Consensus 13 ~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~~ 89 (96)
T 3bw1_A 13 DLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSED 89 (96)
T ss_dssp HHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC--
T ss_pred HHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCcc
Confidence 589999999999999999999999999999999999999988643 2246799999999999999998873
No 19
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.71 E-value=4.8e-17 Score=123.94 Aligned_cols=70 Identities=21% Similarity=0.228 Sum_probs=62.5
Q ss_pred hhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEec----------CCcceecceEEEecCeEEEEEcCCCC
Q psy15782 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK----------GKEPTTLDSISLRGNNIRYYILPDSL 71 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~----------~~~~~~l~~~~IrGn~Ir~Ii~pd~l 71 (129)
.+|.++++++|.|+|+|+++|.|+|.+||.|||++|+|++++.. ..+...++.++|||+||.+|.+.+.-
T Consensus 7 ~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve~pP 86 (231)
T 3pgw_B 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP 86 (231)
T ss_pred HHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEecCCC
Confidence 47899999999999999999999999999999999999999753 12457899999999999999987663
No 20
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.71 E-value=5.7e-17 Score=108.34 Aligned_cols=68 Identities=16% Similarity=0.283 Sum_probs=60.7
Q ss_pred ChhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecC----C---------cceecceEEEecCeEEEEEc
Q psy15782 1 MNFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKG----K---------EPTTLDSISLRGNNIRYYIL 67 (129)
Q Consensus 1 ~~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~----~---------~~~~l~~~~IrGn~Ir~Ii~ 67 (129)
+.||..+++++|+|+|+++.+|.|+|.+||.|||++|+||+++... + +...++.++|||++|.+|..
T Consensus 11 l~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~I~p 90 (93)
T 4emg_A 11 LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAP 90 (93)
T ss_dssp THHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEEEEC
T ss_pred HHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEEEEe
Confidence 4689999999999999999999999999999999999999988752 2 24789999999999999987
Q ss_pred C
Q psy15782 68 P 68 (129)
Q Consensus 68 p 68 (129)
|
T Consensus 91 ~ 91 (93)
T 4emg_A 91 P 91 (93)
T ss_dssp C
T ss_pred c
Confidence 6
No 21
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.68 E-value=2.8e-17 Score=114.66 Aligned_cols=69 Identities=20% Similarity=0.295 Sum_probs=61.6
Q ss_pred hhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecC---------C-c-----ceecceEEEecCeEEEEE
Q psy15782 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKG---------K-E-----PTTLDSISLRGNNIRYYI 66 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~---------~-~-----~~~l~~~~IrGn~Ir~Ii 66 (129)
.||.++++++|+|+|+|+.+|.|+|.+||.|||++|+||+++..+ + . ...++.++|||++|.+|.
T Consensus 31 ~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv~I~ 110 (121)
T 2fwk_A 31 ALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAMLV 110 (121)
T ss_dssp HHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEEEEE
T ss_pred HHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEEEEE
Confidence 689999999999999999999999999999999999999988743 2 2 567999999999999999
Q ss_pred cCCC
Q psy15782 67 LPDS 70 (129)
Q Consensus 67 ~pd~ 70 (129)
..+.
T Consensus 111 ~~~~ 114 (121)
T 2fwk_A 111 PGGD 114 (121)
T ss_dssp SSSC
T ss_pred ecCC
Confidence 8775
No 22
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.68 E-value=3.4e-17 Score=109.32 Aligned_cols=68 Identities=24% Similarity=0.347 Sum_probs=61.4
Q ss_pred hhhhhcCCCeEEEEE----cCCcEEEEEEEEecccccceEeeEEEEec-CCcceecceEEEecCeEEEEEcCC
Q psy15782 2 NFLMKLSHETVTIEL----KNGTQVHGTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPD 69 (129)
Q Consensus 2 ~~L~~l~~~~V~VeL----kng~~~~G~L~~~D~~mNl~Lkdv~~~~~-~~~~~~l~~~~IrGn~Ir~Ii~pd 69 (129)
.||.++++++|+|+| +++.+|.|+|.+||.|||++|+||+++.. ..+...++.++|||++|.+|..++
T Consensus 19 ~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 19 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp HHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEEEC-
T ss_pred HHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEEeCC
Confidence 689999999999998 99999999999999999999999999874 455678999999999999998764
No 23
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.68 E-value=1.9e-16 Score=109.30 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=56.6
Q ss_pred hhhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecC-------CcceecceEEEecCeEEEEEcCCC
Q psy15782 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKG-------KEPTTLDSISLRGNNIRYYILPDS 70 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~-------~~~~~l~~~~IrGn~Ir~Ii~pd~ 70 (129)
..|.++++++|.|+|+|+.+|.|+|.+||.|||++|+||+++..+ .....++.++|||++|.+|..+|.
T Consensus 26 ~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~ 101 (113)
T 4emk_C 26 LDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDG 101 (113)
T ss_dssp ------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC-
T ss_pred HHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCc
Confidence 468899999999999999999999999999999999999998754 246789999999999999999886
No 24
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.64 E-value=3.3e-16 Score=108.70 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=58.6
Q ss_pred hhhhhcC--CCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCC--------------cceecceEEEecCeEEEE
Q psy15782 2 NFLMKLS--HETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGK--------------EPTTLDSISLRGNNIRYY 65 (129)
Q Consensus 2 ~~L~~l~--~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~--------------~~~~l~~~~IrGn~Ir~I 65 (129)
.||.+++ +++|.|+|+|+.+|.|+|.+||.|||++|+||+++.... ....++.++|||++|.+|
T Consensus 30 ~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nVv~I 109 (118)
T 1b34_B 30 SVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVV 109 (118)
T ss_dssp HHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGGEEEE
T ss_pred HHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEEEEE
Confidence 5788888 599999999999999999999999999999999875321 023589999999999999
Q ss_pred EcCCC
Q psy15782 66 ILPDS 70 (129)
Q Consensus 66 i~pd~ 70 (129)
..++.
T Consensus 110 ~~~~~ 114 (118)
T 1b34_B 110 LRNPL 114 (118)
T ss_dssp EECCC
T ss_pred EeCch
Confidence 99876
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.59 E-value=2.1e-07 Score=60.92 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=53.1
Q ss_pred hhhhcCCCeEEEEEcCCcEEEEEEEEec-ccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCC
Q psy15782 3 FLMKLSHETVTIELKNGTQVHGTIQGVD-VAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDS 70 (129)
Q Consensus 3 ~L~~l~~~~V~VeLkng~~~~G~L~~~D-~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~ 70 (129)
.|+++++|+|.|.|.|+++|+|.|.+|| ..+|+.|.|+ .+...+..++|.|..|..|.+-+.
T Consensus 11 el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~------~~~~~~~~~iI~G~aI~eI~v~~~ 73 (86)
T 1y96_A 11 EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF------LEDGSMSVTGIMGHAVQTVETMNE 73 (86)
T ss_dssp HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE------CTTSCEEEEEECGGGEEEEEEEEC
T ss_pred HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec------ccCCeEEEEEEecceEEEEEEecc
Confidence 4788999999999999999999999999 8999999998 233444678999999998877655
No 26
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=98.03 E-value=2.2e-06 Score=58.68 Aligned_cols=67 Identities=28% Similarity=0.434 Sum_probs=53.8
Q ss_pred hhhhcCCCeE-----EEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCC-Cccccc
Q psy15782 3 FLMKLSHETV-----TIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDS-LPLETL 76 (129)
Q Consensus 3 ~L~~l~~~~V-----~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~-l~l~~~ 76 (129)
+++++.+++| .|.|+|.+.| |+|.+|...+|- +|++.+..+.+...++.. ..++++.|++ |+|+.|
T Consensus 41 lV~k~~~~~VP~fNapVy~enK~~I-GKVdEIFGPin~----~YfsVK~~~gv~a~Sfk~---gdk~YId~~kllPl~rF 112 (114)
T 3u28_C 41 IVCRSINTKIPYFNAPIYLENKTQV-GKVDEILGPLNE----VFFTIKCGDGVQATSFKE---GDKFYIAADKLLPIERF 112 (114)
T ss_dssp EEEEECSSSEECTTCEEECTTCCEE-EEEEEEESBTTS----CEEEEEECTTCCGGGCCT---TCEEEEEGGGEECGGGG
T ss_pred EEEEeCCCCCCCCCCEeEccCCccc-eeEeEEeCCCCc----cEEEEEecCCCccccccc---CCEEEECccccCcHHhc
Confidence 5667776666 8999999999 999999999995 777777777777776654 3666778887 899998
Q ss_pred c
Q psy15782 77 L 77 (129)
Q Consensus 77 L 77 (129)
|
T Consensus 113 l 113 (114)
T 3u28_C 113 L 113 (114)
T ss_dssp C
T ss_pred C
Confidence 8
No 27
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=97.25 E-value=0.0014 Score=41.92 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=40.2
Q ss_pred hhhhcC--CCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCCCc
Q psy15782 3 FLMKLS--HETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLP 72 (129)
Q Consensus 3 ~L~~l~--~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~l~ 72 (129)
||..+. ..+|+|+|.||..++|+|.+||.|+=+ +.. ++. ..+|-...|..|.....++
T Consensus 15 fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~Vl------L~~-~g~-----qqlIYKhAISTI~p~~~v~ 74 (78)
T 3ahu_A 15 FLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVL------LES-EGK-----QQLIYKHAISTFAPQKNVQ 74 (78)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEE------EES-SSC-----EEEEEGGGEEEEEESSCCC
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEE------EEE-CCe-----eEEEEcceEEEEeeccccc
Confidence 666664 678999999999999999999999833 221 211 2345556677776555443
No 28
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=97.08 E-value=0.00081 Score=42.28 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=27.4
Q ss_pred hhhhc--CCCeEEEEEcCCcEEEEEEEEecccccc
Q psy15782 3 FLMKL--SHETVTIELKNGTQVHGTIQGVDVAMNT 35 (129)
Q Consensus 3 ~L~~l--~~~~V~VeLkng~~~~G~L~~~D~~mNl 35 (129)
||..+ ...+|+|+|.||..++|+|.+||.|+=+
T Consensus 17 fLn~~r~~~~~Vtv~L~NG~~l~G~I~~fD~ftVl 51 (71)
T 2qtx_A 17 FEYARRLNGKKVKIFLRNGEVLDAEVTGVSNYEIM 51 (71)
T ss_dssp CCGGGGGTTCEEEEEETTSCEEEEEEEEECSSEEE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEE
Confidence 55554 4567999999999999999999999843
No 29
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.08 E-value=0.0033 Score=39.77 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=40.9
Q ss_pred hhhhcC--CCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCCC
Q psy15782 3 FLMKLS--HETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71 (129)
Q Consensus 3 ~L~~l~--~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~l 71 (129)
||+.+. ..+|+|+|.||..+.|+|.++|.|+=+ +. ++ ...+|-...|.+|.....+
T Consensus 13 ~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vl------L~--~~-----~~~LIYKhAIsTI~p~~~v 70 (74)
T 2ylb_A 13 FLNALRRERVPVSIYLVNGIKLQGQIESFDQFVIL------LK--NT-----VSQMVYKHAISTVVPSRPV 70 (74)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEE------EE--SS-----SEEEEEGGGEEEEEESSCC
T ss_pred HHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEE------EE--CC-----ceEEEEeeeEEEEeEcccc
Confidence 666665 668999999999999999999999832 22 11 3345666778877765544
No 30
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.01 E-value=0.00063 Score=43.91 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=41.3
Q ss_pred hhhhcC--CCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCCCc
Q psy15782 3 FLMKLS--HETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLP 72 (129)
Q Consensus 3 ~L~~l~--~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~l~ 72 (129)
||..+. ..+|+|+|.||..++|+|.+||.|+=+ +. .+ ...+|-...|..|.....+.
T Consensus 11 fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVl------L~-~~------~qqLVYKHAISTI~p~~~v~ 69 (82)
T 1u1s_A 11 YLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVIL------LK-NT------VSQMVYKHAISTVVPSRPVR 69 (82)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEE------EE-SS------SCEEEEGGGEEEEEESSCCC
T ss_pred HHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEE------Ee-cC------ceEEEEeeeeEEEeeccccc
Confidence 666664 668999999999999999999999833 21 11 23456667788777666554
No 31
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.94 E-value=0.00094 Score=42.63 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=38.4
Q ss_pred hhhhhcC--CCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCCC
Q psy15782 2 NFLMKLS--HETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSL 71 (129)
Q Consensus 2 ~~L~~l~--~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~l 71 (129)
.||+.+. ..+|+|+|.||..+.|+|.+||.|+=+ +.. ++. ..+|-...|.+|.....+
T Consensus 10 ~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~Vl------L~~-~g~-----~qLIYKhAISTI~p~~~v 69 (77)
T 1kq1_A 10 KALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVS------LNS-QGK-----QHLIYKHAISTYTVETEG 69 (77)
T ss_dssp HHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEE------EEE-TTE-----EEEEEGGGEEEEEC----
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEE------EEE-CCe-----eEEEEeeeEEEEeECccc
Confidence 3677765 678999999999999999999999833 221 221 234555667776654444
No 32
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=96.92 E-value=0.0032 Score=42.29 Aligned_cols=58 Identities=24% Similarity=0.307 Sum_probs=41.8
Q ss_pred hhhhhcCCC--eEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCCCc
Q psy15782 2 NFLMKLSHE--TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLP 72 (129)
Q Consensus 2 ~~L~~l~~~--~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~l~ 72 (129)
.||+.+..+ +|+|+|.||..+.|+|.+||.|+=+ +. +. ...+|-.-.|.+|.....+.
T Consensus 12 ~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~Vl------L~--~~-----kqqLIYKHAISTI~p~~~v~ 71 (104)
T 2y90_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVIL------LK--NT-----VSQMVYKHAISTVVPSRPVS 71 (104)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEE------EE--SS-----SEEEEEGGGEEEEEESSCCC
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEE------EE--CC-----ceEEEEeeeeEEEeeccccc
Confidence 367777544 7999999999999999999999832 22 11 33456667788877666553
No 33
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.92 E-value=0.0015 Score=41.82 Aligned_cols=58 Identities=22% Similarity=0.317 Sum_probs=41.0
Q ss_pred hhhhcC--CCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEcCCCCcc
Q psy15782 3 FLMKLS--HETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYILPDSLPL 73 (129)
Q Consensus 3 ~L~~l~--~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~pd~l~l 73 (129)
||..+. ..+|+|+|.||..+.|+|.+||.|+=+ + . ++. ..+|-.-.|.+|.....+.+
T Consensus 12 fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~Vl------L-~-~g~-----~qLIYKhAISTI~P~~~v~~ 71 (79)
T 3sb2_A 12 FLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVL------L-R-NTV-----TQMVYKHAISTVVPARAVNL 71 (79)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEE------E-E-SSS-----EEEEEGGGEEEEEESSCCCC
T ss_pred HHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEE------E-E-CCc-----eEEEEeeeEEEEeecCceec
Confidence 666664 456999999999999999999999833 2 1 222 23455677888776665543
No 34
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=96.63 E-value=0.018 Score=37.47 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=51.6
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEec-ccccceEeeEEEEecCCcc---------eecceEEEecCeEEEEEcCC
Q psy15782 7 LSHETVTIELKNGTQVHGTIQGVD-VAMNTHLKTVKMTVKGKEP---------TTLDSISLRGNNIRYYILPD 69 (129)
Q Consensus 7 l~~~~V~VeLkng~~~~G~L~~~D-~~mNl~Lkdv~~~~~~~~~---------~~l~~~~IrGn~Ir~Ii~pd 69 (129)
++|++|.+--|.+..|.|+|..+| ..-.+.|+||...-+.+++ ..++.+..||+.|+-+.+-+
T Consensus 11 yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~ 83 (88)
T 2vxe_A 11 ELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVN 83 (88)
T ss_dssp CTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECC
T ss_pred ccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEec
Confidence 589999999999999999999999 4567899999988765542 34678888999998776543
No 35
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.32 E-value=0.0054 Score=42.30 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=30.0
Q ss_pred hhcCCCeEEEEEcCCcEEEEEEEEecc-cccceEeeEE
Q psy15782 5 MKLSHETVTIELKNGTQVHGTIQGVDV-AMNTHLKTVK 41 (129)
Q Consensus 5 ~~l~~~~V~VeLkng~~~~G~L~~~D~-~mNl~Lkdv~ 41 (129)
..++|.+|.|+|++++.++|+|..||. .+-+.|.+|.
T Consensus 8 sqFlGy~V~v~LkDgs~~qG~I~~vd~k~LtL~~~~a~ 45 (125)
T 4a53_A 8 ADFYGSNVEVLLNNDSKARGVITNFDSSNSILQLRLAN 45 (125)
T ss_dssp HHHTTCEEEEEETTSCEEEEEEEEEETTTTEEEEEETT
T ss_pred HHhcCceEEEEECCCCEeeEEEEeecCCeeEEeccccc
Confidence 457899999999999999999999983 3334348884
No 36
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.14 E-value=0.013 Score=38.59 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=51.0
Q ss_pred hcCCCeEEEEEcCCcEEEEEEEEec-ccccceEeeEEEEecCCcc---------eecceEEEecCeEEEEEc
Q psy15782 6 KLSHETVTIELKNGTQVHGTIQGVD-VAMNTHLKTVKMTVKGKEP---------TTLDSISLRGNNIRYYIL 67 (129)
Q Consensus 6 ~l~~~~V~VeLkng~~~~G~L~~~D-~~mNl~Lkdv~~~~~~~~~---------~~l~~~~IrGn~Ir~Ii~ 67 (129)
.++|++|.+--|.+..|.|+|..+| ..--+.|+||...-+.+++ ..++.+..||+.|+-+.+
T Consensus 16 ~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V 87 (95)
T 2fb7_A 16 PYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTV 87 (95)
T ss_dssp CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEE
T ss_pred cccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEE
Confidence 5789999999999999999999999 4567889999877665442 457888999999987665
No 37
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=95.81 E-value=0.032 Score=36.04 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=47.6
Q ss_pred hhhhhcCCCeEEEEEcCCcEEEEEEEEecc-cccceEeeEEEEecCCcce-ecceEEEecCeEEEEEc
Q psy15782 2 NFLMKLSHETVTIELKNGTQVHGTIQGVDV-AMNTHLKTVKMTVKGKEPT-TLDSISLRGNNIRYYIL 67 (129)
Q Consensus 2 ~~L~~l~~~~V~VeLkng~~~~G~L~~~D~-~mNl~Lkdv~~~~~~~~~~-~l~~~~IrGn~Ir~Ii~ 67 (129)
++|..+.+++|.+.|...+++.|+...+|. ..|+..++- +.|+ ..++-++|.+.|..+..
T Consensus 22 r~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L------~TPiGv~~eAlLR~~Dii~~sF 83 (85)
T 1y96_B 22 RSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQL------QTPIGVQAEALLRCSDIISYTF 83 (85)
T ss_dssp HHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEE------CCTTCCEEEEEEEGGGEEEEEE
T ss_pred HHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhc------CCCcccchhhhhhcCCEEEEEe
Confidence 567788999999999999999999999994 557655543 2332 36778899999988765
No 38
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=94.28 E-value=0.044 Score=34.19 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=28.1
Q ss_pred ChhhhhcC--CCeEEEEEcCCcEEEEEEEEecccc
Q psy15782 1 MNFLMKLS--HETVTIELKNGTQVHGTIQGVDVAM 33 (129)
Q Consensus 1 ~~~L~~l~--~~~V~VeLkng~~~~G~L~~~D~~m 33 (129)
||.|+.++ ..+|.|+|-+|..+.|+|.-.|.++
T Consensus 11 vR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~c 45 (70)
T 3hfo_A 11 VRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDG 45 (70)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCE
Confidence 45677765 4579999999999999999999987
No 39
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=93.89 E-value=0.24 Score=31.83 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=45.9
Q ss_pred hhcCCCeEEEEEcCCc-EEEEEEEEeccc-ccceEeeEEEEecCCcceecceEEEecCeEEEEEc
Q psy15782 5 MKLSHETVTIELKNGT-QVHGTIQGVDVA-MNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYIL 67 (129)
Q Consensus 5 ~~l~~~~V~VeLkng~-~~~G~L~~~D~~-mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~ 67 (129)
.+.+|..|.|+-++.. +|+|.|..+|.. -|+.|.++. +++-+-+..++.++++.|.-+-+
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG~~~~s~eVtls~~DI~~L~i 66 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNGVKCLVPEVTFRAGDITELKI 66 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETTEECSSSEEEEEGGGCSEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCCCCCCCcEEEEEecChhheEE
Confidence 3678999999999999 999999999965 478899984 34444444567777777664433
No 40
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=93.59 E-value=0.38 Score=29.37 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=38.8
Q ss_pred hhhhcCCCeEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCCcceecceEEEecCeEEEEEc
Q psy15782 3 FLMKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGKEPTTLDSISLRGNNIRYYIL 67 (129)
Q Consensus 3 ~L~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~~~~~l~~~~IrGn~Ir~Ii~ 67 (129)
.|.+-.+++|-|-.-....+.|+|+.||.-. +.|+||+.+. ......++++=+.|-+|.+
T Consensus 10 tL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~----GNk~k~liv~idDinWimL 69 (71)
T 1ycy_A 10 VLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVI----GNRGKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETT----EEEEEEEEEEGGGEEEEEE
T ss_pred HHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHh----ccccceeEEEeccceEEEe
Confidence 3556689999999999999999999999865 5688887652 2333445555455555543
No 41
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=93.37 E-value=0.067 Score=33.52 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=28.3
Q ss_pred ChhhhhcCC--CeEEEEEcCCcEEEEEEEEecccc
Q psy15782 1 MNFLMKLSH--ETVTIELKNGTQVHGTIQGVDVAM 33 (129)
Q Consensus 1 ~~~L~~l~~--~~V~VeLkng~~~~G~L~~~D~~m 33 (129)
||.|++++- .+|.|+|-+|..+.|+|.-.|.++
T Consensus 13 vR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~c 47 (72)
T 3hfn_A 13 IRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTC 47 (72)
T ss_dssp HHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCE
Confidence 467788764 469999999999999999999987
No 42
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=79.76 E-value=2.5 Score=28.05 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=23.2
Q ss_pred EEEEcCCcEEEEEEEEecccccceEeeEEEEec
Q psy15782 13 TIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK 45 (129)
Q Consensus 13 ~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~ 45 (129)
.|.++|.+.| |+|.+|.++.|- .|++.+
T Consensus 36 ~Vy~enk~~I-GKV~DIfGPV~~----pY~sVK 63 (104)
T 2hvy_B 36 RVVDKRLQFV-GIVKDVFGPVKM----PYVAIK 63 (104)
T ss_dssp EEECTTCCEE-EEEEEEEEESSS----CEEEEE
T ss_pred EeEcCCCCEe-EEEEEEECCCCC----cEEEEE
Confidence 7899999999 999999999985 555443
No 43
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=75.09 E-value=4 Score=26.46 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=18.0
Q ss_pred hcCCC-eEEEEEcCCcEEEEEEE
Q psy15782 6 KLSHE-TVTIELKNGTQVHGTIQ 27 (129)
Q Consensus 6 ~l~~~-~V~VeLkng~~~~G~L~ 27 (129)
.|-|+ .|.++|.+|+.+.|||.
T Consensus 24 ~LdGq~~v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 24 LLDGQERVRIELDDGSMIAGTVA 46 (101)
T ss_dssp TSCTTCEEEEEETTSCEEEEEES
T ss_pred hhCCeeEEEEEEcCCCeEeeeec
Confidence 34454 69999999999999974
No 44
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=71.19 E-value=3.5 Score=29.16 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=24.3
Q ss_pred hhhcCCCeEEEEE----cCCcEEEEEEEEeccc
Q psy15782 4 LMKLSHETVTIEL----KNGTQVHGTIQGVDVA 32 (129)
Q Consensus 4 L~~l~~~~V~VeL----kng~~~~G~L~~~D~~ 32 (129)
+...+|+.|.|.| .+.+.+.|+|.++|+.
T Consensus 99 f~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 99 VAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp HHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred HHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 3467899999999 4559999999999974
No 45
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=69.46 E-value=7.4 Score=29.44 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=28.0
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEecccccceEe
Q psy15782 7 LSHETVTIELKNGTQVHGTIQGVDVAMNTHLK 38 (129)
Q Consensus 7 l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lk 38 (129)
.+|++|+|++.++.++.|++.++|..=.+.++
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~ 253 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLD 253 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEE
Confidence 46999999998889999999999988777665
No 46
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=67.21 E-value=23 Score=23.13 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=41.1
Q ss_pred EEEEcCCcEEEEEEEEecccccceEeeEEEEec----CCc-----------ceecceEEEecCeEEEEEcCCC
Q psy15782 13 TIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK----GKE-----------PTTLDSISLRGNNIRYYILPDS 70 (129)
Q Consensus 13 ~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~----~~~-----------~~~l~~~~IrGn~Ir~Ii~pd~ 70 (129)
.|.|++|+.+.+.+..-|+. +.++|.+++.. ++. ...-+.++|+.+.|.++..+..
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~~ 77 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPKD 77 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBCH
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCCH
Confidence 68999999999999987663 77888876652 111 1345688888888888887754
No 47
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=62.92 E-value=6.9 Score=24.65 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=20.1
Q ss_pred EEEEcCCcEEEEEEEEecccccc
Q psy15782 13 TIELKNGTQVHGTIQGVDVAMNT 35 (129)
Q Consensus 13 ~VeLkng~~~~G~L~~~D~~mNl 35 (129)
.|.++|.+.+ |+|.++..+.|-
T Consensus 36 ~Vy~e~~~~I-GkV~dIfGPv~~ 57 (82)
T 2ey4_C 36 RVVDKRLQFV-GIVKDVFGPVKM 57 (82)
T ss_dssp EEECTTCCCC-EEEEEEEEESSS
T ss_pred EeEcCCCCEe-EEEEEEECCCCC
Confidence 7899999999 999999999985
No 48
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=61.72 E-value=13 Score=22.02 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCcEEEEEEEEeccc
Q psy15782 8 SHETVTIELKNGTQVHGTIQGVDVA 32 (129)
Q Consensus 8 ~~~~V~VeLkng~~~~G~L~~~D~~ 32 (129)
.|+.|.+.-.|+..|-|+|.+||..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 5889999999999999999999865
No 49
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=54.51 E-value=34 Score=20.86 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=18.2
Q ss_pred CCCeEEEEEcCCcEEEEEEE
Q psy15782 8 SHETVTIELKNGTQVHGTIQ 27 (129)
Q Consensus 8 ~~~~V~VeLkng~~~~G~L~ 27 (129)
+++.|.+.-+||..|-|+|+
T Consensus 18 ~geDVL~rw~DG~fYLGtIV 37 (69)
T 2xk0_A 18 LQEDVFIKCNDGRFYLGTII 37 (69)
T ss_dssp TTCEEEEECTTSCEEEEEEE
T ss_pred cCCeEEEEecCCCEEEEEEE
Confidence 57889999999999999993
No 50
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=52.83 E-value=23 Score=24.00 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=23.1
Q ss_pred EcCCcEEEEEE---EEecccccceEeeEEEEec
Q psy15782 16 LKNGTQVHGTI---QGVDVAMNTHLKTVKMTVK 45 (129)
Q Consensus 16 Lkng~~~~G~L---~~~D~~mNl~Lkdv~~~~~ 45 (129)
+++...+.|.| .-||+...+.|+|+++...
T Consensus 55 vksk~sfKG~L~tYrfcDnVWtfilkd~~fk~~ 87 (121)
T 1nh2_D 55 TQSKLTVKGNLDTYGFCDDVWTFIVKNCQVTVE 87 (121)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred hccCCeEEeeeccccccCcEEEEEEeceEEEec
Confidence 34556667777 5689999999999998754
No 51
>3v4h_A Hypothetical protein; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 2.10A {Yersinia pestis}
Probab=51.13 E-value=25 Score=25.16 Aligned_cols=59 Identities=8% Similarity=0.055 Sum_probs=38.9
Q ss_pred CCCeE-EEEEcCCcEEEEEEEEecccccceEeeEEEEec------CCcceecceEEEecCeEEEEEcCCC
Q psy15782 8 SHETV-TIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVK------GKEPTTLDSISLRGNNIRYYILPDS 70 (129)
Q Consensus 8 ~~~~V-~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~------~~~~~~l~~~~IrGn~Ir~Ii~pd~ 70 (129)
.|+.+ .|+|+--+. .|. -..|+.+.|+||.++.- +.+..+.|++.++-..|.+-+.+..
T Consensus 99 ~Ge~l~~v~i~~~R~-gG~---~~~Y~~i~L~~v~Issis~~~~~~~~~~p~E~vsl~Y~kI~w~y~~q~ 164 (185)
T 3v4h_A 99 LGKHIKNVQFVLRKA-GGD---PLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKMTQDYVMQN 164 (185)
T ss_dssp HTCCEEEEEEEEEC--------CCEEEEEEEEEEEEEEEEEEEESCC--CCEEEEEEECSEEEEEEEECC
T ss_pred CCCccCcEEEEEEEC-CCC---eEEEEEEEEEeEEEEEEEecccCCCCCceEEEEEEEeCEEEEEEEEEC
Confidence 57766 566665444 453 46789999999988752 2345678889999888888777654
No 52
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=51.09 E-value=6.4 Score=25.03 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=19.2
Q ss_pred hcCCCeEEEEEcCCcEEEEEEEEe
Q psy15782 6 KLSHETVTIELKNGTQVHGTIQGV 29 (129)
Q Consensus 6 ~l~~~~V~VeLkng~~~~G~L~~~ 29 (129)
.+.+.+|.|+|+||+++.|+...+
T Consensus 22 c~~~~~l~l~l~dGe~~~g~a~D~ 45 (86)
T 1sg5_A 22 CQHHLMLTLELKDGEKLQAKASDL 45 (86)
T ss_dssp HTTTTCEEEECTTTCCEEESSCEE
T ss_pred HHcCCeEEEEEeCCCEEEEEEEee
Confidence 456789999999999998865543
No 53
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=51.01 E-value=24 Score=21.41 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCcEEEEEEEEeccc
Q psy15782 8 SHETVTIELKNGTQVHGTIQGVDVA 32 (129)
Q Consensus 8 ~~~~V~VeLkng~~~~G~L~~~D~~ 32 (129)
+|+.|...-.||..|.|+|.+|+..
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 5788999999999999999999975
No 54
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=48.04 E-value=32 Score=22.71 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=22.4
Q ss_pred EcCCcEEEEEE---EEecccccceEeeEEEEe
Q psy15782 16 LKNGTQVHGTI---QGVDVAMNTHLKTVKMTV 44 (129)
Q Consensus 16 Lkng~~~~G~L---~~~D~~mNl~Lkdv~~~~ 44 (129)
+++...+.|.| .-||+.....|+|+++..
T Consensus 51 vksk~sfKG~L~tYrfcDnVWTf~lkd~~fk~ 82 (108)
T 1nvp_D 51 VRNRVNFRGSLNTYRFCDNVWTFVLNDVEFRE 82 (108)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred hccCCeEeeccCCccccCcEEEEEEeceEEEe
Confidence 34556667766 578999999999999874
No 55
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.10 E-value=30 Score=21.03 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCcEEEEEEEEeccc
Q psy15782 8 SHETVTIELKNGTQVHGTIQGVDVA 32 (129)
Q Consensus 8 ~~~~V~VeLkng~~~~G~L~~~D~~ 32 (129)
.|+.|...-.|+..|-|+|..||..
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETT
T ss_pred cCCEEEEEecCCcEEEeEEEEEecC
Confidence 5889999999999999999999965
No 56
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=45.26 E-value=35 Score=25.03 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=26.1
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEecccccce
Q psy15782 7 LSHETVTIELKNGTQVHGTIQGVDVAMNTH 36 (129)
Q Consensus 7 l~~~~V~VeLkng~~~~G~L~~~D~~mNl~ 36 (129)
..|++|+|+..++..+.|++..+|..=.+.
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~ 219 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL 219 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE
Confidence 479999999988887889999999877764
No 57
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=44.42 E-value=37 Score=20.95 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=25.9
Q ss_pred hhcCCCeEEEEEcCCcEEEEEEEEecccccceEee
Q psy15782 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKT 39 (129)
Q Consensus 5 ~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkd 39 (129)
.+..++.|.|...+-..++|.+..++..+=+.+.+
T Consensus 45 d~~~~e~v~i~vng~~~~~ge~g~~~~~~avrI~~ 79 (84)
T 1o9y_A 45 TGISPGHATLCHGEQVVAEGELVDVEGRLGLQITR 79 (84)
T ss_dssp CSSCTTEEEEEETTEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEE
Confidence 34456788888888888888888888876655544
No 58
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=42.57 E-value=12 Score=23.43 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCcEEEEEEEEecccc
Q psy15782 8 SHETVTIELKNGTQVHGTIQGVDVAM 33 (129)
Q Consensus 8 ~~~~V~VeLkng~~~~G~L~~~D~~m 33 (129)
.|+.|.+.-+||..|-|+|..||..-
T Consensus 29 eGeDVLarwsDGlfYLGTI~kV~~~~ 54 (79)
T 2m0o_A 29 EGQDVLARWTDGLLYLGTIKKVDSAR 54 (79)
T ss_dssp TTCEEEBCCTTSCCCEEEEEEEETTT
T ss_pred cCCEEEEEecCCCEEeEEEEEeccCC
Confidence 58889999999999999999999763
No 59
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=40.94 E-value=27 Score=25.87 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=25.7
Q ss_pred hhcCCCeEEEEEcCCcEEEEEEEEecccc
Q psy15782 5 MKLSHETVTIELKNGTQVHGTIQGVDVAM 33 (129)
Q Consensus 5 ~~l~~~~V~VeLkng~~~~G~L~~~D~~m 33 (129)
..|+|+.+..++.++..+.|.|++++.|+
T Consensus 21 ~~LLG~~Lv~~~~~g~~~~grIVEtEAY~ 49 (219)
T 3uby_A 21 RAFLGQVLVRRLPNGTELRGRIVETEAYL 49 (219)
T ss_dssp HHTTTCEEEEECTTSCEEEEEEEEEEEEC
T ss_pred HHhCCCEEEEEcCCCCEEEEEEEEEeecc
Confidence 46899999999999988999999998877
No 60
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=40.50 E-value=19 Score=26.38 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=24.9
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEecccccceEe
Q psy15782 7 LSHETVTIELKNGTQVHGTIQGVDVAMNTHLK 38 (129)
Q Consensus 7 l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lk 38 (129)
..|++|+|...++ +.|++..+|..=.+.++
T Consensus 186 ~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~ 215 (233)
T 2eay_A 186 YLGEEVKLLGEGK--ITGKLVGLSEKGGALIL 215 (233)
T ss_dssp TTTSEEEETTEEE--EEEEEEEECTTSCEEEE
T ss_pred ccCCEEEEEECCe--EEEEEEEECCCCeEEEE
Confidence 4799999987766 88999999988777665
No 61
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.67 E-value=32 Score=20.57 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCcEEEEEEEEeccc
Q psy15782 8 SHETVTIELKNGTQVHGTIQGVDVA 32 (129)
Q Consensus 8 ~~~~V~VeLkng~~~~G~L~~~D~~ 32 (129)
.|+.|...-+|+..|-|+|..||..
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 5788999999999999999999975
No 62
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=36.15 E-value=52 Score=20.91 Aligned_cols=35 Identities=9% Similarity=0.119 Sum_probs=26.5
Q ss_pred hhcCCCeEEEEEcCCcEEEEEEEEecccccceEee
Q psy15782 5 MKLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKT 39 (129)
Q Consensus 5 ~~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkd 39 (129)
.+..++.|.|...+-..++|.+..++..+=+.+.+
T Consensus 49 d~~~~~~v~i~vng~~i~~Ge~g~~~~~~aVrI~~ 83 (96)
T 3uep_A 49 TTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIER 83 (96)
T ss_dssp EEESSCEEEEEETTEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCcEEEEECCEEEEEEEEEEECCEEEEEEEE
Confidence 34457788888888888888888888877665554
No 63
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.98 E-value=33 Score=22.25 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=22.7
Q ss_pred EEEEcCCcEEEEEEEEecccccceEeeEEEEecC
Q psy15782 13 TIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKG 46 (129)
Q Consensus 13 ~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~ 46 (129)
.|.|+|.+.+ |+|.++.+..|- .+++.+.
T Consensus 55 ~l~~edk~~I-GkV~EiFGpV~~----PyysVk~ 83 (103)
T 2eqn_A 55 VIFKSDRQAA-GKIFEIFGPVAH----PFYVLRF 83 (103)
T ss_dssp EEECTTSBEE-EEEEEEESCSSS----CEEEECC
T ss_pred EEEecCCcEE-EEEEEEECCCCC----CEEEEEe
Confidence 6788888887 999999999985 5555443
No 64
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=34.27 E-value=49 Score=22.16 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCcEEEEEEEEec
Q psy15782 8 SHETVTIELKNGTQVHGTIQGVD 30 (129)
Q Consensus 8 ~~~~V~VeLkng~~~~G~L~~~D 30 (129)
+|++|..+-+|+..|+|++.++.
T Consensus 8 vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 8 AGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEE
T ss_pred cCCEEEEECCCCCEEeEEEEEEe
Confidence 69999999999999999998865
No 65
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=33.00 E-value=1e+02 Score=20.06 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=40.4
Q ss_pred hcCCCeEEEEEcCCc-EEEEEEEEecccccceEeeEEEEecCCc--ceecceEEEecCeEEEE
Q psy15782 6 KLSHETVTIELKNGT-QVHGTIQGVDVAMNTHLKTVKMTVKGKE--PTTLDSISLRGNNIRYY 65 (129)
Q Consensus 6 ~l~~~~V~VeLkng~-~~~G~L~~~D~~mNl~Lkdv~~~~~~~~--~~~l~~~~IrGn~Ir~I 65 (129)
+.+|..|.|.-.+.. +|+|.+..+|. -++.|.++.. ++- +-...++.++...|..+
T Consensus 9 dwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr---NGiplk~~~~EVtLsa~DI~~L 67 (103)
T 2rm4_A 9 DWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR---NGVPLRKQNAEVVLKCTDIRSI 67 (103)
T ss_dssp GGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE---TTEECSCSSSCEEEETTTEEEE
T ss_pred ceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh---cCcCcCCCCceEEEEecchhhe
Confidence 568999999999987 99999999994 3477776653 333 23445677777777644
No 66
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=32.79 E-value=68 Score=24.39 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=25.5
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEecccccceEe
Q psy15782 7 LSHETVTIELKNGTQVHGTIQGVDVAMNTHLK 38 (129)
Q Consensus 7 l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lk 38 (129)
..|++|+|+..++ ++.|++.++|..=.+.++
T Consensus 271 ~~g~~V~v~~~~~-~~~G~~~gid~~G~L~v~ 301 (321)
T 1bia_A 271 FINRPVKLIIGDK-EIFGISRGIDKQGALLLE 301 (321)
T ss_dssp TTTSEEEEEETTE-EEEEEEEEECTTSCEEEE
T ss_pred hcCCEEEEEECCc-EEEEEEEEECCCCeEEEE
Confidence 4799999997655 788999999988777665
No 67
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=31.02 E-value=62 Score=20.38 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=24.4
Q ss_pred hcCCCeEEEEEcCCcEEEEEEEEecccccceEeeE
Q psy15782 6 KLSHETVTIELKNGTQVHGTIQGVDVAMNTHLKTV 40 (129)
Q Consensus 6 ~l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv 40 (129)
+..++.|.|...+-..++|.+..++..+=+.+.++
T Consensus 50 ~~~~~~v~v~v~g~~i~~G~~g~~~~~~aVrI~~~ 84 (96)
T 1o6a_A 50 KLTGEPVDILVNGKLIARGEVVVIDENFGVRITEI 84 (96)
T ss_dssp EETTCCEEEEETTEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCcEEEEECCEEEEEEEEEEECCEEEEEEEEe
Confidence 34567777877777888888888887665555443
No 68
>3dgp_B RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae} SCOP: d.295.1.0 PDB: 3dom_B
Probab=29.93 E-value=19 Score=22.10 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=11.2
Q ss_pred EEEEEEEEecccc
Q psy15782 21 QVHGTIQGVDVAM 33 (129)
Q Consensus 21 ~~~G~L~~~D~~m 33 (129)
.++|.|..||..|
T Consensus 3 A~kGvLi~CDpa~ 15 (71)
T 3dgp_B 3 ARKGALVQCDPSI 15 (71)
T ss_dssp EEEEEEEECCHHH
T ss_pred ceeEEEEEcCHHH
Confidence 4689999999877
No 69
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=29.53 E-value=24 Score=28.73 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=28.3
Q ss_pred hhhhhcC---CCeEEEEEcCC---cEEEEEEEE-e----cccccceEeeEE
Q psy15782 2 NFLMKLS---HETVTIELKNG---TQVHGTIQG-V----DVAMNTHLKTVK 41 (129)
Q Consensus 2 ~~L~~l~---~~~V~VeLkng---~~~~G~L~~-~----D~~mNl~Lkdv~ 41 (129)
+||..+- +..|.|+.+++ .+|+|+|+- . |+++=++|+|=|
T Consensus 5 ~~~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kl~~gy 55 (438)
T 1zq1_A 5 EFLKERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLENGY 55 (438)
T ss_dssp HHHHHTTCCTTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEETTSC
T ss_pred HHHHhcCCCCCCEEEEEECCCcceeEEEEEEecCcccCCCCeEEEEccCCc
Confidence 3566553 88999999998 799999993 3 355556666544
No 70
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=28.33 E-value=44 Score=24.49 Aligned_cols=29 Identities=14% Similarity=0.059 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCcEEEEEEEEecccccceEe
Q psy15782 8 SHETVTIELKNGTQVHGTIQGVDVAMNTHLK 38 (129)
Q Consensus 8 ~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lk 38 (129)
.|++|+|+..++ +.|++..+|..=.+.++
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~ 216 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIR 216 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEE
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEE
Confidence 799999998877 88999999998877665
No 71
>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae}
Probab=25.86 E-value=58 Score=22.07 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=21.6
Q ss_pred EEEEcCCcEEEEEEEEecccccceEeeE
Q psy15782 13 TIELKNGTQVHGTIQGVDVAMNTHLKTV 40 (129)
Q Consensus 13 ~VeLkng~~~~G~L~~~D~~mNl~Lkdv 40 (129)
.|.|.|.+.+ |+|.++.+..|--+-.|
T Consensus 62 ~l~ledr~~I-GkV~EiFGpV~~P~ysV 88 (131)
T 2v3m_A 62 IFCLEDRTLI-GMLTEVFGPLQNPFYRI 88 (131)
T ss_dssp EEEETTCCEE-EECCEEESCSSSCEEEE
T ss_pred EEEecCCcEE-EEEEEEeCCCCCcEEEE
Confidence 6789998888 99999999998643333
No 72
>3isu_A RAS GTPase-activating-like protein iqgap3; structural genomics, structural genomics consortium (SGC), RGC domain, calmodulin-binding; 1.88A {Homo sapiens}
Probab=25.69 E-value=9 Score=25.98 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=28.0
Q ss_pred EEEEEecccccceEeeEEEEec-CCcceecceEEEecCeEEEEEcCCCCccccccC
Q psy15782 24 GTIQGVDVAMNTHLKTVKMTVK-GKEPTTLDSISLRGNNIRYYILPDSLPLETLLI 78 (129)
Q Consensus 24 G~L~~~D~~mNl~Lkdv~~~~~-~~~~~~l~~~~IrGn~Ir~Ii~pd~l~l~~~L~ 78 (129)
|.|.++|+......++++++.. ..+ .+.+.|....+-.-.....|.||++|.
T Consensus 36 GVLvei~g~~~~~~~~v~f~Isss~e---~GvF~I~~~~~gi~~~~~~L~ldDLLq 88 (121)
T 3isu_A 36 GVLVEIEDLPASHFRNVIFDITPGDE---AGKFEVNAKFLGVDMERFQLHYQDLLQ 88 (121)
T ss_dssp TSEEEETTCCGGGGGGEEEEEEECSS---TTEEEEEEEETTEECCCEEEEHHHHHH
T ss_pred CEEEEecCCChhccccEEEEEEeCCC---CeEEEEEEEeCCceeeEEEeeHHHHHH
Confidence 6788998776666677877553 222 234555432211111222267788883
No 73
>3qw9_A Transforming growth factor beta receptor type 3; cytokine receptor, immunoglobulin domain, ZONA pellucida, TG ligand CO-receptor; HET: NAG BMA FUC MAN; 2.00A {Rattus norvegicus}
Probab=25.60 E-value=1.1e+02 Score=21.45 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=27.5
Q ss_pred eEEEEEcCCcEEEEEEEEecccccceEeeEEEEecCC
Q psy15782 11 TVTIELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKGK 47 (129)
Q Consensus 11 ~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~~ 47 (129)
.+.|+|.+--.+.=.|..-|..+.+.|+++.-+....
T Consensus 24 ~~~v~l~~~lyvev~l~~~d~~l~l~ld~CwATps~d 60 (176)
T 3qw9_A 24 VFSVAENEHVYVEVSVTKADQDLGFAIQTCFLSPYSN 60 (176)
T ss_dssp SEEECTTCEEEEEEEEEESCTTEEEEEEEEEEESCSC
T ss_pred CceEecCCEEEEEEEeccCCCceEEEEeeEEeecCCC
Confidence 3566666655555567888999999999999986543
No 74
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=24.82 E-value=42 Score=27.31 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=26.6
Q ss_pred hhhhhcC---CCeEEEEEcCCcEEEEEEEE-ec----ccccceEeeEE
Q psy15782 2 NFLMKLS---HETVTIELKNGTQVHGTIQG-VD----VAMNTHLKTVK 41 (129)
Q Consensus 2 ~~L~~l~---~~~V~VeLkng~~~~G~L~~-~D----~~mNl~Lkdv~ 41 (129)
+||..+- +..|.|+.++ .+|+|+|+- .+ +++=++|+|=|
T Consensus 9 ~~~~~~~~~~gd~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~kl~~gy 55 (435)
T 2d6f_A 9 KFLESASIDVGDMVLVEKPD-VTYEGMVLDRADDADDRHIVLKLENGY 55 (435)
T ss_dssp HHHHTTTCCTTCEEEEECSS-CEEEEEECCCCTTSCSSEEEEECTTSC
T ss_pred HHHHHcCCCCCCEEEEEECC-eEEEEEEecCcccCCCCeEEEEccCce
Confidence 3555543 7889999877 999999993 33 45556665544
No 75
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix, dynamic fluctuations, conformational exchange, chaps, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=24.25 E-value=86 Score=19.87 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=24.6
Q ss_pred EEcCCcEEEEEEEEecccccceEeeEEEEecC
Q psy15782 15 ELKNGTQVHGTIQGVDVAMNTHLKTVKMTVKG 46 (129)
Q Consensus 15 eLkng~~~~G~L~~~D~~mNl~Lkdv~~~~~~ 46 (129)
=|+-|.+|.|+|.+|-.+-+-...-..++.+.
T Consensus 44 GLkPGvtYegQLisV~r~g~~EvtrfdfTT~~ 75 (89)
T 1q38_A 44 GLKPGVVYEGQLISIQQYGHQEVTRFDFTTTS 75 (89)
T ss_dssp CCCTTCCEEEEEEEECTTSCCCEEEEEECSSS
T ss_pred ccCCCcEEEEEEEeeeecccCCceEEEEEecc
Confidence 36779999999999999998766655555443
No 76
>3he1_A Major exported HCP3 protein; structural genomics, APC22128, HCPC, secretion, virule 2, protein structure initiative; 2.10A {Pseudomonas aeruginosa}
Probab=24.24 E-value=79 Score=22.76 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=40.9
Q ss_pred CCCeE-EEEEcCCcEE-EEEEEEecccccceEeeEEEEecC-----------CcceecceEEEecCeEEEEEcCCCCcc
Q psy15782 8 SHETV-TIELKNGTQV-HGTIQGVDVAMNTHLKTVKMTVKG-----------KEPTTLDSISLRGNNIRYYILPDSLPL 73 (129)
Q Consensus 8 ~~~~V-~VeLkng~~~-~G~L~~~D~~mNl~Lkdv~~~~~~-----------~~~~~l~~~~IrGn~Ir~Ii~pd~l~l 73 (129)
.|+.+ .|+|+--+.- .|. -..|+++.|+||.++.-. .+..++|++.++-..|.+-+.+....-
T Consensus 109 ~Ge~l~~v~l~~yR~~~~G~---~~~Y~~i~L~~v~Issi~~~~~~~~~~~~~~~~p~E~Vsl~Y~kI~w~y~~~~~~~ 184 (195)
T 3he1_A 109 SGERLTKVEIQWYRTSAAGT---QEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGTSG 184 (195)
T ss_dssp HTCEEEEEEEEEEEECTTSS---EEEEEEEEEEEEEEEEEEEEEC---------CCEEEEEEEECSEEEEEETTTCCEE
T ss_pred CCCccceEEEEEEEeCCCCc---eEEEEEEEEeeeEEEEEEecccccccCCCCCCcceEEEEEEeCEEEEEEEcCCCEE
Confidence 47766 5655422110 121 236889999999877421 233578999999999999998877543
No 77
>1y12_A Hypothetical protein PA0085; hemolysin-corregulation, structural PSI, protein structure initiative, midwest center for struc genomics; 1.95A {Pseudomonas aeruginosa PAO1} SCOP: b.157.1.1
Probab=23.00 E-value=1.2e+02 Score=20.91 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=30.5
Q ss_pred cccccceEeeEEEEecC-----CcceecceEEEecCeEEEEEcCCC
Q psy15782 30 DVAMNTHLKTVKMTVKG-----KEPTTLDSISLRGNNIRYYILPDS 70 (129)
Q Consensus 30 D~~mNl~Lkdv~~~~~~-----~~~~~l~~~~IrGn~Ir~Ii~pd~ 70 (129)
..|+.+.|+||.++.-. ....+.+++.+.-..|.+-+.+..
T Consensus 98 ~~y~~i~L~~a~Is~i~~~~~~~~~~~~E~vsl~y~~I~~~y~~~~ 143 (165)
T 1y12_A 98 VEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQK 143 (165)
T ss_dssp CCCEEEEEEEEEEEEEECCCCSSCSSCEEEEEEEEEEEEEEECCBC
T ss_pred eEEEEEEEEeEEEEEEEecccCCCCCcEEEEEEEeeEEEEEEEeeC
Confidence 57999999999988531 344577888888888887776543
No 78
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=23.00 E-value=1.1e+02 Score=23.49 Aligned_cols=31 Identities=13% Similarity=0.151 Sum_probs=24.8
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEecccccceEe
Q psy15782 7 LSHETVTIELKNGTQVHGTIQGVDVAMNTHLK 38 (129)
Q Consensus 7 l~~~~V~VeLkng~~~~G~L~~~D~~mNl~Lk 38 (129)
..|++|+|...+ ..+.|++.++|..=.+.++
T Consensus 277 ~~g~~V~v~~~~-~~~~G~~~gId~~G~Llv~ 307 (323)
T 3rkx_A 277 IWNRTLLFTEND-KQFKGQAIDLDYDGYLIVR 307 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEE
T ss_pred hcCCEEEEEECC-eEEEEEEEEECCCCEEEEE
Confidence 478999998654 5788999999998877665
No 79
>3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} SCOP: b.157.1.0
Probab=21.78 E-value=68 Score=22.13 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=28.8
Q ss_pred ecccccceEeeEEEEec------CCcceecceEEEecCeEEEEEcCC
Q psy15782 29 VDVAMNTHLKTVKMTVK------GKEPTTLDSISLRGNNIRYYILPD 69 (129)
Q Consensus 29 ~D~~mNl~Lkdv~~~~~------~~~~~~l~~~~IrGn~Ir~Ii~pd 69 (129)
-..|+.+.|+||.+++- .....+.|++.++-..|.+-+.|.
T Consensus 94 ~~~y~~i~L~~v~Is~i~~~~~~~~~~~p~E~vsl~y~kI~w~y~~q 140 (163)
T 3eaa_A 94 KFAFCIYKFTHVAVSSYQCSGATGGSDRPQETIDFAYKEVTWEYVPQ 140 (163)
T ss_dssp CCEEEEEEEEEEEEEEEEEECCCSSSSSCEEEEEEECSEEECCBCCB
T ss_pred eeEEEEEEEEeEEEEEEEeccccCCCCceEEEEEEEeeEeEEEEEEE
Confidence 35788999999987742 234467788888877777655544
No 80
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Probab=21.56 E-value=1.1e+02 Score=23.22 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=22.0
Q ss_pred EecccccceEeeEEEEecCCc-ceecceEEEecCeEEEEE
Q psy15782 28 GVDVAMNTHLKTVKMTVKGKE-PTTLDSISLRGNNIRYYI 66 (129)
Q Consensus 28 ~~D~~mNl~Lkdv~~~~~~~~-~~~l~~~~IrGn~Ir~Ii 66 (129)
+++..|.+.++++.++..+.. ...-..+.|.+..|..|-
T Consensus 2 ~~~~~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg 41 (418)
T 2qs8_A 2 SLDVDSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIK 41 (418)
T ss_dssp -----CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEE
T ss_pred CCCCCccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEe
Confidence 567777778888777654432 223346777877777774
No 81
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=21.50 E-value=1.2e+02 Score=24.09 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=26.5
Q ss_pred CeEEEEEcCCcEEEEEEEEecccccceEeeE
Q psy15782 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTV 40 (129)
Q Consensus 10 ~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv 40 (129)
.+|.|.+.+++.|..++..+|...++.|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4689999999999999999999888755544
No 82
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=21.23 E-value=70 Score=23.31 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=17.2
Q ss_pred cCCCeEEEEEcCCcEEEEEEEE
Q psy15782 7 LSHETVTIELKNGTQVHGTIQG 28 (129)
Q Consensus 7 l~~~~V~VeLkng~~~~G~L~~ 28 (129)
..|+.|.|.+.++++++|++.+
T Consensus 169 ~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 169 AVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp CTTSEEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEEEEec
Confidence 3678888888888888888764
No 83
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=20.98 E-value=1.5e+02 Score=23.71 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=26.1
Q ss_pred CeEEEEEcCCcEEEEEEEEecccccceEeeE
Q psy15782 10 ETVTIELKNGTQVHGTIQGVDVAMNTHLKTV 40 (129)
Q Consensus 10 ~~V~VeLkng~~~~G~L~~~D~~mNl~Lkdv 40 (129)
..|.|.|.++++|..++..+|...++.+-.+
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 3689999999999999999999988855443
Done!