BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15783
(86 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VMW9|GMDS_DROME GDP-mannose 4,6 dehydratase OS=Drosophila melanogaster GN=Gmd PE=1
SV=2
Length = 395
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 60/72 (83%)
Query: 12 AMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRV 71
AMWMMLQ+++P D+VIATGETHSVREFVEAAF +I + I W+G G DEVG E TGIVRV
Sbjct: 281 AMWMMLQRESPSDYVIATGETHSVREFVEAAFKHIDREITWKGKGVDEVGVENGTGIVRV 340
Query: 72 KVNENYFRPTEV 83
++N YFRPTEV
Sbjct: 341 RINPKYFRPTEV 352
>sp|O60547|GMDS_HUMAN GDP-mannose 4,6 dehydratase OS=Homo sapiens GN=GMDS PE=1 SV=1
Length = 372
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 60/72 (83%)
Query: 12 AMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRV 71
AMW+MLQ D P+DFVIATGE HSVREFVE +FL+IGKTIVWEG ++EVG+ K+TG V V
Sbjct: 258 AMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHV 317
Query: 72 KVNENYFRPTEV 83
V+ Y+RPTEV
Sbjct: 318 TVDLKYYRPTEV 329
>sp|Q8K0C9|GMDS_MOUSE GDP-mannose 4,6 dehydratase OS=Mus musculus GN=Gmds PE=2 SV=1
Length = 372
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 12 AMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRV 71
AMW+MLQ D P+DFVIATGE HSVREFVE +F++IGKTIVWEG ++EVG+ K+TG V V
Sbjct: 258 AMWLMLQNDEPEDFVIATGEVHSVREFVEKSFMHIGKTIVWEGKNENEVGRCKETGKVHV 317
Query: 72 KVNENYFRPTEV 83
V+ Y+RPTEV
Sbjct: 318 TVDLKYYRPTEV 329
>sp|Q8K3X3|GMDS_CRIGR GDP-mannose 4,6 dehydratase OS=Cricetulus griseus GN=GMDS PE=2 SV=1
Length = 372
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%)
Query: 12 AMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRV 71
AMW+MLQ D P+DFVIATGE HSVREFVE +F++IGKTIVWEG ++EVG+ K+TG + V
Sbjct: 258 AMWLMLQNDEPEDFVIATGEVHSVREFVEKSFMHIGKTIVWEGKNENEVGRCKETGKIHV 317
Query: 72 KVNENYFRPTEV 83
V+ Y+RPTEV
Sbjct: 318 TVDLKYYRPTEV 329
>sp|O45583|GMD2_CAEEL GDP-mannose 4,6 dehydratase 2 OS=Caenorhabditis elegans GN=gmd-2
PE=1 SV=1
Length = 382
Score = 100 bits (249), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/72 (66%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 12 AMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRV 71
AMW +LQQDTP DFVIATG+ SVREF AF IG+ +VWEG G DEVGK +D G+VRV
Sbjct: 269 AMWRILQQDTPDDFVIATGKQFSVREFCNLAFAEIGEQLVWEGEGVDEVGKNQD-GVVRV 327
Query: 72 KVNENYFRPTEV 83
KV+ Y+RPTEV
Sbjct: 328 KVSPKYYRPTEV 339
>sp|Q18801|GMD1_CAEEL GDP-mannose 4,6 dehydratase 1 OS=Caenorhabditis elegans GN=bre-1
PE=1 SV=3
Length = 399
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 12 AMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRV 71
AMW +LQ D+P DFVIATG+ SVREF AF IG+ + WEG G +EVGK KD G++RV
Sbjct: 286 AMWRILQHDSPDDFVIATGKQFSVREFCNLAFAEIGEVLQWEGEGVEEVGKNKD-GVIRV 344
Query: 72 KVNENYFRPTEV 83
KV+ Y+RPTEV
Sbjct: 345 KVSPKYYRPTEV 356
>sp|Q1ZXF7|GMDS_DICDI GDP-mannose 4,6 dehydratase OS=Dictyostelium discoideum GN=gmd PE=1
SV=1
Length = 356
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 53/72 (73%)
Query: 12 AMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRV 71
AMW+MLQQ+ P+DFVIATGETHSVREFVE +F I I W G + E G + TG V V
Sbjct: 241 AMWLMLQQEKPEDFVIATGETHSVREFVEKSFKEIDIIIKWRGEAEKEEGYCEKTGKVYV 300
Query: 72 KVNENYFRPTEV 83
K++E Y+RPTEV
Sbjct: 301 KIDEKYYRPTEV 312
>sp|O85713|NOEL_RHIFH GDP-mannose 4,6-dehydratase OS=Rhizobium fredii (strain HH103)
GN=noeL PE=3 SV=1
Length = 351
Score = 79.7 bits (195), Expect = 4e-15, Method: Composition-based stats.
Identities = 41/72 (56%), Positives = 46/72 (63%)
Query: 12 AMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRV 71
MWMM QQD P D+V+ATG T SVR FVE AF G TI W G G +E G + TG V
Sbjct: 238 GMWMMCQQDRPGDYVLATGVTTSVRTFVEWAFEETGMTIEWVGEGIEERGIDAATGKCVV 297
Query: 72 KVNENYFRPTEV 83
V+ YFRPTEV
Sbjct: 298 AVDPRYFRPTEV 309
>sp|P55354|NOEL_RHISN GDP-mannose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234)
GN=noeL PE=3 SV=1
Length = 351
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/72 (56%), Positives = 46/72 (63%)
Query: 12 AMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRV 71
MWMM QQD P D+V+ATG T SVR FVE AF G TI W G G +E G + TG V
Sbjct: 238 GMWMMCQQDRPGDYVLATGVTTSVRTFVEWAFEETGMTIEWVGEGIEERGIDAATGRCVV 297
Query: 72 KVNENYFRPTEV 83
V+ YFRPTEV
Sbjct: 298 AVDPRYFRPTEV 309
>sp|A8Y0L5|GMD1_CAEBR GDP-mannose 4,6 dehydratase 1 OS=Caenorhabditis briggsae GN=bre-1
PE=3 SV=2
Length = 377
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/72 (63%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 12 AMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRV 71
AMW +LQ D P DFVIATG+ SVREF AF IG+ + WEG G +EVGK KD GIVRV
Sbjct: 264 AMWRILQHDAPDDFVIATGKQFSVREFCNLAFAEIGEVLEWEGEGVEEVGKNKD-GIVRV 322
Query: 72 KVNENYFRPTEV 83
KV+ Y+RPTEV
Sbjct: 323 KVSPKYYRPTEV 334
>sp|Q56598|GM4D2_VIBCL Probable GDP-mannose 4,6-dehydratase OS=Vibrio cholerae GN=rfbD
PE=3 SV=2
Length = 372
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 10/80 (12%)
Query: 14 WMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVG----------KE 63
WMMLQQD P+DFVIATG +SVR+F+E + +G T+ +EG G DE G
Sbjct: 238 WMMLQQDQPEDFVIATGVQYSVRQFIEWSAKELGVTLTFEGQGVDEKGIVTAIEGDKAPA 297
Query: 64 KDTGIVRVKVNENYFRPTEV 83
G V V+++ YFRP EV
Sbjct: 298 LKVGDVVVQIDPRYFRPAEV 317
>sp|P0AC91|GM4D_SHIFL GDP-mannose 4,6-dehydratase OS=Shigella flexneri GN=gmd PE=3 SV=1
Length = 373
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 14 WMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVG----------KE 63
WMMLQQ+ P+DFVIATG +SVR+FVE A +G + +EGTG +E G
Sbjct: 238 WMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPG 297
Query: 64 KDTGIVRVKVNENYFRPTEV 83
G V + V+ YFRP EV
Sbjct: 298 VKPGDVIIAVDPRYFRPAEV 317
>sp|P0AC88|GM4D_ECOLI GDP-mannose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=gmd
PE=1 SV=1
Length = 373
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 14 WMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVG----------KE 63
WMMLQQ+ P+DFVIATG +SVR+FVE A +G + +EGTG +E G
Sbjct: 238 WMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPG 297
Query: 64 KDTGIVRVKVNENYFRPTEV 83
G V + V+ YFRP EV
Sbjct: 298 VKPGDVIIAVDPRYFRPAEV 317
>sp|P0AC89|GM4D_ECOL6 GDP-mannose 4,6-dehydratase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=gmd PE=3 SV=1
Length = 373
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 14 WMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVG----------KE 63
WMMLQQ+ P+DFVIATG +SVR+FVE A +G + +EGTG +E G
Sbjct: 238 WMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPG 297
Query: 64 KDTGIVRVKVNENYFRPTEV 83
G V + V+ YFRP EV
Sbjct: 298 VKPGDVIIAVDPRYFRPAEV 317
>sp|P0AC90|GM4D_ECO57 GDP-mannose 4,6-dehydratase OS=Escherichia coli O157:H7 GN=gmd PE=3
SV=1
Length = 373
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 14 WMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVG----------KE 63
WMMLQQ+ P+DFVIATG +SVR+FVE A +G + +EGTG +E G
Sbjct: 238 WMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPG 297
Query: 64 KDTGIVRVKVNENYFRPTEV 83
G V + V+ YFRP EV
Sbjct: 298 VKPGDVIIAVDPRYFRPAEV 317
>sp|Q56872|GM4D_YERE8 Probable GDP-mannose 4,6-dehydratase OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=gmd PE=3 SV=2
Length = 372
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 14 WMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEV----------GKE 63
WMMLQQD P+DFVIATG+ +VREFV + G I + G G DE+
Sbjct: 237 WMMLQQDQPEDFVIATGKQITVREFVRMSAKEAGIEIEFSGKGIDEIATISAISDEYATS 296
Query: 64 KDTGIVRVKVNENYFRPTEV 83
G + V+V+ YFRP EV
Sbjct: 297 AKVGDIIVRVDPRYFRPAEV 316
>sp|Q9SNY3|GMD1_ARATH GDP-mannose 4,6 dehydratase 1 OS=Arabidopsis thaliana GN=GMD1 PE=2
SV=1
Length = 361
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 17/72 (23%)
Query: 12 AMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRV 71
AMW+MLQQ+ P D+V+AT E+H+V+EF++ +F Y+G + W KD V
Sbjct: 252 AMWLMLQQEKPDDYVVATEESHTVKEFLDVSFGYVG--LNW----KDH-----------V 294
Query: 72 KVNENYFRPTEV 83
++++ YFRPTEV
Sbjct: 295 EIDKRYFRPTEV 306
>sp|Q06952|GM4D1_VIBCH Probable GDP-mannose 4,6-dehydratase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=rfbD PE=3
SV=1
Length = 373
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 14 WMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKD-------- 65
WMMLQQD P+DFVIATG +SVREF++ + +G + + G G DE K
Sbjct: 239 WMMLQQDEPRDFVIATGVQYSVREFIDMSARELGIELEFVGKGVDEKAVVKSVIGTKAPA 298
Query: 66 --TGIVRVKVNENYFRPTEV 83
G + V V+ YFRP EV
Sbjct: 299 IKVGDIIVAVDPAYFRPAEV 318
>sp|P93031|GMD2_ARATH GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thaliana GN=MUR1 PE=1
SV=3
Length = 373
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 17/72 (23%)
Query: 12 AMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRV 71
AMW+MLQQ+ P D+V+AT E H+V EF++ +F Y+G + W KD V
Sbjct: 264 AMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLG--LNW-----------KDY----V 306
Query: 72 KVNENYFRPTEV 83
++++ YFRP EV
Sbjct: 307 EIDQRYFRPAEV 318
>sp|Q18LF9|DNBI_ELHVK Major DNA-binding protein OS=Elephantid herpesvirus 1 (isolate
Asian elephant/Berlin/Kiba/1998) PE=3 SV=1
Length = 1143
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 5 NLNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKE 63
N+N+S +W + +T ++F + G+ H V F++ F +T+ +EG+ +V E
Sbjct: 790 NVNVSPMTLWQRIYSNTLKNFNVDLGDKHDVETFIKFMF---EQTVEYEGSNSIDVRPE 845
>sp|Q51366|GM4D_PSEAE GDP-mannose 4,6-dehydratase OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=gca PE=1
SV=2
Length = 323
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 17/72 (23%)
Query: 12 AMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRV 71
AMW+MLQQD D+V+ATG T +VR+ + AF ++G +D +
Sbjct: 229 AMWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDY-------------RDF----L 271
Query: 72 KVNENYFRPTEV 83
K++ +FRP EV
Sbjct: 272 KIDPAFFRPAEV 283
>sp|A1VDL1|KDSA_DESVV 2-dehydro-3-deoxyphosphooctonate aldolase OS=Desulfovibrio
vulgaris subsp. vulgaris (strain DP4) GN=kdsA PE=3 SV=1
Length = 273
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 23 QDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVR 70
+DF +A H+VRE EAA L+ W+ + + + G+VR
Sbjct: 27 EDFDVAMETAHAVREAAEAAGLFAVFKSSWDKANRTSITSFRGPGLVR 74
>sp|P61654|KDSA_DESVH 2-dehydro-3-deoxyphosphooctonate aldolase OS=Desulfovibrio
vulgaris (strain Hildenborough / ATCC 29579 / NCIMB
8303) GN=kdsA PE=3 SV=1
Length = 273
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 23 QDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVR 70
+DF +A H+VRE EAA L+ W+ + + + G+VR
Sbjct: 27 EDFDVAMETAHAVREAAEAAGLFAVFKSSWDKANRTSITSFRGPGLVR 74
>sp|Q7VD64|TAL_PROMA Transaldolase OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=tal PE=3 SV=1
Length = 335
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 45 YIGKTIVW--EGTGKDEVGKEKDTGIVRVKVNENYFRP----TEVIG 85
++G+ + W TGKD E+D G+V V NY++ TEV+G
Sbjct: 181 FVGRILDWYKAETGKDSYAGEEDPGVVSVTKIFNYYKSNNYKTEVMG 227
>sp|P29152|POLG_PSBMV Genome polyprotein OS=Pea seed-borne mosaic virus (strain DPD1) PE=2
SV=1
Length = 3206
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 4 LNLNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEV 60
LN+N + AM+ ++D +DF A E V++ E L++GK VW G+ K E+
Sbjct: 2517 LNMNAAVGAMYQGKKKDYFEDFTAADREL-IVKQSCER--LFLGKKGVWNGSLKAEL 2570
>sp|A2BVI1|TAL_PROM5 Transaldolase OS=Prochlorococcus marinus (strain MIT 9515) GN=tal
PE=3 SV=1
Length = 333
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 45 YIGKTIVWEG--TGKDEVGKEKDTGIVRVKVNENYFR----PTEVIG 85
++G+ + W TGKD ++D G++ V NYF+ TEV+G
Sbjct: 181 FVGRILDWHKVKTGKDNFSGKEDPGVISVTKIYNYFKEKGFKTEVMG 227
>sp|Q12680|GLT1_YEAST Glutamate synthase [NADH] OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GLT1 PE=1 SV=2
Length = 2145
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 22 PQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRVK 72
P+D V+ E + + F AFL G T + G D VGK GI+ +K
Sbjct: 1345 PKDTVVVNIEGSAGQSF--GAFLASGITFILNGDANDYVGKGLSGGIIVIK 1393
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,045,055
Number of Sequences: 539616
Number of extensions: 1276464
Number of successful extensions: 2242
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2207
Number of HSP's gapped (non-prelim): 34
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)