Query psy15783
Match_columns 86
No_of_seqs 109 out of 1015
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 21:13:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1089 Gmd GDP-D-mannose dehy 100.0 4.3E-29 9.3E-34 190.0 7.6 83 2-84 215-306 (345)
2 KOG1372|consensus 99.9 1.3E-23 2.9E-28 159.0 7.9 83 1-84 243-334 (376)
3 TIGR01472 gmd GDP-mannose 4,6- 98.8 4.5E-08 9.7E-13 72.7 8.3 80 5-84 228-307 (343)
4 PLN02653 GDP-mannose 4,6-dehyd 98.5 5.7E-07 1.2E-11 66.6 7.1 64 4-84 233-296 (340)
5 PRK10217 dTDP-glucose 4,6-dehy 97.9 2.5E-05 5.3E-10 58.0 5.4 45 4-48 227-272 (355)
6 PLN02778 3,5-epimerase/4-reduc 97.9 4E-05 8.7E-10 56.8 5.9 50 5-54 196-245 (298)
7 PLN02166 dTDP-glucose 4,6-dehy 97.7 0.00013 2.8E-09 57.4 6.9 45 5-49 333-377 (436)
8 PLN02206 UDP-glucuronate decar 97.7 0.00014 2.9E-09 57.4 6.6 47 4-50 331-377 (442)
9 PRK15181 Vi polysaccharide bio 97.7 0.0001 2.2E-09 55.3 5.6 45 4-48 236-284 (348)
10 PRK10084 dTDP-glucose 4,6 dehy 97.7 9.9E-05 2.1E-09 54.7 5.2 44 5-48 235-279 (352)
11 TIGR01181 dTDP_gluc_dehyt dTDP 97.6 0.00018 4E-09 51.5 5.9 45 5-49 218-263 (317)
12 PLN02725 GDP-4-keto-6-deoxyman 97.6 0.00025 5.4E-09 51.0 6.2 47 4-50 206-253 (306)
13 TIGR02622 CDP_4_6_dhtase CDP-g 97.5 0.00026 5.5E-09 52.8 6.0 43 5-47 227-277 (349)
14 PRK10675 UDP-galactose-4-epime 97.5 0.0003 6.6E-09 51.6 6.0 47 4-50 234-284 (338)
15 PLN02240 UDP-glucose 4-epimera 97.5 0.00032 7E-09 51.7 6.0 46 5-50 242-293 (352)
16 PLN02260 probable rhamnose bio 97.5 0.00044 9.6E-09 56.2 7.0 45 5-49 227-272 (668)
17 COG1087 GalE UDP-glucose 4-epi 97.5 0.00032 7E-09 54.4 5.8 58 6-84 227-288 (329)
18 PRK11150 rfaD ADP-L-glycero-D- 97.5 0.00026 5.7E-09 51.5 5.1 45 4-48 212-256 (308)
19 TIGR02197 heptose_epim ADP-L-g 97.5 0.00028 6.1E-09 50.9 5.2 45 4-49 217-262 (314)
20 PLN02686 cinnamoyl-CoA reducta 97.4 0.00034 7.4E-09 53.2 5.8 45 5-50 279-327 (367)
21 PLN02695 GDP-D-mannose-3',5'-e 97.4 0.00041 8.8E-09 52.9 6.1 45 5-49 240-284 (370)
22 PLN02572 UDP-sulfoquinovose sy 97.3 0.00085 1.9E-08 52.7 6.3 46 4-50 312-364 (442)
23 TIGR01777 yfcH conserved hypot 97.2 0.0008 1.7E-08 47.9 5.5 46 5-50 199-245 (292)
24 TIGR01214 rmlD dTDP-4-dehydror 97.2 0.00084 1.8E-08 48.1 5.4 44 6-49 186-231 (287)
25 COG1088 RfbB dTDP-D-glucose 4, 97.2 0.0006 1.3E-08 53.0 4.8 45 6-50 221-266 (340)
26 PLN02427 UDP-apiose/xylose syn 97.2 0.00072 1.6E-08 51.2 5.1 44 5-48 261-308 (386)
27 PLN00016 RNA-binding protein; 97.2 0.0012 2.6E-08 50.1 6.2 48 4-51 247-296 (378)
28 PRK11908 NAD-dependent epimera 97.2 0.00085 1.8E-08 49.9 5.2 45 5-49 225-274 (347)
29 PLN02989 cinnamyl-alcohol dehy 97.0 0.0013 2.7E-08 48.3 4.8 44 4-48 228-272 (325)
30 CHL00194 ycf39 Ycf39; Provisio 97.0 0.0031 6.8E-08 46.6 6.5 46 5-50 178-225 (317)
31 PRK08125 bifunctional UDP-gluc 96.9 0.0017 3.7E-08 53.1 5.2 44 5-48 539-587 (660)
32 PRK09987 dTDP-4-dehydrorhamnos 96.8 0.0027 5.9E-08 46.7 5.1 40 8-47 195-235 (299)
33 TIGR01179 galE UDP-glucose-4-e 96.8 0.0037 8E-08 44.8 5.7 47 5-51 230-280 (328)
34 PLN02650 dihydroflavonol-4-red 96.8 0.0028 6E-08 47.2 5.1 43 4-47 229-272 (351)
35 PLN02214 cinnamoyl-CoA reducta 96.7 0.0035 7.5E-08 47.1 5.0 42 5-47 227-269 (342)
36 TIGR03466 HpnA hopanoid-associ 96.7 0.0045 9.8E-08 44.7 5.4 44 5-49 206-250 (328)
37 PLN02996 fatty acyl-CoA reduct 96.6 0.0026 5.6E-08 50.8 4.0 44 5-48 309-359 (491)
38 PLN02986 cinnamyl-alcohol dehy 96.6 0.005 1.1E-07 45.2 4.9 43 4-47 227-270 (322)
39 PLN00198 anthocyanidin reducta 96.5 0.0054 1.2E-07 45.4 4.9 43 4-47 241-284 (338)
40 PLN02662 cinnamyl-alcohol dehy 96.4 0.008 1.7E-07 43.7 5.2 44 4-48 226-270 (322)
41 PLN02896 cinnamyl-alcohol dehy 96.3 0.0079 1.7E-07 44.9 5.0 42 5-47 250-292 (353)
42 COG0451 WcaG Nucleoside-diphos 96.2 0.015 3.3E-07 41.6 5.7 47 4-50 213-260 (314)
43 KOG1429|consensus 96.1 0.017 3.8E-07 45.0 5.8 42 6-47 241-282 (350)
44 TIGR03589 PseB UDP-N-acetylglu 96.1 0.014 3E-07 43.5 5.0 44 5-49 203-247 (324)
45 TIGR01746 Thioester-redct thio 96.0 0.017 3.6E-07 42.0 5.1 45 5-50 234-282 (367)
46 PRK12320 hypothetical protein; 95.9 0.019 4E-07 48.5 5.7 41 5-45 162-202 (699)
47 PRK07201 short chain dehydroge 95.8 0.022 4.8E-07 45.6 5.5 46 5-50 224-271 (657)
48 PRK06482 short chain dehydroge 95.6 0.013 2.8E-07 41.9 3.2 45 4-48 219-264 (276)
49 KOG0747|consensus 95.6 0.016 3.4E-07 45.1 3.8 45 5-49 225-270 (331)
50 PRK05875 short chain dehydroge 95.4 0.031 6.8E-07 39.8 4.5 48 2-49 218-273 (276)
51 TIGR03649 ergot_EASG ergot alk 95.3 0.057 1.2E-06 38.9 5.8 48 5-52 170-219 (285)
52 PRK05865 hypothetical protein; 95.0 0.05 1.1E-06 46.9 5.2 41 5-45 159-201 (854)
53 PLN02657 3,8-divinyl protochlo 94.8 0.081 1.8E-06 40.8 5.7 45 6-50 253-300 (390)
54 KOG1371|consensus 94.6 0.049 1.1E-06 42.7 4.0 43 8-50 241-287 (343)
55 PLN02260 probable rhamnose bio 94.5 0.061 1.3E-06 43.9 4.5 42 6-47 568-609 (668)
56 PLN02583 cinnamoyl-CoA reducta 93.7 0.18 3.9E-06 37.0 5.2 43 4-46 220-263 (297)
57 PF04321 RmlD_sub_bind: RmlD s 93.3 0.041 8.9E-07 40.7 1.2 46 5-50 185-235 (286)
58 PRK09135 pteridine reductase; 92.3 0.17 3.6E-06 35.0 3.1 33 3-35 214-249 (249)
59 PF01073 3Beta_HSD: 3-beta hyd 91.1 0.69 1.5E-05 34.3 5.5 45 6-50 218-272 (280)
60 KOG1502|consensus 90.8 0.64 1.4E-05 36.3 5.2 43 5-48 230-273 (327)
61 PRK06914 short chain dehydroge 89.2 0.33 7.1E-06 34.6 2.4 34 3-36 226-260 (280)
62 COG1091 RfbD dTDP-4-dehydrorha 88.9 2 4.2E-05 32.9 6.5 44 6-49 185-229 (281)
63 KOG1431|consensus 88.3 2 4.3E-05 33.1 6.1 44 6-49 214-260 (315)
64 COG1090 Predicted nucleoside-d 87.3 1.4 3E-05 34.1 4.8 45 5-49 197-242 (297)
65 PRK07074 short chain dehydroge 84.3 1.5 3.2E-05 30.8 3.5 40 3-42 209-252 (257)
66 PF01935 DUF87: Domain of unkn 83.1 0.96 2.1E-05 31.8 2.1 22 28-49 33-54 (229)
67 PLN02503 fatty acyl-CoA reduct 82.9 2.3 4.9E-05 35.5 4.5 40 7-46 425-472 (605)
68 PRK08263 short chain dehydroge 81.6 2.5 5.5E-05 30.1 3.9 44 4-47 218-263 (275)
69 PF09866 DUF2093: Uncharacteri 78.7 2 4.4E-05 24.2 2.0 18 21-38 3-22 (42)
70 PF05368 NmrA: NmrA-like famil 78.4 7.8 0.00017 27.0 5.4 47 6-52 182-231 (233)
71 PF02719 Polysacc_synt_2: Poly 73.6 2.1 4.6E-05 32.9 1.6 43 7-49 207-250 (293)
72 TIGR01689 EcbF-BcbF capsule bi 70.2 7.6 0.00017 26.1 3.6 29 22-50 39-80 (126)
73 TIGR03443 alpha_am_amid L-amin 67.5 13 0.00028 32.7 5.2 45 5-50 1218-1266(1389)
74 PRK12935 acetoacetyl-CoA reduc 65.8 9 0.00019 26.5 3.3 29 3-31 214-245 (247)
75 PHA02757 hypothetical protein; 64.0 3.3 7.1E-05 25.8 0.7 20 21-40 23-43 (75)
76 PRK07806 short chain dehydroge 63.3 11 0.00024 26.1 3.4 32 2-33 212-245 (248)
77 PRK07523 gluconate 5-dehydroge 62.0 9.6 0.00021 26.6 2.9 34 2-35 218-255 (255)
78 PRK07774 short chain dehydroge 60.4 11 0.00024 26.0 3.0 32 3-34 214-249 (250)
79 PRK06077 fabG 3-ketoacyl-(acyl 59.1 16 0.00035 25.1 3.6 29 4-32 216-246 (252)
80 PRK13394 3-hydroxybutyrate deh 57.3 15 0.00032 25.5 3.2 29 3-31 227-259 (262)
81 TIGR01963 PHB_DH 3-hydroxybuty 55.8 17 0.00037 25.0 3.3 29 4-32 221-253 (255)
82 TIGR00250 RNAse_H_YqgF RNAse H 54.6 43 0.00093 22.3 5.0 47 9-55 36-91 (130)
83 PRK06123 short chain dehydroge 54.2 20 0.00044 24.6 3.5 29 3-31 216-248 (248)
84 TIGR00090 iojap_ybeB iojap-lik 52.9 35 0.00076 21.8 4.2 39 23-62 29-72 (99)
85 PRK13517 carboxylate-amine lig 52.3 34 0.00074 26.5 4.8 38 9-46 281-319 (373)
86 COG1086 Predicted nucleoside-d 52.2 76 0.0016 26.9 7.0 38 10-47 458-496 (588)
87 PRK12746 short chain dehydroge 50.2 23 0.00051 24.5 3.3 29 3-31 220-252 (254)
88 PRK12384 sorbitol-6-phosphate 47.8 32 0.00068 24.0 3.7 30 4-33 225-258 (259)
89 PRK12829 short chain dehydroge 47.8 26 0.00057 24.3 3.2 31 3-33 229-263 (264)
90 PRK12745 3-ketoacyl-(acyl-carr 47.0 34 0.00073 23.6 3.7 31 3-33 219-253 (256)
91 PRK00109 Holliday junction res 46.0 45 0.00098 22.4 4.1 45 10-54 43-96 (138)
92 TIGR01830 3oxo_ACP_reduc 3-oxo 46.0 33 0.00072 23.2 3.5 28 3-30 206-237 (239)
93 PRK06180 short chain dehydroge 44.7 34 0.00073 24.4 3.5 41 3-43 221-262 (277)
94 PRK13515 carboxylate-amine lig 44.6 47 0.001 25.7 4.5 38 9-46 275-313 (371)
95 cd01783 DAGK_delta_RA Ubiquiti 43.5 19 0.00042 23.5 1.9 25 25-49 19-43 (97)
96 PRK06182 short chain dehydroge 42.5 31 0.00067 24.4 3.0 30 3-32 220-250 (273)
97 PF00727 IL4: Interleukin 4 Th 42.4 75 0.0016 21.5 4.6 39 5-46 74-112 (117)
98 cd06167 LabA_like LabA_like pr 42.3 62 0.0013 20.9 4.2 40 6-50 85-126 (149)
99 PRK13700 conjugal transfer pro 42.0 13 0.00029 32.0 1.1 19 28-46 195-213 (732)
100 PRK10530 pyridoxal phosphate ( 41.4 34 0.00074 24.1 3.1 23 9-34 25-48 (272)
101 PRK11113 D-alanyl-D-alanine ca 41.0 58 0.0013 26.3 4.6 44 22-81 98-145 (477)
102 PRK12825 fabG 3-ketoacyl-(acyl 40.4 47 0.001 22.4 3.5 29 5-33 216-248 (249)
103 PRK11538 ribosome-associated p 39.9 49 0.0011 21.5 3.4 40 22-62 33-77 (105)
104 PRK10513 sugar phosphate phosp 39.3 43 0.00092 23.8 3.3 23 9-34 25-48 (270)
105 PRK12823 benD 1,6-dihydroxycyc 39.2 44 0.00096 23.2 3.3 29 3-31 226-258 (260)
106 PF02410 Oligomerisation: Olig 39.2 45 0.00097 21.1 3.1 41 21-62 27-73 (100)
107 PRK07067 sorbitol dehydrogenas 38.5 47 0.001 23.1 3.3 31 3-33 222-256 (257)
108 TIGR01482 SPP-subfamily Sucros 38.3 49 0.0011 22.6 3.4 18 22-39 30-49 (225)
109 KOG1430|consensus 38.3 80 0.0017 25.0 4.9 48 3-50 220-271 (361)
110 smart00242 MYSc Myosin. Large 36.9 44 0.00095 28.2 3.4 40 9-48 79-122 (677)
111 PRK07041 short chain dehydroge 36.7 61 0.0013 22.0 3.6 30 3-32 197-228 (230)
112 cd01384 MYSc_type_XI Myosin mo 36.7 45 0.00098 28.3 3.5 40 9-48 75-118 (674)
113 PRK01158 phosphoglycolate phos 36.6 51 0.0011 22.7 3.3 23 9-34 25-48 (230)
114 PRK10976 putative hydrolase; P 36.3 61 0.0013 23.0 3.7 23 9-34 24-47 (266)
115 PF03721 UDPG_MGDP_dh_N: UDP-g 35.4 82 0.0018 22.0 4.2 61 6-82 96-158 (185)
116 PF08282 Hydrolase_3: haloacid 34.6 38 0.00083 22.8 2.3 35 9-49 20-55 (254)
117 PRK15126 thiamin pyrimidine py 34.1 48 0.001 23.7 2.9 23 9-34 24-47 (272)
118 PF11142 DUF2917: Protein of u 34.0 31 0.00067 20.4 1.6 19 18-36 31-49 (63)
119 PF07282 OrfB_Zn_ribbon: Putat 34.0 70 0.0015 18.4 3.1 17 34-50 3-19 (69)
120 COG4939 Major membrane immunog 33.8 72 0.0016 22.3 3.5 31 16-46 103-133 (147)
121 PF12261 T_hemolysin: Thermost 33.8 97 0.0021 22.1 4.4 43 1-50 88-139 (179)
122 smart00197 SAA Serum amyloid A 33.8 24 0.00053 23.4 1.2 12 74-85 90-101 (103)
123 KOG1803|consensus 33.5 28 0.00061 29.7 1.8 19 28-46 211-229 (649)
124 PRK10347 cell filamentation pr 33.4 25 0.00055 25.5 1.3 26 29-54 139-164 (200)
125 smart00775 LNS2 LNS2 domain. T 33.1 88 0.0019 21.2 4.0 34 9-45 32-66 (157)
126 COG0799 Uncharacterized homolo 32.9 90 0.002 20.9 3.8 40 22-62 33-77 (115)
127 PF00543 P-II: Nitrogen regula 32.9 73 0.0016 19.9 3.3 29 5-33 66-97 (102)
128 PRK03669 mannosyl-3-phosphogly 32.9 60 0.0013 23.4 3.3 34 9-48 29-63 (271)
129 cd06409 PB1_MUG70 The MUG70 pr 32.4 1.3E+02 0.0029 19.0 4.8 55 22-77 9-64 (86)
130 PRK10444 UMP phosphatase; Prov 31.7 1E+02 0.0022 22.5 4.3 39 9-50 22-61 (248)
131 PRK12826 3-ketoacyl-(acyl-carr 31.5 77 0.0017 21.6 3.5 30 3-32 215-248 (251)
132 PF04029 2-ph_phosp: 2-phospho 31.4 83 0.0018 23.1 3.8 33 4-40 119-154 (233)
133 COG2184 Fic Protein involved i 30.4 34 0.00073 25.2 1.6 26 29-54 134-159 (201)
134 PRK07775 short chain dehydroge 30.3 76 0.0017 22.5 3.4 25 4-28 224-249 (274)
135 cd01387 MYSc_type_XV Myosin mo 30.0 80 0.0017 26.8 3.9 38 9-46 74-115 (677)
136 PF12846 AAA_10: AAA-like doma 29.9 43 0.00094 23.5 2.0 19 28-46 11-29 (304)
137 cd00124 MYSc Myosin motor doma 29.9 60 0.0013 27.3 3.2 40 9-48 73-116 (679)
138 TIGR02471 sucr_syn_bact_C sucr 29.7 45 0.00098 23.4 2.1 15 20-34 27-42 (236)
139 TIGR01766 tspaseT_teng_C trans 28.1 1E+02 0.0022 18.1 3.3 16 35-50 58-73 (82)
140 TIGR00666 PBP4 D-alanyl-D-alan 28.1 1.5E+02 0.0032 22.8 4.8 44 22-81 54-101 (345)
141 TIGR00288 conserved hypothetic 27.8 1.7E+02 0.0037 20.6 4.7 40 6-50 91-132 (160)
142 COG0561 Cof Predicted hydrolas 27.6 85 0.0018 22.3 3.2 34 10-49 26-60 (264)
143 cd04795 SIS SIS domain. SIS (S 27.6 1.3E+02 0.0028 17.2 3.7 54 25-78 2-59 (87)
144 cd01378 MYSc_type_I Myosin mot 27.4 85 0.0018 26.6 3.6 40 9-48 73-116 (674)
145 TIGR01487 SPP-like sucrose-pho 27.2 58 0.0013 22.4 2.3 35 9-49 23-58 (215)
146 PF04076 BOF: Bacterial OB fol 27.1 30 0.00064 22.6 0.7 21 63-83 55-75 (103)
147 PF03652 UPF0081: Uncharacteri 27.0 1.3E+02 0.0028 20.1 3.9 45 9-53 39-93 (135)
148 PF05402 PqqD: Coenzyme PQQ sy 26.9 1E+02 0.0022 17.4 3.0 32 6-49 15-46 (68)
149 COG3562 KpsS Capsule polysacch 26.7 2E+02 0.0043 23.3 5.3 27 24-50 83-109 (403)
150 TIGR01458 HAD-SF-IIA-hyp3 HAD- 26.5 1.1E+02 0.0025 22.1 3.8 41 9-51 26-66 (257)
151 COG0303 MoeA Molybdopterin bio 25.6 2.6E+02 0.0056 22.4 5.9 31 23-54 243-275 (404)
152 PLN02353 probable UDP-glucose 25.4 3.7E+02 0.008 21.8 6.9 59 5-82 102-163 (473)
153 PRK06128 oxidoreductase; Provi 25.3 99 0.0021 22.4 3.3 32 2-33 264-299 (300)
154 PRK05653 fabG 3-ketoacyl-(acyl 25.1 1E+02 0.0022 20.8 3.1 28 4-31 213-244 (246)
155 TIGR02461 osmo_MPG_phos mannos 25.1 89 0.0019 22.2 3.0 34 9-48 20-54 (225)
156 PF03469 XH: XH domain; Inter 24.3 1.2E+02 0.0026 20.9 3.3 40 7-46 80-125 (132)
157 COG3673 Uncharacterized conser 24.2 1.5E+02 0.0033 24.0 4.3 42 6-48 104-148 (423)
158 PRK12744 short chain dehydroge 23.9 1E+02 0.0022 21.5 3.0 30 3-32 223-255 (257)
159 PRK14627 hypothetical protein; 23.8 39 0.00085 21.8 0.8 20 64-83 43-63 (100)
160 TIGR00156 conserved hypothetic 23.7 52 0.0011 22.4 1.4 21 63-83 78-98 (126)
161 cd01381 MYSc_type_VII Myosin m 23.7 1.3E+02 0.0028 25.6 4.0 40 9-48 73-116 (671)
162 KOG0025|consensus 23.3 2.4E+02 0.0051 22.5 5.1 40 10-49 146-187 (354)
163 PF14250 AbrB-like: AbrB-like 23.1 1.2E+02 0.0025 18.9 2.8 23 10-33 44-67 (71)
164 PRK12828 short chain dehydroge 23.0 1.2E+02 0.0026 20.4 3.2 28 5-32 206-237 (239)
165 PTZ00174 phosphomannomutase; P 23.0 67 0.0015 23.0 2.0 23 9-34 27-50 (247)
166 PF13550 Phage-tail_3: Putativ 22.9 1.6E+02 0.0035 19.0 3.7 25 31-55 2-26 (164)
167 PF02575 YbaB_DNA_bd: YbaB/Ebf 22.7 57 0.0012 19.9 1.4 20 64-83 37-57 (93)
168 PF01936 NYN: NYN domain; Int 22.6 95 0.0021 19.6 2.5 37 9-50 84-122 (146)
169 TIGR01457 HAD-SF-IIA-hyp2 HAD- 22.4 1.6E+02 0.0034 21.2 3.8 39 9-50 22-61 (249)
170 PRK00153 hypothetical protein; 21.7 52 0.0011 21.0 1.1 19 65-83 46-65 (104)
171 PRK10665 nitrogen regulatory p 21.7 1.4E+02 0.0031 19.5 3.2 31 5-35 69-102 (112)
172 PRK14625 hypothetical protein; 21.3 47 0.001 22.0 0.8 20 64-83 44-64 (109)
173 COG1163 DRG Predicted GTPase [ 21.3 2.4E+02 0.0052 22.6 4.9 48 5-54 276-339 (365)
174 PRK12429 3-hydroxybutyrate deh 21.1 1.4E+02 0.0031 20.4 3.3 26 5-30 225-254 (258)
175 cd00887 MoeA MoeA family. Memb 21.1 3.7E+02 0.008 20.9 5.9 45 7-54 222-267 (394)
176 cd01385 MYSc_type_IX Myosin mo 21.0 1.4E+02 0.0029 25.5 3.7 39 9-47 81-123 (692)
177 cd05014 SIS_Kpsf KpsF-like pro 20.8 1.4E+02 0.003 18.5 3.0 29 25-53 4-32 (128)
178 PRK00536 speE spermidine synth 20.7 81 0.0018 23.7 2.1 29 13-41 64-93 (262)
179 PF10678 DUF2492: Protein of u 20.5 94 0.002 19.5 2.0 24 25-48 39-62 (78)
180 PRK06138 short chain dehydroge 20.4 1.5E+02 0.0033 20.2 3.3 29 3-31 217-249 (252)
181 cd05013 SIS_RpiR RpiR-like pro 20.1 2.1E+02 0.0045 17.5 3.6 30 23-52 14-44 (139)
182 cd01383 MYSc_type_VIII Myosin 20.1 1.5E+02 0.0032 25.2 3.7 39 9-47 79-121 (677)
No 1
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=4.3e-29 Score=189.98 Aligned_cols=83 Identities=55% Similarity=0.900 Sum_probs=80.7
Q ss_pred ccccHHH---------HHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHHHhCCceEeecCcccccceeccCCcEEEE
Q psy15783 2 TILNLNL---------SKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRVK 72 (86)
Q Consensus 2 ~~gn~~~---------~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~~g~~i~w~g~~~~e~~~~~~~~~~~v~ 72 (86)
.+||||+ .|+|||+|||+++|+|||||||++|||+||++++|+.+|++++|+|+|.+|+|+|..+|+..|+
T Consensus 215 ~lGNldAkRDWG~A~DYVe~mwlmLQq~~PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~ 294 (345)
T COG1089 215 YLGNLDAKRDWGHAKDYVEAMWLMLQQEEPDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVE 294 (345)
T ss_pred EeccccccccccchHHHHHHHHHHHccCCCCceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEE
Confidence 5899998 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcCCCCCC
Q psy15783 73 VNENYFRPTEVI 84 (86)
Q Consensus 73 iDp~~~RP~dv~ 84 (86)
+||+||||.||+
T Consensus 295 idp~~fRPaEV~ 306 (345)
T COG1089 295 IDPRYFRPAEVD 306 (345)
T ss_pred ECccccCchhhh
Confidence 999999999986
No 2
>KOG1372|consensus
Probab=99.89 E-value=1.3e-23 Score=159.03 Aligned_cols=83 Identities=61% Similarity=1.004 Sum_probs=77.3
Q ss_pred CccccHHH---------HHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHHHhCCceEeecCcccccceeccCCcEEE
Q psy15783 1 MTILNLNL---------SKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRV 71 (86)
Q Consensus 1 ~~~gn~~~---------~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~~g~~i~w~g~~~~e~~~~~~~~~~~v 71 (86)
|++|||.+ -|+|||+|||++.|+||+|+||+.||||||++.+|...|..+.|+|+|.++.|- +++|.+.|
T Consensus 243 ~~LGNL~a~RDWGhA~dYVEAMW~mLQ~d~PdDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~-n~~g~v~V 321 (376)
T KOG1372|consen 243 IELGNLSALRDWGHAGDYVEAMWLMLQQDSPDDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGK-NDDGVVRV 321 (376)
T ss_pred EEecchhhhcccchhHHHHHHHHHHHhcCCCCceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccc-cCCceEEE
Confidence 47899988 599999999999999999999999999999999999999999999999986655 68899999
Q ss_pred EEcCCCcCCCCCC
Q psy15783 72 KVNENYFRPTEVI 84 (86)
Q Consensus 72 ~iDp~~~RP~dv~ 84 (86)
++||++|||.||.
T Consensus 322 ~v~~kYyRPtEVd 334 (376)
T KOG1372|consen 322 KVDPKYYRPTEVD 334 (376)
T ss_pred EecccccCcchhh
Confidence 9999999999985
No 3
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=98.77 E-value=4.5e-08 Score=72.70 Aligned_cols=80 Identities=60% Similarity=0.978 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHHHhCCceEeecCcccccceeccCCcEEEEEcCCCcCCCCCC
Q psy15783 5 NLNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRVKVNENYFRPTEVI 84 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~~g~~i~w~g~~~~e~~~~~~~~~~~v~iDp~~~RP~dv~ 84 (86)
.|.++|+|++++++++.++.||||||+.+|++|+++.+.+.+|.++.|........++.....+..+.+++..+||.+++
T Consensus 228 ~V~D~a~a~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T TIGR01472 228 HAKDYVEAMWLMLQQDKPDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFRPTEVD 307 (343)
T ss_pred eHHHHHHHHHHHHhcCCCccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccCCCccc
Confidence 57889999999998876666999999999999999999999998776655444344444444445667777778887764
No 4
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=98.48 E-value=5.7e-07 Score=66.61 Aligned_cols=64 Identities=47% Similarity=0.836 Sum_probs=50.8
Q ss_pred ccHHHHHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHHHhCCceEeecCcccccceeccCCcEEEEEcCCCcCCCCC
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRVKVNENYFRPTEV 83 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~~g~~i~w~g~~~~e~~~~~~~~~~~v~iDp~~~RP~dv 83 (86)
..+.++++|++++++++.++.||||||+++|++|+++.+.+.+|.+ |.. .+.+++..+||.++
T Consensus 233 i~v~D~a~a~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~g~~--~~~---------------~~~~~~~~~~~~~~ 295 (340)
T PLN02653 233 GFAGDYVEAMWLMLQQEKPDDYVVATEESHTVEEFLEEAFGYVGLN--WKD---------------HVEIDPRYFRPAEV 295 (340)
T ss_pred eeHHHHHHHHHHHHhcCCCCcEEecCCCceeHHHHHHHHHHHcCCC--CCc---------------ceeeCcccCCcccc
Confidence 3678899999999988765569999999999999999999999864 111 35666666777665
Q ss_pred C
Q psy15783 84 I 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 296 ~ 296 (340)
T PLN02653 296 D 296 (340)
T ss_pred c
Confidence 4
No 5
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=97.90 E-value=2.5e-05 Score=57.96 Aligned_cols=45 Identities=11% Similarity=0.143 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCC
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~ 48 (86)
..++++|+|++++++++.++. |||++|+.+|++|+++.+.+.+|.
T Consensus 227 i~v~D~a~a~~~~~~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~ 272 (355)
T PRK10217 227 LYVEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEE 272 (355)
T ss_pred CcHHHHHHHHHHHHhcCCCCCeEEeCCCCcccHHHHHHHHHHHhcc
Confidence 468889999999999887787 999999999999999999998875
No 6
>PLN02778 3,5-epimerase/4-reductase
Probab=97.86 E-value=4e-05 Score=56.81 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=43.0
Q ss_pred cHHHHHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHHHhCCceEeec
Q psy15783 5 NLNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEG 54 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~~g~~i~w~g 54 (86)
-+.++|+|++++++++..|-|||+++..+|++||++++.+..|.++.|..
T Consensus 196 yv~D~v~al~~~l~~~~~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~ 245 (298)
T PLN02778 196 ILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKN 245 (298)
T ss_pred EHHHHHHHHHHHHhCCCCCeEEeCCCCcccHHHHHHHHHHHhCCCceecc
Confidence 46789999999998766555999999999999999999999998766633
No 7
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=97.71 E-value=0.00013 Score=57.43 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 5 NLNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
.+.++++|++++++.+..|.||||+|+..|++|+++.+.+.+|.+
T Consensus 333 ~V~Dva~ai~~~~~~~~~giyNIgs~~~~Si~ela~~I~~~~g~~ 377 (436)
T PLN02166 333 YVSDLVDGLVALMEGEHVGPFNLGNPGEFTMLELAEVVKETIDSS 377 (436)
T ss_pred EHHHHHHHHHHHHhcCCCceEEeCCCCcEeHHHHHHHHHHHhCCC
Confidence 578899999999987655569999999999999999999999864
No 8
>PLN02206 UDP-glucuronate decarboxylase
Probab=97.68 E-value=0.00014 Score=57.37 Aligned_cols=47 Identities=6% Similarity=0.025 Sum_probs=40.6
Q ss_pred ccHHHHHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
-.+.++++|+++++++...|.||||+|.++|++|+++.+.+.+|.+.
T Consensus 331 i~V~Dva~ai~~a~e~~~~g~yNIgs~~~~sl~Elae~i~~~~g~~~ 377 (442)
T PLN02206 331 QFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAKVVQETIDPNA 377 (442)
T ss_pred EeHHHHHHHHHHHHhcCCCceEEEcCCCceeHHHHHHHHHHHhCCCC
Confidence 35889999999999876555699999999999999999999998643
No 9
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=97.67 E-value=0.0001 Score=55.26 Aligned_cols=45 Identities=11% Similarity=0.063 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHHhcCC---CCCc-EEEecCceeeHHHHHHHHHHHhCC
Q psy15783 4 LNLNLSKYAMWMMLQQD---TPQD-FVIATGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~---~pgd-YnI~SG~~~SV~d~l~~~~~~~g~ 48 (86)
..++++|+|+++++++. .+++ ||||+|+.+|++|+++.+.+.++.
T Consensus 236 i~v~D~a~a~~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~ 284 (348)
T PRK15181 236 CYIENVIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNL 284 (348)
T ss_pred EEHHHHHHHHHHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhCc
Confidence 35788999999888643 2566 999999999999999999998874
No 10
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=97.65 E-value=9.9e-05 Score=54.69 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCC
Q psy15783 5 NLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~ 48 (86)
.+.++++|++++++++.++. |||++++..|++|+++.+.+.+|.
T Consensus 235 ~v~D~a~a~~~~l~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~ 279 (352)
T PRK10084 235 YVEDHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDE 279 (352)
T ss_pred EHHHHHHHHHHHHhcCCCCceEEeCCCCcCcHHHHHHHHHHHhcc
Confidence 57889999999998776677 999999999999999999999985
No 11
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=97.60 E-value=0.00018 Score=51.48 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 5 NLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
.++++++++..++++..++. ||+|+++++|.+|+++++.+.+|.+
T Consensus 218 ~v~D~a~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~ 263 (317)
T TIGR01181 218 YVEDHCRAIYLVLEKGRVGETYNIGGGNERTNLEVVETILELLGKD 263 (317)
T ss_pred EHHHHHHHHHHHHcCCCCCceEEeCCCCceeHHHHHHHHHHHhCCC
Confidence 47889999999998877877 9999999999999999999999864
No 12
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=97.57 E-value=0.00025 Score=51.03 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
..+.++++|+++++++..++. ||+++|.+.|++|+++.+.+..|.+.
T Consensus 206 i~v~Dv~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~ 253 (306)
T PLN02725 206 LHVDDLADAVVFLMRRYSGAEHVNVGSGDEVTIKELAELVKEVVGFEG 253 (306)
T ss_pred ccHHHHHHHHHHHHhccccCcceEeCCCCcccHHHHHHHHHHHhCCCC
Confidence 457889999999998765545 99999999999999999999988643
No 13
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=97.53 E-value=0.00026 Score=52.83 Aligned_cols=43 Identities=9% Similarity=0.050 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHhcCC-----CCCc-EEEecC--ceeeHHHHHHHHHHHhC
Q psy15783 5 NLNLSKYAMWMMLQQD-----TPQD-FVIATG--ETHSVREFVEAAFLYIG 47 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~-----~pgd-YnI~SG--~~~SV~d~l~~~~~~~g 47 (86)
.+.++|+|+++++++. .+++ |||+|| .+.|++|+++.+++..+
T Consensus 227 ~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~ 277 (349)
T TIGR02622 227 HVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWW 277 (349)
T ss_pred eHHHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhc
Confidence 4678999999888642 3455 999997 79999999999998764
No 14
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=97.50 E-value=0.0003 Score=51.58 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHHHhcC--CCC-Cc-EEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 4 LNLNLSKYAMWMMLQQ--DTP-QD-FVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~--~~p-gd-YnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
-.+.++++|++++++. ..+ +. ||||+|+..|++|+++.+.+..|.++
T Consensus 234 v~v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~ 284 (338)
T PRK10675 234 IHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPV 284 (338)
T ss_pred EEHHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCCC
Confidence 3578899999999975 223 46 99999999999999999999999765
No 15
>PLN02240 UDP-glucose 4-epimerase
Probab=97.49 E-value=0.00032 Score=51.72 Aligned_cols=46 Identities=24% Similarity=0.166 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHhcC----CCC-Cc-EEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 5 NLNLSKYAMWMMLQQ----DTP-QD-FVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 5 n~~~~v~a~~~ll~~----~~p-gd-YnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
.+.++++|++.++++ +.+ ++ |||++|+..|++|+++.+.+.+|.++
T Consensus 242 ~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~ 293 (352)
T PLN02240 242 HVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKI 293 (352)
T ss_pred EHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCC
Confidence 478899998888753 233 46 99999999999999999999998754
No 16
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=97.47 E-value=0.00044 Score=56.23 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 5 NLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
.+.++++|+++++++..++. |||++++.+|++|+++.+.+.+|.+
T Consensus 227 hV~Dva~a~~~~l~~~~~~~vyni~~~~~~s~~el~~~i~~~~g~~ 272 (668)
T PLN02260 227 YCEDVAEAFEVVLHKGEVGHVYNIGTKKERRVIDVAKDICKLFGLD 272 (668)
T ss_pred EHHHHHHHHHHHHhcCCCCCEEEECCCCeeEHHHHHHHHHHHhCCC
Confidence 47889999999998877777 9999999999999999999999875
No 17
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.46 E-value=0.00032 Score=54.43 Aligned_cols=58 Identities=24% Similarity=0.256 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcC----CCCCcEEEecCceeeHHHHHHHHHHHhCCceEeecCcccccceeccCCcEEEEEcCCCcCCC
Q psy15783 6 LNLSKYAMWMMLQQ----DTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRVKVNENYFRPT 81 (86)
Q Consensus 6 ~~~~v~a~~~ll~~----~~pgdYnI~SG~~~SV~d~l~~~~~~~g~~i~w~g~~~~e~~~~~~~~~~~v~iDp~~~RP~ 81 (86)
|.+.++|-+++|+. +...-||++||+.+||+|+++.+-+.+|.++ .+++-| -||.
T Consensus 227 V~DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~i-------------------p~~~~~--RR~G 285 (329)
T COG1087 227 VDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDI-------------------PVEIAP--RRAG 285 (329)
T ss_pred hhHHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhCCcC-------------------ceeeCC--CCCC
Confidence 55566666666642 2232399999999999999999999999987 677766 5667
Q ss_pred CCC
Q psy15783 82 EVI 84 (86)
Q Consensus 82 dv~ 84 (86)
|++
T Consensus 286 Dpa 288 (329)
T COG1087 286 DPA 288 (329)
T ss_pred CCc
Confidence 765
No 18
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=97.46 E-value=0.00026 Score=51.52 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHHHhCC
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~~g~ 48 (86)
-.+.++++|+.++++++..+-||+++|+.+|++|+++.+.+..|.
T Consensus 212 i~v~D~a~a~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~~~ 256 (308)
T PRK11150 212 VYVGDVAAVNLWFWENGVSGIFNCGTGRAESFQAVADAVLAYHKK 256 (308)
T ss_pred eeHHHHHHHHHHHHhcCCCCeEEcCCCCceeHHHHHHHHHHHhCC
Confidence 467889999999988754334999999999999999999999885
No 19
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=97.45 E-value=0.00028 Score=50.91 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
-.++++++|++.++++ .++. ||+++++..|++|+++.+.+..|.+
T Consensus 217 i~v~D~a~~i~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~~ 262 (314)
T TIGR02197 217 VYVKDVVDVNLWLLEN-GVSGIFNLGTGRARSFNDLADAVFKALGKD 262 (314)
T ss_pred EEHHHHHHHHHHHHhc-ccCceEEcCCCCCccHHHHHHHHHHHhCCC
Confidence 3578899999999988 4555 9999999999999999999999875
No 20
>PLN02686 cinnamoyl-CoA reductase
Probab=97.44 E-value=0.00034 Score=53.23 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHhcC---CCCCc-EEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 5 NLNLSKYAMWMMLQQ---DTPQD-FVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 5 n~~~~v~a~~~ll~~---~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
+|+++++|++++++. +.++. | ||+|+.+|++|+++.+.+.+|.++
T Consensus 279 ~V~Dva~A~~~al~~~~~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~ 327 (367)
T PLN02686 279 DVERLAEAHVCVYEAMGNKTAFGRY-ICFDHVVSREDEAEELARQIGLPI 327 (367)
T ss_pred EHHHHHHHHHHHHhccCCCCCCCcE-EEeCCCccHHHHHHHHHHHcCCCC
Confidence 588999999999985 34566 8 999999999999999999998764
No 21
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=97.43 E-value=0.00041 Score=52.88 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 5 NLNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
.+.+++++++++++++.++.||+++|+.+|++|+++.+.+.+|..
T Consensus 240 ~v~D~a~ai~~~~~~~~~~~~nv~~~~~~s~~el~~~i~~~~g~~ 284 (370)
T PLN02695 240 FIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIALSFENKK 284 (370)
T ss_pred eHHHHHHHHHHHHhccCCCceEecCCCceeHHHHHHHHHHHhCCC
Confidence 578899999999887654449999999999999999999998864
No 22
>PLN02572 UDP-sulfoquinovose synthase
Probab=97.26 E-value=0.00085 Score=52.68 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHHhcCC-CCC--c-EEEecCceeeHHHHHHHHHHH---hCCce
Q psy15783 4 LNLNLSKYAMWMMLQQD-TPQ--D-FVIATGETHSVREFVEAAFLY---IGKTI 50 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~-~pg--d-YnI~SG~~~SV~d~l~~~~~~---~g~~i 50 (86)
-.|+++|+|+++++++. .+| . ||+++ ..+|++|+++++.+. +|.++
T Consensus 312 i~V~Dva~a~~~al~~~~~~g~~~i~Nigs-~~~si~el~~~i~~~~~~~g~~~ 364 (442)
T PLN02572 312 LDIRDTVRCIEIAIANPAKPGEFRVFNQFT-EQFSVNELAKLVTKAGEKLGLDV 364 (442)
T ss_pred EEHHHHHHHHHHHHhChhhcCceeEEEeCC-CceeHHHHHHHHHHHHHhhCCCC
Confidence 35889999999999865 345 4 99987 689999999999998 88665
No 23
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=97.24 E-value=0.0008 Score=47.86 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHhcCCCCC-cEEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 5 NLNLSKYAMWMMLQQDTPQ-DFVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pg-dYnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
.++++++++..+++++... .||++++...|++|+++.+.+.+|.+.
T Consensus 199 ~v~Dva~~i~~~l~~~~~~g~~~~~~~~~~s~~di~~~i~~~~g~~~ 245 (292)
T TIGR01777 199 HIEDLVQLILFALENASISGPVNATAPEPVRNKEFAKALARALHRPA 245 (292)
T ss_pred eHHHHHHHHHHHhcCcccCCceEecCCCccCHHHHHHHHHHHhCCCC
Confidence 5788999999999875544 499999999999999999999998653
No 24
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=97.22 E-value=0.00084 Score=48.09 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCC-CCCc-EEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 6 LNLSKYAMWMMLQQD-TPQD-FVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 6 ~~~~v~a~~~ll~~~-~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
++++++|++.+++++ ..+. |||+++...|++|+++.+.+.+|.+
T Consensus 186 v~Dva~a~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~ 231 (287)
T TIGR01214 186 AKDLARVIAALLQRLARARGVYHLANSGQCSWYEFAQAIFEEAGAD 231 (287)
T ss_pred HHHHHHHHHHHHhhccCCCCeEEEECCCCcCHHHHHHHHHHHhCcc
Confidence 788999999999875 3455 9999999999999999999999875
No 25
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=97.21 E-value=0.0006 Score=53.04 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 6 LNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 6 ~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
|.+-|+|.++.|.++++|+ |||++|...+-.|+++.+++.+|.+.
T Consensus 221 VeDh~~ai~~Vl~kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~ 266 (340)
T COG1088 221 VEDHCRAIDLVLTKGKIGETYNIGGGNERTNLEVVKTICELLGKDK 266 (340)
T ss_pred eHhHHHHHHHHHhcCcCCceEEeCCCccchHHHHHHHHHHHhCccc
Confidence 4567999999999999999 99999999999999999999998753
No 26
>PLN02427 UDP-apiose/xylose synthase
Probab=97.20 E-value=0.00072 Score=51.16 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHhcCC--CCCc-EEEecC-ceeeHHHHHHHHHHHhCC
Q psy15783 5 NLNLSKYAMWMMLQQD--TPQD-FVIATG-ETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~--~pgd-YnI~SG-~~~SV~d~l~~~~~~~g~ 48 (86)
.|.++++|+++++++. .+|. |||++| +.+|++|+++++.+..|.
T Consensus 261 ~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~ 308 (386)
T PLN02427 261 YIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAK 308 (386)
T ss_pred eHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhcc
Confidence 5788999999999875 3577 999998 699999999999999874
No 27
>PLN00016 RNA-binding protein; Provisional
Probab=97.18 E-value=0.0012 Score=50.14 Aligned_cols=48 Identities=8% Similarity=0.009 Sum_probs=41.9
Q ss_pred ccHHHHHHHHHHHhcCCC-CCc-EEEecCceeeHHHHHHHHHHHhCCceE
Q psy15783 4 LNLNLSKYAMWMMLQQDT-PQD-FVIATGETHSVREFVEAAFLYIGKTIV 51 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~-pgd-YnI~SG~~~SV~d~l~~~~~~~g~~i~ 51 (86)
.+++++++|+.+++++.. .+. |||++++.+|++|+++.+.+.+|.+..
T Consensus 247 i~v~Dva~ai~~~l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~ 296 (378)
T PLN00016 247 GHVKDLASMFALVVGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEE 296 (378)
T ss_pred ecHHHHHHHHHHHhcCccccCCEEEecCCCccCHHHHHHHHHHHhCCCCc
Confidence 368899999999998753 467 999999999999999999999998753
No 28
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=97.18 E-value=0.00085 Score=49.92 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHHhcCC---CCCc-EEEecC-ceeeHHHHHHHHHHHhCCc
Q psy15783 5 NLNLSKYAMWMMLQQD---TPQD-FVIATG-ETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~---~pgd-YnI~SG-~~~SV~d~l~~~~~~~g~~ 49 (86)
.+.++++|+.+++++. .+|. |||+++ ...|++|+++.+.+.+|..
T Consensus 225 ~v~D~a~a~~~~~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~ 274 (347)
T PRK11908 225 DIDDGIDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEY 274 (347)
T ss_pred cHHHHHHHHHHHHhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCc
Confidence 5778999999999875 3577 999997 5899999999999998853
No 29
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=97.03 E-value=0.0013 Score=48.29 Aligned_cols=44 Identities=9% Similarity=0.221 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCC
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~ 48 (86)
-.++++++|++++++++..+. ||+ +|.++|++|+++++.+..+.
T Consensus 228 i~v~Dva~a~~~~l~~~~~~~~~ni-~~~~~s~~ei~~~i~~~~~~ 272 (325)
T PLN02989 228 VDVRDVALAHVKALETPSANGRYII-DGPVVTIKDIENVLREFFPD 272 (325)
T ss_pred eEHHHHHHHHHHHhcCcccCceEEE-ecCCCCHHHHHHHHHHHCCC
Confidence 358999999999998866544 999 57799999999999999873
No 30
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.96 E-value=0.0031 Score=46.60 Aligned_cols=46 Identities=9% Similarity=0.047 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHhcCCC-CCc-EEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 5 NLNLSKYAMWMMLQQDT-PQD-FVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~-pgd-YnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
.+.++++++..+++++. .|. |||++++.+|++|+++.+.+.+|.++
T Consensus 178 ~v~Dva~~~~~~l~~~~~~~~~~ni~g~~~~s~~el~~~~~~~~g~~~ 225 (317)
T CHL00194 178 DTQDAAKFCLKSLSLPETKNKTFPLVGPKSWNSSEIISLCEQLSGQKA 225 (317)
T ss_pred CHHHHHHHHHHHhcCccccCcEEEecCCCccCHHHHHHHHHHHhCCCC
Confidence 46889999999997654 466 99999999999999999999999865
No 31
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=96.92 E-value=0.0017 Score=53.14 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHhcCCC---CCc-EEEecCc-eeeHHHHHHHHHHHhCC
Q psy15783 5 NLNLSKYAMWMMLQQDT---PQD-FVIATGE-THSVREFVEAAFLYIGK 48 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~---pgd-YnI~SG~-~~SV~d~l~~~~~~~g~ 48 (86)
.++++++|+++++++.. .|+ ||||+|+ .+|++|+++.+.+.+|.
T Consensus 539 ~v~Dva~a~~~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~ 587 (660)
T PRK08125 539 DIRDGIEALFRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEK 587 (660)
T ss_pred eHHHHHHHHHHHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhcc
Confidence 58889999999998752 477 9999996 79999999999999885
No 32
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=96.82 E-value=0.0027 Score=46.74 Aligned_cols=40 Identities=10% Similarity=0.165 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhC
Q psy15783 8 LSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIG 47 (86)
Q Consensus 8 ~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g 47 (86)
++++++.+++++...+. ||+|++...|++||++.+++.++
T Consensus 195 ~~~~~~~~~~~~~~~~giyni~~~~~~s~~e~~~~i~~~~~ 235 (299)
T PRK09987 195 CTAHAIRVALNKPEVAGLYHLVASGTTTWHDYAALVFEEAR 235 (299)
T ss_pred HHHHHHHHhhccCCCCCeEEeeCCCCccHHHHHHHHHHHHH
Confidence 35667777776544445 99999999999999999988654
No 33
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=96.82 E-value=0.0037 Score=44.81 Aligned_cols=47 Identities=19% Similarity=0.077 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHhcCC---CCCc-EEEecCceeeHHHHHHHHHHHhCCceE
Q psy15783 5 NLNLSKYAMWMMLQQD---TPQD-FVIATGETHSVREFVEAAFLYIGKTIV 51 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~---~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~i~ 51 (86)
.+.++++|+..++++. ..+. ||++++.++|++|+++.+.+..|.++.
T Consensus 230 ~~~D~a~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~ 280 (328)
T TIGR01179 230 HVMDLADAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFP 280 (328)
T ss_pred eHHHHHHHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcc
Confidence 4678999999998652 3345 999999999999999999999998754
No 34
>PLN02650 dihydroflavonol-4-reductase
Probab=96.80 E-value=0.0028 Score=47.24 Aligned_cols=43 Identities=7% Similarity=0.153 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhC
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIG 47 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g 47 (86)
..|.++++|++++++++.++. | +++|+.+|++|+++++.+.++
T Consensus 229 v~V~Dva~a~~~~l~~~~~~~~~-i~~~~~~s~~el~~~i~~~~~ 272 (351)
T PLN02650 229 VHLDDLCNAHIFLFEHPAAEGRY-ICSSHDATIHDLAKMLREKYP 272 (351)
T ss_pred eeHHHHHHHHHHHhcCcCcCceE-EecCCCcCHHHHHHHHHHhCc
Confidence 468889999999998876655 9 789999999999999999775
No 35
>PLN02214 cinnamoyl-CoA reductase
Probab=96.70 E-value=0.0035 Score=47.08 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhC
Q psy15783 5 NLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIG 47 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g 47 (86)
.|+++++|++++++++.++. ||+|++ ..|++|+++.+.+.++
T Consensus 227 ~V~Dva~a~~~al~~~~~~g~yn~~~~-~~~~~el~~~i~~~~~ 269 (342)
T PLN02214 227 DVRDVALAHVLVYEAPSASGRYLLAES-ARHRGEVVEILAKLFP 269 (342)
T ss_pred EHHHHHHHHHHHHhCcccCCcEEEecC-CCCHHHHHHHHHHHCC
Confidence 58899999999999877655 999984 7899999999999875
No 36
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.69 E-value=0.0045 Score=44.69 Aligned_cols=44 Identities=9% Similarity=0.283 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 5 NLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
.++++++|+.+++++..+|. |++ +|+.+|++||++.+.+.+|.+
T Consensus 206 ~v~D~a~a~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~g~~ 250 (328)
T TIGR03466 206 HVDDVAEGHLLALERGRIGERYIL-GGENLTLKQILDKLAEITGRP 250 (328)
T ss_pred EHHHHHHHHHHHHhCCCCCceEEe-cCCCcCHHHHHHHHHHHhCCC
Confidence 47889999999998877888 777 589999999999999999875
No 37
>PLN02996 fatty acyl-CoA reductase
Probab=96.61 E-value=0.0026 Score=50.80 Aligned_cols=44 Identities=11% Similarity=0.238 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHHhcCC----CCCc-EEEecC--ceeeHHHHHHHHHHHhCC
Q psy15783 5 NLNLSKYAMWMMLQQD----TPQD-FVIATG--ETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~----~pgd-YnI~SG--~~~SV~d~l~~~~~~~g~ 48 (86)
.|+++|+|+++++.+. .++. ||+||| .++|++++++.+.+..+.
T Consensus 309 ~Vddvv~a~l~a~~~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~ 359 (491)
T PLN02996 309 PADMVVNAMIVAMAAHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSK 359 (491)
T ss_pred cccHHHHHHHHHHHHhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhh
Confidence 4677999999998752 2456 999999 999999999999987654
No 38
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=96.55 E-value=0.005 Score=45.16 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=37.3
Q ss_pred ccHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhC
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIG 47 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g 47 (86)
-.++++++|+++++++..++. ||+ +|..+|++|+++++.+..+
T Consensus 227 v~v~Dva~a~~~al~~~~~~~~yni-~~~~~s~~e~~~~i~~~~~ 270 (322)
T PLN02986 227 VDVRDVALAHIKALETPSANGRYII-DGPIMSVNDIIDILRELFP 270 (322)
T ss_pred eEHHHHHHHHHHHhcCcccCCcEEE-ecCCCCHHHHHHHHHHHCC
Confidence 368899999999998876666 999 5789999999999999875
No 39
>PLN00198 anthocyanidin reductase; Provisional
Probab=96.50 E-value=0.0054 Score=45.37 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhC
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIG 47 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g 47 (86)
-.|+++|+|+++++++...+. | +++|..+|++|+++.+.+..+
T Consensus 241 i~V~D~a~a~~~~~~~~~~~~~~-~~~~~~~s~~el~~~i~~~~~ 284 (338)
T PLN00198 241 THVEDVCRAHIFLAEKESASGRY-ICCAANTSVPELAKFLIKRYP 284 (338)
T ss_pred eEHHHHHHHHHHHhhCcCcCCcE-EEecCCCCHHHHHHHHHHHCC
Confidence 358889999999998876555 8 788999999999999998875
No 40
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=96.40 E-value=0.008 Score=43.69 Aligned_cols=44 Identities=7% Similarity=0.031 Sum_probs=36.9
Q ss_pred ccHHHHHHHHHHHhcCCCC-CcEEEecCceeeHHHHHHHHHHHhCC
Q psy15783 4 LNLNLSKYAMWMMLQQDTP-QDFVIATGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~p-gdYnI~SG~~~SV~d~l~~~~~~~g~ 48 (86)
..+.++++|++++++++.. |.||++ |...|++|+++.+.+..+.
T Consensus 226 i~v~Dva~a~~~~~~~~~~~~~~~~~-g~~~s~~e~~~~i~~~~~~ 270 (322)
T PLN02662 226 VDVRDVANAHIQAFEIPSASGRYCLV-ERVVHYSEVVKILHELYPT 270 (322)
T ss_pred EEHHHHHHHHHHHhcCcCcCCcEEEe-CCCCCHHHHHHHHHHHCCC
Confidence 4678999999999987654 459986 7899999999999998753
No 41
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=96.34 E-value=0.0079 Score=44.92 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhC
Q psy15783 5 NLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIG 47 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g 47 (86)
.+.++|+|++++++++.++. | +++|+.+|++|+++.+.+.++
T Consensus 250 ~v~Dva~a~~~~l~~~~~~~~~-~~~~~~~s~~el~~~i~~~~~ 292 (353)
T PLN02896 250 HIEDICDAHIFLMEQTKAEGRY-ICCVDSYDMSELINHLSKEYP 292 (353)
T ss_pred eHHHHHHHHHHHHhCCCcCccE-EecCCCCCHHHHHHHHHHhCC
Confidence 57789999999998766555 8 578999999999999999886
No 42
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.21 E-value=0.015 Score=41.60 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHhcCCCCCcEEEecCc-eeeHHHHHHHHHHHhCCce
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQDFVIATGE-THSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pgdYnI~SG~-~~SV~d~l~~~~~~~g~~i 50 (86)
-.++++++|+.+++++..++-|||+++. ..|++|+++.+.+..|...
T Consensus 213 i~v~D~a~~~~~~~~~~~~~~~ni~~~~~~~~~~e~~~~~~~~~~~~~ 260 (314)
T COG0451 213 VYVDDVADALLLALENPDGGVFNIGSGTAEITVRELAEAVAEAVGSKA 260 (314)
T ss_pred EeHHHHHHHHHHHHhCCCCcEEEeCCCCCcEEHHHHHHHHHHHhCCCC
Confidence 3488899999999998776689999997 9999999999999999863
No 43
>KOG1429|consensus
Probab=96.10 E-value=0.017 Score=45.03 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHHHhC
Q psy15783 6 LNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIG 47 (86)
Q Consensus 6 ~~~~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~~g 47 (86)
|++.|+|+.+|++.+..+-+||++-..+|+.||.+++.+..|
T Consensus 241 vsD~Vegll~Lm~s~~~~pvNiGnp~e~Tm~elAemv~~~~~ 282 (350)
T KOG1429|consen 241 VSDLVEGLLRLMESDYRGPVNIGNPGEFTMLELAEMVKELIG 282 (350)
T ss_pred HHHHHHHHHHHhcCCCcCCcccCCccceeHHHHHHHHHHHcC
Confidence 688999999999998887799999999999999999999874
No 44
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=96.06 E-value=0.014 Score=43.50 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 5 NLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
.++++|+|+++++++..+++ | +++|..+|++|+++.+.+...+.
T Consensus 203 ~v~D~a~a~~~al~~~~~~~~~-~~~~~~~sv~el~~~i~~~~~~~ 247 (324)
T TIGR03589 203 TLEQGVNFVLKSLERMLGGEIF-VPKIPSMKITDLAEAMAPECPHK 247 (324)
T ss_pred EHHHHHHHHHHHHhhCCCCCEE-ccCCCcEEHHHHHHHHHhhCCee
Confidence 57889999999998876778 7 69999999999999999976554
No 45
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=95.99 E-value=0.017 Score=41.96 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHHhcCCCC---Cc-EEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 5 NLNLSKYAMWMMLQQDTP---QD-FVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~p---gd-YnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
.++++++++..++....+ +. ||+++++..|++|+++.+.+ +|.++
T Consensus 234 ~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~ 282 (367)
T TIGR01746 234 PVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER-AGYNL 282 (367)
T ss_pred cHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH-cCCCC
Confidence 467899999999876654 66 99999999999999999988 88765
No 46
>PRK12320 hypothetical protein; Provisional
Probab=95.93 E-value=0.019 Score=48.46 Aligned_cols=41 Identities=17% Similarity=-0.003 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHHH
Q psy15783 5 NLNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLY 45 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~ 45 (86)
.++++|+|+.++++++..|-||||+|+.+|++|+++++...
T Consensus 162 yVdDvv~alv~al~~~~~GiyNIG~~~~~Si~el~~~i~~~ 202 (699)
T PRK12320 162 HLDDLVRFLVLALNTDRNGVVDLATPDTTNVVTAWRLLRSV 202 (699)
T ss_pred EHHHHHHHHHHHHhCCCCCEEEEeCCCeeEHHHHHHHHHHh
Confidence 57899999999998755445999999999999988877654
No 47
>PRK07201 short chain dehydrogenase; Provisional
Probab=95.80 E-value=0.022 Score=45.62 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHhcCC-CCCc-EEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 5 NLNLSKYAMWMMLQQD-TPQD-FVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~-~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
.++++++|+..+++.. ..|. |||++++..|++|+++.+.+.+|.+.
T Consensus 224 ~vddva~ai~~~~~~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~ 271 (657)
T PRK07201 224 PVDYVADALDHLMHKDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPP 271 (657)
T ss_pred eHHHHHHHHHHHhcCcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCc
Confidence 4788999999998754 3577 99999999999999999999998864
No 48
>PRK06482 short chain dehydrogenase; Provisional
Probab=95.63 E-value=0.013 Score=41.92 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCC
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~ 48 (86)
|+++++++|+..++.++.++. ||+++|...+++|++...++.++.
T Consensus 219 ~d~~~~~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 264 (276)
T PRK06482 219 GDPQKMVQAMIASADQTPAPRRLTLGSDAYASIRAALSERLAALEA 264 (276)
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEecChHHHHHHHHHHHHHHHHHHH
Confidence 788999999999998777766 999999999999999988887753
No 49
>KOG0747|consensus
Probab=95.62 E-value=0.016 Score=45.11 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 5 NLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
-|.++++|+-+.++++.+|+ |||+|-.+.++-|+.+.+.+..+..
T Consensus 225 ~veD~~ea~~~v~~Kg~~geIYNIgtd~e~~~~~l~k~i~eli~~~ 270 (331)
T KOG0747|consen 225 YVEDVSEAFKAVLEKGELGEIYNIGTDDEMRVIDLAKDICELFEKR 270 (331)
T ss_pred eHHHHHHHHHHHHhcCCccceeeccCcchhhHHHHHHHHHHHHHHh
Confidence 46789999999999999999 9999999999999999999988774
No 50
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.38 E-value=0.031 Score=39.80 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=40.4
Q ss_pred ccccHHHHHHHHHHHhcCCC---CCc-EEEecCcee----eHHHHHHHHHHHhCCc
Q psy15783 2 TILNLNLSKYAMWMMLQQDT---PQD-FVIATGETH----SVREFVEAAFLYIGKT 49 (86)
Q Consensus 2 ~~gn~~~~v~a~~~ll~~~~---pgd-YnI~SG~~~----SV~d~l~~~~~~~g~~ 49 (86)
+.|++.++++++..++++.. .|. |++++|... ++.|+++.+++..|.+
T Consensus 218 ~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 273 (276)
T PRK05875 218 RVGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGADGLR 273 (276)
T ss_pred CCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhHHHHh
Confidence 35788999999999997654 377 999999987 9999999999887764
No 51
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.34 E-value=0.057 Score=38.89 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHhcCCCC-Cc-EEEecCceeeHHHHHHHHHHHhCCceEe
Q psy15783 5 NLNLSKYAMWMMLQQDTP-QD-FVIATGETHSVREFVEAAFLYIGKTIVW 52 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~p-gd-YnI~SG~~~SV~d~l~~~~~~~g~~i~w 52 (86)
.+++++++++.+|....+ +. |+++.++.+|.+|+++.+.+.+|.++.+
T Consensus 170 ~~~Dva~~~~~~l~~~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~ 219 (285)
T TIGR03649 170 SADDIARVAYRALTDKVAPNTDYVVLGPELLTYDDVAEILSRVLGRKITH 219 (285)
T ss_pred cHHHHHHHHHHHhcCCCcCCCeEEeeCCccCCHHHHHHHHHHHhCCceEE
Confidence 467899999999877543 45 9999999999999999999999998753
No 52
>PRK05865 hypothetical protein; Provisional
Probab=94.96 E-value=0.05 Score=46.87 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHhcCC-CCCc-EEEecCceeeHHHHHHHHHHH
Q psy15783 5 NLNLSKYAMWMMLQQD-TPQD-FVIATGETHSVREFVEAAFLY 45 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~-~pgd-YnI~SG~~~SV~d~l~~~~~~ 45 (86)
.+.++++|+++++++. ..+. ||||+|+++|++|+++.+.+.
T Consensus 159 hVdDVA~Ai~~aL~~~~~~ggvyNIgsg~~~Si~EIae~l~~~ 201 (854)
T PRK05865 159 HSDDAQRLLVRALLDTVIDSGPVNLAAPGELTFRRIAAALGRP 201 (854)
T ss_pred eHHHHHHHHHHHHhCCCcCCCeEEEECCCcccHHHHHHHHhhh
Confidence 4788999999998654 3455 999999999999999988764
No 53
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.83 E-value=0.081 Score=40.84 Aligned_cols=45 Identities=16% Similarity=0.037 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCC-CCCc-EEEec-CceeeHHHHHHHHHHHhCCce
Q psy15783 6 LNLSKYAMWMMLQQD-TPQD-FVIAT-GETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 6 ~~~~v~a~~~ll~~~-~pgd-YnI~S-G~~~SV~d~l~~~~~~~g~~i 50 (86)
+.++++++..++... ..+. |||++ ++..|++|+++++++.+|.++
T Consensus 253 v~DlA~~i~~~~~~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~ 300 (390)
T PLN02657 253 EADLASFIADCVLDESKINKVLPIGGPGKALTPLEQGEMLFRILGKEP 300 (390)
T ss_pred HHHHHHHHHHHHhCccccCCEEEcCCCCcccCHHHHHHHHHHHhCCCC
Confidence 567888888888543 4566 99998 589999999999999999865
No 54
>KOG1371|consensus
Probab=94.64 E-value=0.049 Score=42.73 Aligned_cols=43 Identities=23% Similarity=0.077 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCC----CCcEEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 8 LSKYAMWMMLQQDT----PQDFVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 8 ~~v~a~~~ll~~~~----pgdYnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
+.+++-..++++.. -+-||++||...||.+++..+-+.+|.++
T Consensus 241 Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~ 287 (343)
T KOG1371|consen 241 DLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGVKI 287 (343)
T ss_pred ehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcCCC
Confidence 34566666665443 24599999999999999999999999987
No 55
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=94.52 E-value=0.061 Score=43.87 Aligned_cols=42 Identities=17% Similarity=0.024 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHHHhC
Q psy15783 6 LNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIG 47 (86)
Q Consensus 6 ~~~~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~~g 47 (86)
+.+++.+++.+++.+..|-||++++..+|.+||++.+++..+
T Consensus 568 ~~~~~~~~~~l~~~~~~giyni~~~~~~s~~e~a~~i~~~~~ 609 (668)
T PLN02260 568 LDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKDYID 609 (668)
T ss_pred hhhHHHHHHHHHHhCCCceEEecCCCcCcHHHHHHHHHHhcC
Confidence 455778888888754445599999999999999999999874
No 56
>PLN02583 cinnamoyl-CoA reductase
Probab=93.67 E-value=0.18 Score=36.98 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHh
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYI 46 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~ 46 (86)
-+|+++++|++++|++...+. |+++++..++-.++++++.+..
T Consensus 220 v~V~Dva~a~~~al~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 263 (297)
T PLN02583 220 VDVNFLVDAHIRAFEDVSSYGRYLCFNHIVNTEEDAVKLAQMLS 263 (297)
T ss_pred EEHHHHHHHHHHHhcCcccCCcEEEecCCCccHHHHHHHHHHhC
Confidence 468999999999999877777 9888887777778888887754
No 57
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=93.28 E-value=0.041 Score=40.67 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHhcCCCC-----CcEEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 5 NLNLSKYAMWMMLQQDTP-----QDFVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~p-----gdYnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
.+.++++++..|+++..+ |-|++|+....|-.||++.+++..|.+.
T Consensus 185 ~~~dlA~~i~~l~~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~ 235 (286)
T PF04321_consen 185 YVDDLARVILELIEKNLSGASPWGIYHLSGPERVSRYEFAEAIAKILGLDP 235 (286)
T ss_dssp EHHHHHHHHHHHHHHHHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTHCT
T ss_pred EHHHHHHHHHHHHHhcccccccceeEEEecCcccCHHHHHHHHHHHhCCCC
Confidence 367789999999988765 7799999999999999999999998864
No 58
>PRK09135 pteridine reductase; Provisional
Probab=92.27 E-value=0.17 Score=35.00 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=25.0
Q ss_pred cccHHHHHHHHHHHh-cCC-CCCc-EEEecCceeeH
Q psy15783 3 ILNLNLSKYAMWMML-QQD-TPQD-FVIATGETHSV 35 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll-~~~-~pgd-YnI~SG~~~SV 35 (86)
.|.+.++++|++.++ +.+ .+|. |||++|+..|+
T Consensus 214 ~~~~~d~a~~~~~~~~~~~~~~g~~~~i~~g~~~~~ 249 (249)
T PRK09135 214 IGTPEDIAEAVRFLLADASFITGQILAVDGGRSLTL 249 (249)
T ss_pred CcCHHHHHHHHHHHcCccccccCcEEEECCCeeccC
Confidence 467899999995555 433 3788 99999998763
No 59
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=91.11 E-value=0.69 Score=34.27 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=34.3
Q ss_pred HHHHHHHHHHH----hcC----CCCCc-EEEecCceee-HHHHHHHHHHHhCCce
Q psy15783 6 LNLSKYAMWMM----LQQ----DTPQD-FVIATGETHS-VREFVEAAFLYIGKTI 50 (86)
Q Consensus 6 ~~~~v~a~~~l----l~~----~~pgd-YnI~SG~~~S-V~d~l~~~~~~~g~~i 50 (86)
|..++.|.++. ++. ...|. |+|+-|++.. ..||...+++.+|++.
T Consensus 218 V~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~ 272 (280)
T PF01073_consen 218 VENVAHAHVLAAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPP 272 (280)
T ss_pred HHHHHHHHHHHHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCC
Confidence 33455555544 433 23688 9999999999 9999999999999975
No 60
>KOG1502|consensus
Probab=90.78 E-value=0.64 Score=36.29 Aligned_cols=43 Identities=7% Similarity=0.139 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCC
Q psy15783 5 NLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~ 48 (86)
+|++++.|.++++++...+. |.+++...+ ..|+++++.+..-.
T Consensus 230 dVrDVA~AHv~a~E~~~a~GRyic~~~~~~-~~ei~~~l~~~~P~ 273 (327)
T KOG1502|consen 230 DVRDVALAHVLALEKPSAKGRYICVGEVVS-IKEIADILRELFPD 273 (327)
T ss_pred eHHHHHHHHHHHHcCcccCceEEEecCccc-HHHHHHHHHHhCCC
Confidence 78999999999999998777 876666666 99999999887643
No 61
>PRK06914 short chain dehydrogenase; Provisional
Probab=89.18 E-value=0.33 Score=34.60 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHHHhcCCCCCc-EEEecCceeeHH
Q psy15783 3 ILNLNLSKYAMWMMLQQDTPQD-FVIATGETHSVR 36 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~ 36 (86)
++++++++++++.+++++.+.. |+++++...+++
T Consensus 226 ~~~~~dva~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (280)
T PRK06914 226 FGNPIDVANLIVEIAESKRPKLRYPIGKGVKLMIL 260 (280)
T ss_pred cCCHHHHHHHHHHHHcCCCCCcccccCCchHHHHH
Confidence 4688999999999999988877 999999998887
No 62
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=88.91 E-value=2 Score=32.86 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 6 LNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 6 ~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
+++++++++.++++...+- |.++.-..+|.-||...+|+.++.+
T Consensus 185 ~~dlA~~i~~ll~~~~~~~~yH~~~~g~~Swydfa~~I~~~~~~~ 229 (281)
T COG1091 185 TEDLADAILELLEKEKEGGVYHLVNSGECSWYEFAKAIFEEAGVD 229 (281)
T ss_pred HHHHHHHHHHHHhccccCcEEEEeCCCcccHHHHHHHHHHHhCCC
Confidence 5678999999999887765 9888888899999999999999875
No 63
>KOG1431|consensus
Probab=88.32 E-value=2 Score=33.09 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCCCCc-EEEecCc--eeeHHHHHHHHHHHhCCc
Q psy15783 6 LNLSKYAMWMMLQQDTPQD-FVIATGE--THSVREFVEAAFLYIGKT 49 (86)
Q Consensus 6 ~~~~v~a~~~ll~~~~pgd-YnI~SG~--~~SV~d~l~~~~~~~g~~ 49 (86)
+.+.+++++.+|.+=..-+ .++++|+ +.|++|..+...+..+..
T Consensus 214 s~DLA~l~i~vlr~Y~~vEpiils~ge~~EVtI~e~aeaV~ea~~F~ 260 (315)
T KOG1431|consen 214 SDDLADLFIWVLREYEGVEPIILSVGESDEVTIREAAEAVVEAVDFT 260 (315)
T ss_pred HhHHHHHHHHHHHhhcCccceEeccCccceeEHHHHHHHHHHHhCCC
Confidence 4567899999987655556 9999999 999999999999998764
No 64
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=87.27 E-value=1.4 Score=34.13 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHhcC-CCCCcEEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 5 NLNLSKYAMWMMLQQ-DTPQDFVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 5 n~~~~v~a~~~ll~~-~~pgdYnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
.++|+|+|+..++++ ..+|-||.++-.+.+-++|.+.+-+.++.+
T Consensus 197 hieD~v~~I~fll~~~~lsGp~N~taP~PV~~~~F~~al~r~l~RP 242 (297)
T COG1090 197 HIEDLVNAILFLLENEQLSGPFNLTAPNPVRNKEFAHALGRALHRP 242 (297)
T ss_pred eHHHHHHHHHHHHhCcCCCCcccccCCCcCcHHHHHHHHHHHhCCC
Confidence 478999999999987 558889999999999999999999988765
No 65
>PRK07074 short chain dehydrogenase; Provisional
Probab=84.32 E-value=1.5 Score=30.76 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=32.9
Q ss_pred cccHHHHHHHHHHHhcCC---CCCc-EEEecCceeeHHHHHHHH
Q psy15783 3 ILNLNLSKYAMWMMLQQD---TPQD-FVIATGETHSVREFVEAA 42 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~---~pgd-YnI~SG~~~SV~d~l~~~ 42 (86)
.+.+.+++++++.++... ..|. +++..|...+++|+++.+
T Consensus 209 ~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~ 252 (257)
T PRK07074 209 FATPDDVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTL 252 (257)
T ss_pred CCCHHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhh
Confidence 367788999999999653 2578 889999999999998865
No 66
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=83.12 E-value=0.96 Score=31.80 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=18.8
Q ss_pred ecCceeeHHHHHHHHHHHhCCc
Q psy15783 28 ATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 28 ~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
+|||+++++-+++.+++..+..
T Consensus 33 GsGKS~~~~~ll~~l~~~~~~~ 54 (229)
T PF01935_consen 33 GSGKSNTVKVLLEELLKKKGAK 54 (229)
T ss_pred CCCHHHHHHHHHHHHHhcCCCC
Confidence 6999999999999999755554
No 67
>PLN02503 fatty acyl-CoA reductase 2
Probab=82.86 E-value=2.3 Score=35.54 Aligned_cols=40 Identities=8% Similarity=0.145 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhc----C-CCCCc-EEEecC--ceeeHHHHHHHHHHHh
Q psy15783 7 NLSKYAMWMMLQ----Q-DTPQD-FVIATG--ETHSVREFVEAAFLYI 46 (86)
Q Consensus 7 ~~~v~a~~~ll~----~-~~pgd-YnI~SG--~~~SV~d~l~~~~~~~ 46 (86)
+.+|.|+++++. + ...+. ||++|+ .+.+.+++++.+.+..
T Consensus 425 D~vvna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~ 472 (605)
T PLN02503 425 DMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHY 472 (605)
T ss_pred cHHHHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHH
Confidence 346777777742 1 22467 999999 9999999999998754
No 68
>PRK08263 short chain dehydrogenase; Provisional
Probab=81.59 E-value=2.5 Score=30.12 Aligned_cols=44 Identities=7% Similarity=0.161 Sum_probs=35.5
Q ss_pred ccHHHHHHHHHHHhcCCCCC-cEEEecC-ceeeHHHHHHHHHHHhC
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQ-DFVIATG-ETHSVREFVEAAFLYIG 47 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pg-dYnI~SG-~~~SV~d~l~~~~~~~g 47 (86)
++..++++++..+++++.+. .|++++| .+.+..++.+.+.+-.+
T Consensus 218 ~~p~dva~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (275)
T PRK08263 218 GDPEAAAEALLKLVDAENPPLRLFLGSGVLDLAKADYERRLATWEE 263 (275)
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEEeCchHHHHHHHHHHHHHHHHHH
Confidence 67889999999999987654 5777766 78899999998887543
No 69
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=78.71 E-value=2 Score=24.25 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.2
Q ss_pred CCCcEEEe--cCceeeHHHH
Q psy15783 21 TPQDFVIA--TGETHSVREF 38 (86)
Q Consensus 21 ~pgdYnI~--SG~~~SV~d~ 38 (86)
.||+|++| ||+...+.++
T Consensus 3 ~pG~~V~CAVTg~~IpLd~L 22 (42)
T PF09866_consen 3 SPGSFVRCAVTGQPIPLDEL 22 (42)
T ss_pred cCCCEEEEEeeCCcccHHHh
Confidence 58999999 7998888775
No 70
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=78.41 E-value=7.8 Score=26.96 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCCC---CcEEEecCceeeHHHHHHHHHHHhCCceEe
Q psy15783 6 LNLSKYAMWMMLQQDTP---QDFVIATGETHSVREFVEAAFLYIGKTIVW 52 (86)
Q Consensus 6 ~~~~v~a~~~ll~~~~p---gdYnI~SG~~~SV~d~l~~~~~~~g~~i~w 52 (86)
++++.++...++..... +.+...+|...|.+|+++.+-+.+|.++++
T Consensus 182 ~~Dvg~~va~il~~p~~~~~~~~~~~~~~~~t~~eia~~~s~~~G~~v~y 231 (233)
T PF05368_consen 182 TRDVGRAVAAILLDPEKHNNGKTIFLAGETLTYNEIAAILSKVLGKKVKY 231 (233)
T ss_dssp HHHHHHHHHHHHHSGGGTTEEEEEEEGGGEEEHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHcChHHhcCCEEEEeCCCCCCHHHHHHHHHHHHCCccEE
Confidence 46677777777755432 344555669999999999999999998754
No 71
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=73.65 E-value=2.1 Score=32.86 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 7 NLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 7 ~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
...|+-....+..+..|+ |+.--|++.++.|+++.+++..|..
T Consensus 207 ~EAv~Lvl~a~~~~~~geifvl~mg~~v~I~dlA~~~i~~~g~~ 250 (293)
T PF02719_consen 207 EEAVQLVLQAAALAKGGEIFVLDMGEPVKILDLAEAMIELSGLE 250 (293)
T ss_dssp HHHHHHHHHHHHH--TTEEEEE---TCEECCCHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHhhCCCCcEEEecCCCCcCHHHHHHHHHhhcccc
Confidence 345555566666677899 9999999999999999999999864
No 72
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=70.17 E-value=7.6 Score=26.10 Aligned_cols=29 Identities=10% Similarity=-0.059 Sum_probs=21.9
Q ss_pred CCc-EEEecCceeeHHH------------HHHHHHHHhCCce
Q psy15783 22 PQD-FVIATGETHSVRE------------FVEAAFLYIGKTI 50 (86)
Q Consensus 22 pgd-YnI~SG~~~SV~d------------~l~~~~~~~g~~i 50 (86)
.|- .+++|||+....+ .+..-++.-+++.
T Consensus 39 ~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipY 80 (126)
T TIGR01689 39 LGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPY 80 (126)
T ss_pred CCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCC
Confidence 354 9999999998766 6666677777765
No 73
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=67.52 E-value=13 Score=32.73 Aligned_cols=45 Identities=4% Similarity=-0.018 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHhcCCC---CCc-EEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 5 NLNLSKYAMWMMLQQDT---PQD-FVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~---pgd-YnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
.|+++++|++.++.+.. .+. ||++++...++.++++.+.+ .|.++
T Consensus 1218 ~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~-~g~~~ 1266 (1389)
T TIGR03443 1218 PVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKT-YGYDV 1266 (1389)
T ss_pred cHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHH-hCCCC
Confidence 37789999999987553 345 99999999999999998865 35543
No 74
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=65.84 E-value=9 Score=26.49 Aligned_cols=29 Identities=7% Similarity=0.001 Sum_probs=22.6
Q ss_pred cccHHHHHHHHHHHhcCC--CCCc-EEEecCc
Q psy15783 3 ILNLNLSKYAMWMMLQQD--TPQD-FVIATGE 31 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~--~pgd-YnI~SG~ 31 (86)
.+.+.++++++..+++.. .+|+ |+|++|.
T Consensus 214 ~~~~edva~~~~~~~~~~~~~~g~~~~i~~g~ 245 (247)
T PRK12935 214 FGQADEIAKGVVYLCRDGAYITGQQLNINGGL 245 (247)
T ss_pred CcCHHHHHHHHHHHcCcccCccCCEEEeCCCc
Confidence 456788899998888765 4677 9999885
No 75
>PHA02757 hypothetical protein; Provisional
Probab=64.01 E-value=3.3 Score=25.75 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=14.8
Q ss_pred CCCcEEEecC-ceeeHHHHHH
Q psy15783 21 TPQDFVIATG-ETHSVREFVE 40 (86)
Q Consensus 21 ~pgdYnI~SG-~~~SV~d~l~ 40 (86)
.|+||||+.| .+...+++++
T Consensus 23 gpfDFni~C~v~Qe~~~eild 43 (75)
T PHA02757 23 GPFDFNIACGVDQEKANEILD 43 (75)
T ss_pred CCccEEEEcCccHHHHHHHhc
Confidence 3678999999 6666666655
No 76
>PRK07806 short chain dehydrogenase; Provisional
Probab=63.34 E-value=11 Score=26.06 Aligned_cols=32 Identities=0% Similarity=-0.071 Sum_probs=24.1
Q ss_pred ccccHHHHHHHHHHHhcCCC-CCc-EEEecCcee
Q psy15783 2 TILNLNLSKYAMWMMLQQDT-PQD-FVIATGETH 33 (86)
Q Consensus 2 ~~gn~~~~v~a~~~ll~~~~-pgd-YnI~SG~~~ 33 (86)
+.+.+.+++++++.+++.+. .|. |+|+.|+.+
T Consensus 212 ~~~~~~dva~~~~~l~~~~~~~g~~~~i~~~~~~ 245 (248)
T PRK07806 212 KLYTVSEFAAEVARAVTAPVPSGHIEYVGGADYF 245 (248)
T ss_pred ccCCHHHHHHHHHHHhhccccCccEEEecCccce
Confidence 35678888999998887653 567 888888654
No 77
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=62.00 E-value=9.6 Score=26.62 Aligned_cols=34 Identities=12% Similarity=0.018 Sum_probs=26.1
Q ss_pred ccccHHHHHHHHHHHhcCCC---CCc-EEEecCceeeH
Q psy15783 2 TILNLNLSKYAMWMMLQQDT---PQD-FVIATGETHSV 35 (86)
Q Consensus 2 ~~gn~~~~v~a~~~ll~~~~---pgd-YnI~SG~~~SV 35 (86)
+.+...+++.+++.|+.... .|. +++..|.+.|+
T Consensus 218 ~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg~~~~~ 255 (255)
T PRK07523 218 RWGKVEELVGACVFLASDASSFVNGHVLYVDGGITASL 255 (255)
T ss_pred CCcCHHHHHHHHHHHcCchhcCccCcEEEECCCeeccC
Confidence 35678889999988886543 477 99999987764
No 78
>PRK07774 short chain dehydrogenase; Provisional
Probab=60.41 E-value=11 Score=26.02 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=24.6
Q ss_pred cccHHHHHHHHHHHhcCC---CCCc-EEEecCceee
Q psy15783 3 ILNLNLSKYAMWMMLQQD---TPQD-FVIATGETHS 34 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~---~pgd-YnI~SG~~~S 34 (86)
.+++.+++++++.+++.. ..|. ||+++|+..+
T Consensus 214 ~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~g~~~~ 249 (250)
T PRK07774 214 MGTPEDLVGMCLFLLSDEASWITGQIFNVDGGQIIR 249 (250)
T ss_pred CcCHHHHHHHHHHHhChhhhCcCCCEEEECCCeecc
Confidence 467788999999988764 3577 9999987643
No 79
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.05 E-value=16 Score=25.14 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=21.6
Q ss_pred ccHHHHHHHHHHHhcCC-CCCc-EEEecCce
Q psy15783 4 LNLNLSKYAMWMMLQQD-TPQD-FVIATGET 32 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~-~pgd-YnI~SG~~ 32 (86)
..+.+++++++.+++.. ..|. |++++|..
T Consensus 216 ~~~~dva~~~~~~~~~~~~~g~~~~i~~g~~ 246 (252)
T PRK06077 216 LDPEEVAEFVAAILKIESITGQVFVLDSGES 246 (252)
T ss_pred CCHHHHHHHHHHHhCccccCCCeEEecCCee
Confidence 46678889988888643 4677 99998853
No 80
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=57.31 E-value=15 Score=25.49 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=21.6
Q ss_pred cccHHHHHHHHHHHhcCCCC---Cc-EEEecCc
Q psy15783 3 ILNLNLSKYAMWMMLQQDTP---QD-FVIATGE 31 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~~p---gd-YnI~SG~ 31 (86)
..++.+++++++.++++..+ |. |+++.|.
T Consensus 227 ~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g~ 259 (262)
T PRK13394 227 FTTVEDVAQTVLFLSSFPSAALTGQSFVVSHGW 259 (262)
T ss_pred CCCHHHHHHHHHHHcCccccCCcCCEEeeCCce
Confidence 45678899999999876543 67 8888774
No 81
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=55.76 E-value=17 Score=25.02 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHHHhcCC---CCCc-EEEecCce
Q psy15783 4 LNLNLSKYAMWMMLQQD---TPQD-FVIATGET 32 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~---~pgd-YnI~SG~~ 32 (86)
.++.+++++++.++++. .+|. |+++.|..
T Consensus 221 ~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~g~~ 253 (255)
T TIGR01963 221 VTVDEVAETALFLASDAAAGITGQAIVLDGGWT 253 (255)
T ss_pred cCHHHHHHHHHHHcCccccCccceEEEEcCccc
Confidence 45778899998888653 2567 88888765
No 82
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=54.56 E-value=43 Score=22.32 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCCCcEEEe-----cCceee----HHHHHHHHHHHhCCceEeecC
Q psy15783 9 SKYAMWMMLQQDTPQDFVIA-----TGETHS----VREFVEAAFLYIGKTIVWEGT 55 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgdYnI~-----SG~~~S----V~d~l~~~~~~~g~~i~w~g~ 55 (86)
....+..++++-.|..++|| .|.... +++|.+.+.+..++++.|-.|
T Consensus 36 ~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DE 91 (130)
T TIGR00250 36 DWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDE 91 (130)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 34566667777778779999 887766 788999888878998865443
No 83
>PRK06123 short chain dehydrogenase; Provisional
Probab=54.18 E-value=20 Score=24.63 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=21.1
Q ss_pred cccHHHHHHHHHHHhcCC---CCCc-EEEecCc
Q psy15783 3 ILNLNLSKYAMWMMLQQD---TPQD-FVIATGE 31 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~---~pgd-YnI~SG~ 31 (86)
.|+++++++++..++... ..|. |++++|+
T Consensus 216 ~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~gg~ 248 (248)
T PRK06123 216 GGTAEEVARAILWLLSDEASYTTGTFIDVSGGR 248 (248)
T ss_pred CcCHHHHHHHHHHHhCccccCccCCEEeecCCC
Confidence 367788888888888654 3577 8887764
No 84
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=52.89 E-value=35 Score=21.76 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=25.7
Q ss_pred Cc-EEEecCcee----eHHHHHHHHHHHhCCceEeecCcccccce
Q psy15783 23 QD-FVIATGETH----SVREFVEAAFLYIGKTIVWEGTGKDEVGK 62 (86)
Q Consensus 23 gd-YnI~SG~~~----SV~d~l~~~~~~~g~~i~w~g~~~~e~~~ 62 (86)
.| |+||||.+. ++.+-+...++..|... ++-||.++..+
T Consensus 29 ~dy~VI~Tg~S~rh~~aia~~v~~~~k~~~~~~-~~~EG~~~~~W 72 (99)
T TIGR00090 29 ADYFVIASGTSSRHVKAIADNVEEELKEAGLKP-LGVEGLEEGDW 72 (99)
T ss_pred cCEEEEEEeCCHHHHHHHHHHHHHHHHHcCCCc-ccccCCCCCCE
Confidence 47 999999875 46666666777777753 34445555555
No 85
>PRK13517 carboxylate-amine ligase; Provisional
Probab=52.33 E-value=34 Score=26.50 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHh
Q psy15783 9 SKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYI 46 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~ 46 (86)
+.+++|.....+-.+. +...+|+..+++++++.+++.+
T Consensus 281 ~~~n~wrAar~Gl~a~~~~~~~~~~~p~~~~~~~ll~~~ 319 (373)
T PRK13517 281 VQENKWRAARYGLDAEIIDDADGRERPVTDDLRDLLERL 319 (373)
T ss_pred HHHHHHHHHhcCCCceeecCCCCcEeEHHHHHHHHHHHH
Confidence 6788999999999998 7788999999999999998866
No 86
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=52.23 E-value=76 Score=26.94 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhC
Q psy15783 10 KYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIG 47 (86)
Q Consensus 10 v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g 47 (86)
|+-.+......+-|| |++--|++.++.|+.+.+.+.+|
T Consensus 458 v~LVlqA~a~~~gGeifvldMGepvkI~dLAk~mi~l~g 496 (588)
T COG1086 458 VQLVLQAGAIAKGGEIFVLDMGEPVKIIDLAKAMIELAG 496 (588)
T ss_pred HHHHHHHHhhcCCCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence 333333444456789 99999999999999999999997
No 87
>PRK12746 short chain dehydrogenase; Provisional
Probab=50.19 E-value=23 Score=24.49 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=21.5
Q ss_pred cccHHHHHHHHHHHhcCC---CCCc-EEEecCc
Q psy15783 3 ILNLNLSKYAMWMMLQQD---TPQD-FVIATGE 31 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~---~pgd-YnI~SG~ 31 (86)
++.+++++++++.++... .+|. |+|++|.
T Consensus 220 ~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~~ 252 (254)
T PRK12746 220 IGQVEDIADAVAFLASSDSRWVTGQIIDVSGGF 252 (254)
T ss_pred CCCHHHHHHHHHHHcCcccCCcCCCEEEeCCCc
Confidence 346788999988888653 2577 9999884
No 88
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=47.76 E-value=32 Score=23.96 Aligned_cols=30 Identities=3% Similarity=0.035 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHHHhcCC---CCCc-EEEecCcee
Q psy15783 4 LNLNLSKYAMWMMLQQD---TPQD-FVIATGETH 33 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~---~pgd-YnI~SG~~~ 33 (86)
+...+++++++.|+.+. ..|. |+|++|++.
T Consensus 225 ~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g~~~ 258 (259)
T PRK12384 225 CDYQDVLNMLLFYASPKASYCTGQSINVTGGQVM 258 (259)
T ss_pred CCHHHHHHHHHHHcCcccccccCceEEEcCCEEe
Confidence 45677888888887644 2477 999988763
No 89
>PRK12829 short chain dehydrogenase; Provisional
Probab=47.75 E-value=26 Score=24.27 Aligned_cols=31 Identities=0% Similarity=-0.053 Sum_probs=21.7
Q ss_pred cccHHHHHHHHHHHhcCC---CCCc-EEEecCcee
Q psy15783 3 ILNLNLSKYAMWMMLQQD---TPQD-FVIATGETH 33 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~---~pgd-YnI~SG~~~ 33 (86)
+..+.+++++++.++... ..|+ |+|++|+++
T Consensus 229 ~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~g~~~ 263 (264)
T PRK12829 229 MVEPEDIAATALFLASPAARYITGQAISVDGNVEY 263 (264)
T ss_pred CCCHHHHHHHHHHHcCccccCccCcEEEeCCCccc
Confidence 345677888888887542 2477 888888753
No 90
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.98 E-value=34 Score=23.65 Aligned_cols=31 Identities=10% Similarity=-0.064 Sum_probs=22.6
Q ss_pred cccHHHHHHHHHHHhcCCC---CCc-EEEecCcee
Q psy15783 3 ILNLNLSKYAMWMMLQQDT---PQD-FVIATGETH 33 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~~---pgd-YnI~SG~~~ 33 (86)
.+...++++++..+++... .|+ |+|+.|...
T Consensus 219 ~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg~~~ 253 (256)
T PRK12745 219 WGEPEDVARAVAALASGDLPYSTGQAIHVDGGLSI 253 (256)
T ss_pred CcCHHHHHHHHHHHhCCcccccCCCEEEECCCeec
Confidence 4567788888888886543 477 999888654
No 91
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=46.01 E-value=45 Score=22.44 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCCCCcEEEe-----cCce----eeHHHHHHHHHHHhCCceEeec
Q psy15783 10 KYAMWMMLQQDTPQDFVIA-----TGET----HSVREFVEAAFLYIGKTIVWEG 54 (86)
Q Consensus 10 v~a~~~ll~~~~pgdYnI~-----SG~~----~SV~d~l~~~~~~~g~~i~w~g 54 (86)
......++++-.+..++|| .|.. ..+++|++.+.+..++++.+-.
T Consensus 43 ~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~D 96 (138)
T PRK00109 43 WDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVD 96 (138)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 4555666667678779999 5655 5688999999888888876433
No 92
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=45.95 E-value=33 Score=23.22 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=19.7
Q ss_pred cccHHHHHHHHHHHhcCCC---CCc-EEEecC
Q psy15783 3 ILNLNLSKYAMWMMLQQDT---PQD-FVIATG 30 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~~---pgd-YnI~SG 30 (86)
.++.++++++++.+++... .|. ||++.|
T Consensus 206 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 206 FGTPEEVANAVAFLASDEASYITGQVIHVDGG 237 (239)
T ss_pred CcCHHHHHHHHHHHhCcccCCcCCCEEEeCCC
Confidence 4567788888888885532 356 888766
No 93
>PRK06180 short chain dehydrogenase; Provisional
Probab=44.69 E-value=34 Score=24.38 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHH
Q psy15783 3 ILNLNLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAF 43 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~ 43 (86)
++.+.++++++..++..+.|.. |.++.-....+++-++.+.
T Consensus 221 ~~~~~dva~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 262 (277)
T PRK06180 221 PGDPAKAAQAILAAVESDEPPLHLLLGSDALRLVRAKLAALD 262 (277)
T ss_pred CCCHHHHHHHHHHHHcCCCCCeeEeccHHHHHHHHHHHHHHH
Confidence 4677889999999999888877 7666555555554443333
No 94
>PRK13515 carboxylate-amine ligase; Provisional
Probab=44.63 E-value=47 Score=25.67 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHh
Q psy15783 9 SKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYI 46 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~ 46 (86)
+-+++|.+...+-.+. +...+|+..+++|+++.++..+
T Consensus 275 ~~~n~w~Aar~Glda~~~~~~~~~~~~~~~~~~~ll~~~ 313 (371)
T PRK13515 275 IEENKWRAQRYGLDGKLIDFGKQEEVPARELLEELLEFV 313 (371)
T ss_pred HHHHHHHHHhhCCCceeecCCCCcEEEHHHHHHHHHHHH
Confidence 5678899999988888 6678999999999999988864
No 95
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=43.55 E-value=19 Score=23.52 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=22.1
Q ss_pred EEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 25 FVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 25 YnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
-.|--.+.+++.|++..+++..|.+
T Consensus 19 ~sv~V~~~tt~~dvv~eaL~kfGl~ 43 (97)
T cd01783 19 VSIRVNKDTTVQDVILEVLPLFGLQ 43 (97)
T ss_pred EEEEecccchHHHHHHHHHHHhCcc
Confidence 4677788999999999999999986
No 96
>PRK06182 short chain dehydrogenase; Validated
Probab=42.50 E-value=31 Score=24.40 Aligned_cols=30 Identities=10% Similarity=0.238 Sum_probs=23.4
Q ss_pred cccHHHHHHHHHHHhcCCCCCc-EEEecCce
Q psy15783 3 ILNLNLSKYAMWMMLQQDTPQD-FVIATGET 32 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~~pgd-YnI~SG~~ 32 (86)
.+...+++++++.++.+..|.. |+++++-.
T Consensus 220 ~~~~~~vA~~i~~~~~~~~~~~~~~~g~~~~ 250 (273)
T PRK06182 220 LSDPSVIADAISKAVTARRPKTRYAVGFGAK 250 (273)
T ss_pred CCCHHHHHHHHHHHHhCCCCCceeecCcchH
Confidence 4577889999999998877665 88877643
No 97
>PF00727 IL4: Interleukin 4 This family is a subset of the SCOP family; InterPro: IPR002354 Cytokines are protein messengers that carry information from cell to cell []. Interleukin is one such molecule, and participates in several B-cell activation processes: e.g., it enhances production and secretion of IgG1 and IgE []; it induces expression of class II major histocompatability complex (MHC) molecules on resting B-cells; and it regulates expression of the low affinity Fc receptor for IgE on lymphocytes and monocytes. Interleukin-4 (IL4) has a compact, globular fold (similar to other cytokines), stabilised by 3 disulphide bonds []. One half of the structure is dominated by a 4 alpha-helix bundle with a left-handed twist []. The helices are anti-parallel, with 2 overhand connections, which fall into a 2-stranded anti-parallel beta-sheet [].; GO: 0005136 interleukin-4 receptor binding, 0008083 growth factor activity, 0006955 immune response, 0005576 extracellular region; PDB: 1HIK_A 1HZI_A 1ITI_A 2INT_A 1RCB_A 1CYL_A 3QB7_A 1BBN_A 2B8Z_A 1ITM_A ....
Probab=42.40 E-value=75 Score=21.47 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHHHh
Q psy15783 5 NLNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYI 46 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~~ 46 (86)
+++-..+++..|..+. .--+..++..+++||++.+-...
T Consensus 74 ~L~~L~Rnl~sl~~~~---~C~Vne~~~ttLkdFLe~Lk~im 112 (117)
T PF00727_consen 74 DLRGLDRNLSSLANQT---NCPVNEAKQTTLKDFLERLKTIM 112 (117)
T ss_dssp HHHHHHHHHHHHHTSS--------SSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC---CCCCCccchhhHHHHHHHHHHHH
Confidence 3445677777777662 24488999999999999886544
No 98
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=42.33 E-value=62 Score=20.92 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHH--HhCCce
Q psy15783 6 LNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFL--YIGKTI 50 (86)
Q Consensus 6 ~~~~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~--~~g~~i 50 (86)
+.-+++++-++.++ .++.++|.||.+ ||+..+-. ..|..+
T Consensus 85 ~~l~~d~~~~~~~~-~~d~ivLvSgD~----Df~~~i~~lr~~G~~V 126 (149)
T cd06167 85 VALAIDALELAYKR-RIDTIVLVSGDS----DFVPLVERLRELGKRV 126 (149)
T ss_pred HHHHHHHHHHhhhc-CCCEEEEEECCc----cHHHHHHHHHHcCCEE
Confidence 34467777666665 666699999988 66655533 236654
No 99
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=42.05 E-value=13 Score=32.05 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=16.4
Q ss_pred ecCceeeHHHHHHHHHHHh
Q psy15783 28 ATGETHSVREFVEAAFLYI 46 (86)
Q Consensus 28 ~SG~~~SV~d~l~~~~~~~ 46 (86)
+|||+..++++++.+.+.-
T Consensus 195 GSGKS~~i~~LL~~ir~RG 213 (732)
T PRK13700 195 GAGKSEVIRRLANYARQRG 213 (732)
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 7999999999999888743
No 100
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=41.43 E-value=34 Score=24.14 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCCCCc-EEEecCceee
Q psy15783 9 SKYAMWMMLQQDTPQD-FVIATGETHS 34 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgd-YnI~SG~~~S 34 (86)
..+|+..+.++ |- +.|||||+++
T Consensus 25 ~~~ai~~~~~~---G~~~~iaTGR~~~ 48 (272)
T PRK10530 25 SLEALARAREA---GYKVIIVTGRHHV 48 (272)
T ss_pred HHHHHHHHHHC---CCEEEEEcCCChH
Confidence 45666666655 44 9999999875
No 101
>PRK11113 D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional
Probab=41.03 E-value=58 Score=26.31 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=31.3
Q ss_pred CCc-EEEecCceeeHHHHHHHHH---HHhCCceEeecCcccccceeccCCcEEEEEcCCCcCCC
Q psy15783 22 PQD-FVIATGETHSVREFVEAAF---LYIGKTIVWEGTGKDEVGKEKDTGIVRVKVNENYFRPT 81 (86)
Q Consensus 22 pgd-YnI~SG~~~SV~d~l~~~~---~~~g~~i~w~g~~~~e~~~~~~~~~~~v~iDp~~~RP~ 81 (86)
.|+ |+.++|.+.=..+.++.++ +..|+. ..+| .|.+|.++|...
T Consensus 98 ~GdL~i~G~GDPtL~~~~L~~la~~l~~~GI~-~I~G---------------~lv~D~s~f~~~ 145 (477)
T PRK11113 98 KGDLIARFGGDPTLTRQDLRNMVATLKKSGVK-QIDG---------------NLLIDTSVFASH 145 (477)
T ss_pred eeeEEEEEecCCCCCHHHHHHHHHHHHHcCCc-EEee---------------eEEEECccccCc
Confidence 478 9999999987766666665 455775 3344 678888888653
No 102
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.40 E-value=47 Score=22.42 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHhcCCC---CCc-EEEecCcee
Q psy15783 5 NLNLSKYAMWMMLQQDT---PQD-FVIATGETH 33 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~---pgd-YnI~SG~~~ 33 (86)
..+++++++..+++++. .|. |+|++|...
T Consensus 216 ~~~dva~~~~~~~~~~~~~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 216 TPEDIARAVAFLCSDASDYITGQVIEVTGGVDV 248 (249)
T ss_pred CHHHHHHHHHHHhCccccCcCCCEEEeCCCEee
Confidence 46788888888886642 578 999988654
No 103
>PRK11538 ribosome-associated protein; Provisional
Probab=39.93 E-value=49 Score=21.53 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=24.0
Q ss_pred CCc-EEEecCceee----HHHHHHHHHHHhCCceEeecCcccccce
Q psy15783 22 PQD-FVIATGETHS----VREFVEAAFLYIGKTIVWEGTGKDEVGK 62 (86)
Q Consensus 22 pgd-YnI~SG~~~S----V~d~l~~~~~~~g~~i~w~g~~~~e~~~ 62 (86)
.-| |+||||.+.. +.+.+...++..|.. ..+-+|.++.++
T Consensus 33 ~~Dy~VIatg~S~rh~~aia~~v~~~~k~~~~~-~~~~eG~~~~~W 77 (105)
T PRK11538 33 ITDCMIICTGTSSRHVMSIADHVVQESRAAGLL-PLGVEGENAADW 77 (105)
T ss_pred ccCEEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CCcccCCCCCCE
Confidence 347 9999998753 455555555666664 233445555554
No 104
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=39.32 E-value=43 Score=23.81 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCCCc-EEEecCceee
Q psy15783 9 SKYAMWMMLQQDTPQD-FVIATGETHS 34 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgd-YnI~SG~~~S 34 (86)
..+|+..+.++ |- ++|||||+++
T Consensus 25 ~~~ai~~l~~~---G~~~~iaTGR~~~ 48 (270)
T PRK10513 25 VKQAIAAARAK---GVNVVLTTGRPYA 48 (270)
T ss_pred HHHHHHHHHHC---CCEEEEecCCChH
Confidence 45666665554 44 9999999987
No 105
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=39.23 E-value=44 Score=23.21 Aligned_cols=29 Identities=7% Similarity=0.181 Sum_probs=21.2
Q ss_pred cccHHHHHHHHHHHhcCC---CCCc-EEEecCc
Q psy15783 3 ILNLNLSKYAMWMMLQQD---TPQD-FVIATGE 31 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~---~pgd-YnI~SG~ 31 (86)
.|+..++++++..|+... ..|. |++.+|+
T Consensus 226 ~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~ 258 (260)
T PRK12823 226 YGTIDEQVAAILFLASDEASYITGTVLPVGGGD 258 (260)
T ss_pred CCCHHHHHHHHHHHcCcccccccCcEEeecCCC
Confidence 567788888888887544 2576 8888775
No 106
>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.
Probab=39.17 E-value=45 Score=21.09 Aligned_cols=41 Identities=32% Similarity=0.378 Sum_probs=21.7
Q ss_pred CCCc-EEEecCce----eeHHHHHHHHH-HHhCCceEeecCcccccce
Q psy15783 21 TPQD-FVIATGET----HSVREFVEAAF-LYIGKTIVWEGTGKDEVGK 62 (86)
Q Consensus 21 ~pgd-YnI~SG~~----~SV~d~l~~~~-~~~g~~i~w~g~~~~e~~~ 62 (86)
.+.| ++||||++ .++.+.+...+ +..|.. ...-+|.++.++
T Consensus 27 ~~~dy~II~T~~S~rh~~aia~~v~~~~~k~~~~~-~~~~eG~~~~~W 73 (100)
T PF02410_consen 27 SWADYFIIATGRSERHVRAIADEVEKALKKEYGER-PLRIEGLDESDW 73 (100)
T ss_dssp SS-SEEEEEEESSHHHHHHHHHHHHHHH-HHTT-----EEESTTTTSE
T ss_pred cccCEEEEEEcCCHHHHHHHHHHHHHHHHHHcCCc-ccccCCCCCCCE
Confidence 3568 99999987 34555555556 444533 233334444444
No 107
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=38.46 E-value=47 Score=23.12 Aligned_cols=31 Identities=6% Similarity=-0.015 Sum_probs=20.1
Q ss_pred cccHHHHHHHHHHHhcCCC---CCc-EEEecCcee
Q psy15783 3 ILNLNLSKYAMWMMLQQDT---PQD-FVIATGETH 33 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~~---pgd-YnI~SG~~~ 33 (86)
++...+++++...++.... .|. |+++.|+..
T Consensus 222 ~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~~~ 256 (257)
T PRK07067 222 MGVPDDLTGMALFLASADADYIVAQTYNVDGGNWM 256 (257)
T ss_pred ccCHHHHHHHHHHHhCcccccccCcEEeecCCEeC
Confidence 4556677777777775432 466 888877543
No 108
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=38.35 E-value=49 Score=22.62 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=12.7
Q ss_pred CCc-EEEecCceee-HHHHH
Q psy15783 22 PQD-FVIATGETHS-VREFV 39 (86)
Q Consensus 22 pgd-YnI~SG~~~S-V~d~l 39 (86)
.|- +++||||+++ +++++
T Consensus 30 ~Gi~~~~aTGR~~~~~~~~~ 49 (225)
T TIGR01482 30 VGIPVVLVTGNSVQFARALA 49 (225)
T ss_pred CCCEEEEEcCCchHHHHHHH
Confidence 455 9999999984 44443
No 109
>KOG1430|consensus
Probab=38.28 E-value=80 Score=24.98 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=35.9
Q ss_pred cccHHH-HHHHHHHHh-cCCC-CCc-EEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 3 ILNLNL-SKYAMWMML-QQDT-PQD-FVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 3 ~gn~~~-~v~a~~~ll-~~~~-pgd-YnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
.+||.. -+-|...|. +... .|. |.|+.|.++.--+|...+++..|+..
T Consensus 220 ~~Nva~ahilA~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~ 271 (361)
T KOG1430|consen 220 GENVAWAHILAARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCL 271 (361)
T ss_pred echhHHHHHHHHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCC
Confidence 345554 255555555 4444 577 99999999999999999999999876
No 110
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=36.93 E-value=44 Score=28.23 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCCCcEEE----ecCceeeHHHHHHHHHHHhCC
Q psy15783 9 SKYAMWMMLQQDTPQDFVI----ATGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgdYnI----~SG~~~SV~d~l~~~~~~~g~ 48 (86)
+-+||..|.....+.-.+| ||||+.+-+-++..+...++.
T Consensus 79 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~ 122 (677)
T smart00242 79 ADNAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGS 122 (677)
T ss_pred HHHHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCC
Confidence 4678999998877777888 999999999999988877754
No 111
>PRK07041 short chain dehydrogenase; Provisional
Probab=36.68 E-value=61 Score=22.01 Aligned_cols=30 Identities=7% Similarity=0.089 Sum_probs=20.3
Q ss_pred cccHHHHHHHHHHHhcCCC-CCc-EEEecCce
Q psy15783 3 ILNLNLSKYAMWMMLQQDT-PQD-FVIATGET 32 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~~-pgd-YnI~SG~~ 32 (86)
.+...+++++++.|+.... .|. |++..|++
T Consensus 197 ~~~~~dva~~~~~l~~~~~~~G~~~~v~gg~~ 228 (230)
T PRK07041 197 VGQPEDVANAILFLAANGFTTGSTVLVDGGHA 228 (230)
T ss_pred CcCHHHHHHHHHHHhcCCCcCCcEEEeCCCee
Confidence 3556778888888886542 366 78777754
No 112
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=36.66 E-value=45 Score=28.28 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCCCcEEE----ecCceeeHHHHHHHHHHHhCC
Q psy15783 9 SKYAMWMMLQQDTPQDFVI----ATGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgdYnI----~SG~~~SV~d~l~~~~~~~g~ 48 (86)
+-+||..|.+.+.+.-.+| +|||+.+-+-++..+...++.
T Consensus 75 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~ 118 (674)
T cd01384 75 ADAAYRAMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGR 118 (674)
T ss_pred HHHHHHHHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCC
Confidence 4578889988877766888 999999999999988877653
No 113
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=36.65 E-value=51 Score=22.70 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCCCCc-EEEecCceee
Q psy15783 9 SKYAMWMMLQQDTPQD-FVIATGETHS 34 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgd-YnI~SG~~~S 34 (86)
..+|+..+-+ .|- ++|||||+.+
T Consensus 25 ~~~al~~l~~---~G~~~~iaTGR~~~ 48 (230)
T PRK01158 25 AVEAIRKAEK---LGIPVILATGNVLC 48 (230)
T ss_pred HHHHHHHHHH---CCCEEEEEcCCchH
Confidence 4556555443 454 9999999976
No 114
>PRK10976 putative hydrolase; Provisional
Probab=36.27 E-value=61 Score=22.97 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCCCCc-EEEecCceee
Q psy15783 9 SKYAMWMMLQQDTPQD-FVIATGETHS 34 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgd-YnI~SG~~~S 34 (86)
..+|+..+.++ |- ++|||||+++
T Consensus 24 ~~~ai~~l~~~---G~~~~iaTGR~~~ 47 (266)
T PRK10976 24 AKETLKLLTAR---GIHFVFATGRHHV 47 (266)
T ss_pred HHHHHHHHHHC---CCEEEEEcCCChH
Confidence 45666665544 55 9999999876
No 115
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=35.36 E-value=82 Score=21.98 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCCCCc-EEEecCce-eeHHHHHHHHHHHhCCceEeecCcccccceeccCCcEEEEEcCCCcCCCC
Q psy15783 6 LNLSKYAMWMMLQQDTPQD-FVIATGET-HSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRVKVNENYFRPTE 82 (86)
Q Consensus 6 ~~~~v~a~~~ll~~~~pgd-YnI~SG~~-~SV~d~l~~~~~~~g~~i~w~g~~~~e~~~~~~~~~~~v~iDp~~~RP~d 82 (86)
+..+-.|.-.+.+.-.++. +++-|=-+ -+.++++..+++..+... ....+-..|.|+||..
T Consensus 96 ls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~----------------~~f~la~~PErl~~G~ 158 (185)
T PF03721_consen 96 LSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKK----------------EDFHLAYSPERLREGR 158 (185)
T ss_dssp THHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTT----------------TCEEEEE------TTS
T ss_pred HHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccc----------------cCCeEEECCCccCCCC
Confidence 3344555555555556677 77765444 455558888887766310 1127899999999853
No 116
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=34.60 E-value=38 Score=22.80 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 9 SKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
..+|+-.+.++ |- +.+||||+++- +..+++..+.+
T Consensus 20 ~~~al~~l~~~---g~~~~i~TGR~~~~---~~~~~~~~~~~ 55 (254)
T PF08282_consen 20 TIEALKELQEK---GIKLVIATGRSYSS---IKRLLKELGID 55 (254)
T ss_dssp HHHHHHHHHHT---TCEEEEECSSTHHH---HHHHHHHTTHC
T ss_pred HHHHHHhhccc---ceEEEEEccCcccc---cccccccccch
Confidence 46666666654 55 99999998752 44555555543
No 117
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=34.11 E-value=48 Score=23.75 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCCCCc-EEEecCceee
Q psy15783 9 SKYAMWMMLQQDTPQD-FVIATGETHS 34 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgd-YnI~SG~~~S 34 (86)
..+|+..+.++ |- ++|||||++.
T Consensus 24 ~~~ai~~l~~~---G~~~~iaTGR~~~ 47 (272)
T PRK15126 24 TLSTLARLRER---DITLTFATGRHVL 47 (272)
T ss_pred HHHHHHHHHHC---CCEEEEECCCCHH
Confidence 45666666554 45 9999999875
No 118
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=34.03 E-value=31 Score=20.40 Aligned_cols=19 Identities=21% Similarity=0.657 Sum_probs=15.5
Q ss_pred cCCCCCcEEEecCceeeHH
Q psy15783 18 QQDTPQDFVIATGETHSVR 36 (86)
Q Consensus 18 ~~~~pgdYnI~SG~~~SV~ 36 (86)
..+.++||.+..|.++.++
T Consensus 31 ~~g~~~D~~L~~G~~l~l~ 49 (63)
T PF11142_consen 31 REGDPDDYWLQAGDSLRLR 49 (63)
T ss_pred CCCCCCCEEECCCCEEEeC
Confidence 4556888999999999874
No 119
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=33.98 E-value=70 Score=18.43 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=12.9
Q ss_pred eHHHHHHHHHHHhCCce
Q psy15783 34 SVREFVEAAFLYIGKTI 50 (86)
Q Consensus 34 SV~d~l~~~~~~~g~~i 50 (86)
.++++|+.-.+..|+.+
T Consensus 3 ~~~~~L~yka~~~G~~v 19 (69)
T PF07282_consen 3 QFRQRLEYKAEEYGIQV 19 (69)
T ss_pred HHHHHHHHHHHHhCCEE
Confidence 46777888888888874
No 120
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=33.84 E-value=72 Score=22.30 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=25.6
Q ss_pred HhcCCCCCcEEEecCceeeHHHHHHHHHHHh
Q psy15783 16 MLQQDTPQDFVIATGETHSVREFVEAAFLYI 46 (86)
Q Consensus 16 ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~~ 46 (86)
|++...|.+.-+-||-++|-++|.+....++
T Consensus 103 Lve~q~p~~VdvVsGATvSs~~F~~~~~~ll 133 (147)
T COG4939 103 LVEVQDPNEVDVVSGATVSSKEFKEAVWNLL 133 (147)
T ss_pred HHhcCCccceeeeeccccchHHHHHHHHHHH
Confidence 4566678888899999999999999887654
No 121
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=33.77 E-value=97 Score=22.10 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=27.9
Q ss_pred CccccHHHH--------HHHHHHHhcCCCCC-cEEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 1 MTILNLNLS--------KYAMWMMLQQDTPQ-DFVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 1 ~~~gn~~~~--------v~a~~~ll~~~~pg-dYnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
++|||+-.. ..++..+|.. .| +|+++|+.. =+..+|..+|++.
T Consensus 88 vEvGnLAs~~~g~~~~l~~~l~~~L~~--~g~~w~vfTaT~-----~lr~~~~rlgl~~ 139 (179)
T PF12261_consen 88 VEVGNLASFSPGAARLLFAALAQLLAQ--QGFEWVVFTATR-----QLRNLFRRLGLPP 139 (179)
T ss_pred eEeechhhcCcccHHHHHHHHHHHHHH--CCCCEEEEeCCH-----HHHHHHHHcCCCc
Confidence 578999872 3333333322 34 599999974 4667778888875
No 122
>smart00197 SAA Serum amyloid A proteins. Serum amyloid A proteins are induced during the acute-phase response. Secondary amyloidosis is characterised by the extracellular accumulation in tissues of SAA proteins. SAA proteins are apolipoproteins.
Probab=33.77 E-value=24 Score=23.39 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=10.6
Q ss_pred cCCCcCCCCCCC
Q psy15783 74 NENYFRPTEVIG 85 (86)
Q Consensus 74 Dp~~~RP~dv~~ 85 (86)
||+.|||...|.
T Consensus 90 dpn~frp~glp~ 101 (103)
T smart00197 90 DPNRFRPPGLPE 101 (103)
T ss_pred CCCccCCCCCCC
Confidence 799999998874
No 123
>KOG1803|consensus
Probab=33.47 E-value=28 Score=29.74 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=16.7
Q ss_pred ecCceeeHHHHHHHHHHHh
Q psy15783 28 ATGETHSVREFVEAAFLYI 46 (86)
Q Consensus 28 ~SG~~~SV~d~l~~~~~~~ 46 (86)
|||+++++-|++.++.+.-
T Consensus 211 GTGKT~TlvEiI~qlvk~~ 229 (649)
T KOG1803|consen 211 GTGKTRTLVEIISQLVKQK 229 (649)
T ss_pred CCCceeeHHHHHHHHHHcC
Confidence 6999999999999998753
No 124
>PRK10347 cell filamentation protein Fic; Provisional
Probab=33.36 E-value=25 Score=25.47 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=22.8
Q ss_pred cCceeeHHHHHHHHHHHhCCceEeec
Q psy15783 29 TGETHSVREFVEAAFLYIGKTIVWEG 54 (86)
Q Consensus 29 SG~~~SV~d~l~~~~~~~g~~i~w~g 54 (86)
=|.+.|.|-|+++++..+|..++|..
T Consensus 139 EGNGRt~r~f~~~la~~aG~~idw~~ 164 (200)
T PRK10347 139 VGSGLAQRIFFEQLAIHAGYQLSWQG 164 (200)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCccc
Confidence 47778889999999999999999965
No 125
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=33.12 E-value=88 Score=21.18 Aligned_cols=34 Identities=3% Similarity=-0.129 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHH
Q psy15783 9 SKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLY 45 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~ 45 (86)
++++|..+.++ |- +.++||++....+.+...+..
T Consensus 32 ~~~a~~~l~~~---G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 32 VAKLYRDIQNN---GYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred HHHHHHHHHHc---CCeEEEEcCCcHHHHHHHHHHHHH
Confidence 56666666655 44 999999999887544444443
No 126
>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]
Probab=32.93 E-value=90 Score=20.92 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=23.1
Q ss_pred CCc-EEEecCceee----HHHHHHHHHHHhCCceEeecCcccccce
Q psy15783 22 PQD-FVIATGETHS----VREFVEAAFLYIGKTIVWEGTGKDEVGK 62 (86)
Q Consensus 22 pgd-YnI~SG~~~S----V~d~l~~~~~~~g~~i~w~g~~~~e~~~ 62 (86)
..| |+||||.+.. +.+=+...++..|.. .-+-||..+..+
T Consensus 33 ~tDyfVIatg~s~rhv~Aiad~i~~~~k~~g~~-~~~~EG~~~~~W 77 (115)
T COG0799 33 LTDYFVIATGNSSRHVKAIADNVKEELKEAGEV-PLRIEGLSEGEW 77 (115)
T ss_pred cccEEEEEEeCchHHHHHHHHHHHHHHHHcCCC-cccccCCCcCCE
Confidence 457 9999998863 334344444555654 234445555555
No 127
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=32.88 E-value=73 Score=19.91 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHhcCCCCCc---EEEecCcee
Q psy15783 5 NLNLSKYAMWMMLQQDTPQD---FVIATGETH 33 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgd---YnI~SG~~~ 33 (86)
.++.++++....++.+.||| |+.--.+.+
T Consensus 66 ~v~~iv~~I~~~~~tg~~GdGkIfV~~V~~ai 97 (102)
T PF00543_consen 66 DVEEIVEAISEAARTGEPGDGKIFVSPVEDAI 97 (102)
T ss_dssp GHHHHHHHHHHHH-SSSTTSEEEEEEEESEEE
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEEEhheEE
Confidence 46779999999999999987 554433333
No 128
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=32.87 E-value=60 Score=23.40 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCC
Q psy15783 9 SKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~ 48 (86)
..+|+..+.++ |- ++|||||++. + +...++..|.
T Consensus 29 ~~~ai~~l~~~---Gi~~viaTGR~~~--~-i~~~~~~l~~ 63 (271)
T PRK03669 29 AAPWLTRLREA---QVPVILCSSKTAA--E-MLPLQQTLGL 63 (271)
T ss_pred HHHHHHHHHHc---CCeEEEEcCCCHH--H-HHHHHHHhCC
Confidence 45665555544 54 9999999964 2 3334455554
No 129
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=32.35 E-value=1.3e+02 Score=19.00 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=40.1
Q ss_pred CCc-EEEecCceeeHHHHHHHHHHHhCCceEeecCcccccceeccCCcEEEEEcCCC
Q psy15783 22 PQD-FVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRVKVNENY 77 (86)
Q Consensus 22 pgd-YnI~SG~~~SV~d~l~~~~~~~g~~i~w~g~~~~e~~~~~~~~~~~v~iDp~~ 77 (86)
.|. .-+...-+.|+.++.+.+.+..|.+. ...++.+=.++|++...+.+..|..+
T Consensus 9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~-~~~~~~~L~YlDDEgD~VllT~D~DL 64 (86)
T cd06409 9 KGRVHRFRLRPSESLEELRTLISQRLGDDD-FETHLYALSYVDDEGDIVLITSDSDL 64 (86)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCcc-ccCCcccEEEEcCCCCEEEEeccchH
Confidence 455 55555557899999999999999874 22345666677788888888888543
No 130
>PRK10444 UMP phosphatase; Provisional
Probab=31.66 E-value=1e+02 Score=22.49 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCCCcEEEecCcee-eHHHHHHHHHHHhCCce
Q psy15783 9 SKYAMWMMLQQDTPQDFVIATGETH-SVREFVEAAFLYIGKTI 50 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgdYnI~SG~~~-SV~d~l~~~~~~~g~~i 50 (86)
+++++-.+.+++.| +.+.||++. +.+++.+.+ +..|+++
T Consensus 22 a~~~l~~L~~~g~~--~~~~Tn~~~~~~~~~~~~l-~~~G~~~ 61 (248)
T PRK10444 22 AAEFLHRILDKGLP--LVLLTNYPSQTGQDLANRF-ATAGVDV 61 (248)
T ss_pred HHHHHHHHHHCCCe--EEEEeCCCCCCHHHHHHHH-HHcCCCC
Confidence 34555555544332 999999998 677877776 5578765
No 131
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=31.49 E-value=77 Score=21.56 Aligned_cols=30 Identities=10% Similarity=0.116 Sum_probs=20.6
Q ss_pred cccHHHHHHHHHHHhcCC---CCCc-EEEecCce
Q psy15783 3 ILNLNLSKYAMWMMLQQD---TPQD-FVIATGET 32 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~---~pgd-YnI~SG~~ 32 (86)
+.++.+++.+++.++... ..|+ |++++|..
T Consensus 215 ~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~ 248 (251)
T PRK12826 215 LGEPEDIAAAVLFLASDEARYITGQTLPVDGGAT 248 (251)
T ss_pred CcCHHHHHHHHHHHhCccccCcCCcEEEECCCcc
Confidence 456778888888877543 2577 77777653
No 132
>PF04029 2-ph_phosp: 2-phosphosulpholactate phosphatase; InterPro: IPR005238 2-phosphosulpholactate phosphatase (ComB; 3.1.3.71 from EC) is a magnesium-dependent acid phosphatase that catalyzes the second step in coenzyme M (CoM; 2-mercaptoethanesulphonic acid) biosynthesis, namely, the hydrolysis of (2R)-2-phospho-3-sulpholactate to yield (2R)-3-sulpholactate and phosphate. CoM is an essential cofactor that acts as the terminal methyl carrier in methanogenesis []. Homologues of ComB have been identified in all available cyanobacterial genome sequences and in genomes from phylogenetically diverse bacteria and archaea. However, many of these organisms lack homologues of other CoM biosynthetic genes. ComB has a complex alpha/beta topology. The monomer is composed of two domains thought to be related by a common ancestral gene, plus a C-terminal helical and beta-hairpin region []. ; GO: 0000287 magnesium ion binding, 0050532 2-phosphosulfolactate phosphatase activity, 0019295 coenzyme M biosynthetic process; PDB: 2YZO_B 2YYV_A 3HKZ_G 1VR0_C 2Z0J_G.
Probab=31.44 E-value=83 Score=23.12 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHHHhcCCCCCc-EEEecCce--eeHHHHHH
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQD-FVIATGET--HSVREFVE 40 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pgd-YnI~SG~~--~SV~d~l~ 40 (86)
-|..++++..... .+.+ .+||+|.. .++.|++-
T Consensus 119 ~Na~Ava~~~~~~----~~~~v~iV~AG~~g~~a~ED~l~ 154 (233)
T PF04029_consen 119 LNASAVARYLRRL----APEDVTIVCAGTRGRFALEDFLC 154 (233)
T ss_dssp TTHHHHHHHHHHH----TTSEEEEEEESBTTB--HHHHHH
T ss_pred hhHHHHHHHHHHh----CCCCEEEEeCCCCCCCCHHHHHH
Confidence 4666777766655 5567 99999976 68888753
No 133
>COG2184 Fic Protein involved in cell division [Cell division and chromosome partitioning]
Probab=30.35 E-value=34 Score=25.18 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=23.0
Q ss_pred cCceeeHHHHHHHHHHHhCCceEeec
Q psy15783 29 TGETHSVREFVEAAFLYIGKTIVWEG 54 (86)
Q Consensus 29 SG~~~SV~d~l~~~~~~~g~~i~w~g 54 (86)
-|...|.|.|++++++..|..++|..
T Consensus 134 eGNGRs~rif~d~ll~~~g~~idW~~ 159 (201)
T COG2184 134 EGNGRSTRIFLDLLLKELGKAIDWQS 159 (201)
T ss_pred CCCcHHHHHHHHHHHHHhCcccCCcc
Confidence 57778899999999998899999966
No 134
>PRK07775 short chain dehydrogenase; Provisional
Probab=30.31 E-value=76 Score=22.53 Aligned_cols=25 Identities=8% Similarity=-0.012 Sum_probs=16.0
Q ss_pred ccHHHHHHHHHHHhcCCCCCc-EEEe
Q psy15783 4 LNLNLSKYAMWMMLQQDTPQD-FVIA 28 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~pgd-YnI~ 28 (86)
.+++++++|++.+++++.-+. ||+-
T Consensus 224 ~~~~dva~a~~~~~~~~~~~~~~~~~ 249 (274)
T PRK07775 224 LRASDLARAITFVAETPRGAHVVNME 249 (274)
T ss_pred cCHHHHHHHHHHHhcCCCCCCeeEEe
Confidence 466777888777777654344 6654
No 135
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=29.99 E-value=80 Score=26.81 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCCCcEEE----ecCceeeHHHHHHHHHHHh
Q psy15783 9 SKYAMWMMLQQDTPQDFVI----ATGETHSVREFVEAAFLYI 46 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgdYnI----~SG~~~SV~d~l~~~~~~~ 46 (86)
+-+||..|+..+.+.-.+| +|||+.+-+-++..+...+
T Consensus 74 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~ 115 (677)
T cd01387 74 ANLAFAKMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMN 115 (677)
T ss_pred HHHHHHHHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhc
Confidence 4578999998877766888 9999999999999887765
No 136
>PF12846 AAA_10: AAA-like domain
Probab=29.93 E-value=43 Score=23.49 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=15.4
Q ss_pred ecCceeeHHHHHHHHHHHh
Q psy15783 28 ATGETHSVREFVEAAFLYI 46 (86)
Q Consensus 28 ~SG~~~SV~d~l~~~~~~~ 46 (86)
+|||++.++.++..++..-
T Consensus 11 GsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 11 GSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCcHHHHHHHHHHHHHHcC
Confidence 6899999998887776654
No 137
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=29.86 E-value=60 Score=27.34 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCCCcEEE----ecCceeeHHHHHHHHHHHhCC
Q psy15783 9 SKYAMWMMLQQDTPQDFVI----ATGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgdYnI----~SG~~~SV~d~l~~~~~~~g~ 48 (86)
+-+||..|.+...+...+| ||||+.+-+-++..+...++.
T Consensus 73 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~ 116 (679)
T cd00124 73 ADRAYRNMLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGS 116 (679)
T ss_pred HHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCC
Confidence 4678888888877766888 899999999999998877653
No 138
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=29.65 E-value=45 Score=23.38 Aligned_cols=15 Identities=33% Similarity=0.333 Sum_probs=11.5
Q ss_pred CCCCc-EEEecCceee
Q psy15783 20 DTPQD-FVIATGETHS 34 (86)
Q Consensus 20 ~~pgd-YnI~SG~~~S 34 (86)
...|- |++||||+++
T Consensus 27 ~~~gi~~viaTGR~~~ 42 (236)
T TIGR02471 27 SGDAVGFGIATGRSVE 42 (236)
T ss_pred cCCCceEEEEeCCCHH
Confidence 34466 9999999874
No 139
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam model pfam01385, and other proteins.
Probab=28.13 E-value=1e+02 Score=18.14 Aligned_cols=16 Identities=6% Similarity=-0.060 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhCCce
Q psy15783 35 VREFVEAAFLYIGKTI 50 (86)
Q Consensus 35 V~d~l~~~~~~~g~~i 50 (86)
++++++...+..|+.+
T Consensus 58 ~~~~l~yka~~~Gi~v 73 (82)
T TIGR01766 58 LISKIKYKAEEYGIEV 73 (82)
T ss_pred HHHHHHHHHHHcCCeE
Confidence 4555555556667764
No 140
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=28.06 E-value=1.5e+02 Score=22.80 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=28.9
Q ss_pred CCc-EEEecCceeeHHHHHHHHHH---HhCCceEeecCcccccceeccCCcEEEEEcCCCcCCC
Q psy15783 22 PQD-FVIATGETHSVREFVEAAFL---YIGKTIVWEGTGKDEVGKEKDTGIVRVKVNENYFRPT 81 (86)
Q Consensus 22 pgd-YnI~SG~~~SV~d~l~~~~~---~~g~~i~w~g~~~~e~~~~~~~~~~~v~iDp~~~RP~ 81 (86)
.|+ |..++|.+.=..+-+..+.+ ..|+. ...| .|.+|.++|...
T Consensus 54 ~G~L~i~G~GDP~L~~~~L~~la~~l~~~Gi~-~i~G---------------~v~~D~s~f~~~ 101 (345)
T TIGR00666 54 KGNLVLRFGGDPTLKRQDIRNLVATLKKSGVK-QIDG---------------NVLVDTSAFSSH 101 (345)
T ss_pred cccEEEEeecCCCcCHHHHHHHHHHHHHcCCc-EEEe---------------eEEEEcccccCC
Confidence 589 99999998755554544443 35664 2233 488898888753
No 141
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=27.75 E-value=1.7e+02 Score=20.57 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHH--HHhCCce
Q psy15783 6 LNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAF--LYIGKTI 50 (86)
Q Consensus 6 ~~~~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~--~~~g~~i 50 (86)
+..+++||-++. .+..+.++|+||.+ ||..++. +..|..+
T Consensus 91 v~laIDame~~~-~~~iD~~vLvSgD~----DF~~Lv~~lre~G~~V 132 (160)
T TIGR00288 91 VRMAVEAMELIY-NPNIDAVALVTRDA----DFLPVINKAKENGKET 132 (160)
T ss_pred HHHHHHHHHHhc-cCCCCEEEEEeccH----hHHHHHHHHHHCCCEE
Confidence 344789987765 34555599999986 8888774 4457765
No 142
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=27.61 E-value=85 Score=22.28 Aligned_cols=34 Identities=24% Similarity=0.163 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 10 KYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 10 v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
.+|+-.+.++ |- +.||||+++ ..+..+++.++.+
T Consensus 26 ~~al~~~~~~---g~~v~iaTGR~~---~~~~~~~~~l~~~ 60 (264)
T COG0561 26 KEALARLREK---GVKVVLATGRPL---PDVLSILEELGLD 60 (264)
T ss_pred HHHHHHHHHC---CCEEEEECCCCh---HHHHHHHHHcCCC
Confidence 4444434333 55 999999998 2333444444443
No 143
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=27.57 E-value=1.3e+02 Score=17.20 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=33.4
Q ss_pred EEEecCceeeHHHHHHHHHHHh-CCceEeecCcccccc---eeccCCcEEEEEcCCCc
Q psy15783 25 FVIATGETHSVREFVEAAFLYI-GKTIVWEGTGKDEVG---KEKDTGIVRVKVNENYF 78 (86)
Q Consensus 25 YnI~SG~~~SV~d~l~~~~~~~-g~~i~w~g~~~~e~~---~~~~~~~~~v~iDp~~~ 78 (86)
|.+|+|.++.+.+.+...+... |.++.+........+ .....+.+.+-+..+..
T Consensus 2 ~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~ 59 (87)
T cd04795 2 FVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGR 59 (87)
T ss_pred EEEEcCHHHHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 6789999999999999888777 887755332221111 11244455555554443
No 144
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=27.41 E-value=85 Score=26.61 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCCCcEEEe----cCceeeHHHHHHHHHHHhCC
Q psy15783 9 SKYAMWMMLQQDTPQDFVIA----TGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgdYnI~----SG~~~SV~d~l~~~~~~~g~ 48 (86)
+-+||..|++.+.+.-.+|+ +||+.+-+-++..+...++.
T Consensus 73 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~ 116 (674)
T cd01378 73 ADNAYRSMKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGG 116 (674)
T ss_pred HHHHHHHHHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCC
Confidence 45789999988877778888 99999999999998887654
No 145
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=27.17 E-value=58 Score=22.43 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 9 SKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
..+|+..+-+ .|- +.||||++++- +..+++..+.+
T Consensus 23 ~~~~i~~l~~---~g~~~~~~TGR~~~~---~~~~~~~l~~~ 58 (215)
T TIGR01487 23 AIEAIRKAEK---KGIPVSLVTGNTVPF---ARALAVLIGTS 58 (215)
T ss_pred HHHHHHHHHH---CCCEEEEEcCCcchh---HHHHHHHhCCC
Confidence 4556555544 455 99999998752 23334445543
No 146
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=27.08 E-value=30 Score=22.58 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=14.2
Q ss_pred eccCCcEEEEEcCCCcCCCCC
Q psy15783 63 EKDTGIVRVKVNENYFRPTEV 83 (86)
Q Consensus 63 ~~~~~~~~v~iDp~~~RP~dv 83 (86)
.+.+|++.|+||++.++...+
T Consensus 55 ~D~TG~I~VeId~~~w~g~~v 75 (103)
T PF04076_consen 55 RDATGEIEVEIDDDVWRGQTV 75 (103)
T ss_dssp EETTEEEEEE--GGGSTT---
T ss_pred ECCCCcEEEEEChhhcCCccc
Confidence 479999999999998887544
No 147
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=26.97 E-value=1.3e+02 Score=20.12 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCCCcEEEecCc---------eeeHHHHHHHHHHHh-CCceEee
Q psy15783 9 SKYAMWMMLQQDTPQDFVIATGE---------THSVREFVEAAFLYI-GKTIVWE 53 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgdYnI~SG~---------~~SV~d~l~~~~~~~-g~~i~w~ 53 (86)
..+....++++-.++.++||-.. +..+++|++.+.+.. ++++.|-
T Consensus 39 ~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~ 93 (135)
T PF03652_consen 39 DIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILV 93 (135)
T ss_dssp CHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 35566677777778778888543 447899999999998 9998643
No 148
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=26.87 E-value=1e+02 Score=17.44 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 6 LNLSKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 6 ~~~~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
+|.+...+|.++.. ++|+.++++.+.+..+.+
T Consensus 15 Ln~~a~~Iw~~~~g------------~~t~~ei~~~l~~~y~~~ 46 (68)
T PF05402_consen 15 LNETAAFIWELLDG------------PRTVEEIVDALAEEYDVD 46 (68)
T ss_dssp --THHHHHHHH--S------------SS-HHHHHHHHHHHTT--
T ss_pred ccHHHHHHHHHccC------------CCCHHHHHHHHHHHcCCC
Confidence 56677778887732 368999999998887664
No 149
>COG3562 KpsS Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=26.70 E-value=2e+02 Score=23.32 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=24.5
Q ss_pred cEEEecCceeeHHHHHHHHHHHhCCce
Q psy15783 24 DFVIATGETHSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 24 dYnI~SG~~~SV~d~l~~~~~~~g~~i 50 (86)
+=.||-|.+.+...+...++...|+++
T Consensus 83 ~aivlfgd~R~yh~iA~~va~k~~i~~ 109 (403)
T COG3562 83 DAIVLFGDTRLYHRIAKTVAIKGGISF 109 (403)
T ss_pred CceEEeccchHHHHHHHHHHHhcCceE
Confidence 457899999999999999999999985
No 150
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=26.49 E-value=1.1e+02 Score=22.08 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHHHhCCceE
Q psy15783 9 SKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIV 51 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~~~g~~i~ 51 (86)
.++|+-.+-+++. .+.++||++..-.+-+..-++..|+++.
T Consensus 26 a~~al~~l~~~G~--~~~~~Tn~~~~~~~~~~~~l~~~g~~~~ 66 (257)
T TIGR01458 26 SQEAVKRLRGASV--KVRFVTNTTKESKQDLLERLQRLGFDIS 66 (257)
T ss_pred HHHHHHHHHHCCC--eEEEEECCCCCCHHHHHHHHHHcCCCCC
Confidence 4566656554432 2999999988765544455566787653
No 151
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=25.58 E-value=2.6e+02 Score=22.39 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=26.5
Q ss_pred Cc-EEEecCceeeHHHHHHHHHH-HhCCceEeec
Q psy15783 23 QD-FVIATGETHSVREFVEAAFL-YIGKTIVWEG 54 (86)
Q Consensus 23 gd-YnI~SG~~~SV~d~l~~~~~-~~g~~i~w~g 54 (86)
-| .+++.|-+..-.||+..+++ ..| ++.++|
T Consensus 243 ~DviItsGG~SvG~~D~v~~~l~~~lG-~v~~~g 275 (404)
T COG0303 243 ADVIITSGGVSVGDADYVKAALERELG-EVLFHG 275 (404)
T ss_pred CCEEEEeCCccCcchHhHHHHHHhcCC-cEEEEe
Confidence 47 88888999999999999999 699 776655
No 152
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=25.38 E-value=3.7e+02 Score=21.80 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHhcCCCCCc-EEEecC-ceeeHHHHHHHHHHH-hCCceEeecCcccccceeccCCcEEEEEcCCCcCCC
Q psy15783 5 NLNLSKYAMWMMLQQDTPQD-FVIATG-ETHSVREFVEAAFLY-IGKTIVWEGTGKDEVGKEKDTGIVRVKVNENYFRPT 81 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgd-YnI~SG-~~~SV~d~l~~~~~~-~g~~i~w~g~~~~e~~~~~~~~~~~v~iDp~~~RP~ 81 (86)
|+..+..|.-.+.+.-.+|. .++-|= -.-+-+.+...+.+. .|.++ .+-.+|.|+||.
T Consensus 102 Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f-------------------~v~~~PErl~~G 162 (473)
T PLN02353 102 DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINF-------------------QILSNPEFLAEG 162 (473)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCe-------------------EEEECCCccCCC
Confidence 34445555555665556777 444443 344445665555553 35555 789999999985
Q ss_pred C
Q psy15783 82 E 82 (86)
Q Consensus 82 d 82 (86)
.
T Consensus 163 ~ 163 (473)
T PLN02353 163 T 163 (473)
T ss_pred C
Confidence 4
No 153
>PRK06128 oxidoreductase; Provisional
Probab=25.28 E-value=99 Score=22.38 Aligned_cols=32 Identities=9% Similarity=-0.023 Sum_probs=22.1
Q ss_pred ccccHHHHHHHHHHHhcCCC---CCc-EEEecCcee
Q psy15783 2 TILNLNLSKYAMWMMLQQDT---PQD-FVIATGETH 33 (86)
Q Consensus 2 ~~gn~~~~v~a~~~ll~~~~---pgd-YnI~SG~~~ 33 (86)
+.|...+++.+++.|+.... .|. |+|+.|...
T Consensus 264 r~~~p~dva~~~~~l~s~~~~~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 264 RPGQPVEMAPLYVLLASQESSYVTGEVFGVTGGLLL 299 (300)
T ss_pred CCcCHHHHHHHHHHHhCccccCccCcEEeeCCCEeC
Confidence 34666778888888876533 467 888888654
No 154
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=25.10 E-value=1e+02 Score=20.78 Aligned_cols=28 Identities=7% Similarity=0.000 Sum_probs=19.4
Q ss_pred ccHHHHHHHHHHHhcCCC---CCc-EEEecCc
Q psy15783 4 LNLNLSKYAMWMMLQQDT---PQD-FVIATGE 31 (86)
Q Consensus 4 gn~~~~v~a~~~ll~~~~---pgd-YnI~SG~ 31 (86)
+...+++++++.++.... .|+ |+++.|.
T Consensus 213 ~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~ 244 (246)
T PRK05653 213 GQPEEVANAVAFLASDAASYITGQVIPVNGGM 244 (246)
T ss_pred cCHHHHHHHHHHHcCchhcCccCCEEEeCCCe
Confidence 455778888888886533 367 8888775
No 155
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=25.05 E-value=89 Score=22.24 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCC
Q psy15783 9 SKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~ 48 (86)
..+|+-.+.++ |- +++||||+.. ++ ...++.+|+
T Consensus 20 ~~~ai~~l~~~---G~~~vi~TgR~~~--~~-~~~~~~lg~ 54 (225)
T TIGR02461 20 AREALEELKDL---GFPIVFVSSKTRA--EQ-EYYREELGV 54 (225)
T ss_pred HHHHHHHHHHC---CCEEEEEeCCCHH--HH-HHHHHHcCC
Confidence 45565555554 44 9999999865 22 223455554
No 156
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=24.27 E-value=1.2e+02 Score=20.86 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCCCCc------EEEecCceeeHHHHHHHHHHHh
Q psy15783 7 NLSKYAMWMMLQQDTPQD------FVIATGETHSVREFVEAAFLYI 46 (86)
Q Consensus 7 ~~~v~a~~~ll~~~~pgd------YnI~SG~~~SV~d~l~~~~~~~ 46 (86)
++|+.|+.-|=+...+|- .|.--|+.-|++|.+..+++..
T Consensus 80 ~aV~~Al~E~nEyN~sGry~v~eLWN~ke~RkAtl~E~v~~i~~q~ 125 (132)
T PF03469_consen 80 NAVTKALLEINEYNPSGRYPVPELWNFKEGRKATLKEVVQYILKQW 125 (132)
T ss_pred HHHHHHHHHHHHhccCCCCCCccCCccccccccCHHHHHHHHHHHH
Confidence 457888888877665553 4555899999999999888743
No 157
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=24.17 E-value=1.5e+02 Score=23.97 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCCCCc--EEEecCce-eeHHHHHHHHHHHhCC
Q psy15783 6 LNLSKYAMWMMLQQDTPQD--FVIATGET-HSVREFVEAAFLYIGK 48 (86)
Q Consensus 6 ~~~~v~a~~~ll~~~~pgd--YnI~SG~~-~SV~d~l~~~~~~~g~ 48 (86)
++-+..||.-|+.+=+||| |-.+--+. +++|=++- .++.+|+
T Consensus 104 ~~nI~~AYrFL~~~yepGD~Iy~FGFSRGAf~aRVlag-mir~vGl 148 (423)
T COG3673 104 VQNIREAYRFLIFNYEPGDEIYAFGFSRGAFSARVLAG-MIRHVGL 148 (423)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEeeccchhHHHHHHHH-HHHHhhh
Confidence 5668999999999999998 77765443 45544433 3344444
No 158
>PRK12744 short chain dehydrogenase; Provisional
Probab=23.85 E-value=1e+02 Score=21.48 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=20.5
Q ss_pred cccHHHHHHHHHHHhcCCC--CCc-EEEecCce
Q psy15783 3 ILNLNLSKYAMWMMLQQDT--PQD-FVIATGET 32 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~~--pgd-YnI~SG~~ 32 (86)
.+...+++.+++.+++... .|. |++.+|..
T Consensus 223 ~~~~~dva~~~~~l~~~~~~~~g~~~~~~gg~~ 255 (257)
T PRK12744 223 LTDIEDIVPFIRFLVTDGWWITGQTILINGGYT 255 (257)
T ss_pred CCCHHHHHHHHHHhhcccceeecceEeecCCcc
Confidence 4566778888888887532 466 77777754
No 159
>PRK14627 hypothetical protein; Provisional
Probab=23.76 E-value=39 Score=21.82 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=15.4
Q ss_pred ccCCcE-EEEEcCCCcCCCCC
Q psy15783 64 KDTGIV-RVKVNENYFRPTEV 83 (86)
Q Consensus 64 ~~~~~~-~v~iDp~~~RP~dv 83 (86)
+.++++ .|+|||+.+.|.|+
T Consensus 43 ~G~~~v~~i~Idp~ll~~ed~ 63 (100)
T PRK14627 43 NGHREVQSITISPEVVDPDDV 63 (100)
T ss_pred EcCccEEEEEECHHHcCcccH
Confidence 445555 89999999998775
No 160
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=23.73 E-value=52 Score=22.40 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=17.4
Q ss_pred eccCCcEEEEEcCCCcCCCCC
Q psy15783 63 EKDTGIVRVKVNENYFRPTEV 83 (86)
Q Consensus 63 ~~~~~~~~v~iDp~~~RP~dv 83 (86)
.+.+|++.|+||++.++...+
T Consensus 78 ~D~TG~I~VeId~~~w~G~~v 98 (126)
T TIGR00156 78 RDKSGEINVVIPAAVWNGREV 98 (126)
T ss_pred ECCCCCEEEEECHHHcCCCcC
Confidence 379999999999999886544
No 161
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=23.73 E-value=1.3e+02 Score=25.59 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCCCcEEEe----cCceeeHHHHHHHHHHHhCC
Q psy15783 9 SKYAMWMMLQQDTPQDFVIA----TGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgdYnI~----SG~~~SV~d~l~~~~~~~g~ 48 (86)
+-+||..|++...+.-.+|+ +||+.+-+-++..+...+|-
T Consensus 73 A~~Ay~~m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~ 116 (671)
T cd01381 73 SDNAYTNMQREKKNQCIIISGESGAGKTESTKLILQYLAAISGK 116 (671)
T ss_pred HHHHHHHHHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCC
Confidence 45788899888777668887 99999999999988877653
No 162
>KOG0025|consensus
Probab=23.33 E-value=2.4e+02 Score=22.53 Aligned_cols=40 Identities=25% Similarity=0.134 Sum_probs=32.8
Q ss_pred HHHHHHHh--cCCCCCcEEEecCceeeHHHHHHHHHHHhCCc
Q psy15783 10 KYAMWMML--QQDTPQDFVIATGETHSVREFVEAAFLYIGKT 49 (86)
Q Consensus 10 v~a~~~ll--~~~~pgdYnI~SG~~~SV~d~l~~~~~~~g~~ 49 (86)
+-||.+|. -+=++||++|-.|-.-.|...+-++.++.|+.
T Consensus 146 ~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gik 187 (354)
T KOG0025|consen 146 CTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIK 187 (354)
T ss_pred hHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcc
Confidence 45665554 24568999999999999999999999999985
No 163
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=23.09 E-value=1.2e+02 Score=18.92 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCCCCc-EEEecCcee
Q psy15783 10 KYAMWMMLQQDTPQD-FVIATGETH 33 (86)
Q Consensus 10 v~a~~~ll~~~~pgd-YnI~SG~~~ 33 (86)
=.||-..|.- +||| |-|.=|+.|
T Consensus 44 G~AYT~~m~L-~PGdEFeI~LgrKh 67 (71)
T PF14250_consen 44 GSAYTKQMGL-KPGDEFEIKLGRKH 67 (71)
T ss_pred cHHHHHHhCC-CCCCEEEEEeCcce
Confidence 3678888754 6888 999988865
No 164
>PRK12828 short chain dehydrogenase; Provisional
Probab=23.02 E-value=1.2e+02 Score=20.36 Aligned_cols=28 Identities=7% Similarity=0.120 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHhcCCC---CCc-EEEecCce
Q psy15783 5 NLNLSKYAMWMMLQQDT---PQD-FVIATGET 32 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~---pgd-YnI~SG~~ 32 (86)
...+++++++.++.... +|. |+++.|..
T Consensus 206 ~~~dva~~~~~~l~~~~~~~~g~~~~~~g~~~ 237 (239)
T PRK12828 206 TPEQIAAVIAFLLSDEAQAITGASIPVDGGVA 237 (239)
T ss_pred CHHHHHHHHHHHhCcccccccceEEEecCCEe
Confidence 46778888888886542 577 77777754
No 165
>PTZ00174 phosphomannomutase; Provisional
Probab=22.99 E-value=67 Score=22.98 Aligned_cols=23 Identities=9% Similarity=-0.011 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCCCCc-EEEecCceee
Q psy15783 9 SKYAMWMMLQQDTPQD-FVIATGETHS 34 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgd-YnI~SG~~~S 34 (86)
..+|+..+.++ |- ++|||||+++
T Consensus 27 ~~~ai~~l~~~---Gi~~viaTGR~~~ 50 (247)
T PTZ00174 27 MKDTLAKLKSK---GFKIGVVGGSDYP 50 (247)
T ss_pred HHHHHHHHHHC---CCEEEEEcCCCHH
Confidence 35666665554 55 9999999875
No 166
>PF13550 Phage-tail_3: Putative phage tail protein
Probab=22.86 E-value=1.6e+02 Score=19.04 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.3
Q ss_pred ceeeHHHHHHHHHHHhCCceEeecC
Q psy15783 31 ETHSVREFVEAAFLYIGKTIVWEGT 55 (86)
Q Consensus 31 ~~~SV~d~l~~~~~~~g~~i~w~g~ 55 (86)
++.|.+|+|+.+++..+..+.|.+.
T Consensus 2 ~~~s~~~~l~~l~~~~~~~~~~~~g 26 (164)
T PF13550_consen 2 DQTSARDVLEPLLAAFGGDVVESGG 26 (164)
T ss_pred CccCHHHHHHHHHHhcCEEEEEECC
Confidence 3568999999999999998888773
No 167
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=22.74 E-value=57 Score=19.93 Aligned_cols=20 Identities=20% Similarity=0.503 Sum_probs=12.8
Q ss_pred ccCCcE-EEEEcCCCcCCCCC
Q psy15783 64 KDTGIV-RVKVNENYFRPTEV 83 (86)
Q Consensus 64 ~~~~~~-~v~iDp~~~RP~dv 83 (86)
+..|++ .|+|||+.+||.+.
T Consensus 37 ~g~g~v~~i~i~~~~~~~~~~ 57 (93)
T PF02575_consen 37 NGNGEVVDIEIDPSALRPLDP 57 (93)
T ss_dssp ETTS-EEEEEE-GGGGCTS-H
T ss_pred ecCceEEEEEEehHhhccCCH
Confidence 455555 89999999997653
No 168
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=22.58 E-value=95 Score=19.62 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCCCCCcEEEecCceeeHHHHHHHHHH--HhCCce
Q psy15783 9 SKYAMWMMLQQDTPQDFVIATGETHSVREFVEAAFL--YIGKTI 50 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgdYnI~SG~~~SV~d~l~~~~~--~~g~~i 50 (86)
+++++-.+.++ .++.++|.||. .||+..+.+ ..|..+
T Consensus 84 ~~d~~~~~~~~-~~d~ivLvSgD----~Df~~~v~~l~~~g~~V 122 (146)
T PF01936_consen 84 AVDILELAYEN-PPDTIVLVSGD----SDFAPLVRKLRERGKRV 122 (146)
T ss_dssp HHHHHHHG--G-G-SEEEEE-------GGGHHHHHHHHHH--EE
T ss_pred HHHHHHHhhcc-CCCEEEEEECc----HHHHHHHHHHHHcCCEE
Confidence 45555555544 34449999999 456655543 456654
No 169
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=22.42 E-value=1.6e+02 Score=21.22 Aligned_cols=39 Identities=8% Similarity=0.164 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCCCCcEEEecCce-eeHHHHHHHHHHHhCCce
Q psy15783 9 SKYAMWMMLQQDTPQDFVIATGET-HSVREFVEAAFLYIGKTI 50 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgdYnI~SG~~-~SV~d~l~~~~~~~g~~i 50 (86)
.++++-.+.+++. .+.++||.+ .|..++.+. ++.+|+++
T Consensus 22 a~~~l~~l~~~g~--~~~~~Tnn~~r~~~~~~~~-l~~~g~~~ 61 (249)
T TIGR01457 22 AETFVHELQKRDI--PYLFVTNNSTRTPESVAEM-LASFDIPA 61 (249)
T ss_pred HHHHHHHHHHCCC--eEEEEeCCCCCCHHHHHHH-HHHcCCCC
Confidence 3555555555432 299999866 566665554 45577765
No 170
>PRK00153 hypothetical protein; Validated
Probab=21.73 E-value=52 Score=21.01 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=14.0
Q ss_pred cCCcE-EEEEcCCCcCCCCC
Q psy15783 65 DTGIV-RVKVNENYFRPTEV 83 (86)
Q Consensus 65 ~~~~~-~v~iDp~~~RP~dv 83 (86)
..+++ .|+|||+.++|.|.
T Consensus 46 G~~~v~~i~Id~~ll~~~d~ 65 (104)
T PRK00153 46 GKKEVKRVKIDPSLVDPEDV 65 (104)
T ss_pred cCceEEEEEECHHHcCCcCH
Confidence 44444 89999999988664
No 171
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=21.72 E-value=1.4e+02 Score=19.48 Aligned_cols=31 Identities=13% Similarity=0.016 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHhcCCCCCc---EEEecCceeeH
Q psy15783 5 NLNLSKYAMWMMLQQDTPQD---FVIATGETHSV 35 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~pgd---YnI~SG~~~SV 35 (86)
++..+|++....++.+++|| |+.-=-+.+.+
T Consensus 69 ~ve~vv~~I~~~a~TG~~GDGkIfV~pV~~~~rI 102 (112)
T PRK10665 69 QLDEVIDIISKAAYTGKIGDGKIFVAELQRVIRI 102 (112)
T ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEEhhhEEEe
Confidence 45668999999999999987 55543333333
No 172
>PRK14625 hypothetical protein; Provisional
Probab=21.25 E-value=47 Score=21.98 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=15.0
Q ss_pred ccCCcE-EEEEcCCCcCCCCC
Q psy15783 64 KDTGIV-RVKVNENYFRPTEV 83 (86)
Q Consensus 64 ~~~~~~-~v~iDp~~~RP~dv 83 (86)
+.++++ .|+|||+++.|.|.
T Consensus 44 ~G~~~v~~I~Idp~ll~~eD~ 64 (109)
T PRK14625 44 MGNGELVRVLMDESLVQPGEG 64 (109)
T ss_pred ecCceEEEEEECHHHcCCccH
Confidence 344444 89999999998774
No 173
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=21.25 E-value=2.4e+02 Score=22.64 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHhc--------CC-CCC--c-EEEecCceeeHHHHHHHHHHHh----CCceEeec
Q psy15783 5 NLNLSKYAMWMMLQ--------QD-TPQ--D-FVIATGETHSVREFVEAAFLYI----GKTIVWEG 54 (86)
Q Consensus 5 n~~~~v~a~~~ll~--------~~-~pg--d-YnI~SG~~~SV~d~l~~~~~~~----g~~i~w~g 54 (86)
|++...+.||.+|. ++ .|+ + .++-.| .||.|+++.+-+-. .+..-|.-
T Consensus 276 nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~G--sTV~Dvc~~IH~~l~~~FryA~VWGk 339 (365)
T COG1163 276 NLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRG--STVGDVCRKIHRDLVENFRYARVWGK 339 (365)
T ss_pred CHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCC--CcHHHHHHHHHHHHHHhcceEEEecc
Confidence 78889999999995 12 232 4 788888 89999999986544 34444644
No 174
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=21.11 E-value=1.4e+02 Score=20.38 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=13.6
Q ss_pred cHHHHHHHHHHHhcCCC---CCc-EEEecC
Q psy15783 5 NLNLSKYAMWMMLQQDT---PQD-FVIATG 30 (86)
Q Consensus 5 n~~~~v~a~~~ll~~~~---pgd-YnI~SG 30 (86)
.+.+++++++.++.... .|. |+++.|
T Consensus 225 ~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 254 (258)
T PRK12429 225 TVEEIADYALFLASFAAKGVTGQAWVVDGG 254 (258)
T ss_pred CHHHHHHHHHHHcCccccCccCCeEEeCCC
Confidence 34556666666664322 244 666555
No 175
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=21.10 E-value=3.7e+02 Score=20.94 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCCCCc-EEEecCceeeHHHHHHHHHHHhCCceEeec
Q psy15783 7 NLSKYAMWMMLQQDTPQD-FVIATGETHSVREFVEAAFLYIGKTIVWEG 54 (86)
Q Consensus 7 ~~~v~a~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~~~~~~g~~i~w~g 54 (86)
+.+.+++..+++. -| .+.+.|-+.+=+|++..+++.+|..+.+++
T Consensus 222 ~~i~~~l~~a~~~---~DliittGG~s~g~~D~~~~al~~~g~~~~f~g 267 (394)
T cd00887 222 EALREALEEALEE---ADVVITSGGVSVGDYDFVKEVLEELGGEVLFHG 267 (394)
T ss_pred HHHHHHHHHHhhC---CCEEEEeCCCCCCcchhHHHHHHhCCCeEEEEE
Confidence 4456666666543 57 555556888889999999999987766655
No 176
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=21.01 E-value=1.4e+02 Score=25.55 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCCCcEEEe----cCceeeHHHHHHHHHHHhC
Q psy15783 9 SKYAMWMMLQQDTPQDFVIA----TGETHSVREFVEAAFLYIG 47 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgdYnI~----SG~~~SV~d~l~~~~~~~g 47 (86)
+-+||..|++...+.-.+|+ +||+.+-+-++..+...++
T Consensus 81 A~~Ay~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~ 123 (692)
T cd01385 81 ADVAYYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQ 123 (692)
T ss_pred HHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcc
Confidence 45788999887777668887 9999999999998877654
No 177
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.77 E-value=1.4e+02 Score=18.55 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=24.6
Q ss_pred EEEecCceeeHHHHHHHHHHHhCCceEee
Q psy15783 25 FVIATGETHSVREFVEAAFLYIGKTIVWE 53 (86)
Q Consensus 25 YnI~SG~~~SV~d~l~~~~~~~g~~i~w~ 53 (86)
|.+|+|.+..+.+.+...+...|.++..-
T Consensus 4 ~i~G~G~S~~~a~~~~~~l~~~g~~~~~~ 32 (128)
T cd05014 4 VVTGVGKSGHIARKIAATLSSTGTPAFFL 32 (128)
T ss_pred EEEeCcHhHHHHHHHHHHhhcCCCceEEc
Confidence 88999999999999888888888877543
No 178
>PRK00536 speE spermidine synthase; Provisional
Probab=20.67 E-value=81 Score=23.68 Aligned_cols=29 Identities=0% Similarity=-0.023 Sum_probs=24.8
Q ss_pred HHHHhcCCCCCc-EEEecCceeeHHHHHHH
Q psy15783 13 MWMMLQQDTPQD-FVIATGETHSVREFVEA 41 (86)
Q Consensus 13 ~~~ll~~~~pgd-YnI~SG~~~SV~d~l~~ 41 (86)
...|+.+++|-. .+||.|..=++||++..
T Consensus 64 Hppl~~h~~pk~VLIiGGGDGg~~REvLkh 93 (262)
T PRK00536 64 HMGGCTKKELKEVLIVDGFDLELAHQLFKY 93 (262)
T ss_pred HHHHhhCCCCCeEEEEcCCchHHHHHHHCc
Confidence 345667889988 99999999999999986
No 179
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=20.45 E-value=94 Score=19.52 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=18.7
Q ss_pred EEEecCceeeHHHHHHHHHHHhCC
Q psy15783 25 FVIATGETHSVREFVEAAFLYIGK 48 (86)
Q Consensus 25 YnI~SG~~~SV~d~l~~~~~~~g~ 48 (86)
|--||.+..+..++++-+.+.-..
T Consensus 39 FhTCSae~m~a~eLv~FL~~rgKf 62 (78)
T PF10678_consen 39 FHTCSAEGMTADELVDFLEERGKF 62 (78)
T ss_pred EEecCCCCCCHHHHHHHHHHcCCE
Confidence 888888888888888877765443
No 180
>PRK06138 short chain dehydrogenase; Provisional
Probab=20.40 E-value=1.5e+02 Score=20.19 Aligned_cols=29 Identities=10% Similarity=0.105 Sum_probs=20.1
Q ss_pred cccHHHHHHHHHHHhcCCC---CCc-EEEecCc
Q psy15783 3 ILNLNLSKYAMWMMLQQDT---PQD-FVIATGE 31 (86)
Q Consensus 3 ~gn~~~~v~a~~~ll~~~~---pgd-YnI~SG~ 31 (86)
.++..+++++++.+++... .|+ +.+.+|.
T Consensus 217 ~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~ 249 (252)
T PRK06138 217 FGTAEEVAQAALFLASDESSFATGTTLVVDGGW 249 (252)
T ss_pred CcCHHHHHHHHHHHcCchhcCccCCEEEECCCe
Confidence 4567778888888886643 467 7777664
No 181
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.07 E-value=2.1e+02 Score=17.49 Aligned_cols=30 Identities=23% Similarity=0.546 Sum_probs=25.0
Q ss_pred Cc-EEEecCceeeHHHHHHHHHHHhCCceEe
Q psy15783 23 QD-FVIATGETHSVREFVEAAFLYIGKTIVW 52 (86)
Q Consensus 23 gd-YnI~SG~~~SV~d~l~~~~~~~g~~i~w 52 (86)
.. |.+|+|.+.++-......+...|..+..
T Consensus 14 ~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~ 44 (139)
T cd05013 14 RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVL 44 (139)
T ss_pred CEEEEEEcCchHHHHHHHHHHHHHcCCceEE
Confidence 45 9999999999988888888888887653
No 182
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=20.06 E-value=1.5e+02 Score=25.25 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCCCCcEEE----ecCceeeHHHHHHHHHHHhC
Q psy15783 9 SKYAMWMMLQQDTPQDFVI----ATGETHSVREFVEAAFLYIG 47 (86)
Q Consensus 9 ~v~a~~~ll~~~~pgdYnI----~SG~~~SV~d~l~~~~~~~g 47 (86)
+-+||..|.+.+.+.-.+| |+||+.+-+-++..+....+
T Consensus 79 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~ 121 (677)
T cd01383 79 ADTAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGG 121 (677)
T ss_pred HHHHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCC
Confidence 4578899998777766777 89999999998888776654
Done!