RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15783
         (86 letters)



>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
           [TaxId: 562]}
          Length = 357

 Score = 54.4 bits (130), Expect = 5e-11
 Identities = 37/83 (44%), Positives = 47/83 (56%), Gaps = 10/83 (12%)

Query: 11  YAMWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDT---- 66
              WMMLQQ+ P+DFVIATG  +SVR+FVE A   +G  + +EGTG +E G         
Sbjct: 234 KMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHD 293

Query: 67  ------GIVRVKVNENYFRPTEV 83
                 G V + V+  YFRP EV
Sbjct: 294 APGVKPGDVIIAVDPRYFRPAEV 316


>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 347

 Score = 48.8 bits (115), Expect = 6e-09
 Identities = 49/71 (69%), Positives = 59/71 (83%)

Query: 13  MWMMLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKDEVGKEKDTGIVRVK 72
           MW+MLQ D P+DFVIATGE HSVREFVE +FL+IGKTIVWEG  ++EVG+ K+TG V V 
Sbjct: 237 MWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVT 296

Query: 73  VNENYFRPTEV 83
           V+  Y+RPTEV
Sbjct: 297 VDLKYYRPTEV 307


>d1sqra_ b.43.3.3 (A:) Ribosomal protein L35ae {Pyrococcus
          furiosus [TaxId: 2261]}
          Length = 87

 Score = 25.4 bits (56), Expect = 0.59
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 8/43 (18%)

Query: 40 EAAFLYIGKTIVWEGTGKDEVGKEKDT------GIVRVKVNEN 76
          EA+   IG+ ++W+     ++ K K        G VR +  + 
Sbjct: 34 EASK-LIGRLVLWKSPSG-KILKGKIVRVHGTKGAVRARFEKG 74


>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
           {Sheep (Ovis aries) [TaxId: 9940]}
          Length = 494

 Score = 23.1 bits (49), Expect = 5.9
 Identities = 12/43 (27%), Positives = 15/43 (34%)

Query: 16  MLQQDTPQDFVIATGETHSVREFVEAAFLYIGKTIVWEGTGKD 58
            +      D V  TG T   +   EAA     K +  E  GK 
Sbjct: 225 AISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKS 267


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0664    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 318,688
Number of extensions: 12069
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 8
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)