Query psy15784
Match_columns 231
No_of_seqs 139 out of 1154
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 21:15:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0810|consensus 100.0 1.6E-37 3.5E-42 266.5 25.6 218 3-231 47-277 (297)
2 KOG0811|consensus 100.0 4E-36 8.6E-41 253.8 22.3 216 1-231 26-251 (269)
3 KOG0809|consensus 100.0 7.5E-29 1.6E-33 207.8 20.2 206 10-230 79-288 (305)
4 COG5074 t-SNARE complex subuni 99.9 5.6E-26 1.2E-30 184.4 19.4 192 23-231 59-256 (280)
5 COG5325 t-SNARE complex subuni 99.9 4.1E-22 8.9E-27 166.1 19.9 198 16-231 64-266 (283)
6 PF14523 Syntaxin_2: Syntaxin- 99.6 1E-14 2.2E-19 107.4 12.2 97 1-99 1-101 (102)
7 cd00179 SynN Syntaxin N-termin 99.6 2.8E-14 6.2E-19 112.1 12.7 110 1-110 11-129 (151)
8 PF05739 SNARE: SNARE domain; 99.6 2.3E-14 5E-19 96.3 10.1 63 158-220 1-63 (63)
9 cd00193 t_SNARE Soluble NSF (N 99.4 5.6E-13 1.2E-17 88.3 7.7 59 157-215 2-60 (60)
10 KOG0812|consensus 99.4 3.3E-10 7.2E-15 95.4 21.1 193 30-224 80-290 (311)
11 smart00503 SynN Syntaxin N-ter 99.3 1.4E-11 3E-16 92.6 11.1 97 1-97 13-117 (117)
12 smart00397 t_SNARE Helical reg 99.3 1.6E-11 3.6E-16 82.6 9.1 63 153-215 4-66 (66)
13 PF00804 Syntaxin: Syntaxin; 98.5 1.1E-06 2.4E-11 64.0 8.4 80 3-82 14-103 (103)
14 KOG3894|consensus 97.8 9.3E-05 2E-09 63.8 7.5 78 153-230 224-302 (316)
15 KOG3202|consensus 97.5 0.034 7.4E-07 46.8 18.5 74 155-228 146-219 (235)
16 KOG3065|consensus 93.0 0.51 1.1E-05 40.7 7.7 57 158-214 215-271 (273)
17 COG5074 t-SNARE complex subuni 89.8 11 0.00024 31.7 12.4 68 150-217 181-248 (280)
18 PF00957 Synaptobrevin: Synapt 87.0 2.9 6.4E-05 29.4 6.2 50 161-210 3-52 (89)
19 KOG3385|consensus 86.4 2.5 5.5E-05 31.5 5.6 71 157-228 32-102 (118)
20 KOG0810|consensus 83.8 29 0.00063 30.4 17.2 74 147-220 199-272 (297)
21 KOG0860|consensus 64.5 30 0.00064 25.9 6.0 27 170-196 38-64 (116)
22 PF02346 Vac_Fusion: Chordopox 63.6 38 0.00083 22.0 6.3 44 162-205 2-45 (57)
23 PF04102 SlyX: SlyX; InterPro 63.5 42 0.00091 22.5 6.7 49 161-209 4-52 (69)
24 cd00193 t_SNARE Soluble NSF (N 60.7 38 0.00083 21.0 7.7 53 166-218 4-56 (60)
25 PRK04325 hypothetical protein; 56.9 60 0.0013 22.1 8.0 45 163-207 11-55 (74)
26 KOG3065|consensus 56.6 49 0.0011 28.6 6.9 48 169-216 87-134 (273)
27 PF11598 COMP: Cartilage oligo 56.1 27 0.00058 21.6 3.8 25 165-189 5-29 (45)
28 PRK00295 hypothetical protein; 52.8 67 0.0015 21.5 7.6 46 163-208 7-52 (68)
29 COG5325 t-SNARE complex subuni 47.9 1.9E+02 0.004 25.1 12.2 69 152-220 193-261 (283)
30 PRK02793 phi X174 lysis protei 46.3 91 0.002 21.1 7.6 47 161-207 8-54 (72)
31 PF09753 Use1: Membrane fusion 45.4 71 0.0015 27.0 6.2 52 177-230 183-234 (251)
32 PRK00736 hypothetical protein; 45.3 91 0.002 20.8 7.6 45 163-207 7-51 (68)
33 PRK15041 methyl-accepting chem 44.4 2.8E+02 0.0061 26.2 11.2 54 154-207 433-486 (554)
34 PRK09793 methyl-accepting prot 42.3 3E+02 0.0064 25.9 11.1 55 154-208 429-483 (533)
35 PRK04406 hypothetical protein; 39.7 1.2E+02 0.0027 20.7 7.5 47 161-207 11-57 (75)
36 PHA02675 ORF104 fusion protein 39.2 1.4E+02 0.0029 21.0 6.5 34 172-205 41-74 (90)
37 PRK15048 methyl-accepting chem 38.4 3.4E+02 0.0074 25.4 11.2 52 155-206 432-483 (553)
38 PF07889 DUF1664: Protein of u 37.8 1.8E+02 0.0039 22.1 6.9 36 162-197 90-125 (126)
39 PF00015 MCPsignal: Methyl-acc 36.6 2.1E+02 0.0046 22.6 11.6 61 154-214 128-188 (213)
40 PF12352 V-SNARE_C: Snare regi 36.4 1.2E+02 0.0026 19.6 9.9 54 163-216 10-63 (66)
41 smart00397 t_SNARE Helical reg 35.0 1.2E+02 0.0025 19.0 9.2 54 163-216 7-60 (66)
42 PF12325 TMF_TATA_bd: TATA ele 34.3 67 0.0014 24.2 3.8 31 151-181 86-116 (120)
43 KOG0570|consensus 33.4 2.8E+02 0.006 22.9 7.8 62 153-216 93-160 (223)
44 PRK02119 hypothetical protein; 33.2 1.6E+02 0.0034 20.0 7.8 47 161-207 9-55 (73)
45 PF07544 Med9: RNA polymerase 30.7 1.1E+02 0.0023 21.3 4.1 30 155-184 53-82 (83)
46 PHA03046 Hypothetical protein; 30.3 2.5E+02 0.0055 21.5 6.8 51 155-205 78-128 (142)
47 KOG1962|consensus 30.1 3.3E+02 0.0071 22.8 8.1 60 27-91 149-208 (216)
48 PF10498 IFT57: Intra-flagella 28.9 3.6E+02 0.0078 24.3 8.2 63 29-95 223-285 (359)
49 PF07432 Hc1: Histone H1-like 25.9 2.9E+02 0.0062 20.7 6.4 44 173-216 2-45 (123)
50 PRK00846 hypothetical protein; 22.7 2.7E+02 0.0058 19.2 7.6 47 162-208 14-60 (77)
51 KOG0972|consensus 22.4 3.1E+02 0.0068 24.1 6.2 60 28-91 229-288 (384)
52 PF05377 FlaC_arch: Flagella a 21.5 2.4E+02 0.0051 18.2 6.2 18 160-177 27-44 (55)
53 PF10805 DUF2730: Protein of u 21.5 1.9E+02 0.0041 21.0 4.2 19 70-88 73-91 (106)
54 TIGR03090 SASP_tlp small, acid 21.3 2.2E+02 0.0047 19.3 4.0 26 190-215 9-34 (70)
55 PF07106 TBPIP: Tat binding pr 20.9 4.1E+02 0.0089 20.7 7.5 34 23-56 73-106 (169)
56 PF01519 DUF16: Protein of unk 20.8 3.5E+02 0.0075 19.8 7.6 41 162-202 54-94 (102)
57 PF15205 PLAC9: Placenta-speci 20.7 1.9E+02 0.0042 19.5 3.6 23 190-212 26-48 (74)
58 PF11945 WASH_WAHD: WAHD domai 20.4 5.3E+02 0.012 22.6 7.4 35 173-207 34-68 (297)
No 1
>KOG0810|consensus
Probab=100.00 E-value=1.6e-37 Score=266.47 Aligned_cols=218 Identities=22% Similarity=0.360 Sum_probs=183.8
Q ss_pred hhhhhHH----HHHHH-HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CC-CCCcHHHHHHHHHHH
Q psy15784 3 SNILRIS----SMKRM-VNLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDT----PL-PSSPSEQRQCKMQKE 72 (231)
Q Consensus 3 ~ni~~i~----~l~k~-~~~lgt~~d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~----~~-~~~~~~~r~~k~q~~ 72 (231)
..|.++. .|.+. .+.|.+|...++++.+|+.+...+....+.++..|+.+... +. +++.+..|++++|+.
T Consensus 47 ~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~rrtq~~ 126 (297)
T KOG0810|consen 47 DDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAGLRTRRTQTS 126 (297)
T ss_pred HHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchhHHHHHH
Confidence 3444544 45553 58888999999999999999999999999999999999983 21 245667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccCCccccCccchhhhhhh-hhhhHHHHHHH-HHhh
Q psy15784 73 RLADDFSTALNAFQDVQKLAHKKESDQIKKTKVISKLPPPPGRQAVSGEEFGDRTQDQLIELQ-DNGSQQLQQQR-QQDF 150 (231)
Q Consensus 73 ~L~~~f~~~l~~fq~~q~~~~~~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~q~q~q~-~~~~ 150 (231)
.+.+.|.++|..|+..+..|+++++.++.|++.++++..|+++ +.+.++..| ...|.+.-.+. .+..
T Consensus 127 ~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de-----------~ie~~ie~g~~~~f~~~~i~~~~~~~ 195 (297)
T KOG0810|consen 127 ALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDE-----------EIEEMIESGGSEVFTQKAIQDRGQAK 195 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChH-----------HHHHHHHCCChHHHHHHHHHHhhhhH
Confidence 9999999999999999999999999999999999986434444 334444322 23343322222 5677
Q ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeEe
Q psy15784 151 INLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV-SRILPLKVL 229 (231)
Q Consensus 151 ~~~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~-~rk~~~~ll 229 (231)
..+.++++||.+|++||++|.|||+||.|||.||+.||++||+||+||++|.+||++|+.++.+|.+||+ +|||+|||+
T Consensus 196 ~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~i 275 (297)
T KOG0810|consen 196 QTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIII 275 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeee
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999 999999998
Q ss_pred cC
Q psy15784 230 VL 231 (231)
Q Consensus 230 i~ 231 (231)
|+
T Consensus 276 i~ 277 (297)
T KOG0810|consen 276 II 277 (297)
T ss_pred hH
Confidence 74
No 2
>KOG0811|consensus
Probab=100.00 E-value=4e-36 Score=253.79 Aligned_cols=216 Identities=39% Similarity=0.520 Sum_probs=173.8
Q ss_pred CchhhhhHH----HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHH
Q psy15784 1 MVSNILRIS----SMKRMVNLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQKERLAD 76 (231)
Q Consensus 1 i~~ni~~i~----~l~k~~~~lgt~~d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~r~~k~q~~~L~~ 76 (231)
|+.||++|+ +|.|.+..+||+.|++.+|++++.....++.+++.+...|+++..+. . .++.+..+.+.++|.+
T Consensus 26 i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~--~-~~~~~~~k~~~~kL~~ 102 (269)
T KOG0811|consen 26 IAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLR--L-ESDLRQLKIQLDKLVD 102 (269)
T ss_pred HHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-hhHHHHHHHHHHHHHH
Confidence 467899999 99999999999999999999999999999999999999999999986 2 4667999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhhhcCCCC--CCCCcccCCccccCccchhhhhhhhhhhH--HHHHHHHH-hhH
Q psy15784 77 DFSTALNAFQDVQKLAHKKESDQIKKTKVISKLPP--PPGRQAVSGEEFGDRTQDQLIELQDNGSQ--QLQQQRQQ-DFI 151 (231)
Q Consensus 77 ~f~~~l~~fq~~q~~~~~~~k~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--q~q~q~~~-~~~ 151 (231)
+|..++++|+.+|..+.+.+| ...++. .++.+. +.++. ...+...++..... +.+.|... ...
T Consensus 103 ef~~~l~efq~vQrk~ae~ek-~~~~a~-~s~~s~~~~~~~~----------~~~~~~~~~~~~~~q~e~~~q~~e~~~~ 170 (269)
T KOG0811|consen 103 EFSAALKEFQKVQRKSAEREK-IPMVAR-GSQNSQQLDEESP----------RVDELSNNGSQSQQQLEEQAQDNEILEY 170 (269)
T ss_pred HHHHHHHHHHHHHHHhHHhhc-cccccc-ccccchhhhhhhh----------hhhhhhccchhhhhHHHHHHhhhhhhhh
Confidence 999999999999999999998 222222 221110 00000 11111111111111 12222222 445
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeEec
Q psy15784 152 NLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV-SRILPLKVLV 230 (231)
Q Consensus 152 ~~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~-~rk~~~~lli 230 (231)
.+..+++|.+.|.+||.+|.|||+||+||+.||++||++||+||+||++|..||+.|..+|.+|.+|++ +|+|+||+++
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~ 250 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLL 250 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhH
Confidence 778999999999999999999999999999999999999999999999999999999999999999999 9999988865
Q ss_pred C
Q psy15784 231 L 231 (231)
Q Consensus 231 ~ 231 (231)
+
T Consensus 251 v 251 (269)
T KOG0811|consen 251 V 251 (269)
T ss_pred H
Confidence 3
No 3
>KOG0809|consensus
Probab=99.97 E-value=7.5e-29 Score=207.80 Aligned_cols=206 Identities=24% Similarity=0.297 Sum_probs=161.3
Q ss_pred HHHHHH--HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15784 10 SMKRMV--NLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQKERLADDFSTALNAFQD 87 (231)
Q Consensus 10 ~l~k~~--~~lgt~~d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~r~~k~q~~~L~~~f~~~l~~fq~ 87 (231)
+|.+.. ....++.|...-...|+.++.+++.++++|.+.|+.+.......++.+..++++.+..++.+++.+..+|+.
T Consensus 79 eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~~n~~~~la~~LQ~~s~~fR~ 158 (305)
T KOG0809|consen 79 ELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLLRKNAQGYLALQLQTLSREFRG 158 (305)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455533 347788888888999999999999999999999999998654456677788999999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhhhhcCCCCCCCCcccCCccccCc-cchhhhhhhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHH
Q psy15784 88 VQKLAHKKESDQIKKTKVISKLPPPPGRQAVSGEEFGDR-TQDQLIELQDNGSQQLQQQRQQDFINLREAEEQEQAIRQL 166 (231)
Q Consensus 88 ~q~~~~~~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~q~q~q~~~~~~~~~~i~eR~~ei~~i 166 (231)
.|..|.++.+.+-.+-.. .+. ...+..+. +.+. +.+..+++.| +...+.+...+.+|++||.+|
T Consensus 159 ~Qs~YLK~l~~~ee~~~~-------~e~---~~~~~~~~~dd~d---~~~~~~qe~q--l~~~e~~~~~~~erE~EV~ql 223 (305)
T KOG0809|consen 159 LQSKYLKRLRNREENSQE-------YED---SLDNTVDLPDDED---FSDRTFQEQQ--LMLFENNEEVVREREKEVTQL 223 (305)
T ss_pred HHHHHHHHhhchhhcccc-------hhh---hccccccCcchhh---hhhhhHHHHH--HHHHhcchHHHHHHHHHHHHH
Confidence 999999998754432111 010 00000000 1111 1123343332 234555667899999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeEec
Q psy15784 167 ESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV-SRILPLKVLV 230 (231)
Q Consensus 167 e~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~-~rk~~~~lli 230 (231)
.+||.||++||+||+.||.+||++||+|||||+++..+|+.|.++|.||..||| .+|++|||++
T Consensus 224 ~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L 288 (305)
T KOG0809|consen 224 VESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILML 288 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHH
Confidence 999999999999999999999999999999999999999999999999999999 8888777654
No 4
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.95 E-value=5.6e-26 Score=184.38 Aligned_cols=192 Identities=17% Similarity=0.261 Sum_probs=158.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q psy15784 23 DSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQKERLADDFSTALNAFQDVQKLAHKKESDQIKK 102 (231)
Q Consensus 23 d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~r~~k~q~~~L~~~f~~~l~~fq~~q~~~~~~~k~~~~r 102 (231)
.+..++..|+..+.+++.|-..++..++.+.+-. -.+..++.|-.....+|.++++.|..++..|++.++++++|
T Consensus 59 ~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~-----ihl~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rr 133 (280)
T COG5074 59 QSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDG-----IHLANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARR 133 (280)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcc-----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3557899999999999999999999999888743 12244677888899999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCcccCCccccCccchhhhh--hhhhhhHHHHHHH---HHhhHhHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy15784 103 TKVISKLPPPPGRQAVSGEEFGDRTQDQLIE--LQDNGSQQLQQQR---QQDFINLREAEEQEQAIRQLESDIRDVNQIF 177 (231)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~q~q~q~---~~~~~~~~~i~eR~~ei~~ie~~i~el~~if 177 (231)
++.++. |++++.+ .+..+. .|.++|.++-+.. ..++..|.++++||.+|++||++|.||-++|
T Consensus 134 Qy~Ia~---P~ATEde---------ve~aInd~nG~qvfsqalL~anr~geAktaL~Evq~Rh~~ikkiEkt~ael~qLf 201 (280)
T COG5074 134 QYIIAQ---PEATEDE---------VEAAINDVNGQQVFSQALLNANRRGEAKTALAEVQARHQEIKKIEKTMAELTQLF 201 (280)
T ss_pred hhhhcC---CccchHH---------HHHHhcccchHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 4554211 111110 1234455543222 4577889999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeEecC
Q psy15784 178 KELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV-SRILPLKVLVL 231 (231)
Q Consensus 178 ~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~-~rk~~~~lli~ 231 (231)
+||+.||.+|.++||.|+.|++++.++|++|+.++.+|.+|.+ +||++|+|+.|
T Consensus 202 ndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI 256 (280)
T COG5074 202 NDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGI 256 (280)
T ss_pred HHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhh
Confidence 9999999999999999999999999999999999999999999 99888877543
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.90 E-value=4.1e-22 Score=166.08 Aligned_cols=198 Identities=21% Similarity=0.300 Sum_probs=137.8
Q ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15784 16 NLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQKERLADDFSTALNAFQDVQKLAHKK 95 (231)
Q Consensus 16 ~~lgt~~d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~r~~k~q~~~L~~~f~~~l~~fq~~q~~~~~~ 95 (231)
..+..+.|...=.+.+..+...++..+..|...++..-.-. .......+|..+|...+..++.+|+.+.+-
T Consensus 64 ~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~---------~s~~~~~kll~~~nt~~~~~~~iq~~~aq~ 134 (283)
T COG5325 64 HTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNL---------QSSFLQSKLLRDLNTECMEGQRIQQKSAQF 134 (283)
T ss_pred HhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhcccchhhhHHHHHHHHHHH
Confidence 44445566655566677777777777777777666543211 122235788999999999999999999888
Q ss_pred HhHHHHhhhhhcCC--C-CCCCCcccCCccccCccchhhhhhhhhhhHHHHHHH-HHhhHhHHHHHHHHHHHHHHHhhHH
Q psy15784 96 ESDQIKKTKVISKL--P-PPPGRQAVSGEEFGDRTQDQLIELQDNGSQQLQQQR-QQDFINLREAEEQEQAIRQLESDIR 171 (231)
Q Consensus 96 ~k~~~~r~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~q~q~q~-~~~~~~~~~i~eR~~ei~~ie~~i~ 171 (231)
.+..........+. . +|-++.. ....+...+++.-.+.+... .+.+.....+.+|.++|.+|.++|.
T Consensus 135 r~~~~~~~k~l~~~~~~~~~l~eee---------~e~~~~~~~sq~~lqq~~l~~ee~~~qq~l~~er~~eI~~l~~gI~ 205 (283)
T COG5325 135 RKYQVLQAKFLRNKNNDQHPLEEEE---------DEESLSSLGSQQTLQQQGLSNEELEYQQILITERDEEIKNLARGIY 205 (283)
T ss_pred HHHHHHHhHHHHhcccccCchhhhh---------hhhhhhccchhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655554211 1 1211100 11111111111111111010 2333344469999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeEecC
Q psy15784 172 DVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV-SRILPLKVLVL 231 (231)
Q Consensus 172 el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~-~rk~~~~lli~ 231 (231)
||++||.||+++|.+||+.||+||+|++++..|++.|..+|.+|..||| ++||.+|+|++
T Consensus 206 Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Lli 266 (283)
T COG5325 206 ELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLI 266 (283)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHH
Confidence 9999999999999999999999999999999999999999999999999 99998888764
No 6
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=99.62 E-value=1e-14 Score=107.43 Aligned_cols=97 Identities=37% Similarity=0.593 Sum_probs=84.6
Q ss_pred CchhhhhHH----HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHH
Q psy15784 1 MVSNILRIS----SMKRMVNLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQKERLAD 76 (231)
Q Consensus 1 i~~ni~~i~----~l~k~~~~lgt~~d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~r~~k~q~~~L~~ 76 (231)
|+.+|++|+ .|+++++.|||++|++.+|++|+.++..++.+++.+...|+.|..+. .....++..+.+.++|.+
T Consensus 1 is~~l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~--~~~~~~~~~k~~~~KL~~ 78 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLS--SDRSNDRQQKLQREKLSR 78 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH------HHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhHHHHHHHHHHHH
Confidence 688999999 99999999999999999999999999999999999999999999982 123567889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q psy15784 77 DFSTALNAFQDVQKLAHKKESDQ 99 (231)
Q Consensus 77 ~f~~~l~~fq~~q~~~~~~~k~~ 99 (231)
+|..++++|+.+|+.|.+++++.
T Consensus 79 df~~~l~~fq~~q~~~~~~~k~~ 101 (102)
T PF14523_consen 79 DFKEALQEFQKAQRRYAEKEKQT 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999864
No 7
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.59 E-value=2.8e-14 Score=112.12 Aligned_cols=110 Identities=24% Similarity=0.320 Sum_probs=98.0
Q ss_pred CchhhhhHH----HHHHHHHHcCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----CCCcHHHHHHHHHH
Q psy15784 1 MVSNILRIS----SMKRMVNLLGTAQD-SSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPL----PSSPSEQRQCKMQK 71 (231)
Q Consensus 1 i~~ni~~i~----~l~k~~~~lgt~~d-~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~~----~~~~~~~r~~k~q~ 71 (231)
|+.+|++|+ .|.++...++++.| ++.++.+|+.+..+++.+++.++..|+.|...+. .+++++.|++++++
T Consensus 11 I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~ 90 (151)
T cd00179 11 IRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQH 90 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 456788888 88888888888887 8899999999999999999999999999998531 12457889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhcCCC
Q psy15784 72 ERLADDFSTALNAFQDVQKLAHKKESDQIKKTKVISKLP 110 (231)
Q Consensus 72 ~~L~~~f~~~l~~fq~~q~~~~~~~k~~~~r~~~~~~~~ 110 (231)
.+|.++|+++|++|+.+|..|++++|..+.|++.++++.
T Consensus 91 ~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~ 129 (151)
T cd00179 91 SGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGE 129 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999998744
No 8
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.58 E-value=2.3e-14 Score=96.34 Aligned_cols=63 Identities=33% Similarity=0.674 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15784 158 EQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV 220 (231)
Q Consensus 158 eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~ 220 (231)
+|+++|..|+.+|.+|++||.+|+.+|.+||++||+|++||+.|..++..|..+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999999999999999999999999999986
No 9
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.44 E-value=5.6e-13 Score=88.25 Aligned_cols=59 Identities=41% Similarity=0.706 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15784 157 EEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDA 215 (231)
Q Consensus 157 ~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A 215 (231)
++|+++|..|+.+|.+|+.||.+|+.+|.+||++||+|++|++.+..++..|...|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999999999999999999999999999999999875
No 10
>KOG0812|consensus
Probab=99.36 E-value=3.3e-10 Score=95.45 Aligned_cols=193 Identities=17% Similarity=0.165 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-hh
Q psy15784 30 QLYQIQHYTQQLAKDTNHILKQLNDTP---LPSSPS-EQRQCKMQKERLADDFSTALNAFQDVQKLAHKKESDQIKK-TK 104 (231)
Q Consensus 30 ~l~~~~~~~~~l~~~i~~~l~~l~~~~---~~~~~~-~~r~~k~q~~~L~~~f~~~l~~fq~~q~~~~~~~k~~~~r-~~ 104 (231)
+|.+++--+...+..+...|-.|..+. .+.+.. -..--++.+..|...+..+...|+.+-.--.+-+++.-.| ..
T Consensus 80 eI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dk 159 (311)
T KOG0812|consen 80 EIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDK 159 (311)
T ss_pred hhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 466666666666666666665555532 111111 1233567788888888888888888876666666654444 33
Q ss_pred hhcCCCC-CCCCccc------CCcc---ccCccchh---hhhhhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHhhHH
Q psy15784 105 VISKLPP-PPGRQAV------SGEE---FGDRTQDQ---LIELQDNGSQQLQQQRQQDFINLREAEEQEQAIRQLESDIR 171 (231)
Q Consensus 105 ~~~~~~~-~~~~~~~------~~~~---~~~~~~~~---l~~~~~~~~~q~q~q~~~~~~~~~~i~eR~~ei~~ie~~i~ 171 (231)
..+++.+ |...... .... ..+-.+++ +-.++....+++ |+...+.....+++|...+..||..|.
T Consensus 160 fs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~~~qqq--Qm~ll~es~~Y~Q~R~~~~q~IEstIs 237 (311)
T KOG0812|consen 160 FSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDSSNPQQQ--QMALLDESDEYVQERAKTMQNIESTIS 237 (311)
T ss_pred hccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333211 1111110 0000 00001111 111111112222 333334446689999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q psy15784 172 DVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTVSRIL 224 (231)
Q Consensus 172 el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~~rk~ 224 (231)
||.+||.+||+||.+|||++.+||+||..+.-+++.|..+|.|.-..-.+.+|
T Consensus 238 ElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRw 290 (311)
T KOG0812|consen 238 ELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRW 290 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchH
Confidence 99999999999999999999999999999999999999999776554444444
No 11
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.34 E-value=1.4e-11 Score=92.57 Aligned_cols=97 Identities=28% Similarity=0.431 Sum_probs=84.3
Q ss_pred CchhhhhHH----HHHHHHHHcCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCcHHHHHHHHHHH
Q psy15784 1 MVSNILRIS----SMKRMVNLLGTAQDS-SDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPL---PSSPSEQRQCKMQKE 72 (231)
Q Consensus 1 i~~ni~~i~----~l~k~~~~lgt~~d~-~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~~---~~~~~~~r~~k~q~~ 72 (231)
|+.+|++|+ .|+++...++++.+. +.++.+|+.+..+++.+++.|+..|+.|...+. ..++++.|++++++.
T Consensus 13 I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~ 92 (117)
T smart00503 13 IRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTE 92 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHH
Confidence 467788888 888888888877775 689999999999999999999999999998642 123567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15784 73 RLADDFSTALNAFQDVQKLAHKKES 97 (231)
Q Consensus 73 ~L~~~f~~~l~~fq~~q~~~~~~~k 97 (231)
+|.++|+++|.+|+.+|..|.+++|
T Consensus 93 ~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 93 KLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999998764
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.32 E-value=1.6e-11 Score=82.57 Aligned_cols=63 Identities=33% Similarity=0.591 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15784 153 LREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDA 215 (231)
Q Consensus 153 ~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A 215 (231)
...+.+|+.+|..|+.++.+++.||.+|+.+|.+||++||+|++|+..+..++..|...|.+|
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999999999999999999999875
No 13
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=98.47 E-value=1.1e-06 Score=63.97 Aligned_cols=80 Identities=24% Similarity=0.352 Sum_probs=62.8
Q ss_pred hhhhhHH----HHHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCCcHHHHHHHHHHH
Q psy15784 3 SNILRIS----SMKRMV-NLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDT-----PLPSSPSEQRQCKMQKE 72 (231)
Q Consensus 3 ~ni~~i~----~l~k~~-~~lgt~~d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~-----~~~~~~~~~r~~k~q~~ 72 (231)
..|..|. .|.++. ..+.++.++..++.+|+.++.+|+.+++.|+..|+.|... ....++++.|++++++.
T Consensus 14 ~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~~ri~~nq~~ 93 (103)
T PF00804_consen 14 EDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNEVRIRKNQVQ 93 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHHHH
Confidence 3444444 566654 5555555446899999999999999999999999999986 23456789999999999
Q ss_pred HHHHHHHHHH
Q psy15784 73 RLADDFSTAL 82 (231)
Q Consensus 73 ~L~~~f~~~l 82 (231)
.|+++|+++|
T Consensus 94 ~L~~kf~~~m 103 (103)
T PF00804_consen 94 ALSKKFQEVM 103 (103)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
Confidence 9999999886
No 14
>KOG3894|consensus
Probab=97.77 E-value=9.3e-05 Score=63.76 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeEec
Q psy15784 153 LREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV-SRILPLKVLV 230 (231)
Q Consensus 153 ~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~-~rk~~~~lli 230 (231)
+....+-.+++++|++.|.|+..|=.-|+.-|-+|..-||.|-+++..|..|++.|+..|.+|..... .|.|.++++|
T Consensus 224 ~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~ll 302 (316)
T KOG3894|consen 224 LNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLL 302 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHH
Confidence 34556677899999999999999999999999999999999999999999999999999999999988 8888776654
No 15
>KOG3202|consensus
Probab=97.46 E-value=0.034 Score=46.77 Aligned_cols=74 Identities=16% Similarity=0.294 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcCCcceeE
Q psy15784 155 EAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTVSRILPLKV 228 (231)
Q Consensus 155 ~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~~rk~~~~l 228 (231)
.+++-.+.+..|+.+|.-+..|=..++.-+.+||.++|..++-++.+...+..+.+.|.+-.+.+..+.+||++
T Consensus 146 m~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~i 219 (235)
T KOG3202|consen 146 MLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAI 219 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 57778889999999999999999999999999999999999999999999999999998888722244444443
No 16
>KOG3065|consensus
Probab=93.03 E-value=0.51 Score=40.68 Aligned_cols=57 Identities=25% Similarity=0.424 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy15784 158 EQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKD 214 (231)
Q Consensus 158 eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~ 214 (231)
+=+..+.+|-..+..|..|-.+|+.-|..|.+.||+|+++|+.....|..++.-+++
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 456678888889999999999999999999999999999999999999999887654
No 17
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=89.83 E-value=11 Score=31.74 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=50.4
Q ss_pred hHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15784 150 FINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAM 217 (231)
Q Consensus 150 ~~~~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~ 217 (231)
+.-...|..=++-+.+|.+-..++.+|..+=-.+|.-=...+...+.||+.+..++.+|.+...+|++
T Consensus 181 q~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRk 248 (280)
T COG5074 181 QARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARK 248 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHh
Confidence 33344555555566666666667777788888888888888888999999999999999988554443
No 18
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=87.04 E-value=2.9 Score=29.38 Aligned_cols=50 Identities=16% Similarity=0.324 Sum_probs=37.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHH
Q psy15784 161 QAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNT 210 (231)
Q Consensus 161 ~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~ 210 (231)
+.+.++...+.++..++.+=-..+.+-|+.++.++...+.-......-..
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k 52 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKK 52 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHH
Confidence 35677888888888888888888889999999999877666555544433
No 19
>KOG3385|consensus
Probab=86.36 E-value=2.5 Score=31.47 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcCCcceeE
Q psy15784 157 EEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTVSRILPLKV 228 (231)
Q Consensus 157 ~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~~rk~~~~l 228 (231)
.|-++.+..|...|.-|..+--++..-|..|...+|.+++...++..........+..-.+. ..++.+||+
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m 102 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWM 102 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHH
Confidence 34556778888889999999999999999999999999999999999999998888665544 355555544
No 20
>KOG0810|consensus
Probab=83.83 E-value=29 Score=30.38 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=65.9
Q ss_pred HHhhHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15784 147 QQDFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV 220 (231)
Q Consensus 147 ~~~~~~~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~ 220 (231)
...+.-.++|..=++.|.+|++--.++..|...=+.||..=...|.+-..+|+.+.+++.+|...-++|+++.-
T Consensus 199 ~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~ 272 (297)
T KOG0810|consen 199 AEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKI 272 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcee
Confidence 44455567888999999999999999999999999999999999999999999999999999988888877654
No 21
>KOG0860|consensus
Probab=64.50 E-value=30 Score=25.92 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy15784 170 IRDVNQIFKELGAMVHDQGELIDSIEA 196 (231)
Q Consensus 170 i~el~~if~~l~~lV~~Qg~~id~Ie~ 196 (231)
+.++-.|+++==.=|-+-|+-||.+++
T Consensus 38 vdeVv~IMr~NV~KVlER~ekL~~L~d 64 (116)
T KOG0860|consen 38 VDEVVDIMRENVEKVLERGEKLDELDD 64 (116)
T ss_pred HHHHHHHHHHhHHHHHHhcchHHHHHH
Confidence 334444444444444455555555554
No 22
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=63.62 E-value=38 Score=22.02 Aligned_cols=44 Identities=20% Similarity=0.401 Sum_probs=36.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHH
Q psy15784 162 AIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYV 205 (231)
Q Consensus 162 ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v 205 (231)
+++.++.-+..|-..|.....--...++.+++.|.+++....++
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~m 45 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYM 45 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 35677777888888888888888999999999999988876654
No 23
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=63.48 E-value=42 Score=22.46 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=34.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q psy15784 161 QAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGN 209 (231)
Q Consensus 161 ~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~ 209 (231)
..|..||..+.-.-....+|+..|..|...||..+.-+..-...+....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466777777777888888888888888888888887777766665543
No 24
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=60.68 E-value=38 Score=21.04 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=39.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q psy15784 166 LESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMY 218 (231)
Q Consensus 166 ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~ 218 (231)
-...+..|.....+|..|..+=|..|..=..-+....+++..+...+..|.+.
T Consensus 4 ~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~ 56 (60)
T cd00193 4 RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKR 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777888888888877777777777777888888777777777543
No 25
>PRK04325 hypothetical protein; Provisional
Probab=56.85 E-value=60 Score=22.12 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=36.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH
Q psy15784 163 IRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSD 207 (231)
Q Consensus 163 i~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~ 207 (231)
|..||..+.-.-....+|+..|..|+..|+.....+..-.+.+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888889999999888888777766665544
No 26
>KOG3065|consensus
Probab=56.61 E-value=49 Score=28.61 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15784 169 DIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAA 216 (231)
Q Consensus 169 ~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~ 216 (231)
.+.+-...-.-...+..+||+.|++||.|+.........|...|..-.
T Consensus 87 ~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~ 134 (273)
T KOG3065|consen 87 LAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELK 134 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 344445555666778889999999999999999999988888875443
No 27
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=56.09 E-value=27 Score=21.58 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=20.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhH
Q psy15784 165 QLESDIRDVNQIFKELGAMVHDQGE 189 (231)
Q Consensus 165 ~ie~~i~el~~if~~l~~lV~~Qg~ 189 (231)
.|-..+.++++++.+|-.++.+|-.
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~k 29 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIK 29 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888899999999888888744
No 28
>PRK00295 hypothetical protein; Provisional
Probab=52.84 E-value=67 Score=21.49 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=37.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH
Q psy15784 163 IRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDG 208 (231)
Q Consensus 163 i~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a 208 (231)
|..||..+.-.-....+|+..|..|+..||.....+..-...+...
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888888888888889999999999988887777766655543
No 29
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=47.87 E-value=1.9e+02 Score=25.13 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15784 152 NLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV 220 (231)
Q Consensus 152 ~~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~ 220 (231)
....|..=++.|.+|..-..+|..+..+=+.+|.-=..-|+++..|+.+|......|..+=+.+.+...
T Consensus 193 r~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~ 261 (283)
T COG5325 193 RDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRF 261 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchh
Confidence 344677778899999999999999999999999999999999999999999999999999888776654
No 30
>PRK02793 phi X174 lysis protein; Provisional
Probab=46.28 E-value=91 Score=21.10 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=34.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH
Q psy15784 161 QAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSD 207 (231)
Q Consensus 161 ~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~ 207 (231)
..|..||..+.-.-....+|+..|..|...||.....+..-.+.+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667777777777778888888888888888888777666555543
No 31
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=45.39 E-value=71 Score=26.97 Aligned_cols=52 Identities=12% Similarity=0.175 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcCCcceeEec
Q psy15784 177 FKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTVSRILPLKVLV 230 (231)
Q Consensus 177 f~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~~rk~~~~lli 230 (231)
-.-++..+.+-..+|+..+..++.....+..+...|..- +.++.+|+.|++|
T Consensus 183 s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~--~~~~~~~~~~~~i 234 (251)
T PF09753_consen 183 SLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEH--SSKSWGCWTWLMI 234 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcccHHHHHHH
Confidence 344677888899999999999999999999888887542 2234446666544
No 32
>PRK00736 hypothetical protein; Provisional
Probab=45.33 E-value=91 Score=20.84 Aligned_cols=45 Identities=11% Similarity=0.259 Sum_probs=35.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH
Q psy15784 163 IRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSD 207 (231)
Q Consensus 163 i~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~ 207 (231)
|..||..+.-.-....+|+..|..|...||....-+..-.+.+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888888888888888777766665544
No 33
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=44.36 E-value=2.8e+02 Score=26.20 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH
Q psy15784 154 REAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSD 207 (231)
Q Consensus 154 ~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~ 207 (231)
..+..=...+.+|...+.++..++.+++.-+.+|...++.|..++.....-++.
T Consensus 433 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 433 TLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677889999999999999999999999999999998888776555444
No 34
>PRK09793 methyl-accepting protein IV; Provisional
Probab=42.32 E-value=3e+02 Score=25.86 Aligned_cols=55 Identities=15% Similarity=0.290 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH
Q psy15784 154 REAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDG 208 (231)
Q Consensus 154 ~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a 208 (231)
..+.+=...+..|...+.++...+.+++..+.+|...++.|..++.....-++..
T Consensus 429 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~ 483 (533)
T PRK09793 429 KLVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQN 483 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556678889999999999999999999999999999888877665544443
No 35
>PRK04406 hypothetical protein; Provisional
Probab=39.69 E-value=1.2e+02 Score=20.70 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=34.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH
Q psy15784 161 QAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSD 207 (231)
Q Consensus 161 ~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~ 207 (231)
..|..||..+.-.-....+|+..|..|...||.....+..-.+.+..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667777777777778888888888888888888777666555543
No 36
>PHA02675 ORF104 fusion protein; Provisional
Probab=39.16 E-value=1.4e+02 Score=21.05 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHH
Q psy15784 172 DVNQIFKELGAMVHDQGELIDSIEAHVERTEAYV 205 (231)
Q Consensus 172 el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v 205 (231)
.|-..|+.+...-..=++.|++.|.+.+....++
T Consensus 41 ~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~M 74 (90)
T PHA02675 41 SLLDSYKTITDCCRETGARLDRLERHLETLREAL 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3336677777777778889999888877665443
No 37
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=38.36 E-value=3.4e+02 Score=25.44 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHH
Q psy15784 155 EAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVS 206 (231)
Q Consensus 155 ~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~ 206 (231)
.+.+=.+.+..|...+.++...+.+++..+.+|...++.|..+++.....++
T Consensus 432 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~ 483 (553)
T PRK15048 432 LVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQ 483 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566788899999999999999999999999999999888877666555
No 38
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=37.79 E-value=1.8e+02 Score=22.08 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=18.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q psy15784 162 AIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAH 197 (231)
Q Consensus 162 ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~n 197 (231)
++..+..++..++.-+..+..+|..=+..|+.||+|
T Consensus 90 eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~ 125 (126)
T PF07889_consen 90 EVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEK 125 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444444444444444445666666654
No 39
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=36.59 E-value=2.1e+02 Score=22.58 Aligned_cols=61 Identities=13% Similarity=0.333 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy15784 154 REAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKD 214 (231)
Q Consensus 154 ~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~ 214 (231)
..+.+-...+..|...+.++...+.+++.-+.+|...+..|...+......++.....+..
T Consensus 128 ~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~ 188 (213)
T PF00015_consen 128 ESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQISASSEE 188 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556677788888888888889999999999888888888776666655555444433
No 40
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=36.42 E-value=1.2e+02 Score=19.61 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=42.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15784 163 IRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAA 216 (231)
Q Consensus 163 i~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~ 216 (231)
|..-...+.+..++=.+...-...|++.|.++...+..+..++..+..-|..-.
T Consensus 10 L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 10 LQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444445555666666777777889999999999999999999999988886544
No 41
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=34.99 E-value=1.2e+02 Score=19.04 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=30.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15784 163 IRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAA 216 (231)
Q Consensus 163 i~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~ 216 (231)
+.+-...+..|.....++..|..+=|..|+.=...+.....++..+...+..|.
T Consensus 7 ~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~ 60 (66)
T smart00397 7 EEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKAN 60 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555555555555555554
No 42
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=34.34 E-value=67 Score=24.19 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=27.0
Q ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy15784 151 INLREAEEQEQAIRQLESDIRDVNQIFKELG 181 (231)
Q Consensus 151 ~~~~~i~eR~~ei~~ie~~i~el~~if~~l~ 181 (231)
..+..+=|+.+++..|..+|.||..||+..-
T Consensus 86 t~LellGEK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 86 TLLELLGEKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999998753
No 43
>KOG0570|consensus
Probab=33.45 E-value=2.8e+02 Score=22.94 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh------hhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15784 153 LREAEEQEQAIRQLESDIRDVNQIFKELGAMVHD------QGELIDSIEAHVERTEAYVSDGNTQLKDAA 216 (231)
Q Consensus 153 ~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~------Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~ 216 (231)
+-.|--|.-+ .-++.|.+|+.||..|++|+.+ -...+--.|..++.-.+-++.-.++++.+.
T Consensus 93 L~~ILi~~P~--~~e~Kvedi~tifvnlHHLiNeyRPhQaResLi~lmE~Qi~~~~~~ve~~kk~~~~~~ 160 (223)
T KOG0570|consen 93 LLDILIRAPD--MREEKVEDIRTIFVNLHHLINEYRPHQARESLIMLMERQIEQRSDIVEDFKKHLRQVR 160 (223)
T ss_pred HHHHHHhCch--hHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445444 6788899999999999999875 234555556666655555555555555543
No 44
>PRK02119 hypothetical protein; Provisional
Probab=33.17 E-value=1.6e+02 Score=20.01 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=35.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH
Q psy15784 161 QAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSD 207 (231)
Q Consensus 161 ~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~ 207 (231)
..|..||..+.-.-....+|+..|..|...||.....+..-.+.+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777788888888888888888888777666555543
No 45
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.70 E-value=1.1e+02 Score=21.30 Aligned_cols=30 Identities=33% Similarity=0.559 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy15784 155 EAEEQEQAIRQLESDIRDVNQIFKELGAMV 184 (231)
Q Consensus 155 ~i~eR~~ei~~ie~~i~el~~if~~l~~lV 184 (231)
-+++...+|..|+..+.-..++..++..+|
T Consensus 53 s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 53 SVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467778888888888888888888887765
No 46
>PHA03046 Hypothetical protein; Provisional
Probab=30.32 E-value=2.5e+02 Score=21.50 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHH
Q psy15784 155 EAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYV 205 (231)
Q Consensus 155 ~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v 205 (231)
.|..-.-+|+.+.--+.-|-.+|+.....-..-+..|+++|.+++....++
T Consensus 78 FI~~d~~~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~M 128 (142)
T PHA03046 78 FIHKDEMDIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNM 128 (142)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556678888888888899999999999999999999999988766544
No 47
>KOG1962|consensus
Probab=30.10 E-value=3.3e+02 Score=22.75 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15784 27 TKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQKERLADDFSTALNAFQDVQKL 91 (231)
Q Consensus 27 lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~r~~k~q~~~L~~~f~~~l~~fq~~q~~ 91 (231)
+..+......+...+-.+++..-+.|+... ...-..+-|.+.+.+++-.++.+|+..|..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~-----~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQ-----KKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555432 122234445566666666666666666554
No 48
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=28.93 E-value=3.6e+02 Score=24.28 Aligned_cols=63 Identities=11% Similarity=0.171 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15784 29 SQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQKERLADDFSTALNAFQDVQKLAHKK 95 (231)
Q Consensus 29 ~~l~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~r~~k~q~~~L~~~f~~~l~~fq~~q~~~~~~ 95 (231)
++++.+...+...+..++..|+.|..-- +..-.++. +--..|.+.|...+.+|+..+..+.+.
T Consensus 223 eqm~~~~~~I~~~~~~~~~~L~kl~~~i---~~~lekI~-sREk~iN~qle~l~~eYr~~~~~ls~~ 285 (359)
T PF10498_consen 223 EQMKQHKKSIESALPETKSQLDKLQQDI---SKTLEKIE-SREKYINNQLEPLIQEYRSAQDELSEV 285 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5566777777788888888888776621 01112221 122344555666666666655555443
No 49
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=25.92 E-value=2.9e+02 Score=20.74 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15784 173 VNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAA 216 (231)
Q Consensus 173 l~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~ 216 (231)
|.+.|..|..|+..=..-.+.+|..--.|...+..|..+|++..
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLa 45 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLA 45 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 45667777777775444456788888888899999999888753
No 50
>PRK00846 hypothetical protein; Provisional
Probab=22.72 E-value=2.7e+02 Score=19.24 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=32.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH
Q psy15784 162 AIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDG 208 (231)
Q Consensus 162 ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a 208 (231)
.|..||..+.-.-....+|+..|..|...||....-+..-.+..+.+
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666666667777777778888888888777766666555543
No 51
>KOG0972|consensus
Probab=22.41 E-value=3.1e+02 Score=24.12 Aligned_cols=60 Identities=10% Similarity=0.225 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15784 28 KSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQKERLADDFSTALNAFQDVQKL 91 (231)
Q Consensus 28 r~~l~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~r~~k~q~~~L~~~f~~~l~~fq~~q~~ 91 (231)
=++++.+...+-..+..+...|+.|.+.- +.+-.++ ...-..|.+.+..++++|+..+..
T Consensus 229 ~~QM~s~~~nIe~~~~~~~~~Ldklh~ei---t~~LEkI-~SREK~lNnqL~~l~q~fr~a~~~ 288 (384)
T KOG0972|consen 229 LEQMNSMHKNIEQKVGNVGPYLDKLHKEI---TKALEKI-ASREKSLNNQLASLMQKFRRATDT 288 (384)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666665410 0000111 011224455566666666655543
No 52
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.54 E-value=2.4e+02 Score=18.20 Aligned_cols=18 Identities=11% Similarity=0.634 Sum_probs=9.0
Q ss_pred HHHHHHHHhhHHHHHHHH
Q psy15784 160 EQAIRQLESDIRDVNQIF 177 (231)
Q Consensus 160 ~~ei~~ie~~i~el~~if 177 (231)
.++|..|++.+.+|-.||
T Consensus 27 ~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 27 SESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554444
No 53
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.50 E-value=1.9e+02 Score=21.02 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15784 70 QKERLADDFSTALNAFQDV 88 (231)
Q Consensus 70 q~~~L~~~f~~~l~~fq~~ 88 (231)
....+..++..+-.+++.+
T Consensus 73 ~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 73 ELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 3334444444444444433
No 54
>TIGR03090 SASP_tlp small, acid-soluble spore protein tlp. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. Although previously designated tlp (thioredoxin-like protein), the B. subtilis protein was shown to be a minor small acid-soluble spore protein SASP, unique to spores. The motif E[VIL]XDE near the C-terminus probably represents at a germination protease cleavage site.
Probab=21.28 E-value=2.2e+02 Score=19.34 Aligned_cols=26 Identities=8% Similarity=0.262 Sum_probs=15.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy15784 190 LIDSIEAHVERTEAYVSDGNTQLKDA 215 (231)
Q Consensus 190 ~id~Ie~nv~~a~~~v~~a~~~l~~A 215 (231)
-|+.|..+|.++.+|+..|...|..+
T Consensus 9 NVEkLQ~mi~nTieN~~eAee~l~~~ 34 (70)
T TIGR03090 9 NVEKLQQMIDNTIENMEEANEYIEAH 34 (70)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666666666655533
No 55
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.85 E-value=4.1e+02 Score=20.70 Aligned_cols=34 Identities=9% Similarity=0.254 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15784 23 DSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTP 56 (231)
Q Consensus 23 d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~ 56 (231)
+...+...+..+..++..+-..++..-.+|..+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666777777777777666666666666554
No 56
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=20.82 E-value=3.5e+02 Score=19.80 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=26.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHH
Q psy15784 162 AIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTE 202 (231)
Q Consensus 162 ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~ 202 (231)
.|..|.+.+.-.-+=...|..-+..||+.++.|..-+....
T Consensus 54 qI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~in 94 (102)
T PF01519_consen 54 QINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSIN 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555556666666688888888876655443
No 57
>PF15205 PLAC9: Placenta-specific protein 9
Probab=20.65 E-value=1.9e+02 Score=19.46 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=14.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q psy15784 190 LIDSIEAHVERTEAYVSDGNTQL 212 (231)
Q Consensus 190 ~id~Ie~nv~~a~~~v~~a~~~l 212 (231)
-+|.||.-|+.+.++.+.-++-|
T Consensus 26 RLdviEe~veKTVEhLeaEvk~L 48 (74)
T PF15205_consen 26 RLDVIEETVEKTVEHLEAEVKGL 48 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666555444
No 58
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=20.37 E-value=5.3e+02 Score=22.57 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH
Q psy15784 173 VNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSD 207 (231)
Q Consensus 173 l~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~ 207 (231)
.+.+|..+..=|..-.+.|..|..-++.+...|++
T Consensus 34 ~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~ 68 (297)
T PF11945_consen 34 SNDIFSRISARVERNRERLQAIQQRIEVAQAKIEK 68 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888877777776663
Done!