Query psy15784
Match_columns 231
No_of_seqs 139 out of 1154
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 21:15:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 1.7E-38 5.9E-43 270.9 8.7 214 2-227 41-267 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 1.7E-33 5.8E-38 241.7 7.9 207 2-222 54-279 (279)
3 1jth_B Syntaxin 1A; coiled-coi 99.9 3.3E-26 1.1E-30 159.4 10.5 75 153-227 2-77 (77)
4 3hd7_B Syntaxin-1A; membrane p 99.9 1.3E-26 4.5E-31 171.7 7.7 83 148-230 8-91 (109)
5 1fio_A SSO1 protein; four heli 99.9 1E-25 3.4E-30 183.7 12.5 171 1-188 14-196 (196)
6 2nps_B Syntaxin 13, vesicle-as 99.9 3E-24 1E-28 147.1 9.9 69 157-225 2-71 (71)
7 1sfc_B Protein (syntaxin 1A), 99.9 2.7E-23 9.1E-28 146.6 10.0 75 148-222 8-83 (83)
8 3b5n_B Protein SSO1; snare com 99.9 5.6E-23 1.9E-27 139.9 10.8 68 153-220 2-69 (69)
9 1n7s_B Syntaxin 1A; neuronal s 99.9 1.8E-21 6.1E-26 132.1 8.7 65 152-216 3-67 (68)
10 1gl2_B Syntaxin 7; membrane pr 99.8 3E-21 1E-25 129.8 8.1 63 155-217 3-65 (65)
11 3c98_B Syntaxin-1A; protein co 99.8 2.4E-21 8.1E-26 164.3 6.7 214 3-227 54-279 (279)
12 2dnx_A Syntaxin-12; snare, HAB 99.7 5.4E-17 1.9E-21 123.6 12.4 103 1-103 19-125 (130)
13 1s94_A S-syntaxin; three helix 99.4 6.7E-13 2.3E-17 106.4 6.4 108 3-110 50-167 (180)
14 1ez3_A Syntaxin-1A; three heli 99.2 6.8E-11 2.3E-15 89.2 9.9 91 10-100 30-126 (127)
15 1hs7_A Syntaxin VAM3; UP-and-D 99.1 2.1E-10 7.2E-15 82.0 6.5 74 10-100 21-95 (97)
16 1n7s_D SNAP-25A; neuronal snar 96.8 0.014 4.9E-07 38.2 9.5 55 160-214 9-63 (66)
17 1gl2_D Syntaxin 8, vesicle tra 96.7 0.0076 2.6E-07 39.4 7.3 59 156-214 4-62 (65)
18 2nps_D Syntaxin-6; vesicle fus 96.7 0.0082 2.8E-07 41.2 7.7 65 155-219 13-77 (82)
19 1sfc_D Protein (SNAP-25B), pro 96.5 0.032 1.1E-06 38.6 10.0 57 158-214 26-82 (87)
20 1l4a_D S-SNAP25 fusion protein 96.1 0.037 1.3E-06 38.4 8.4 55 160-214 29-83 (87)
21 1nhl_A Synaptosomal-associated 95.9 0.064 2.2E-06 33.7 8.1 44 170-213 9-52 (54)
22 3b5n_D Protein transport prote 95.9 0.093 3.2E-06 34.1 9.0 54 160-213 9-62 (64)
23 3b5n_C Protein transport prote 95.1 0.41 1.4E-05 31.6 10.0 39 181-219 32-70 (70)
24 1n7s_C SNAP-25A; neuronal snar 94.9 0.51 1.8E-05 31.9 10.4 54 161-214 23-76 (79)
25 1l4a_C S-SNAP25 fusion protein 92.3 0.59 2E-05 31.9 7.0 47 166-212 32-78 (83)
26 2nps_B Syntaxin 13, vesicle-as 84.6 6.3 0.00022 25.6 8.3 63 155-217 7-69 (71)
27 3hd7_B Syntaxin-1A; membrane p 80.9 12 0.00043 26.4 11.7 69 151-219 18-86 (109)
28 3hd7_A Vesicle-associated memb 77.8 7.1 0.00024 26.8 6.2 43 161-203 5-47 (91)
29 1gl2_C VTI1B, vesicle transpor 76.4 12 0.00042 23.8 8.6 44 170-213 18-61 (65)
30 1jth_B Syntaxin 1A; coiled-coi 74.2 16 0.00054 24.0 9.7 65 153-217 9-73 (77)
31 1n7s_B Syntaxin 1A; neuronal s 69.7 19 0.00065 23.0 9.7 54 155-208 13-66 (68)
32 3n27_A Fusion glycoprotein F0, 62.3 27 0.00093 23.2 6.0 61 155-217 14-74 (80)
33 1sfc_B Protein (syntaxin 1A), 60.7 34 0.0012 22.7 8.7 61 153-213 20-80 (83)
34 1gl2_B Syntaxin 7; membrane pr 60.1 30 0.001 21.9 8.3 55 155-209 10-64 (65)
35 2akf_A Coronin-1A; coiled coil 59.4 14 0.00049 19.6 3.4 28 165-199 3-30 (32)
36 3swy_A Cyclic nucleotide-gated 53.4 33 0.0011 20.4 4.8 29 68-96 11-39 (46)
37 3b5n_B Protein SSO1; snare com 47.1 53 0.0018 20.9 10.4 57 154-210 10-66 (69)
38 3efg_A Protein SLYX homolog; x 45.0 64 0.0022 21.3 6.1 46 162-207 15-60 (78)
39 3p8c_F ABL interactor 2; actin 44.7 1E+02 0.0034 23.4 7.5 48 158-205 51-98 (159)
40 3swf_A CGMP-gated cation chann 44.5 46 0.0016 21.9 4.8 30 68-97 13-42 (74)
41 1l4a_A Synaptobrevin; snare, s 43.0 62 0.0021 21.3 5.5 27 171-197 25-51 (80)
42 1n7s_A Vesicle-associated memb 42.3 61 0.0021 20.2 8.3 41 161-201 4-44 (63)
43 1qu7_A Methyl-accepting chemot 39.3 1.4E+02 0.0048 23.6 8.9 53 155-207 141-193 (227)
44 1urq_A M-tomosyn isoform; tran 38.6 73 0.0025 20.1 7.5 38 163-200 6-43 (63)
45 3fx7_A Putative uncharacterize 38.1 96 0.0033 21.3 8.9 76 18-101 5-80 (94)
46 1sfc_A VAMP 2, protein (synapt 37.0 99 0.0034 21.1 9.7 39 162-200 31-69 (96)
47 2beq_A E2 glycoprotein; viral 36.3 60 0.0021 18.4 4.1 32 164-195 2-33 (38)
48 3b5n_A Synaptobrevin homolog 1 35.9 77 0.0026 19.6 8.1 39 162-200 3-41 (61)
49 1gl2_A Endobrevin; membrane pr 34.5 86 0.0029 19.7 7.6 37 163-199 11-47 (65)
50 3zx6_A HAMP, methyl-accepting 33.9 2.1E+02 0.0071 23.9 10.9 54 155-208 221-274 (341)
51 3ajm_A Programmed cell death p 24.5 1.4E+02 0.0047 23.7 5.4 23 70-92 152-174 (213)
52 2jqq_A Conserved oligomeric go 20.6 3.1E+02 0.011 21.4 10.9 69 16-98 117-185 (204)
53 2c5k_T Syntaxin TLG1, T-snare 20.2 2.1E+02 0.0072 19.4 9.0 71 10-85 21-91 (95)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=100.00 E-value=1.7e-38 Score=270.91 Aligned_cols=214 Identities=22% Similarity=0.295 Sum_probs=157.8
Q ss_pred chhhhhHH----HHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCcHHHHHHHHHH
Q psy15784 2 VSNILRIS----SMKRMVNL-LGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTP-----LPSSPSEQRQCKMQK 71 (231)
Q Consensus 2 ~~ni~~i~----~l~k~~~~-lgt~~d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~-----~~~~~~~~r~~k~q~ 71 (231)
+.+|.+|+ +|+++... +++|.+++.++.+|+.++.+++.+++.|+..|+.|.... ..+++++.|++++|+
T Consensus 41 ~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~~e~Rirk~q~ 120 (267)
T 1dn1_B 41 RGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH 120 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Confidence 45666766 77887654 555777779999999999999999999999999997741 124567789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccCCccccCccchhhhhhh-hhhhHHHHH-HHHHh
Q psy15784 72 ERLADDFSTALNAFQDVQKLAHKKESDQIKKTKVISKLPPPPGRQAVSGEEFGDRTQDQLIELQ-DNGSQQLQQ-QRQQD 149 (231)
Q Consensus 72 ~~L~~~f~~~l~~fq~~q~~~~~~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~q~q~-q~~~~ 149 (231)
..|+++|+++|..|+.+|..|++++|.++.|++.+.++..++ + +.+.++..| ..+|.+... +...+
T Consensus 121 ~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~td-e-----------eie~~ie~g~~~~f~q~~l~~~~~~ 188 (267)
T 1dn1_B 121 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTS-E-----------ELEDMLESGNPAIFASGIIMDSSIS 188 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH-H-----------HHHHHHHTCSSCTTTTTCCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCH-H-----------HHHHHHhCCcHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999998743221 1 122222211 122322100 00345
Q ss_pred hHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-cCCccee
Q psy15784 150 FINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV-SRILPLK 227 (231)
Q Consensus 150 ~~~~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~-~rk~~~~ 227 (231)
+..+..|++|+++|.+|+++|.+||+||.|||.||++||++||+||+||+.|..||+.|..+|.+|.+||+ +|||+||
T Consensus 189 ~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~~ 267 (267)
T 1dn1_B 189 KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 267 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999 9999997
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.98 E-value=1.7e-33 Score=241.67 Aligned_cols=207 Identities=20% Similarity=0.312 Sum_probs=145.5
Q ss_pred chhhhhHH----HHHHHH-HHcCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---------CCCcH-HH
Q psy15784 2 VSNILRIS----SMKRMV-NLLGTAQDSS--DTKSQLYQIQHYTQQLAKDTNHILKQLNDTPL---------PSSPS-EQ 64 (231)
Q Consensus 2 ~~ni~~i~----~l~k~~-~~lgt~~d~~--~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~~---------~~~~~-~~ 64 (231)
+.+|++|+ .|.++. ..+|+|.++. .++.+|+.++..|+.+++.|+..|+.|..... ..+++ +.
T Consensus 54 ~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~~~e~ 133 (279)
T 2xhe_B 54 RDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDL 133 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCchHHH
Confidence 45666666 777876 5689898887 89999999999999999999999999987310 12223 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccCCccccCccchhhhhhh-hhhhHHHH
Q psy15784 65 RQCKMQKERLADDFSTALNAFQDVQKLAHKKESDQIKKTKVISKLPPPPGRQAVSGEEFGDRTQDQLIELQ-DNGSQQLQ 143 (231)
Q Consensus 65 r~~k~q~~~L~~~f~~~l~~fq~~q~~~~~~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~q~q 143 (231)
|++++++.+|+++|+.++..|+.+|..|.+++|.++.|++.+.++..++ + +.++++..+ ...|.+.
T Consensus 134 r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~~~~~~-e-----------e~~~~~e~g~~~~f~q~- 200 (279)
T 2xhe_B 134 RIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSD-D-----------AIQKVIEHGTEGIFSGM- 200 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSCCCCSS-T-----------THHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH-H-----------HHHHHHhCCchHHHHHH-
Confidence 9999999999999999999999999999999999988877665432111 1 223343332 1234331
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-cC
Q psy15784 144 QQRQQDFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV-SR 222 (231)
Q Consensus 144 ~q~~~~~~~~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~-~r 222 (231)
+....+..+..|++|+++|.+|+++|.+||+||.|||.||++||++||+||+||+.|..||+.|+.+|.+|.+||+ +|
T Consensus 201 -~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 201 -RLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279 (279)
T ss_dssp ----------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 1123455667899999999999999999999999999999999999999999999999999999999999999999 75
No 3
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.93 E-value=3.3e-26 Score=159.38 Aligned_cols=75 Identities=33% Similarity=0.539 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-cCCccee
Q psy15784 153 LREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV-SRILPLK 227 (231)
Q Consensus 153 ~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~-~rk~~~~ 227 (231)
+..+++|+++|.+|+++|.|||+||.|||.||++||++||+||+||+.|..||+.|..+|.+|.+|++ +|||+||
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999 9999887
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.93 E-value=1.3e-26 Score=171.66 Aligned_cols=83 Identities=30% Similarity=0.496 Sum_probs=78.6
Q ss_pred HhhHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-cCCcce
Q psy15784 148 QDFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV-SRILPL 226 (231)
Q Consensus 148 ~~~~~~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~-~rk~~~ 226 (231)
.++..+.++++|+++|.+||++|.|||+||.|||.||++||++||+||+||++|.+||+.|+.+|.+|.+||| +|||+|
T Consensus 8 ~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~ 87 (109)
T 3hd7_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 87 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcce
Confidence 4667889999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eEec
Q psy15784 227 KVLV 230 (231)
Q Consensus 227 ~lli 230 (231)
||++
T Consensus 88 i~l~ 91 (109)
T 3hd7_B 88 MIII 91 (109)
T ss_dssp HHHH
T ss_pred ehHH
Confidence 8865
No 5
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.93 E-value=1e-25 Score=183.66 Aligned_cols=171 Identities=13% Similarity=0.196 Sum_probs=134.3
Q ss_pred CchhhhhHH----HHHHHHHH-cCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHH
Q psy15784 1 MVSNILRIS----SMKRMVNL-LGTAQDSS--DTKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQKER 73 (231)
Q Consensus 1 i~~ni~~i~----~l~k~~~~-lgt~~d~~--~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~r~~k~q~~~ 73 (231)
|+.+|++|+ .|.+++.. +++|.++. .++.+|+.++.+++.+++.|+..|+.|.... .+.|++++++.+
T Consensus 14 i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~-----~~~r~~k~~~~~ 88 (196)
T 1fio_A 14 INRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG-----IHDTNKQAQAEN 88 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----hhhhHHHHHHHH
Confidence 356777777 78888766 55565543 7999999999999999999999999999864 135899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccCCccccCccchhhhh-h-hhhhhHHHHHH--H-HH
Q psy15784 74 LADDFSTALNAFQDVQKLAHKKESDQIKKTKVISKLPPPPGRQAVSGEEFGDRTQDQLIE-L-QDNGSQQLQQQ--R-QQ 148 (231)
Q Consensus 74 L~~~f~~~l~~fq~~q~~~~~~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~q~q~q--~-~~ 148 (231)
|+++|++++.+|+.+|..|.+++|.++.|++.++++..|+++ .+.++. + ...+|++...+ . ..
T Consensus 89 L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~~~~e------------~~~~~~~~~~~~~f~~~~~~~~~~~~ 156 (196)
T 1fio_A 89 SRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDE------------VEAAISDVGGQQIFSQALLNANRRGE 156 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHH------------HHHHTSHHHHHHHHHHHTC------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH------------HHHHHHcCCchhHHHHHHHhccchHH
Confidence 999999999999999999999999999999998864322221 112221 1 12344432111 1 34
Q ss_pred hhHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q psy15784 149 DFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQG 188 (231)
Q Consensus 149 ~~~~~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg 188 (231)
+...+..|++||++|.+||++|.|||+||.|||.||++||
T Consensus 157 ~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 157 AKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5667889999999999999999999999999999999998
No 6
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.91 E-value=3e-24 Score=147.06 Aligned_cols=69 Identities=57% Similarity=0.744 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-cCCcc
Q psy15784 157 EEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV-SRILP 225 (231)
Q Consensus 157 ~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~-~rk~~ 225 (231)
++|+++|.+|+++|.+|++||.|||.||++||++||+||+||+.|..||+.|..+|.+|.+|++ +|||+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999 98885
No 7
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.89 E-value=2.7e-23 Score=146.56 Aligned_cols=75 Identities=33% Similarity=0.525 Sum_probs=70.0
Q ss_pred HhhHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-cC
Q psy15784 148 QDFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV-SR 222 (231)
Q Consensus 148 ~~~~~~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~-~r 222 (231)
.++..+..+++|+++|.+|+++|.+||+||.|||.||++||++||+||+||+.|..||+.|..+|.+|.+|++ +|
T Consensus 8 ~~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 4566788999999999999999999999999999999999999999999999999999999999999999999 65
No 8
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.89 E-value=5.6e-23 Score=139.93 Aligned_cols=68 Identities=25% Similarity=0.410 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15784 153 LREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV 220 (231)
Q Consensus 153 ~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~ 220 (231)
+..+++|+++|.+|+++|.+|++||.||+.||.+||++||+||+||+.|..||++|..+|.+|.+|||
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999999999999999999999999999999999999999999986
No 9
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.85 E-value=1.8e-21 Score=132.13 Aligned_cols=65 Identities=35% Similarity=0.582 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15784 152 NLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAA 216 (231)
Q Consensus 152 ~~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~ 216 (231)
.+..+++|+++|.+|+++|.+|++||.|||.||.+||++||+||+||+.|..||++|..+|.+|.
T Consensus 3 ~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 3 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999996
No 10
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.85 E-value=3e-21 Score=129.78 Aligned_cols=63 Identities=56% Similarity=0.826 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15784 155 EAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAM 217 (231)
Q Consensus 155 ~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~ 217 (231)
.+++|+++|.+|+++|.+|++||.|||.||++||++||+||+||+.|..||++|..+|.+|.+
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 588999999999999999999999999999999999999999999999999999999999964
No 11
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.83 E-value=2.4e-21 Score=164.33 Aligned_cols=214 Identities=22% Similarity=0.301 Sum_probs=147.3
Q ss_pred hhhhhHH----HHHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCcHHHHHHHHHHH
Q psy15784 3 SNILRIS----SMKRMV-NLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTP-----LPSSPSEQRQCKMQKE 72 (231)
Q Consensus 3 ~ni~~i~----~l~k~~-~~lgt~~d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~-----~~~~~~~~r~~k~q~~ 72 (231)
..|..|. +|.+.. ..+.++.+.......++.++.+++.++..+...++.|..+. ......+.+...+|..
T Consensus 54 ~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~i~~~~~qtn 133 (279)
T 3c98_B 54 GFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHS 133 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Confidence 3445554 555544 56778888889999999999999999999999988887641 1234567889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccCCccccCccchhhhhhhhhhhH-HHHHHHHHhhH
Q psy15784 73 RLADDFSTALNAFQDVQKLAHKKESDQIKKTKVISKLPPPPGRQAVSGEEFGDRTQDQLIELQDNGSQ-QLQQQRQQDFI 151 (231)
Q Consensus 73 ~L~~~f~~~l~~fq~~q~~~~~~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-q~q~q~~~~~~ 151 (231)
.|...|......|...+..|...++..+.+....++... .+.... ..........+. ...........
T Consensus 134 ~La~n~a~~~a~~~~~~~~~~~vva~evr~la~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 202 (279)
T 3c98_B 134 TLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTT-TSEELE----------DMLESGNPAIFASGIIMDSSISKQ 202 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-CHHHHH----------HHHHSCCTTSSTTTSCSCSSSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-cchHHH----------HHHHhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888777665321 111000 000000000000 00000023345
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-cCCccee
Q psy15784 152 NLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTV-SRILPLK 227 (231)
Q Consensus 152 ~~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q~-~rk~~~~ 227 (231)
.+..+++|+..|..|+.+|.+|+++|.+|+.+|.+||+++|.|++||+.+.++|+.|..+|.+|.+|++ +|||+||
T Consensus 203 ~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk~i 279 (279)
T 3c98_B 203 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 279 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 567899999999999999999999999999999999999999999999999999999999999999999 9999986
No 12
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.4e-17 Score=123.62 Aligned_cols=103 Identities=52% Similarity=0.724 Sum_probs=95.0
Q ss_pred CchhhhhHH----HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHH
Q psy15784 1 MVSNILRIS----SMKRMVNLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQKERLAD 76 (231)
Q Consensus 1 i~~ni~~i~----~l~k~~~~lgt~~d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~r~~k~q~~~L~~ 76 (231)
|+.||++|+ .|+++++.|||++|+++||++|+.+...++.+++.+...|++|..++...+++++|.++.+.++|.+
T Consensus 19 is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~~k~q~~KL~~ 98 (130)
T 2dnx_A 19 CSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMN 98 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHH
Confidence 578999999 9999999999999999999999999999999999999999999998633456778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy15784 77 DFSTALNAFQDVQKLAHKKESDQIKKT 103 (231)
Q Consensus 77 ~f~~~l~~fq~~q~~~~~~~k~~~~r~ 103 (231)
+|..++++|+.+|+.|.+++|..+.++
T Consensus 99 dF~~~L~~FQ~~Qr~~aekek~~~~~a 125 (130)
T 2dnx_A 99 DFSAALNNFQAVQRRVSEKEKESIARS 125 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999776643
No 13
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.36 E-value=6.7e-13 Score=106.39 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=75.6
Q ss_pred hhhhhHH----HHHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----C-CCCCcHHHHHHHHHHH
Q psy15784 3 SNILRIS----SMKRMV-NLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDT----P-LPSSPSEQRQCKMQKE 72 (231)
Q Consensus 3 ~ni~~i~----~l~k~~-~~lgt~~d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~----~-~~~~~~~~r~~k~q~~ 72 (231)
..|..|. .|.++. ..|+++.+...++.+|+.++.+++.+++.|+..|+.|... + ...++++.|++++|+.
T Consensus 50 ~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~ 129 (180)
T 1s94_A 50 AMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQYS 129 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 4455555 566654 5588898888999999999999999999999999999973 1 1234567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhcCCC
Q psy15784 73 RLADDFSTALNAFQDVQKLAHKKESDQIKKTKVISKLP 110 (231)
Q Consensus 73 ~L~~~f~~~l~~fq~~q~~~~~~~k~~~~r~~~~~~~~ 110 (231)
.|.++|+++|.+|+.+|..|++++|.++.|++.++++.
T Consensus 130 ~L~~kf~~~m~~yq~~q~~y~~~~K~~i~Rq~~I~~~~ 167 (180)
T 1s94_A 130 TISRKFVEVMSDYNTTQIDYRDRCKARIKRQMEITGRT 167 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999998754
No 14
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.22 E-value=6.8e-11 Score=89.20 Aligned_cols=91 Identities=20% Similarity=0.287 Sum_probs=78.2
Q ss_pred HHHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCcHHHHHHHHHHHHHHHHHHHHHH
Q psy15784 10 SMKRMV-NLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTP-----LPSSPSEQRQCKMQKERLADDFSTALN 83 (231)
Q Consensus 10 ~l~k~~-~~lgt~~d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~-----~~~~~~~~r~~k~q~~~L~~~f~~~l~ 83 (231)
.|.++. ..|.+|.....++.+|+.++.+++.+++.|+..|+.|.... ..+++++.|++++|+..|.+.|+++|.
T Consensus 30 ~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~ 109 (127)
T 1ez3_A 30 EVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMS 109 (127)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433 55778888889999999999999999999999999998731 124567889999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHH
Q psy15784 84 AFQDVQKLAHKKESDQI 100 (231)
Q Consensus 84 ~fq~~q~~~~~~~k~~~ 100 (231)
+|+.+|..|+++++.++
T Consensus 110 ~y~~~q~~yre~~k~ri 126 (127)
T 1ez3_A 110 EYNATQSDYRERCKGRI 126 (127)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999998654
No 15
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.08 E-value=2.1e-10 Score=81.99 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=65.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15784 10 SMKRMVNLLGTAQDSSDTKSQLY-QIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQKERLADDFSTALNAFQDV 88 (231)
Q Consensus 10 ~l~k~~~~lgt~~d~~~lr~~l~-~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~r~~k~q~~~L~~~f~~~l~~fq~~ 88 (231)
.|++++..|||.+|+..||++|+ .++..|+.+.+++. .|..++ +.++|.++|..+++.|+.+
T Consensus 21 ~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~----~l~~l~-------------qkeRL~~dF~~l~~~fQ~~ 83 (97)
T 1hs7_A 21 VLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIE----SNILIH-------------QNGKLSADFKNLKTKYQSL 83 (97)
T ss_dssp HHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH----HSTHHH-------------HCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH----Hhcccc-------------hhhHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999 99999999999998 332211 5889999999999999999
Q ss_pred HHHHHHHHhHHH
Q psy15784 89 QKLAHKKESDQI 100 (231)
Q Consensus 89 q~~~~~~~k~~~ 100 (231)
|+.|.++.+..+
T Consensus 84 qr~y~ek~~e~~ 95 (97)
T 1hs7_A 84 QQSYNQRKSLFP 95 (97)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHhccc
Confidence 999999988654
No 16
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=96.85 E-value=0.014 Score=38.21 Aligned_cols=55 Identities=15% Similarity=0.341 Sum_probs=50.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy15784 160 EQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKD 214 (231)
Q Consensus 160 ~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~ 214 (231)
.+.+..|...|..|+.|-.+++.-|..|..+||.|+..++.+...+..+...+.+
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999999999999999999999887754
No 17
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.70 E-value=0.0076 Score=39.44 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy15784 156 AEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKD 214 (231)
Q Consensus 156 i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~ 214 (231)
+++-.+.+..|...+..|+.|-.+++.-|..|..+||.++..++.+...+..+...+.+
T Consensus 4 ~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 4 MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678899999999999999999999999999999999999999999998877643
No 18
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=96.69 E-value=0.0082 Score=41.21 Aligned_cols=65 Identities=12% Similarity=0.271 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q psy15784 155 EAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYT 219 (231)
Q Consensus 155 ~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q 219 (231)
.+++-.+.+..|...|..|..|-.+|+.-|..|..+||.++..++.+...+..+...+.+-.+..
T Consensus 13 ~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~ 77 (82)
T 2nps_D 13 MGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMT 77 (82)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455667889999999999999999999999999999999999999999999999887765543
No 19
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.55 E-value=0.032 Score=38.63 Aligned_cols=57 Identities=16% Similarity=0.345 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy15784 158 EQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKD 214 (231)
Q Consensus 158 eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~ 214 (231)
+-.+.+..|...+..|+.|-.+|+.-|..|..+||.|+..++.+...+..++..+.+
T Consensus 26 eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 26 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334567888999999999999999999999999999999999999999999887754
No 20
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=96.14 E-value=0.037 Score=38.39 Aligned_cols=55 Identities=18% Similarity=0.391 Sum_probs=50.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy15784 160 EQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKD 214 (231)
Q Consensus 160 ~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~ 214 (231)
.+.+..|...+..|..|=.+|+.-|..|.++||.|+..++.+...+..++..+.+
T Consensus 29 D~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 29 ENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999999999999999999999999887754
No 21
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=95.95 E-value=0.064 Score=33.66 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15784 170 IRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLK 213 (231)
Q Consensus 170 i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~ 213 (231)
+.+-.++-......+..|||.|++|+.++.....++..|.+.|.
T Consensus 9 ~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 9 AIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 44455555667778899999999999999999999999998874
No 22
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.093 Score=34.15 Aligned_cols=54 Identities=11% Similarity=0.233 Sum_probs=49.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15784 160 EQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLK 213 (231)
Q Consensus 160 ~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~ 213 (231)
...+.+|...+.-|+.|=..++.-|..|.++||+|+..++.+...+..+..-|.
T Consensus 9 D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~ 62 (64)
T 3b5n_D 9 DRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLA 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456778889999999999999999999999999999999999999999888774
No 23
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=95.10 E-value=0.41 Score=31.63 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=33.4
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q psy15784 181 GAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYT 219 (231)
Q Consensus 181 ~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q 219 (231)
..+...|||.|++||.|+..+..+...|..+|..-+.++
T Consensus 32 l~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~~ 70 (70)
T 3b5n_C 32 LGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKLQ 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 346779999999999999999999999999987666553
No 24
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=94.90 E-value=0.51 Score=31.88 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=43.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy15784 161 QAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKD 214 (231)
Q Consensus 161 ~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~ 214 (231)
..++.-..-+.+-.++=.......+.||+.|++|+.++..+..++..|.+.|..
T Consensus 23 ~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 23 ESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 344444555556666677788889999999999999999999999999988854
No 25
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=92.31 E-value=0.59 Score=31.92 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=33.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q psy15784 166 LESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQL 212 (231)
Q Consensus 166 ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l 212 (231)
...-+.+..+.=..-..+...|||.|++||.++.....+...|...|
T Consensus 32 ~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 32 MLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455566788999999999999999988887766554
No 26
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=84.62 E-value=6.3 Score=25.62 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15784 155 EAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAM 217 (231)
Q Consensus 155 ~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~ 217 (231)
.|..=+..|.+|..-..+|..|..+=+.+|..=..-|+....||+.+...+.+|...-.++++
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk 69 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRK 69 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 566667788888889999999999999999999999999999999999999999987766544
No 27
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=80.91 E-value=12 Score=26.40 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=59.9
Q ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q psy15784 151 INLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYT 219 (231)
Q Consensus 151 ~~~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~~q 219 (231)
.....+.+=++.|.+|..-..+|..|..+=+.++..=...++....||+.+...+.+|...=+++++..
T Consensus 18 eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~ 86 (109)
T 3hd7_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK 86 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 334567777888889999999999999999999999999999999999999999999998876665543
No 28
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=77.81 E-value=7.1 Score=26.80 Aligned_cols=43 Identities=12% Similarity=0.281 Sum_probs=31.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHH
Q psy15784 161 QAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEA 203 (231)
Q Consensus 161 ~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~ 203 (231)
..+.++...+.|+..++.+=-.-|-+.||-||.+++-.++-..
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 3566777778888888877777888888888888766554443
No 29
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=76.37 E-value=12 Score=23.82 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15784 170 IRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLK 213 (231)
Q Consensus 170 i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~ 213 (231)
+.|--++=.....-.+.|+|.|.+....+..+..++..|...|.
T Consensus 18 ~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 18 ATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 33444455566667789999999999999999999999988775
No 30
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=74.23 E-value=16 Score=24.01 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15784 153 LREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAM 217 (231)
Q Consensus 153 ~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~ 217 (231)
...|..=+..|.+|..-..+|..|..+=+.+|..=..-|+....||+.+...+.+|...-.++++
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rk 73 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34566677788888888999999999999999988999999999999999999999887766654
No 31
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=69.69 E-value=19 Score=23.01 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH
Q psy15784 155 EAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDG 208 (231)
Q Consensus 155 ~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a 208 (231)
.|..=++.|..|..-..+|..|..+=+.+|..=..-|+....||+.+...+.+|
T Consensus 13 ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 13 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666666666666666666666666666655
No 32
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=62.27 E-value=27 Score=23.25 Aligned_cols=61 Identities=10% Similarity=0.248 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy15784 155 EAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAM 217 (231)
Q Consensus 155 ~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~~A~~ 217 (231)
-|++-++.|.+|..+...+--..+-+-.-|..+|.+ .|.-|+..|....+.....|.+|..
T Consensus 14 SIq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~ 74 (80)
T 3n27_A 14 SIESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQ 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHH
Confidence 466777777777777777776666666667766654 5667788999999999999988875
No 33
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=60.70 E-value=34 Score=22.74 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15784 153 LREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLK 213 (231)
Q Consensus 153 ~~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~~l~ 213 (231)
...|.+=+..|..|..-..+|..|+.+=+.+|..=..-|+....||+.+...+.+|...-+
T Consensus 20 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk 80 (83)
T 1sfc_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4467777788888999999999999999999999999999999999999999999886543
No 34
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=60.07 E-value=30 Score=21.87 Aligned_cols=55 Identities=18% Similarity=0.336 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q psy15784 155 EAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGN 209 (231)
Q Consensus 155 ~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~ 209 (231)
.|..=.+.|..|..-..+|..|+.+=+.+|..=..-|+....||+.+...+.+|.
T Consensus 10 ~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 10 SIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555666666777777777777777777777777777777777777776654
No 35
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=59.45 E-value=14 Score=19.64 Aligned_cols=28 Identities=39% Similarity=0.704 Sum_probs=16.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH
Q psy15784 165 QLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVE 199 (231)
Q Consensus 165 ~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~ 199 (231)
.||..+..|+.+.++| .+-+|+.|+.|.
T Consensus 3 rlee~~r~l~~ivq~l-------q~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKL-------QERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 4555666555554444 566777777653
No 36
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=53.42 E-value=33 Score=20.39 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15784 68 KMQKERLADDFSTALNAFQDVQKLAHKKE 96 (231)
Q Consensus 68 k~q~~~L~~~f~~~l~~fq~~q~~~~~~~ 96 (231)
.+..+.|..+|..++.+|...|...+.+.
T Consensus 11 e~~ld~LqTr~ArLlae~~ssq~KlKqRi 39 (46)
T 3swy_A 11 GSSLDTLQTRFARLLAEYNATQMKMKQRL 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668889999999999999998877765
No 37
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=47.11 E-value=53 Score=20.89 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHH
Q psy15784 154 REAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNT 210 (231)
Q Consensus 154 ~~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a~~ 210 (231)
..+..=.+.|..|..-..+|..|..+=+.+|..=..-|+....||+.+...+.+|..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777778888888888888887788888888888888888877765
No 38
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=44.98 E-value=64 Score=21.27 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=32.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH
Q psy15784 162 AIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSD 207 (231)
Q Consensus 162 ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~ 207 (231)
.|..||..+.-.-....+|+..|..|...||....-+..-.+.+..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777788888888888888777666555543
No 39
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=44.75 E-value=1e+02 Score=23.39 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHH
Q psy15784 158 EQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYV 205 (231)
Q Consensus 158 eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v 205 (231)
.+.-....|......|+.+-..|-.|+..|.+.|...|..|.....-|
T Consensus 51 TK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v 98 (159)
T 3p8c_F 51 TKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTV 98 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456788888899999999999999999999999999998765543
No 40
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=44.46 E-value=46 Score=21.89 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15784 68 KMQKERLADDFSTALNAFQDVQKLAHKKES 97 (231)
Q Consensus 68 k~q~~~L~~~f~~~l~~fq~~q~~~~~~~k 97 (231)
.+..+.|..+|..++.+|...|.+.+++.-
T Consensus 13 E~sld~LQTrfARLLaEy~ssQ~KLKqRit 42 (74)
T 3swf_A 13 ESSVDLLQTRFARILAEYESMQQKLKQRLT 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999998888763
No 41
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=43.00 E-value=62 Score=21.31 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHh
Q psy15784 171 RDVNQIFKELGAMVHDQGELIDSIEAH 197 (231)
Q Consensus 171 ~el~~if~~l~~lV~~Qg~~id~Ie~n 197 (231)
.++..++.+=-.-|.+-|+-||.+++-
T Consensus 25 ~ev~~iM~~NI~~vLeRGekLd~L~~k 51 (80)
T 1l4a_A 25 EEVVDIMRVNVDKVLERDSKISELDDR 51 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333333333334444555555555543
No 42
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=42.28 E-value=61 Score=20.19 Aligned_cols=41 Identities=10% Similarity=0.261 Sum_probs=32.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHH
Q psy15784 161 QAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERT 201 (231)
Q Consensus 161 ~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a 201 (231)
..|..+...+.++..++.+=-.-|.+.|+-||.+++-.+.-
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L 44 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADAL 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 35677888888888888888888889999988887655543
No 43
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=39.31 E-value=1.4e+02 Score=23.57 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH
Q psy15784 155 EAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSD 207 (231)
Q Consensus 155 ~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~ 207 (231)
.+.+-...+..|...+.++..++.+++..+.+|...++.|..++.....-++.
T Consensus 141 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~ 193 (227)
T 1qu7_A 141 LVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 193 (227)
T ss_dssp HHHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566778888889999999999999999999999998887775554443
No 44
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=38.58 E-value=73 Score=20.07 Aligned_cols=38 Identities=11% Similarity=0.211 Sum_probs=22.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHH
Q psy15784 163 IRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVER 200 (231)
Q Consensus 163 i~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~ 200 (231)
|..+...+.++..++.+=-.-|.+-|+-|+.+++-.+.
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~ 43 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSDLEERTAA 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666655444
No 45
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=38.10 E-value=96 Score=21.31 Aligned_cols=76 Identities=8% Similarity=0.135 Sum_probs=54.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15784 18 LGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQKERLADDFSTALNAFQDVQKLAHKKES 97 (231)
Q Consensus 18 lgt~~d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~r~~k~q~~~L~~~f~~~l~~fq~~q~~~~~~~k 97 (231)
.+.|.+-..+-..|..-.+..+.-...+......|+.+-+ . +..-+.-.-.++...++.|-.....|.-.++
T Consensus 5 ~~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqD----q----kr~kFee~fe~l~s~l~~f~e~a~e~vp~L~ 76 (94)
T 3fx7_A 5 QMDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRD----A----RRDKFSEVLDNLKSTFNEFDEAAQEQIAWLK 76 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCS----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhh----H----HHHHHHHHHHHHHHHHHHHHHhhHHHhHHHH
Confidence 4455555667778888888888888999999999976542 1 2234556666777777888888888887777
Q ss_pred HHHH
Q psy15784 98 DQIK 101 (231)
Q Consensus 98 ~~~~ 101 (231)
.+++
T Consensus 77 ~~i~ 80 (94)
T 3fx7_A 77 ERIR 80 (94)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 46
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=37.01 E-value=99 Score=21.13 Aligned_cols=39 Identities=10% Similarity=0.273 Sum_probs=26.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHH
Q psy15784 162 AIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVER 200 (231)
Q Consensus 162 ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~ 200 (231)
.|.++...+.++..++.+=-.-|.+-|+-||.+++-.+.
T Consensus 31 ~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~ 69 (96)
T 1sfc_A 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455566666667677776666777778888877765544
No 47
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=36.34 E-value=60 Score=18.43 Aligned_cols=32 Identities=9% Similarity=0.329 Sum_probs=25.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy15784 164 RQLESDIRDVNQIFKELGAMVHDQGELIDSIE 195 (231)
Q Consensus 164 ~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie 195 (231)
..+..++..++.-+..+-..|..||..+...-
T Consensus 2 ~q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~Lt 33 (38)
T 2beq_A 2 SQIQESLTTTSTALGKLQDVVNQNAQALNTLV 33 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45677888888888889999999998876643
No 48
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=35.90 E-value=77 Score=19.57 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=30.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHH
Q psy15784 162 AIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVER 200 (231)
Q Consensus 162 ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~ 200 (231)
.|.++...+.++..++.+=-.-|.+.|+-||.+.+-.+.
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~ 41 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADN 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 466778888888888888888888889988888765554
No 49
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=34.53 E-value=86 Score=19.67 Aligned_cols=37 Identities=24% Similarity=0.461 Sum_probs=22.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH
Q psy15784 163 IRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVE 199 (231)
Q Consensus 163 i~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~ 199 (231)
|..+...+.++..|+.+==.-|.+-|+-||.+..-.+
T Consensus 11 l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~ 47 (65)
T 1gl2_A 11 VRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTE 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4555556666666666655666666777766654433
No 50
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=33.87 E-value=2.1e+02 Score=23.93 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH
Q psy15784 155 EAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDG 208 (231)
Q Consensus 155 ~i~eR~~ei~~ie~~i~el~~if~~l~~lV~~Qg~~id~Ie~nv~~a~~~v~~a 208 (231)
.+.+=...+..|...+.++...+.+++.-+.+|...++.|-.++.....-++..
T Consensus 221 ~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~ 274 (341)
T 3zx6_A 221 LVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQN 274 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556677888899999999999999999999999998888877665544433
No 51
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=24.46 E-value=1.4e+02 Score=23.72 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15784 70 QKERLADDFSTALNAFQDVQKLA 92 (231)
Q Consensus 70 q~~~L~~~f~~~l~~fq~~q~~~ 92 (231)
..+..+++|..-.++|...=+.|
T Consensus 152 ~le~~KreFVkySKrFS~TLKeY 174 (213)
T 3ajm_A 152 ALEHQKKEFVKYSKSFSDTLKTY 174 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHhhHHHHHH
Confidence 33444455555555555444444
No 52
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=20.55 E-value=3.1e+02 Score=21.41 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=50.0
Q ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15784 16 NLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQKERLADDFSTALNAFQDVQKLAHKK 95 (231)
Q Consensus 16 ~~lgt~~d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~r~~k~q~~~L~~~f~~~l~~fq~~q~~~~~~ 95 (231)
..-|+..=++++ ...++.+.-.+++.++..+..++.+. +| -...++++|+.+++.|+.+-.-..++
T Consensus 117 ~mC~~~pld~eL---c~~l~~qL~~L~~~~~~ll~~l~dl~---Sp--------~l~h~RN~yq~i~q~Fqi~lk~Ltdk 182 (204)
T 2jqq_A 117 EMCGIEPLEEEI---CSGLIEQLYKLITASRRILESCADSN---SP--------YIHHLRNDYQDLLQEFQISLKILTEK 182 (204)
T ss_dssp HHHTSSCCCHHH---HHHHHHHHHHHHHHHHHHHHHHCSCC---CH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCcHHH---HHHHHHHHHHHHHHHHHHHHHHHhcC---cH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344543334444 67788888899999999999998875 33 23456778999999999887777777
Q ss_pred HhH
Q psy15784 96 ESD 98 (231)
Q Consensus 96 ~k~ 98 (231)
+-+
T Consensus 183 ClE 185 (204)
T 2jqq_A 183 CLE 185 (204)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 53
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=20.24 E-value=2.1e+02 Score=19.40 Aligned_cols=71 Identities=10% Similarity=0.158 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15784 10 SMKRMVNLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQKERLADDFSTALNAF 85 (231)
Q Consensus 10 ~l~k~~~~lgt~~d~~~lr~~l~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~r~~k~q~~~L~~~f~~~l~~f 85 (231)
.|........++ .+...+..+.....++...+..+...|.-+.+. ++.+..-|+.....+...+..+-..|
T Consensus 21 ~l~~~~~~~~~~-~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~----~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 21 RINNYITRHNTA-GDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD----ENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp HHHHHHHHTCCC---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333332 334667778877777777778888888777754 23344456777777777666555544
Done!