RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15784
(231 letters)
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain. Most if not all vesicular membrane
fusion events in eukaryotic cells are believed to be
mediated by a conserved fusion machinery, the SNARE
[soluble N-ethylmaleimide-sensitive factor (NSF)
attachment protein (SNAP) receptors] machinery. The
SNARE domain is thought to act as a protein-protein
interaction module in the assembly of a SNARE protein
complex.
Length = 62
Score = 64.1 bits (157), Expect = 5e-14
Identities = 24/60 (40%), Positives = 42/60 (70%)
Query: 159 QEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMY 218
+++A+ +LES I ++ Q+F ++G V +QGEL+D I+ +V+ T++ V N +LK AA Y
Sbjct: 1 RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRLKKAARY 60
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion
protein)-Attachment protein (SNAP) REceptor domain;
these alpha-helical motifs form twisted and parallel
heterotetrameric helix bundles; the core complex
contains one helix from a protein that is anchored in
the vesicle membrane (synaptobrevin), one helix from a
protein of the target membrane (syntaxin), and two
helices from another protein anchored in the target
membrane (SNAP-25); their interaction forms a core which
is composed of a polar zero layer, a flanking
leucine-zipper layer acts as a water tight shield to
isolate ionic interactions in the zero layer from the
surrounding solvent.
Length = 60
Score = 58.7 bits (143), Expect = 5e-12
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 157 EEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDA 215
+E+++ + QLE+ I ++ QIF +LG V +QGEL+D IE +V+ + V N +LK A
Sbjct: 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs. All
alpha-helical motifs that form twisted and parallel
four-helix bundles in target soluble
N-ethylmaleimide-sensitive factor (NSF) attachment
protein (SNAP) receptor proteins. This motif found in
"Q-SNAREs".
Length = 66
Score = 56.1 bits (136), Expect = 6e-11
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 152 NLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQ 211
L EE+++ + QLE I+++ QIF ++G + +QGE +D IE +V+ + + N +
Sbjct: 3 ALAREEERDEELEQLEKSIQELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKR 62
Query: 212 LK 213
LK
Sbjct: 63 LK 64
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular
trafficking and secretion].
Length = 283
Score = 52.2 bits (125), Expect = 4e-08
Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 13/159 (8%)
Query: 64 QRQCKMQKERLADDFSTALNAFQDVQKLAHKKESDQIKKTKVISKLPPPPGRQAVSGEEF 123
Q + +L D +T Q +Q+ + + Q+ + K + R + +
Sbjct: 103 NLQSSFLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFL--------RNKNNDQHP 154
Query: 124 GDRTQDQLIELQDNGSQQLQQQRQQDFINL----REAEEQEQAIRQLESDIRDVNQIFKE 179
+ +D+ L GSQQ QQ+ L E+++ I+ L I ++N+IF++
Sbjct: 155 LEEEEDE-ESLSSLGSQQTLQQQGLSNEELEYQQILITERDEEIKNLARGIYELNEIFRD 213
Query: 180 LGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMY 218
LG++V +QGEL+D I+ ++E T + + N +L+ A +
Sbjct: 214 LGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAH 252
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain. Three-helix domain
that (in Sso1p) slows the rate of its reaction with the
SNAP-25 homologue Sec9p.
Length = 117
Score = 45.0 bits (107), Expect = 2e-06
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 8 ISSMKRMVNLLGTAQDS-SDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPL---PSSPSE 63
++ ++++ L T D+ + + +L ++ ++LAK+ LK+L L S +
Sbjct: 24 VAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSAS 83
Query: 64 QRQCKMQKERLADDFSTALNAFQDVQKLAHKKES 97
R K Q E+L F +N FQ +Q+ ++E
Sbjct: 84 DRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117
>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous
system-specific proteins implicated in the docking of
synaptic vesicles with the presynaptic plasma membrane;
they are a family of receptors for intracellular
transport vesicles; each target membrane may be
identified by a specific member of the syntaxin family;
syntaxins contain a moderately well conserved
amino-terminal domain, called Habc, whose structure is
an antiparallel three-helix bundle; a linker of about 30
amino acids connects this to the carboxy-terminal
region, designated H3 (t_SNARE), of the syntaxin
cytoplasmic domain; the highly conserved H3 region forms
a single, long alpha-helix when it is part of the core
SNARE complex and anchors the protein on the cytoplasmic
surface of cellular membranes; H3 is not included in
defining this domain.
Length = 151
Score = 43.4 bits (103), Expect = 1e-05
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 8 ISSMKRMVNLLGTAQD-SSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSP----S 62
+ ++++ + L TA D + K +L + ++LAK+ LK+L ++ + S
Sbjct: 22 VEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSS 81
Query: 63 EQRQCKMQKERLADDFSTALNAFQDVQKLAHKKESDQIK 101
R K Q L+ F + F Q+ ++ ++I+
Sbjct: 82 VDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQ 120
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular
trafficking and secretion].
Length = 280
Score = 37.6 bits (87), Expect = 0.003
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 153 LREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQL 212
L E + + Q I+++E + ++ Q+F ++ +V +Q E +D I+ +VE + V G
Sbjct: 177 LAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHT 236
Query: 213 KDAAMY 218
A
Sbjct: 237 DKAVKS 242
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin. Syntaxins are the prototype family
of SNARE proteins. They usually consist of three main
regions - a C-terminal transmembrane region, a central
SNARE domain which is characteristic of and conserved in
all syntaxins (pfam05739), and an N-terminal domain that
is featured in this entry. This domain varies between
syntaxin isoforms; in syntaxin 1A it is found as three
alpha-helices with a left-handed twist. It may fold back
on the SNARE domain to allow the molecule to adopt a
'closed' configuration that prevents formation of the
core fusion complex - it thus has an auto-inhibitory
role. The function of syntaxins is determined by their
localisation. They are involved in neuronal exocytosis,
ER-Golgi transport and Golgi-endosome transport, for
example. They also interact with other proteins as well
as those involved in SNARE complexes. These include
vesicle coat proteins, Rab GTPases, and tethering
factors.
Length = 103
Score = 30.0 bits (68), Expect = 0.30
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 8 ISSMKRMVNLLGTAQDS-SDTKSQLYQIQHYTQQLAKDTNHILKQL-----NDTPLPSSP 61
+ ++++ + TA DS + + +L ++ +QLA+ LK L ++ L S
Sbjct: 23 LEELQKLHKRILTAPDSDKELREELEELTQEIKQLARAIKKKLKSLQQLNKSEQGLGHSS 82
Query: 62 SEQRQCKMQKERLADDFSTAL 82
+ R K Q L+ F L
Sbjct: 83 AVDRIRKNQLANLSKKFKDVL 103
>gnl|CDD|211759 TIGR02654, circ_KaiB, circadian clock protein KaiB. Members of
this protein family are the circadian clock protein KaiB
of Cyanobacteria, encoded in the circadian clock gene
cluster kaiABC. KaiB has homologs of unknown function in
some Archaea and Proteobacteria, and has paralogs of
unknown function in some Cyanobacteria. KaiB forms
homodimers, homotetramers, and multimeric complexes with
KaiA and/or KaiC [Cellular processes, Other].
Length = 87
Score = 29.2 bits (65), Expect = 0.59
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 59 SSPSEQRQCKMQKERLADDFST--ALNAFQDVQKLAHKKESDQIKKTKVISKLPPPPGRQ 116
++P+ R K K L +F AL DV K E D+I T +SK+ PPP R+
Sbjct: 13 NTPNSVRALKTLKNILETEFQGVYALKVI-DVLKNPQLAEEDKILATPTLSKILPPPVRK 71
Query: 117 AV 118
+
Sbjct: 72 II 73
>gnl|CDD|181770 PRK09301, PRK09301, circadian clock protein KaiB; Provisional.
Length = 103
Score = 29.0 bits (65), Expect = 0.82
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 59 SSPSEQRQCKMQKERLADDFST--ALNAFQDVQKLAHKKESDQIKKTKVISKLPPPPGRQ 116
++P+ R K K L +F AL DV K E D+I T ++K+ PPP R+
Sbjct: 16 NTPNSVRALKTLKNILETEFKGVYALKVI-DVLKNPQLAEEDKILATPTLAKILPPPVRK 74
Query: 117 AV 118
+
Sbjct: 75 II 76
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 29.9 bits (68), Expect = 1.1
Identities = 20/131 (15%), Positives = 55/131 (41%), Gaps = 27/131 (20%)
Query: 68 KMQK------ERLADDFSTAL---NAFQDVQKLAHKKESDQIKK--------TKVISKLP 110
+M+K + D+ AL ++ L + +++++K ++ + KL
Sbjct: 5 RMKKVLIVTLKSYKDEVLEALHELGVVH-IEDLKEELSNERLRKLRSLLTKLSEALDKL- 62
Query: 111 PPPGRQAVSGEEFGDRTQDQLIELQDNGSQQLQQQRQQDFINL-REAEEQEQAIRQLESD 169
R + ++ ++L + +++ + +E +E E+ I +LE++
Sbjct: 63 ----RSYLPKLNPLREE---KKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENE 115
Query: 170 IRDVNQIFKEL 180
I+++ Q + L
Sbjct: 116 IKELEQEIERL 126
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals.Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in(1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles.This model is specific for the
eukaryotic members members of this family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 559
Score = 29.7 bits (67), Expect = 1.5
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 52 LNDTPLPSSPSEQRQCKMQKERLADDFSTALNAFQDVQKLAH 93
N P S P KE + D T L + Q+
Sbjct: 508 TNPEPSNSEPIIPALSSEDKEEIRDILGTNLY--KPRQRFQS 547
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 28.8 bits (65), Expect = 1.7
Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 125 DRTQDQLIELQDNGSQQLQQQRQQDFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMV 184
Q+QL ELQ +Q+L+Q+ L +++ I+QL ++ ++++ +EL +
Sbjct: 83 AELQEQLAELQQ-ENQELKQELSTLEAELERLQKELARIKQLSANAIELDEENRELREEL 141
Query: 185 HDQGELIDSIEAHVERTE 202
+ + +++EA ER +
Sbjct: 142 AELKQENEALEAENERLQ 159
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 29.3 bits (66), Expect = 1.9
Identities = 8/53 (15%), Positives = 18/53 (33%)
Query: 154 REAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVS 206
E+E + +I + K+L V E ++ +E + +
Sbjct: 401 ERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIE 453
>gnl|CDD|206087 pfam13916, Phostensin_N, PP1-regulatory protein, Phostensin
N-terminal. Phostensin has been identified as a PP1
regulatory protein binding protein. This domain is
N-terminal to the PP1- and SH3-binding regions though
may carry an additional SH3-binding motif. It is likely
that Phostensin targets PP1 to the F-actin cytoskeleton.
Phostensin binds to actin and decreases the elongation
and depolymerisation rates of actin filament pointed
ends.
Length = 82
Score = 27.2 bits (60), Expect = 2.5
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 110 PPPPGRQAVSGEEFGDRTQDQLIELQDNGSQQLQQQRQQ 148
P V E G Q+ + L+ + QQ +
Sbjct: 35 AAEPDESRVLAESLGPLHQNPFMRLERERRRGQQQAGAE 73
>gnl|CDD|235750 PRK06228, PRK06228, F0F1 ATP synthase subunit epsilon; Validated.
Length = 131
Score = 28.0 bits (63), Expect = 2.5
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 7/35 (20%)
Query: 140 QQLQQQRQQDFINLREAEEQEQAIR----QLESDI 170
+L++ +Q+F+ L +E+E+++R +LES
Sbjct: 90 GELREAVEQEFLTL---DERERSVRSALAKLESGF 121
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest light
for photosynthesis, and dissipate excess light energy
absorbed by the antenna pigments. The cyclisation of
lycopene (psi, psi-carotene) is a key branch point in
the pathway of carotenoid biosynthesis. Two types of
cyclic end groups are found in higher plant carotenoids:
the beta and epsilon rings. Carotenoids with two beta
rings are ubiquitous, and those with one beta and one
epsilon ring are common; however, carotenoids with two
epsilon rings are rare.
Length = 374
Score = 28.0 bits (63), Expect = 3.8
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 186 DQGELIDSIEAHVERTEAYVSDGNTQLKDAAMYTVSR 222
D G L +E E DG +L VS
Sbjct: 50 DLGPLAPCVEHSWPGYEVRFPDGRRKLIGRGYGRVSS 86
>gnl|CDD|218166 pfam04598, Gasdermin, Gasdermin family. The precise function of
this protein is unknown. A deletion/insertion mutation
is associated with an autosomal dominant non-syndromic
hearing impairment form. In addition, this protein has
also been found to contribute to acquired etoposide
resistance in melanoma cells. This family also includes
the gasdermin protein.
Length = 451
Score = 28.1 bits (63), Expect = 4.1
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 148 QDFINLR-EAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELID 192
DF L+ E E Q Q + +L ++R + L A++ DQ L D
Sbjct: 277 GDFRGLKEEVERQFQPLAELPRELRAA--LLGSLLALLRDQEALQD 320
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 28.1 bits (63), Expect = 5.0
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 46 NHILKQLNDTPLPSSPSEQRQ-----CK-MQKERLADDFSTALNA-FQDVQKLAHKKESD 98
+ K N + K +QK + +DF +Q++ K +S
Sbjct: 450 KLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFETDALKLQEILEKVDSK 509
Query: 99 QIKKTKVISKLP 110
K K+ +K+
Sbjct: 510 SEKLEKISAKID 521
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 27.8 bits (62), Expect = 5.1
Identities = 13/62 (20%), Positives = 26/62 (41%)
Query: 154 REAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLK 213
++ ++ ++ I LE IR+ +L + I S+EA + T + Q+
Sbjct: 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97
Query: 214 DA 215
D
Sbjct: 98 DL 99
>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1). The
homeobox gene Prox1 is expressed in a subpopulation of
endothelial cells that, after budding from veins, gives
rise to the mammalian lymphatic system. Prox1 has been
found to be an early specific marker for the developing
liver and pancreas in the mammalian foregut endoderm.
This family contains an atypical homeobox domain.
Length = 908
Score = 27.7 bits (61), Expect = 7.0
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 108 KLPPPPGRQAVSGEEFGDRTQDQLIELQDNGSQQLQQQRQQDFINLREAEEQEQAI--RQ 165
KL P + E +G Q L QQ+QQ F L ++++ RQ
Sbjct: 245 KLYQPQQHETSPAESYGAAAAGLNSRENKR-KQMLPQQQQQSFDQLVSPRKEQKREERRQ 303
Query: 166 LESDIRDVNQIFKEL 180
L+ +RD+ + ++L
Sbjct: 304 LKQQLRDMQKQLRQL 318
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 27.8 bits (62), Expect = 7.1
Identities = 10/69 (14%), Positives = 32/69 (46%)
Query: 139 SQQLQQQRQQDFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHV 198
++L + Q E + + +R LE + ++ + +EL + + + ++E +
Sbjct: 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEEL 732
Query: 199 ERTEAYVSD 207
E+ ++ + +
Sbjct: 733 EQLQSRLEE 741
>gnl|CDD|234354 TIGR03789, pdsO, proteobacterial sortase system OmpA family
protein. A newly defined histidine kinase (TIGR03785)
and response regulator (TIGR03787) gene pair occurs
exclusively in Proteobacteria, mostly of marine origin,
nearly all of which contain a subfamily 6 sortase
(TIGR03784) and its single dedicated target protein
(TIGR03788) adjacent to to the sortase. This protein
family shows up in only in those species with the
histidine kinase/response regulator gene pair, and often
adjacent to that pair. It belongs to the OmpA protein
family (pfam00691). Its function is unknown. We assign
the gene symbol pdsO, for Proteobacterial Dedicated
Sortase system OmpA family protein.
Length = 239
Score = 27.1 bits (60), Expect = 8.6
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 135 QDNGSQQLQQQRQQDFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDS 193
D Q + QQRQQ + +++QA+ QLE+ + Q L + DQ +L++
Sbjct: 79 NDEQQQHIAQQRQQ----MVALTQKQQALEQLEA---EYQQAQVHLETLQQDQQQLLEE 130
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 27.2 bits (60), Expect = 9.4
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 153 LREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSD 207
+RE E ++ + +D DVN EL + H+ +I+ E +E E + +
Sbjct: 383 IREGEVLDEYQPEDLTDYIDVN----ELKRINHNIKIIIEPREKLIEYAENLIKN 433
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 27.3 bits (61), Expect = 9.8
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 126 RTQDQLIELQDNGSQQLQQQRQQDFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVH 185
Q + IE Q ++ ++ E E E+ + ++E + ++N+ K+LG
Sbjct: 236 ERQKEAIERQLASLEEELEKLT------EEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289
Query: 186 DQ-GELIDSIEAHVERTEAYVSDGNTQLKDAA 216
+ E I +EA + E +++ +L+DA
Sbjct: 290 LRVKEKIGELEAEIASLERSIAEKERELEDAE 321
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.128 0.340
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,292,018
Number of extensions: 1050620
Number of successful extensions: 1531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1463
Number of HSP's successfully gapped: 171
Length of query: 231
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 137
Effective length of database: 6,768,326
Effective search space: 927260662
Effective search space used: 927260662
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.6 bits)