RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15784
(231 letters)
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex,
multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1
PDB: 3c98_B
Length = 267
Score = 96.7 bits (240), Expect = 2e-24
Identities = 48/217 (22%), Positives = 90/217 (41%), Gaps = 16/217 (7%)
Query: 8 ISSMKRMVN-LLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLN-----DTPLPSSP 61
+ +KR + +L + TK +L ++ ++ A LK + + L S
Sbjct: 51 VEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS 110
Query: 62 SEQRQCKMQKERLADDFSTALNAFQDVQKLAHKKESDQIKKTKVISKLPPPPGRQAVSGE 121
++ R K Q L+ F ++ + Q ++ +I++ I+ + E
Sbjct: 111 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTT-------TSE 163
Query: 122 EFGDRTQDQLIELQDNGSQQLQQQRQQDFINLREAEEQEQAIRQLESDIRDVNQIFKELG 181
E D + + +G +Q L E E + I +LE+ IR+++ +F ++
Sbjct: 164 ELEDMLESGNPAIFASGIIMDSSISKQ---ALSEIETRHSEIIKLENSIRELHDMFMDMA 220
Query: 182 AMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMY 218
+V QGE+ID IE +VE YV + K A Y
Sbjct: 221 MLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 257
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM
PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Length = 279
Score = 94.1 bits (233), Expect = 2e-23
Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 23/226 (10%)
Query: 3 SNILRISSMKRMVNLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQL---------- 52
I +++ + + + +D +L L LKQ+
Sbjct: 62 QAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQE 121
Query: 53 NDTPLPSSPSEQRQCKMQKERLADDFSTALNAFQDVQKLAHKKESDQIKKTKVISKLPPP 112
+ ++ R + Q L+ F + + DVQ ++ + + +
Sbjct: 122 GTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVAR---------- 171
Query: 113 PGRQAVSGEEFGDRTQDQLIELQDNGSQQLQQQRQQDFINLREAEEQEQAIRQLESDIRD 172
+ V D ++IE + + L E ++ + I+QLE + +
Sbjct: 172 --QCRVVEPSLSDDAIQKVIE-HGTEGIFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLE 228
Query: 173 VNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDAAMY 218
++++F ++ +V QGE+ID IE VE++ YV Q+ A Y
Sbjct: 229 LHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHY 274
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell
juncti cytoplasmic vesicle, membrane, phosphoprotein;
HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Length = 109
Score = 79.8 bits (197), Expect = 1e-19
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 138 GSQQLQQQRQQDFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAH 197
GS +Q L E E + I +LE+ IR+++ +F ++ +V QGE+ID IE +
Sbjct: 1 GSHMDSSISKQ---ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYN 57
Query: 198 VERTEAYVSDGNTQLKDAAMY 218
VE YV + K A Y
Sbjct: 58 VEHAVDYVERAVSDTKKAVKY 78
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis
complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB:
1hvv_A* 1urq_B
Length = 77
Score = 77.7 bits (192), Expect = 3e-19
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 153 LREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQL 212
L E E + I +LE+ IR+++ +F ++ +V QGE+ID IE +VE YV +
Sbjct: 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDT 61
Query: 213 KDAAMY 218
K A Y
Sbjct: 62 KKAVKY 67
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex,
coiled coil, transmembrane; 1.9A {Mus musculus} SCOP:
h.1.15.1
Length = 65
Score = 77.3 bits (191), Expect = 4e-19
Identities = 35/62 (56%), Positives = 47/62 (75%)
Query: 155 EAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKD 214
E+E +IRQLE+DI D+N+IFK+LG M+H+QG++IDSIEA+VE E +V N QL
Sbjct: 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62
Query: 215 AA 216
AA
Sbjct: 63 AA 64
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle,
LEFT-handed twist, membrane fusion, vesicle transport,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 78.6 bits (193), Expect = 6e-19
Identities = 50/100 (50%), Positives = 68/100 (68%)
Query: 8 ISSMKRMVNLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQC 67
+ +K +++ LGT QDSS + L Q+QH T QLAK+TN +LK+L PLP S SEQRQ
Sbjct: 30 TAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQ 89
Query: 68 KMQKERLADDFSTALNAFQDVQKLAHKKESDQIKKTKVIS 107
++QKERL +DFS ALN FQ VQ+ +KE + I ++ S
Sbjct: 90 RLQKERLMNDFSAALNNFQAVQRRVSEKEKESIARSGPSS 129
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion,
snare complex, early endosomal snare complex, VTI1A,
VAMP4, transport protein; 2.50A {Rattus norvegicus}
Length = 71
Score = 76.5 bits (189), Expect = 9e-19
Identities = 37/63 (58%), Positives = 48/63 (76%)
Query: 156 AEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDA 215
+E AI+QLE+DI DVNQIFK+L M+HDQG+LIDSIEA+VE +E +V + QL+ A
Sbjct: 1 GSMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRA 60
Query: 216 AMY 218
A Y
Sbjct: 61 AYY 63
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle,
transport protein; 1.45A {Rattus norvegicus} SCOP:
h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Length = 68
Score = 75.8 bits (187), Expect = 2e-18
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 153 LREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQL 212
L E E + I +LE+ IR+++ +F ++ +V QGE+ID IE +VE YV +
Sbjct: 4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDT 63
Query: 213 KDAA 216
K A
Sbjct: 64 KKAV 67
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25,
SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A
{Saccharomyces cerevisiae} SCOP: h.1.15.1
Length = 69
Score = 74.2 bits (183), Expect = 6e-18
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 153 LREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQL 212
L E + + Q + +LE + ++ Q+F ++ +V +Q E +D I+ +VE + V G
Sbjct: 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHT 61
Query: 213 KDAAMY 218
A
Sbjct: 62 DKAVKS 67
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion
protein complex, transport protein; 2.40A {Rattus
norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Length = 83
Score = 73.2 bits (180), Expect = 2e-17
Identities = 24/77 (31%), Positives = 38/77 (49%)
Query: 142 LQQQRQQDFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERT 201
+ L E E + I +LE+ IR+++ +F ++ +V QGE+ID IE +VE
Sbjct: 2 IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA 61
Query: 202 EAYVSDGNTQLKDAAMY 218
YV + K A Y
Sbjct: 62 VDYVERAVSDTKKAVKY 78
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein;
2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Length = 196
Score = 69.7 bits (170), Expect = 7e-15
Identities = 25/185 (13%), Positives = 62/185 (33%), Gaps = 12/185 (6%)
Query: 3 SNILRISSMKRMVNLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPS 62
I ++ S+ + + + +S + L L + +K
Sbjct: 23 HTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQ-----RDGI 77
Query: 63 EQRQCKMQKERLADDFSTALNAFQDVQKLAHKKESDQIKKTKVISKLPPPPGRQAVSGEE 122
+ Q E F + ++ V ++ +Q K+ +I + + +
Sbjct: 78 HDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISD 137
Query: 123 FGDRTQDQLIELQDNGSQQLQQQRQQDFINLREAEEQEQAIRQLESDIRDVNQIFKELGA 182
G + L N + + L E + + Q + +LE + ++ Q+F ++
Sbjct: 138 VGGQQIFSQALLNANRRGEAKT-------ALAEVQARHQELLKLEKSMAELTQLFNDMEE 190
Query: 183 MVHDQ 187
+V +Q
Sbjct: 191 LVIEQ 195
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.013
Identities = 8/46 (17%), Positives = 22/46 (47%), Gaps = 21/46 (45%)
Query: 159 QEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDS-----IEAHVE 199
++QA+++L++ ++ ++ + DS I+A +E
Sbjct: 18 EKQALKKLQASLK----LYAD------------DSAPALAIKATME 47
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion
protein complex, transport protein; 2.40A {Rattus
norvegicus} SCOP: h.1.15.1
Length = 87
Score = 32.1 bits (73), Expect = 0.028
Identities = 10/78 (12%), Positives = 28/78 (35%)
Query: 136 DNGSQQLQQQRQQDFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIE 195
+ + + N E ++ + Q+ I ++ + ++G + Q ID I
Sbjct: 4 EREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIM 63
Query: 196 AHVERTEAYVSDGNTQLK 213
+ + + + N +
Sbjct: 64 EKADSNKTRIDEANQRAT 81
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle,
transport protein; 1.45A {Rattus norvegicus} SCOP:
h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D
3ipd_D 1urq_D 1xtg_B
Length = 66
Score = 31.2 bits (71), Expect = 0.041
Identities = 9/57 (15%), Positives = 24/57 (42%)
Query: 157 EEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLK 213
E ++ + Q+ I ++ + ++G + Q ID I + + + + N +
Sbjct: 6 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 62
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane
protein, membrane fusion protein complex, coiled coil,
transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Length = 65
Score = 30.9 bits (70), Expect = 0.056
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 157 EEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLK 213
+EQ+ + L S I Q+ +E+G + +Q E+ID + VE T+ + ++
Sbjct: 5 QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVT 61
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.074
Identities = 23/163 (14%), Positives = 51/163 (31%), Gaps = 41/163 (25%)
Query: 26 DTKSQLYQ--IQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCK---------MQKERL 74
+ + L++ + HY D++ ++ D + ++
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-------------QYFYSHIGHHLKNIEH 486
Query: 75 ADDFSTALNAFQDV----QKLAHKKESD-----------QIKK-TKVISKLPPPPGRQAV 118
+ + F D QK+ H + Q+K I P R
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 119 SGEEFGDRTQDQLIELQDNGSQQLQQQRQQDFINLREAEEQEQ 161
+ +F + ++ LI + ++ + + I EA +Q Q
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEAI-FEEAHKQVQ 588
Score = 31.7 bits (71), Expect = 0.22
Identities = 23/138 (16%), Positives = 42/138 (30%), Gaps = 43/138 (31%)
Query: 32 YQIQHYTQQL--AKDTNHILKQLND--------TPLPSSPSEQRQCKMQKERLADDFSTA 81
+Q + + ++ +HI+ + L S E Q K +E L ++
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ-KFVEEVLRINYKFL 94
Query: 82 LNAFQDVQKLAHKKESDQIKKTKVISKLPPPPGRQAVSGEEFGDRTQDQLIELQDNGSQQ 141
++ + E Q P E DR N +Q
Sbjct: 95 MSPIK--------TEQRQ-------------PSMMTRMYIEQRDRLY--------NDNQV 125
Query: 142 LQQ---QRQQDFINLREA 156
+ R Q ++ LR+A
Sbjct: 126 FAKYNVSRLQPYLKLRQA 143
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.15
Identities = 11/82 (13%), Positives = 33/82 (40%), Gaps = 24/82 (29%)
Query: 89 QKLAHKKESDQIKKTKVISKLPPPPGRQAVSGEEFGDRTQDQLIELQDNGSQQLQQQRQQ 148
++L + ++ + + K ++ + EE+ R +Q+ ++ +
Sbjct: 96 KRLQELDAASKVMEQEWREK-----AKKDL--EEWNQRQSEQV-----------EKNKIN 137
Query: 149 DFINLREAEEQEQAIRQLESDI 170
+ R A++ +Q ++DI
Sbjct: 138 N----RIADKAF--YQQPDADI 153
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural
genomics, the center for structural genomics of I
diseases, csgid; 1.87A {Listeria monocytogenes}
Length = 249
Score = 30.5 bits (69), Expect = 0.37
Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 19/177 (10%)
Query: 31 LYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQKERLADDFSTALNAFQDVQK 90
L +IQ D N L QR ++K++ + L+ +K
Sbjct: 63 LKKIQQILDDPLFDKNVALDM------------QRHLLIEKKQRIETMLATLDLTIKNEK 110
Query: 91 LAHKKESDQIKKTKVISKLPPPPGRQAVSGEEFGDRTQDQLIELQDNGSQQLQQQRQQDF 150
+ +K P +A + +GD+ ++ E +N S++ Q ++ F
Sbjct: 111 --GEITMTNKEKFTGFDFSSNPYEEEAR--KLWGDKVVEKANEKVNNMSEKEQLTLKESF 166
Query: 151 INLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSD 207
++R+L + + ++D I S+EA E YV+D
Sbjct: 167 DAEFRHLA---SVRKLTPESEEAQLEIDHFFHYLNDTHGNIYSLEAFASLGEMYVND 220
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare
complex, VTI1A, VAMP4, transport protein; 2.50A {Homo
sapiens}
Length = 82
Score = 28.2 bits (63), Expect = 0.60
Identities = 9/76 (11%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 138 GSQQLQQQRQQDFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAH 197
GS + Q++ + + I + + + +G + +Q +++
Sbjct: 1 GSHMASMTGGNNMG-----RMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHE 55
Query: 198 VERTEAYVSDGNTQLK 213
+E T++ + + +L
Sbjct: 56 LESTQSRLDNVMKKLA 71
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 29.5 bits (65), Expect = 0.92
Identities = 23/202 (11%), Positives = 60/202 (29%), Gaps = 7/202 (3%)
Query: 12 KRMVNLLGTAQDS-SDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQCKMQ 70
+L A + K + L K + + + + +
Sbjct: 499 TNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTM-QGSEVVNV 557
Query: 71 KERLADDFSTALNAFQDVQKLAHKKESDQIKKTKVISKLPPPPGRQAVSGEEFGDRTQDQ 130
+ L + + ++ D K +A+S E
Sbjct: 558 LKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGL 617
Query: 131 LIELQDNGSQQLQ-----QQRQQDFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVH 185
++Q++ +Q Q Q+F ++++ + ++ ++ F EL A +
Sbjct: 618 TTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLK 677
Query: 186 DQGELIDSIEAHVERTEAYVSD 207
+ + + + + R + SD
Sbjct: 678 EGTKFYNELTEILVRFQNKCSD 699
>1dj2_A Adenylosuccinate synthetase; GDP, ligase; HET: GDP; 2.90A
{Arabidopsis thaliana} SCOP: c.37.1.10 PDB: 1dj3_A*
Length = 443
Score = 29.0 bits (66), Expect = 1.5
Identities = 9/50 (18%), Positives = 22/50 (44%)
Query: 166 LESDIRDVNQIFKELGAMVHDQGELIDSIEAHVERTEAYVSDGNTQLKDA 215
L+ + D F+ E +++ + + +R E Y++D + D+
Sbjct: 180 LDLLLSDAAARFQGFKYTPEMLREEVEAYKRYADRLEPYITDTVHFINDS 229
>2dll_A Interferon regulatory factor 4; IRF domain, NF-EM5, multiple
myeloma oncogene 1, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 121
Score = 27.2 bits (60), Expect = 2.2
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 67 CKMQKERLADDFSTALNAFQDVQKLAHKKESDQIKKTKVISKLPPPPGR 115
K R ALN D ++L + + D KV +P
Sbjct: 75 PPTWKTR----LRCALNKSNDFEELVERSQLDISDPYKVYRIVPESGPS 119
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 2.5
Identities = 35/235 (14%), Positives = 66/235 (28%), Gaps = 79/235 (33%)
Query: 1 MVSNILRISSMKRMVNLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTP---- 56
+V ++++ S+ L + + D + +TQ L + L+ ++TP
Sbjct: 183 LVGDLIKFSAET----LSELIRTTLDAEK------VFTQGL--NILEWLENPSNTPDKDY 230
Query: 57 LPSSP-S------EQ--------RQCKMQKERLADDFSTALNAFQDVQKLAHKKESDQIK 101
L S P S Q + L A Q + A
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV-TA--------- 280
Query: 102 KTKVISKLPPPPGRQAVSGEEFGDRTQDQLIELQDNGSQQLQQQRQQDF-INLREAEEQE 160
I+ + S E F + + L F I +R E
Sbjct: 281 --VAIA--------ETDSWESFFVSVRKAITVL---------------FFIGVRC---YE 312
Query: 161 QA-IRQLESDIRDVNQIFKELGA-----MVHDQGELIDSIEAHVERTEAYVSDGN 209
L I + E M+ + ++ +V +T +++ G
Sbjct: 313 AYPNTSLPPSIL---EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP,
transferase; HET: ATP; 2.50A {Escherichia coli} SCOP:
a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Length = 687
Score = 28.2 bits (64), Expect = 2.5
Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 1 MVSNILRISSMKRMVNLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQL 52
V R + +KR + + +S ++ L +IQ + ++ + + +L
Sbjct: 50 KV----RFAELKRRIIISEEQGSNSHSRHLLGKIQSRVLKADQEFDGLYNEL 97
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 27.6 bits (60), Expect = 4.2
Identities = 9/95 (9%), Positives = 27/95 (28%)
Query: 128 QDQLIELQDNGSQQLQQQRQQDFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQ 187
L +N L+ Q+ + + A+ + + +L A+ D
Sbjct: 40 NRLPPTLDENSLAPLKSLSQKQITLSGQMNTEMSALDATKKGMILEPTDLAKLFALKQDL 99
Query: 188 GELIDSIEAHVERTEAYVSDGNTQLKDAAMYTVSR 222
+ ++ ++ ++ K +
Sbjct: 100 QIQFKQLSLLHNEIQSILNPQHSAPKPNVALVLKS 134
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 27.5 bits (62), Expect = 4.4
Identities = 8/23 (34%), Positives = 8/23 (34%), Gaps = 2/23 (8%)
Query: 186 DQGELIDSIEAHVERTEAYVSDG 208
D G LI H E E V
Sbjct: 313 DVGPLIS--VEHAEWVEKVVEKA 333
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.340
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,209,407
Number of extensions: 180795
Number of successful extensions: 466
Number of sequences better than 10.0: 1
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 86
Length of query: 231
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 141
Effective length of database: 4,188,903
Effective search space: 590635323
Effective search space used: 590635323
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.1 bits)