RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15784
         (231 letters)



>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 196

 Score = 67.9 bits (165), Expect = 1e-14
 Identities = 23/180 (12%), Positives = 61/180 (33%), Gaps = 9/180 (5%)

Query: 8   ISSMKRMVNLLGTAQDSSDTKSQLYQIQHYTQQLAKDTNHILKQLNDTPLPSSPSEQRQC 67
           I+ +  +   L T  +        + + ++  Q       +  ++               
Sbjct: 25  INQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKS--AQRDGIHDTNK 82

Query: 68  KMQKERLADDFSTALNAFQDVQKLAHKKESDQIKKTKVISKLPPPPGRQAVSGEEFGDRT 127
           + Q E     F   +  ++ V     ++  +Q K+  +I +          +  + G + 
Sbjct: 83  QAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQ 142

Query: 128 QDQLIELQDNGSQQLQQQRQQDFINLREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQ 187
                 L          +R +    L E + + Q + +LE  + ++ Q+F ++  +V +Q
Sbjct: 143 IFSQALLN-------ANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ 195


>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco
           (Nicotiana tabacum) [TaxId: 4097]}
          Length = 197

 Score = 24.8 bits (54), Expect = 8.0
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 149 DFIN-LREAEEQEQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIE 195
            F++   + +  E+  +++E+       +    G  + D   LID IE
Sbjct: 5   QFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIE 52


>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 417

 Score = 25.3 bits (55), Expect = 8.4
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 160 EQAIRQLESDIRDVNQIFKELGAMVHDQGELIDSIEAH 197
            Q  + L + I DV  +F  L A +  +   I+ ++A 
Sbjct: 17  RQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQ 54


>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}
          Length = 524

 Score = 25.3 bits (54), Expect = 8.5
 Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 15/138 (10%)

Query: 61  PSEQRQCKMQKERLADDFST-----ALNAFQDVQKLAHKKESDQIKKTKVISKLPP--PP 113
           PS  ++     E L              + +   + +   E  ++  ++           
Sbjct: 382 PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLAT 441

Query: 114 GR-QAVSGEEFGDRTQDQLIELQDNGSQQLQQQRQQDFINLREAEEQ-EQAIRQLESDIR 171
            R +  S E       D L          L+ +   D  +L E +    +A+ +L   + 
Sbjct: 442 SRWRKFSREWIRTAKSDSLDI------SWLKDKDSIDADSLPEPDVLAAEAMGELVQALS 495

Query: 172 DVNQIFKELGAMVHDQGE 189
           +++ + +ELGA      +
Sbjct: 496 ELDALMRELGASDEADLQ 513


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.128    0.340 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 751,760
Number of extensions: 32616
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 23
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.6 bits)