RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15785
(542 letters)
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 106 bits (266), Expect = 7e-27
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 43/199 (21%)
Query: 344 KRAQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEG 403
R++ + F + QIQ KEAF + D++ DG ID+ +L +L SLG NP++ +
Sbjct: 1 MRSKISDLLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINK 60
Query: 404 MMGEAP---GPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTS 460
+ E ++F FLT+ +L+ D E+ ++ AF FD+D+ G I+ LR +L S
Sbjct: 61 LFEEIDAGNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKS 120
Query: 461 MGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREA-PIK 519
+G+R +DE EV+++ +E
Sbjct: 121 LGERLSDE---------------------------------------EVEKLLKEYDEDG 141
Query: 520 NGMFDYIEFTRILKHGAKD 538
+G DY EF +++K
Sbjct: 142 DGEIDYEEFKKLIKDSPTI 160
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 99.5 bits (248), Expect = 1e-24
Identities = 59/182 (32%), Positives = 91/182 (50%), Gaps = 44/182 (24%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGE----APGP 411
+ QI FKEAF++ D++ DG I ++L ++ SLG+NPT+ L+ M+ E G
Sbjct: 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 63
Query: 412 INFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVM 471
I+F FLTL +++ TD E+ IK AF FD D +G I+ LR ++T++G++ TDE
Sbjct: 64 IDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDE--- 120
Query: 472 NEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPIK-NGMFDYIEFTR 530
EVDEM REA + +G +Y EF +
Sbjct: 121 ------------------------------------EVDEMIREADVDGDGQINYEEFVK 144
Query: 531 IL 532
++
Sbjct: 145 MM 146
>gnl|CDD|217121 pfam02582, DUF155, Uncharacterized ACR, YagE family COG1723.
Length = 174
Score = 90.3 bits (225), Expect = 4e-21
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 59 IYFFQEGSLVAWNVSDLEIENLLEFLKQFEIKPYEKAVVLNEKELMNYTYSPNIKVSQLK 118
++ F+ G +V W +S+ E ++ L LK F +P + V E E ++ PN+K +++
Sbjct: 2 VFLFRYGVVVFWGLSEEEEKDFLSDLKSFASEPLPEPEV--ETEDYDFVIDPNLK-PRIE 58
Query: 119 RDSICLVENSPDDMLSKYTISNAMALSVKLGIWEAALDKYVDSIEYITE 167
D I L + D L IS+A+A SVKL ++E +D ++S E + E
Sbjct: 59 NDIIVLPSSDLLDKL---AISHALAQSVKLSVFEEQVDNLLESTEPLPE 104
Score = 80.3 bits (199), Expect = 1e-17
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 243 REVLQKTGQLFALRHSINLDSDLLDTPDFYWERDDLENLYLQTCNYFSISRRTKMISR 300
+E+L+ G+L +LRH INL SDLLDTPDF+W+ +LE LYL Y I R +++R
Sbjct: 117 KELLKLIGELLSLRHRINLYSDLLDTPDFFWDEPELEPLYLALREYLEIKERINVLNR 174
Score = 52.2 bits (126), Expect = 7e-08
Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 34/140 (24%)
Query: 189 IYFFQEGSLVAWNVSDLEIENLLEFLKQFEIKPYEKAVVLNEKELMNYTYSPNIRE---- 244
++ F+ G +V W +S+ E ++ L LK F +P + V E E ++ PN++
Sbjct: 2 VFLFRYGVVVFWGLSEEEEKDFLSDLKSFASEPLPEPEV--ETEDYDFVIDPNLKPRIEN 59
Query: 245 ---VLQKTGQL------FALRHSINLDSDLLDTPDFYWER------DDLENLY--LQTCN 287
VL + L AL S+ L +E + E L L
Sbjct: 60 DIIVLPSSDLLDKLAISHALAQSVKLS---------VFEEQVDNLLESTEPLPEELAKTG 110
Query: 288 YFSISRRT--KMISRIYICR 305
++SR+ K+I + R
Sbjct: 111 KLNLSRKELLKLIGELLSLR 130
>gnl|CDD|224637 COG1723, COG1723, Uncharacterized conserved protein [Function
unknown].
Length = 331
Score = 67.4 bits (165), Expect = 4e-12
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 243 REVLQKTGQLFALRHSINLDSDLLDTPDFYWERDDLENLYLQTCNYFSISRRTKMISR 300
+E+L++ G+LF LR SINL SD+LDTP+F+W LE LYL Y I+ R +++R
Sbjct: 223 KEILKQIGKLFLLRVSINLHSDILDTPEFFWSEPQLEPLYLAVREYLDINPRVNVLNR 280
Score = 60.8 bits (148), Expect = 4e-10
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 4 VVAFSTAQEYDIDNLKKGIVGKDLYELIEFDDNMQNGENSIQVIAKYQVGKEPRF--IYF 61
A+ TA Y + L K + LY + +D + ++ + F +F
Sbjct: 60 CTAYCTASGYRLKVLFKLLKKNGLYPSVYNED---------VLSLMPEMNTDEEFGEAFF 110
Query: 62 FQEGSLVAWNVSDLEIENLLEFLKQFEIKPYEKAVVLNEKELMNYTYSPNIKVSQLKRDS 121
F G +V W S+ E +N+L + + E P ++ + E E +Y + K ++ D
Sbjct: 111 FPYGVVVFWGFSESEEKNILRDITKAESNPLKEPEI--ETEEFHYNVTETEK-PRIFNDK 167
Query: 122 ICLVENSPDDMLSKYTISNAMALSVKLGIWEAALDKYVDSIEYITE 167
I L + ++ +K IS+A+A SVKL ++E ++D +D + I +
Sbjct: 168 IILRSS---NVFTKLAISHALAQSVKLSVFEESVDNTIDQTKPIPQ 210
Score = 38.5 bits (90), Expect = 0.006
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 470 VMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEV 509
V+N +L +L+D+L+ L+ H RLEW++I+LI +EV
Sbjct: 277 VLNRRLEVISDLLDILNEQLNHSHSTRLEWIVIILIGLEV 316
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 60.1 bits (146), Expect = 1e-10
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMG----EAPGPINFTM 416
Q + +EAF++ D + G ID ++L + SLG P + ++ M+ + G I+F
Sbjct: 15 QKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEE 74
Query: 417 FLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLN 476
FL + +L DP + I AF FD+D +G I+ + L+ + +G+ TDE+ L
Sbjct: 75 FLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEE-----LQ 129
Query: 477 HCLELVD 483
++ D
Sbjct: 130 EMIDEAD 136
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 43.7 bits (104), Expect = 5e-06
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 365 FKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA 408
+EAF + D++ DG I ++L L SLG+ +++ ++ M+ E
Sbjct: 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREV 45
Score = 34.1 bits (79), Expect = 0.016
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
++ AF FD+D G I+ + L+ L S+G+ ++E++
Sbjct: 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEI 38
Score = 30.2 bits (69), Expect = 0.37
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 365 FKEAFNMIDQNRDGFIDKEDLHDMLA 390
E +D++ DG ID E+ +++A
Sbjct: 38 IDEMIREVDKDGDGKIDFEEFLELMA 63
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 365 FKEAFNMIDQNRDGFIDKEDLHDMLASLG 393
+EAF + D++ DG+I E+L L SLG
Sbjct: 2 LREAFKLFDKDGDGYISAEELRKALRSLG 30
Score = 32.2 bits (74), Expect = 0.026
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMG 462
++ AF FD+D G I+ E LR+ L S+G
Sbjct: 2 LREAFKLFDKDGDGYISAEELRKALRSLG 30
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 40.1 bits (95), Expect = 4e-05
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 365 FKEAFNMIDQNRDGFIDKEDLHDMLASL 392
KEAF + D++ DG ID E+ D+L +L
Sbjct: 2 LKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 27.7 bits (63), Expect = 1.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSM 461
+K AF FD+D G I+ E ++LL ++
Sbjct: 2 LKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 37.4 bits (88), Expect = 4e-04
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 365 FKEAFNMIDQNRDGFIDKEDLHDMLASL 392
KEAF D++ DG I E+ ++L L
Sbjct: 2 LKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 26.6 bits (60), Expect = 2.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSM 461
+K AF FD+D G I+ E +ELL +
Sbjct: 2 LKEAFKEFDKDGDGKISFEEFKELLKKL 29
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 35.4 bits (82), Expect = 0.004
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 29/82 (35%)
Query: 371 MIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFGDRLQGTDP 430
++D++ DG+ID E+L +L +LG TD+ +
Sbjct: 2 LLDKDGDGYIDVEELRKLLKALGLKLTDE-----------------------------EV 32
Query: 431 EDVIKNAFGCFDEDNSGIINEE 452
E++I+ F D+D G I+ E
Sbjct: 33 EELIEADFNEIDKDGDGRISFE 54
Score = 27.7 bits (62), Expect = 2.2
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 441 FDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDL 484
D+D G I+ E LR+LL ++G + TDE+V E + +D
Sbjct: 3 LDKDGDGYIDVEELRKLLKALGLKLTDEEVE-ELIEADFNEIDK 45
Score = 27.7 bits (62), Expect = 2.7
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 365 FKEAFNMIDQNRDGFIDKEDLHDML 389
+ FN ID++ DG I E+ + +
Sbjct: 36 IEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 33.4 bits (78), Expect = 0.009
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 365 FKEAFNMIDQNRDGFIDKEDLHDML 389
K+ F D N DG I KE+L +L
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKRLL 25
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 31.3 bits (72), Expect = 0.096
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 377 DGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GPINFTMFLTLF 421
G I +E+L LA LG + +++ ++ + E G I+F F L
Sbjct: 2 KGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFCVLL 50
Score = 27.1 bits (61), Expect = 3.8
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 369 FNMIDQNRDGFIDKEDLHDMLASL 392
F D + DG I E+ +L L
Sbjct: 30 FREFDTDGDGKISFEEFCVLLQRL 53
>gnl|CDD|177643 PHA03415, PHA03415, putative internal virion protein; Provisional.
Length = 1019
Score = 33.1 bits (75), Expect = 0.40
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 338 RRATTKKRAQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPT 397
+ +TT K A A +A + E FN D N DG K + D+L + G T
Sbjct: 64 KLSTTDKVQAAAQETETAYILEAMDDDRDEMFNDFDPNFDG---KREAGDILNAHGIEDT 120
Query: 398 DDYLEGM 404
DD+LE +
Sbjct: 121 DDHLEAL 127
>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit. This
model describes the bacterial oxaloacetate decarboxylase
alpha subunit and its equivalents in archaea. The
oxaloacetate decarboxylase Na+ pump is the paradigm of
the family of Na+ transport decarboxylases that present
in bacteria and archaea. It a multi subunit enzyme
consisting of a peripheral alpha-subunit and integral
membrane subunits beta and gamma. The energy released by
the decarboxylation reaction of oxaloacetate is coupled
to Na+ ion pumping across the membrane [Transport and
binding proteins, Cations and iron carrying compounds,
Energy metabolism, Other].
Length = 582
Score = 32.8 bits (75), Expect = 0.51
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 16/80 (20%)
Query: 395 NPTDDYLEGMMGEAPGPINFTMFLTLFGDRLQGTD--PEDVIKNAFGCFDEDNSGIINEE 452
T YL+G G P PIN + + GD D P D+++ +
Sbjct: 358 KETKGYLKGEYGRTPAPINAELQRKILGDEKPIVDCRPADLLEPEL-------------D 404
Query: 453 RLRELLTSMGDRF-TDEDVM 471
+LR + G + EDV+
Sbjct: 405 KLRAEVREAGAEKNSIEDVL 424
>gnl|CDD|192194 pfam08991, DUF1903, Domain of unknown function (DUF1903). Members
of this family adopt a coiled coil structure, with two
antiparallel alpha-helices that are tightly strapped
together by two disulfide bridges at each end. The
protein sequence shows a cysteine motif, required for
the stabilisation of the coiled-coil-like structure.
Additional inter-helix hydrophobic contacts impart
stability to this scaffold. The precise function of this
eukaryotic domain is, as yet, unknown.
Length = 67
Score = 28.3 bits (63), Expect = 1.5
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 283 LQTC---NYFSISRRTKMISRIYIC-RRVTTSASRDEQSVCYSILTIIDSKMSSRK 334
+Q C N + SR +I +Y C + D +SVC +++ +M R+
Sbjct: 11 IQDCLQANGYDESRCEDVIDDLYRCCAKFYEQNGNDARSVCCPGPKLLELRMKKRE 66
>gnl|CDD|130130 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit,
Gram-positive. Operationally, topoisomerase IV is a
type II topoisomerase required for the decatenation step
of chromosome segregation. Not every bacterium has both
a topo II and a topo IV. The topo IV families of the
Gram-positive bacteria and the Gram-negative bacteria
appear not to represent a single clade among the type II
topoisomerases, and are represented by separate models
for this reason [DNA metabolism, DNA replication,
recombination, and repair].
Length = 637
Score = 31.0 bits (70), Expect = 2.0
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 199 AWNVSDLEIENLLEFLKQFEIKPYEKAVVLNEKELMNYTYSPNIREVLQ 247
AW SDLE+E++ + LK + ++ Y+ +N +L T +P R +++
Sbjct: 549 AW--SDLELESVKKKLKNYTLQRYKGLGEMNADQLWETTMNPETRTLVR 595
>gnl|CDD|223014 PHA03231, PHA03231, glycoprotein BALF4; Provisional.
Length = 829
Score = 30.7 bits (70), Expect = 2.3
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 345 RAQRATSNVF---AMF--DQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLG 393
R + SNVF +F Q F + N+ID +R+ F+ L + + LG
Sbjct: 621 RDELRDSNVFDLEEIFREYNLYKQRFYDIDNVIDNDRNAFVR--GLAEFMQGLG 672
>gnl|CDD|222203 pfam13531, SBP_bac_11, Bacterial extracellular solute-binding
protein. This family includes bacterial extracellular
solute-binding proteins.
Length = 224
Score = 29.9 bits (68), Expect = 3.1
Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 22/118 (18%)
Query: 141 AMALSVKLGIWEAALDKYVDSIEYITEVNGENSIQVIAKYQVGKEPRFIYFFQEGSLVAW 200
A AL K G+ +A DK V V GEN Q + G+ S
Sbjct: 119 AKALLEKAGLVDALEDKIV--------VLGENVRQALQFVASGEAD---AGIVYESEALA 167
Query: 201 NVSDLEIENLLEFLKQFEIKP--YEKAVVLNEKE------LMNYTYSPNIREVLQKTG 250
L++ + + I P Y AV+ K +++ SP + + +K G
Sbjct: 168 LGPGLDV---VYLPPELNIPPIDYPAAVLKGAKHPEAARAFLDFLLSPEAQAIFRKYG 222
>gnl|CDD|162980 TIGR02706, P_butyryltrans, phosphate butyryltransferase. Members
of this family are phosphate butyryltransferase, also
called phosphotransbutyrylase. In general, this enzyme
is found in butyrate-producing anaerobic bacteria,
encoded next to the gene for butyrate kinase. Together,
these two enzymes represent what may be the less common
of two pathways for butyrate production from
butyryl-CoA. The alternative is transfer of the CoA
group to acetate by butyryl-CoA:acetate CoA transferase.
Cutoffs for this model are set such that the homolog
from Thermotoga maritima, whose activity on butyryl-CoA
is only 30 % of its activity with acetyl-CoA, scores in
the zone between trusted and noice cutoffs [Energy
metabolism, Fermentation].
Length = 294
Score = 29.3 bits (66), Expect = 4.5
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 450 NEERLRELLTSMGDRFTDEDVMNEK--LNHCLELVDLLSSHLSD 491
+EE++ E+ +G D +++N L V L+S+ +D
Sbjct: 46 DEEKINEIAKKIGMNLDDVEIVNAPSPKKAALLAVRLVSTGKAD 89
>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional.
Length = 581
Score = 29.5 bits (67), Expect = 5.2
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 18/67 (26%)
Query: 204 DLEIENLLEFLKQFEIKPYEKAVVLNE-----------------KELMNYTYSPNIREVL 246
+L+++ +E L+ E P K L + +EL+ Y+P + E
Sbjct: 79 ELQVKRFMENLRALE-SPLAKYRALMDLQERNERLFYRVLIDNIEELLPIVYTPTVGEAC 137
Query: 247 QKTGQLF 253
QK G LF
Sbjct: 138 QKYGSLF 144
>gnl|CDD|227349 COG5016, COG5016, Pyruvate/oxaloacetate carboxyltransferase [Energy
production and conversion].
Length = 472
Score = 29.2 bits (66), Expect = 6.0
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 15/79 (18%)
Query: 395 NPTDDYLEGMMGEAPGPINFTMFLTLFGDRLQGTD--PEDVIKNAFGCFDEDNSGIINEE 452
T DY++G+ G P PIN + + GD + P D+++ +
Sbjct: 366 KETKDYVKGLYGRTPAPINAELIEKILGDEEKPITCRPADLLEPEL-------------D 412
Query: 453 RLRELLTSMGDRFTDEDVM 471
+L++ L + +EDV+
Sbjct: 413 KLKKELEELAIEEEEEDVL 431
>gnl|CDD|217032 pfam02436, PYC_OADA, Conserved carboxylase domain. This domain
represents a conserved region in pyruvate carboxylase
(PYC), oxaloacetate decarboxylase alpha chain (OADA),
and transcarboxylase 5s subunit. The domain is found
adjacent to the HMGL-like domain (pfam00682) and often
close to the biotin_lipoyl domain (pfam00364) of biotin
requiring enzymes.
Length = 198
Score = 28.3 bits (64), Expect = 9.4
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 24/84 (28%)
Query: 399 DYLEGMMGEAPGPINFTMFLTLFGDRLQGTDPEDVIKNAFG------CFDEDNSGIINEE 452
DYL+G G+ PG PE++ K C D ++ E
Sbjct: 83 DYLKGEYGQPPGGF-----------------PEELQKKVLKGEEPITCRPADLLEPVDLE 125
Query: 453 RLR-ELLTSMGDRFTDEDVMNEKL 475
+LR EL G + +DEDV++ L
Sbjct: 126 KLRAELEEKAGRKLSDEDVLSYAL 149
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.391
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,118,675
Number of extensions: 2825578
Number of successful extensions: 2752
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2741
Number of HSP's successfully gapped: 61
Length of query: 542
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 440
Effective length of database: 6,413,494
Effective search space: 2821937360
Effective search space used: 2821937360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.0 bits)