RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15785
(542 letters)
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 216 bits (552), Expect = 8e-68
Identities = 90/215 (41%), Positives = 119/215 (55%), Gaps = 41/215 (19%)
Query: 327 DSKMSSRKTAGRRATTKKRAQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLH 386
+ A + + K+RAQR+ SNVFAMF Q Q+Q FKEAF +IDQ++DGFI K D+
Sbjct: 21 GGDAPAAPPAPKPPSQKRRAQRSGSNVFAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIR 80
Query: 387 DMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNS 446
SLG+ T+ L+ M+ EAPGPINFTMFLT+FGDR+ GTD EDVI NAF FDE +
Sbjct: 81 ATFDSLGRLCTEQELDSMVAEAPGPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFDEGD- 139
Query: 447 GIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIM 506
G EE L+ LT+ G++F+ +
Sbjct: 140 GKCKEETLKRSLTTWGEKFSQD-------------------------------------- 161
Query: 507 IEVDEMYREAPI-KNGMFDYIEFTRILKHGAKDKD 540
EVD+ EAPI NG+ D +F +IL GAK++
Sbjct: 162 -EVDQALSEAPIDGNGLIDIKKFAQILTKGAKEEG 195
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 207 bits (530), Expect = 4e-65
Identities = 72/194 (37%), Positives = 105/194 (54%), Gaps = 39/194 (20%)
Query: 346 AQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMM 405
A +A S V Q QIQ KEAF+MID +RDGF+ KED+ + LG+ P D L M+
Sbjct: 1 ADKAASGVLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAML 60
Query: 406 GEAPGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRF 465
EAPGP+NFTMFL++F D+L GTD E+ I+NAF FDE + +N E +++LL +MGD F
Sbjct: 61 KEAPGPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNF 120
Query: 466 TDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPIKNGMFDY 525
+ E+ ++EAP++ G FDY
Sbjct: 121 NKD---------------------------------------EMRMTFKEAPVEGGKFDY 141
Query: 526 IEFTRILKHGAKDK 539
++FT ++K +++
Sbjct: 142 VKFTAMIKGSGEEE 155
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 202 bits (515), Expect = 9e-63
Identities = 78/202 (38%), Positives = 107/202 (52%), Gaps = 41/202 (20%)
Query: 342 TKKRAQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDDY 400
K+RA +SNVF+MFD+ +I++FKEAF +IDQN DG IDK+DL + A++G+ N ++
Sbjct: 4 AKRRAAEGSSNVFSMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEE 63
Query: 401 LEGMMGEAPGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTS 460
L+ M+ EA GPINFT+FLT+FG++L+G DPEDVI AF D D G I + L ELLT+
Sbjct: 64 LDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTT 123
Query: 461 MGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-K 519
G RFT E E+ M+ P
Sbjct: 124 GGGRFTPE---------------------------------------EIKNMWAAFPPDV 144
Query: 520 NGMFDYIEFTRILKHGAKDKDE 541
G DY ++ HG + E
Sbjct: 145 AGNVDYKNICYVITHGEDAEGE 166
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 188 bits (479), Expect = 9e-58
Identities = 120/182 (65%), Positives = 133/182 (73%), Gaps = 40/182 (21%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTM 416
FDQ+QIQ FKEAFNMIDQNRDGFIDKEDLHDMLAS+GKNPTD+YLEGMM EAPGPINFTM
Sbjct: 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAPGPINFTM 60
Query: 417 FLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLN 476
FLT+FG++L GTDPEDVI+NAF CFDE+ SG I+E+ LRELLT+MGDRFTDE
Sbjct: 61 FLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDE-------- 112
Query: 477 HCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILKHG 535
EVDEMYREAPI K G F+Y+EFTRILKHG
Sbjct: 113 -------------------------------EVDEMYREAPIDKKGNFNYVEFTRILKHG 141
Query: 536 AK 537
AK
Sbjct: 142 AK 143
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 185 bits (473), Expect = 9e-57
Identities = 73/182 (40%), Positives = 98/182 (53%), Gaps = 39/182 (21%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTM 416
Q Q+Q KEAF MIDQ+RDGFI EDL DM +SLG+ P DD L M+ E PG +NFT
Sbjct: 10 LSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTA 69
Query: 417 FLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLN 476
FLTLFG+++ GTDPED ++NAF FDED G I E+ L++LL +MGD F+ E
Sbjct: 70 FLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKE-------- 121
Query: 477 HCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPIKNGMFDYIEFTRILKHGA 536
E+ ++++AP+KN F+Y + I
Sbjct: 122 -------------------------------EIKNVWKDAPLKNKQFNYNKMVDIKGKAE 150
Query: 537 KD 538
+
Sbjct: 151 DE 152
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 155 bits (394), Expect = 2e-45
Identities = 45/177 (25%), Positives = 64/177 (36%), Gaps = 43/177 (24%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GPINFTM 416
Q+ FKEAF + D R GFI KE L +L G M EA G I F
Sbjct: 4 QVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPE 63
Query: 417 FLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLN 476
FL++ G R++ T ED+++ AF FD + +G I + L++ L ++GDR
Sbjct: 64 FLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPH-------- 115
Query: 477 HCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPIKNGMFDYIEFTRILK 533
E E + G Y F +
Sbjct: 116 -------------------------------EFAEFLGITETEKGQIRYDNFINTMF 141
Score = 37.5 bits (88), Expect = 0.003
Identities = 21/110 (19%), Positives = 32/110 (29%), Gaps = 40/110 (36%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKH 493
K AF FD + +G I +E L+ +L G R
Sbjct: 8 FKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPA------------------------- 42
Query: 494 HIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILKHGAKDKDEQ 542
+EM+ EA NG + EF ++ K +
Sbjct: 43 --------------AFNEMFNEADATGNGKIQFPEFLSMMGRRMKQTTSE 78
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 153 bits (388), Expect = 3e-44
Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 44/197 (22%)
Query: 342 TKKRAQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYL 401
+K R+ + + + + Q Q EAF++ D N DGF+D +L + +LG +
Sbjct: 2 SKNRSSLQSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREI 61
Query: 402 EGMMGEA----PGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLREL 457
++ E + + F + G+++ DP D IK AF FD+D++G I+ + LR +
Sbjct: 62 LDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRV 121
Query: 458 LTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAP 517
+G+ TDE E+ M E
Sbjct: 122 AKELGETLTDE---------------------------------------ELRAMIEEFD 142
Query: 518 I-KNGMFDYIEFTRILK 533
+ +G + EF I
Sbjct: 143 LDGDGEINENEFIAICT 159
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 145 bits (368), Expect = 1e-41
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 42/181 (23%)
Query: 360 AQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA-PGPINFTMFL 418
A +E F + D++ DG + E+L L SLGKNPT+ L + G+ + F
Sbjct: 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFK 61
Query: 419 TLFGDRLQ-GTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNH 477
T++ ++ T+ + +AF D++ +G I E LR+LL ++GD T
Sbjct: 62 TVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSS--------- 112
Query: 478 CLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILKHGA 536
EV+E+ +E + +G +Y F +L G
Sbjct: 113 ------------------------------EVEELMKEVSVSGDGAINYESFVDMLVTGY 142
Query: 537 K 537
Sbjct: 143 P 143
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 143 bits (363), Expect = 6e-41
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 41/174 (23%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTL 420
+K+AF++ D++ G I K + D+L + G+NPT + + P ++ FL +
Sbjct: 3 DDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQV 62
Query: 421 FGDRLQGTDPEDV--IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHC 478
P D F FD+D +G+I LR +LTS+G++ ++E
Sbjct: 63 LNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNE---------- 112
Query: 479 LELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPIKNGMFDYIEFTRIL 532
E+DE+ + P+K+GM +Y +F +++
Sbjct: 113 -----------------------------EMDELLKGVPVKDGMVNYHDFVQMI 137
Score = 52.9 bits (128), Expect = 1e-08
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 358 DQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP---GPINF 414
+ F + F + D++ G I +L +L SLG+ +++ ++ ++ P G +N+
Sbjct: 71 MPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDGMVNY 130
Query: 415 TMFLTL 420
F+ +
Sbjct: 131 HDFVQM 136
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 135 bits (343), Expect = 6e-38
Identities = 22/185 (11%), Positives = 51/185 (27%), Gaps = 40/185 (21%)
Query: 350 TSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP 409
S + ++ +++ G I ++ LG P+ + +
Sbjct: 2 ESVADIQQLEEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYG 61
Query: 410 GPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDED 469
+ + +L + D + + F FD + +G + + +++ +LT+ GD TD+
Sbjct: 62 DNLTYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQ- 120
Query: 470 VMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPIKNGMFDYIEFT 529
E + DY F
Sbjct: 121 --------------------------------------EAIDALNAFS-SEDNIDYKLFC 141
Query: 530 RILKH 534
+
Sbjct: 142 EDILQ 146
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 133 bits (336), Expect = 5e-37
Identities = 38/184 (20%), Positives = 68/184 (36%), Gaps = 47/184 (25%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA------PG 410
F +A +FKEAF + D+ D I + D+ +LG+NPT+ + ++G
Sbjct: 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAA 61
Query: 411 PINFTMFLTLFGDRLQGTDP--EDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDE 468
I F FL + D + FD++ +G + LR +L ++G++ T+E
Sbjct: 62 AITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEE 121
Query: 469 DVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPIKNGMFDYIEF 528
EV+E+ + NG +Y F
Sbjct: 122 ---------------------------------------EVEELMKGQEDSNGCINYEAF 142
Query: 529 TRIL 532
+ +
Sbjct: 143 VKHI 146
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 124 bits (313), Expect = 1e-33
Identities = 35/198 (17%), Positives = 69/198 (34%), Gaps = 50/198 (25%)
Query: 355 AMFDQAQIQNFKEAFNMID--QNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP--- 409
+ + +I+ +E F++ D RDG +D + D+L LG NPT+ + G
Sbjct: 1 SQLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMGE 60
Query: 410 GPINFTMFLTLFG--DRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTD 467
L ++ D AF FD + G+I+ +R +L +G+R T+
Sbjct: 61 KAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITE 120
Query: 468 EDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPIK---NGMFD 524
+ + ++++ I+ +G
Sbjct: 121 D---------------------------------------QCNDIFTFCDIREDIDGNIK 141
Query: 525 YIEFTRILKHGA-KDKDE 541
Y + + + G DK +
Sbjct: 142 YEDLMKKVMAGPFPDKSD 159
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 120 bits (304), Expect = 4e-32
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 44/191 (23%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPI 412
+ QI FKEAF++ D++ DG I ++L ++ SLG+NPT+ L+ M+ E G I
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 413 NFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMN 472
+F FLT+ +++ TD E+ I+ AF FD+D +G I+ LR ++T++G++ TDE
Sbjct: 65 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE---- 120
Query: 473 EKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRI 531
EVDEM REA I +G +Y EF ++
Sbjct: 121 -----------------------------------EVDEMIREADIDGDGQVNYEEFVQM 145
Query: 532 LKHGAKDKDEQ 542
+
Sbjct: 146 MTAKGGGGGAA 156
Score = 70.2 bits (173), Expect = 3e-14
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GP 411
M D + +EAF + D++ +G+I +L ++ +LG+ TD+ ++ M+ EA G
Sbjct: 77 MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 136
Query: 412 INFTMFLTLFGDRLQGTDP---EDVIKNAFGCFDEDNSGII 449
+N+ F+ + + G ++VI+N +
Sbjct: 137 VNYEEFVQMMTAKGGGGGAAARKEVIRNKIRAIGKMARVFS 177
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 115 bits (291), Expect = 1e-30
Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 47/184 (25%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP------G 410
F++ Q++ FKEAF + D+ DG I D++ +LG+NPT+ + ++G
Sbjct: 4 FNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSR 63
Query: 411 PINFTMFLTLFGDRLQ--GTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDE 468
++F FL + + G + F FD++ +G + LR +LT++G++ T+E
Sbjct: 64 RVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEE 123
Query: 469 DVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPIKNGMFDYIEF 528
EV+ + NG +Y F
Sbjct: 124 ---------------------------------------EVETVLAGHEDSNGCINYEAF 144
Query: 529 TRIL 532
+ +
Sbjct: 145 LKHI 148
Score = 51.1 bits (123), Expect = 5e-08
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP---GPI 412
Q +++ E F + D+ +G + +L +L +LG+ T++ +E ++ G I
Sbjct: 80 NRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCI 139
Query: 413 NFTMFLTL 420
N+ FL
Sbjct: 140 NYEAFLKH 147
Score = 34.9 bits (81), Expect = 0.021
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 36/108 (33%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKH 493
K AF FD G I + +++ ++G T+ E++ +L + SD+
Sbjct: 12 FKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNA-----------EVLKVLGNPKSDEL 60
Query: 494 HIRLEWMIIVLIMIEVDEMYREAPIKNGMFDYIEFTRILKHGAKDKDE 541
K+ D+ F +L+ AK++ +
Sbjct: 61 -------------------------KSRRVDFETFLPMLQAVAKNRGQ 83
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 115 bits (291), Expect = 1e-30
Identities = 36/185 (19%), Positives = 67/185 (36%), Gaps = 50/185 (27%)
Query: 360 AQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP-----GPINF 414
+ + K+ F + D+ G I K+ L D L ++G NPT+ ++ ++ +
Sbjct: 1 SATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTL 60
Query: 415 TMFLTLFGDRLQGTDP-----EDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDED 469
L + D + AF FD++++G ++ LR +LT +G++ TD
Sbjct: 61 DQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDA- 119
Query: 470 VMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEF 528
EVDE+ + + NG DY +F
Sbjct: 120 --------------------------------------EVDELLKGVEVDSNGEIDYKKF 141
Query: 529 TRILK 533
+
Sbjct: 142 IEDVL 146
Score = 52.2 bits (126), Expect = 3e-08
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 358 DQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GPIN 413
+A+ ++F +AF + D+ G + DL ML LG+ TD ++ ++ G I+
Sbjct: 78 TKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEID 137
Query: 414 FTMFLTL 420
+ F+
Sbjct: 138 YKKFIED 144
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 115 bits (290), Expect = 1e-30
Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 44/181 (24%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GPI 412
+ QI FKEAF + D++ DG I ++L ++ SLG+NPT+ L+ M+ E G I
Sbjct: 4 LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 63
Query: 413 NFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMN 472
+F FL+L +++ D E+ + AF FD D +G+I+ LR ++T++G++ TD+
Sbjct: 64 DFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDD---- 119
Query: 473 EKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRI 531
EVDEM REA I +G +Y EF R+
Sbjct: 120 -----------------------------------EVDEMIREADIDGDGHINYEEFVRM 144
Query: 532 L 532
+
Sbjct: 145 M 145
Score = 49.8 bits (120), Expect = 2e-07
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GP 411
M +Q + EAF + D++ +G I +L ++ +LG+ TDD ++ M+ EA G
Sbjct: 76 MKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGH 135
Query: 412 INFTMFLTL 420
IN+ F+ +
Sbjct: 136 INYEEFVRM 144
Score = 34.8 bits (81), Expect = 0.022
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 38/109 (34%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKH 493
K AF FD+D G I + L ++ S+G T+ ++ +
Sbjct: 12 FKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQD--------------------- 50
Query: 494 HIRLEWMIIVLIMIEVDEMYREAPIKNGMFDYIEFTRILKHGAKDKDEQ 542
++ EVD NG D+ EF ++ K++D +
Sbjct: 51 -----------MINEVD------ADGNGTIDFPEFLSLMARKMKEQDSE 82
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 111 bits (281), Expect = 3e-29
Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 43/181 (23%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPI 412
+ QI FKEAF + D++ G I +L ++ SLG +P++ + +M E I
Sbjct: 5 LTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAI 64
Query: 413 NFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMN 472
F+ FL L +L+ D E + AF FD++ G+I+ L+ +LTS+G++ TD
Sbjct: 65 EFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDA---- 120
Query: 473 EKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPIKNGMFDYIEFTRIL 532
EVDEM RE +G + +F +L
Sbjct: 121 -----------------------------------EVDEMLREVSDGSGEINIKQFAALL 145
Query: 533 K 533
Sbjct: 146 S 146
Score = 48.2 bits (116), Expect = 5e-07
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP---GPI 412
+ Q EAF + D+N DG I +L +L S+G+ TD ++ M+ E G I
Sbjct: 77 LKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVSDGSGEI 136
Query: 413 NFTMFLTL 420
N F L
Sbjct: 137 NIKQFAAL 144
Score = 35.9 bits (84), Expect = 0.010
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 38/109 (34%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKH 493
K AF FD+DNSG I+ L ++ S+G ++ +V +
Sbjct: 13 FKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVAD--------------------- 51
Query: 494 HIRLEWMIIVLIMIEVDEMYREAPIKNGMFDYIEFTRILKHGAKDKDEQ 542
+M E+D N ++ EF ++ K D +
Sbjct: 52 -----------LMNEIDVD------GNHAIEFSEFLALMSRQLKCNDSE 83
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 111 bits (281), Expect = 4e-29
Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 50/209 (23%)
Query: 330 MSSRKTAGRRATTKKRAQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDML 389
MS + A ++ R + Q Q +EAF++ D + G ID ++L +
Sbjct: 1 MSYKAKTVVSARRDQKKGRV------GLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAM 54
Query: 390 ASLGKNPTDDYLEGMMGEA----PGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDN 445
+LG P + ++ M+ E G I+F FLT+ ++ D + I AF FD+DN
Sbjct: 55 RALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDN 114
Query: 446 SGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLI 505
SG I + LR + +G+ T+E
Sbjct: 115 SGTITIKDLRRVAKELGENLTEE------------------------------------- 137
Query: 506 MIEVDEMYREAPI-KNGMFDYIEFTRILK 533
E+ EM EA + D EF RI+K
Sbjct: 138 --ELQEMIAEADRNDDNEIDEDEFIRIMK 164
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 106 bits (268), Expect = 1e-27
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 44/178 (24%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFTM 416
Q Q +EAF++ D + G ID ++L + +LG P + ++ M+ E G +NF
Sbjct: 4 QKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGD 63
Query: 417 FLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLN 476
FLT+ ++ D ++ I AF FD+D +G I+ + L+ + +G+ TDE
Sbjct: 64 FLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDE-------- 115
Query: 477 HCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILK 533
E+ EM EA +G EF RI+K
Sbjct: 116 -------------------------------ELQEMIDEADRDGDGEVSEQEFLRIMK 142
Score = 48.2 bits (116), Expect = 5e-07
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGP 411
M ++ + +AF + D + G I ++L + LG+N TD+ L+ M+ EA G
Sbjct: 72 MSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGE 131
Query: 412 INFTMFLTL 420
++ FL +
Sbjct: 132 VSEQEFLRI 140
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 105 bits (265), Expect = 5e-27
Identities = 40/190 (21%), Positives = 68/190 (35%), Gaps = 50/190 (26%)
Query: 357 FDQAQIQNFKEAFNMIDQ--NRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PG 410
Q +I + K+ F + D RDG +D L D+ LG NP ++ + +G
Sbjct: 3 LSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVF-AVGGTHKMGEK 61
Query: 411 PINFTMFLTLFGDRLQG-TDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDED 469
+ F FL + + AF FD + G I+ LR +LT++G+R +DE
Sbjct: 62 SLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDE- 120
Query: 470 VMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPIK---NGMFDYI 526
+VDE+ + ++ G Y
Sbjct: 121 --------------------------------------DVDEIIKLTDLQEDLEGNVKYE 142
Query: 527 EFTRILKHGA 536
+F + + G
Sbjct: 143 DFVKKVMAGP 152
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 102 bits (256), Expect = 1e-25
Identities = 42/202 (20%), Positives = 85/202 (42%), Gaps = 51/202 (25%)
Query: 340 ATTKKRAQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDD 399
A+ + A + + I FK AF+M D + G I ++L ++ LG+NPT +
Sbjct: 1 ASMTDQQAEARA----FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKE 56
Query: 400 YLEGMMGEA----PGPINFTMFLTLFGDRLQGT---DPEDVIKNAFGCFDEDNSGIINEE 452
L+ ++ E G I+F FL + +++ E+ + N F FD++ G I+ E
Sbjct: 57 ELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIE 116
Query: 453 RLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEM 512
L E+L + G+ T+E +++++
Sbjct: 117 ELGEILRATGEHVTEE---------------------------------------DIEDL 137
Query: 513 YREAPI-KNGMFDYIEFTRILK 533
+++ +G D+ EF ++++
Sbjct: 138 MKDSDKNNDGRIDFDEFLKMME 159
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 107 bits (268), Expect = 4e-25
Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 44/193 (22%)
Query: 346 AQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMM 405
+ N + QI FKEAF++ D++ DG I ++L ++ SLG+NPT+ L+ M+
Sbjct: 295 GHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 354
Query: 406 GEA----PGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSM 461
E G I+F FLT+ +++ TD E+ I+ AF FD+D +G I+ LR ++T++
Sbjct: 355 NEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL 414
Query: 462 GDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KN 520
G++ TDE EVDEM REA I +
Sbjct: 415 GEKLTDE---------------------------------------EVDEMIREADIDGD 435
Query: 521 GMFDYIEFTRILK 533
G +Y EF +++
Sbjct: 436 GQVNYEEFVQMMT 448
Score = 63.0 bits (153), Expect = 8e-11
Identities = 32/188 (17%), Positives = 60/188 (31%), Gaps = 46/188 (24%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTM 416
F A + + + + ++ + + ++ +L G+ + G I
Sbjct: 241 FKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELK---GIDFKEDGNILGHK 297
Query: 417 FLTLFGDRLQGTDPE-DVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKL 475
D+L T+ + K AF FD+D G I + L ++ S+G T+
Sbjct: 298 LEYNTRDQL--TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEA------- 348
Query: 476 NHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREA-PIKNGMFDYIEFTRILKH 534
E+ +M E NG D+ EF ++
Sbjct: 349 --------------------------------ELQDMINEVDADGNGTIDFPEFLTMMAR 376
Query: 535 GAKDKDEQ 542
KD D +
Sbjct: 377 KMKDTDSE 384
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 96.5 bits (241), Expect = 1e-23
Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 48/186 (25%)
Query: 357 FDQAQIQNFKEAFNMIDQN-RDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGP 411
+ Q FK AF++ DG I ++L ++ LG+NPT + L+ M+ E G
Sbjct: 12 LTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGT 71
Query: 412 INFTMFLTLFGDRLQGTD---PEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDE 468
++F FL + ++ E+ + + F FD++ G I+ E L+ +L + G+ T++
Sbjct: 72 VDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITED 131
Query: 469 DVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIE 527
+++E+ ++ +G DY E
Sbjct: 132 ---------------------------------------DIEELMKDGDKNNDGRIDYDE 152
Query: 528 FTRILK 533
F +K
Sbjct: 153 FLEFMK 158
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 97.3 bits (243), Expect = 1e-23
Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 47/187 (25%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFTM 416
+I KE F MID + G I ++L D L +G + ++ +M A G I++
Sbjct: 8 EIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGE 67
Query: 417 FLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLN 476
F+ L + E+ + +AF FD+D SG I + +++ G D
Sbjct: 68 FIAATV-HLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDI-------- 116
Query: 477 HCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILKHG 535
+D+M +E +G DY EF +++
Sbjct: 117 -------------------------------HIDDMIKEIDQDNDGQIDYGEFAAMMRKR 145
Query: 536 AKDKDEQ 542
+
Sbjct: 146 KGNGGIG 152
Score = 59.9 bits (146), Expect = 1e-10
Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 363 QNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GPINFTMFL 418
+N AF+ D++ G+I +++ G D +++ M+ E G I++ F
Sbjct: 82 ENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKEIDQDNDGQIDYGEFA 139
Query: 419 TLFGDRLQGTDPE-------DVIKNAFGCFDEDNSGIINEE 452
+ R +++A G D ++ +I
Sbjct: 140 AMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGY 180
Score = 28.0 bits (63), Expect = 5.8
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 364 NFKEAFNMIDQNRDGFIDKEDLH 386
N ++A ++D + I+ H
Sbjct: 161 NLRDALGLVDNGSNQVIEGYFKH 183
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 95.7 bits (239), Expect = 2e-23
Identities = 31/185 (16%), Positives = 66/185 (35%), Gaps = 49/185 (26%)
Query: 361 QIQNFKEAFNMID-QNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFT 415
Q++ + AF + G + + + +L LG T + ++ E G I+F
Sbjct: 11 QVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFD 70
Query: 416 MFLTL----FGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVM 471
F + G+ + + ++ AF +D++ +G I+ + +RE+L + + + E
Sbjct: 71 SFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSE--- 127
Query: 472 NEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTR 530
++D M E +G D+ EF
Sbjct: 128 ------------------------------------DLDAMIDEIDADGSGTVDFEEFMG 151
Query: 531 ILKHG 535
++ G
Sbjct: 152 VMTGG 156
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 95.3 bits (238), Expect = 3e-23
Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 49/183 (26%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFTM 416
+I+ +EAF D+++DG+I+ DL + + ++G PT+ L + + G ++F
Sbjct: 9 EIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDD 68
Query: 417 FLTLFGDRLQGTDPEDV----IKNAFGCFDEDNSGIINEERLRELLTS-MGDRFTDEDVM 471
F+ L G +L + + +++AF FD + G I+ LRE + + +G +
Sbjct: 69 FVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHR--- 125
Query: 472 NEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPIKN-GMFDYIEFTR 530
+++E+ R+ + G D+ EF R
Sbjct: 126 ------------------------------------DIEEIIRDVDLNGDGRVDFEEFVR 149
Query: 531 ILK 533
++
Sbjct: 150 MMS 152
Score = 46.8 bits (112), Expect = 2e-06
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 358 DQAQIQNFKEAFNMIDQNRDGFIDKEDLHD-MLASLGKNPTDDYLEGMMGEA----PGPI 412
D ++ ++AF D N DG I +L + M A LG +E ++ + G +
Sbjct: 83 DMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRV 142
Query: 413 NFTMFLTL 420
+F F+ +
Sbjct: 143 DFEEFVRM 150
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 90.7 bits (226), Expect = 1e-21
Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 47/180 (26%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFTM 416
+I KE FNMID ++ G I E+L L +G N + + +M A G I++
Sbjct: 25 EIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKE 84
Query: 417 FLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLN 476
F+ L + ED + AF FD+D SG I + L++ G D
Sbjct: 85 FIAA-TLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFG--VEDV-------- 133
Query: 477 HCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILKHG 535
++E+ R+ +G DY EF +++ G
Sbjct: 134 -------------------------------RIEELMRDVDQDNDGRIDYNEFVAMMQKG 162
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 90.3 bits (225), Expect = 4e-21
Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 47/180 (26%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFTM 416
+I N + F +D + G + +++ D L +G + ++ + G I++T
Sbjct: 55 EINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTD 114
Query: 417 FLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELL--TSMGDRFTDEDVMNEK 474
FL D+ Q ++V F FD D +G I+ E L+ + + + D+
Sbjct: 115 FLAATIDK-QTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDK------ 167
Query: 475 LNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILK 533
+D + +E + +G D+ EF ++
Sbjct: 168 ---------------------------------AIDSLLQEVDLNGDGEIDFHEFMLMMS 194
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 89.3 bits (222), Expect = 9e-21
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 11/120 (9%)
Query: 355 AMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PG 410
+ Q E F +D + G I +L+ L+S G + E ++ G
Sbjct: 19 SARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSG 78
Query: 411 PINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
I F F L L ++ F D G ++ +R L S G + +++
Sbjct: 79 EITFDEFKDLHHFILS-------MREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTF 131
Score = 60.0 bits (146), Expect = 1e-10
Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 360 AQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFT 415
I + +E F D + DG +D ++ L S G ++ + +M + G + F
Sbjct: 90 HFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFD 149
Query: 416 MFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIIN 450
++ L + ++N F +D + +G +
Sbjct: 150 DYVELSI-FVCR------VRNVFAFYDRERTGQVT 177
Score = 40.7 bits (96), Expect = 4e-04
Identities = 11/54 (20%), Positives = 19/54 (35%)
Query: 417 FLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
++ + + + F D D SG I+ L L+S G F+
Sbjct: 12 STGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATT 65
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 88.8 bits (221), Expect = 1e-20
Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 42/178 (23%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFTM 416
++ K F ++D++ G+I KE L L G + + ++ + G I++T
Sbjct: 50 DVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPYN-FDLLLDQIDSDGSGKIDYTE 108
Query: 417 FLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLN 476
F+ DR + +I AF FD DN G I L +L + +
Sbjct: 109 FIAAALDR--KQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVN--- 163
Query: 477 HCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILK 533
V M R+ +G D+ EF+ ++K
Sbjct: 164 -------------------------------RVKRMIRDVDKNNDGKIDFHEFSEMMK 190
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 87.9 bits (218), Expect = 3e-20
Identities = 35/207 (16%), Positives = 56/207 (27%), Gaps = 64/207 (30%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLH-----DMLASLGKNPTDDYLEGMMGEA------- 408
I+ K F+ +D N +G I +++ D+ A L P + EA
Sbjct: 18 WIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGM 77
Query: 409 --PGPINFTMFLTLFG----------DRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRE 456
I F FL + R + T + F FD+D SG I + +
Sbjct: 78 EYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKA 137
Query: 457 LLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREA 516
G + E + + +R
Sbjct: 138 YGKISGISPSQE---------------------------------------DCEATFRHC 158
Query: 517 PI-KNGMFDYIEFTRILKHGAKDKDEQ 542
+ G D E TR D +
Sbjct: 159 DLDNAGDLDVDEMTRQHLGFWYTLDPE 185
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 85.7 bits (213), Expect = 6e-20
Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 45/184 (24%)
Query: 358 DQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPIN 413
D +I+ + F +D + G + E+ + L +NP ++ ++ G ++
Sbjct: 1 DADEIKRLGKRFKKLDLDNSGSLSVEEFMSLP-ELQQNPL---VQRVIDIFDTDGNGEVD 56
Query: 414 FTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSM-GDRFTDEDVMN 472
F F+ D E ++ AF +D D G I+ L ++L M G+ D +
Sbjct: 57 FKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQ 116
Query: 473 EKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPIKN-GMFDYIEFTRI 531
VD+ A G + EF +
Sbjct: 117 -----------------------------------IVDKTIINADKDGDGRISFEEFCAV 141
Query: 532 LKHG 535
+
Sbjct: 142 VGGL 145
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 84.5 bits (210), Expect = 1e-19
Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 6/109 (5%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFTMFLTLF 421
+ F ID N DG + E++ ++ + L+ + G I+ F +
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 422 GD--RLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDE 468
G +D + +K + D D G + +E + G E
Sbjct: 63 GSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAE 111
Score = 36.4 bits (85), Expect = 0.006
Identities = 4/42 (9%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 435 KNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV---MNE 473
+ F D + G ++ E ++ ++ ++ +
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKS 44
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 86.0 bits (213), Expect = 1e-19
Identities = 34/220 (15%), Positives = 62/220 (28%), Gaps = 65/220 (29%)
Query: 349 ATSNVFAMFDQA-QIQNFKEAFNMIDQNRDGFIDKEDLH-----DMLASLGKNPTDDYLE 402
A S + + FD I K FN +D N +G I +++ ++ +LG P
Sbjct: 1 ANSKLTSDFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRH 60
Query: 403 GMMGEA---------PGPINFTMFLTLFG----------DRLQGTDPEDVIKNAFGCFDE 443
EA ++ ++ + + + T F D+
Sbjct: 61 KDAVEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDK 120
Query: 444 DNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIV 503
D +G I + + + G + E
Sbjct: 121 DQNGAITLDEWKAYTKAAGIIQSSE----------------------------------- 145
Query: 504 LIMIEVDEMYREAPI-KNGMFDYIEFTRILKHGAKDKDEQ 542
+ +E +R I ++G D E TR D
Sbjct: 146 ----DCEETFRVCDIDESGQLDVDEMTRQHLGFWYTMDPA 181
Score = 55.6 bits (134), Expect = 4e-09
Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GPINFTMFLTLF 421
F+++D++++G I ++ + G + + E G ++
Sbjct: 112 DALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQH 171
Query: 422 GDRLQGTDPED 432
DP
Sbjct: 172 LGFWYTMDPAC 182
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 81.3 bits (201), Expect = 5e-18
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 19/134 (14%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGK---------NPTDDYLEGMMG 406
++ K +D DGFI +ED + + K T +
Sbjct: 7 SERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVAD 66
Query: 407 EA----PGPINFTMFLTLFGDRLQGTDPED------VIKNAFGCFDEDNSGIINEERLRE 456
+ I+ D L E+ + C D D G ++ +
Sbjct: 67 QLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKA 126
Query: 457 LLTSMGDRFTDEDV 470
L ++G TD+
Sbjct: 127 FLQAVGPDLTDDKA 140
Score = 57.4 bits (139), Expect = 8e-10
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GPI 412
+ ++ ID ++DG++ + L ++G + TDD G I
Sbjct: 96 EKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQI 155
Query: 413 NFTMFLTLFGDRLQGTDPEDVIKNAFG 439
+ FL D L G + + +G
Sbjct: 156 SRDEFLVTVNDFLFGLEETALANAFYG 182
Score = 28.2 bits (63), Expect = 5.4
Identities = 19/124 (15%), Positives = 35/124 (28%), Gaps = 15/124 (12%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGD-RFTDEDVMNEKLNHCLELVDLLSSHLSDK 492
+K D G I+ E + + + E L + D L +
Sbjct: 16 MKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVR 75
Query: 493 HHIR--LEWMIIVLIMIEVDEMYREAPIKNGMFDYI-----------EFTRILK-HGAKD 538
+ L+ ++ +E M+D I EF L+ G
Sbjct: 76 ISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDL 135
Query: 539 KDEQ 542
D++
Sbjct: 136 TDDK 139
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 82.6 bits (204), Expect = 7e-18
Identities = 24/200 (12%), Positives = 54/200 (27%), Gaps = 50/200 (25%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDY------LEGMMGEAP----G 410
F E + D + G+++ ++L +++ L + ++ + + G
Sbjct: 14 TASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDG 73
Query: 411 PINFTMFLTLFGD--------RLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMG 462
I + R Q + + +D D+SG I E L+ L +
Sbjct: 74 KIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLL 133
Query: 463 DRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNG 521
++ + D M + +G
Sbjct: 134 EKANKTVDDTKLAE-------------------------------YTDLMLKLFDSNNDG 162
Query: 522 MFDYIEFTRILKHGAKDKDE 541
+ E R+L +
Sbjct: 163 KLELTEMARLLPVQENFLLK 182
Score = 80.3 bits (198), Expect = 4e-17
Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 19/150 (12%)
Query: 354 FAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPT--------DDYLEGMM 405
F + F + + D + GFI+ E+L + L L + +Y + M+
Sbjct: 94 FRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLML 153
Query: 406 GEAP----GPINFTMFLTL-------FGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERL 454
G + T L AF +D+D +G I+E L
Sbjct: 154 KLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENEL 213
Query: 455 RELLTSMGDRFTDEDVMNEKLNHCLELVDL 484
LL + ++ E +N + ++ L
Sbjct: 214 DALLKDLCEKNKQELDINNISTYKKNIMAL 243
Score = 41.8 bits (98), Expect = 3e-04
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 28/98 (28%)
Query: 363 QNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFG 422
+ F +AF + DQ+ +G+ID+ +L +L L + + + I
Sbjct: 191 KEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNI---------- 240
Query: 423 DRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTS 460
+ G + L +L++
Sbjct: 241 ------------------MALSDGGKLYRTDLALILSA 260
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 80.1 bits (198), Expect = 2e-17
Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 12/121 (9%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GPINFTM 416
IQ F +D++ +D ++ LA LG EG+ + G ++
Sbjct: 35 GIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEE 94
Query: 417 FLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELL-------TSMGDRFTDED 469
FL + E VI AF D G++ + LR + G+ DE
Sbjct: 95 FLRALRPPMS-QAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEV 153
Query: 470 V 470
+
Sbjct: 154 L 154
Score = 35.0 bits (81), Expect = 0.030
Identities = 16/110 (14%), Positives = 27/110 (24%), Gaps = 40/110 (36%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKH 493
+ F D D S ++ + R+ L +G
Sbjct: 39 LARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQA------------------------- 73
Query: 494 HIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILKHGAKDKDEQ 542
E + + R+ +G D EF R L+ E
Sbjct: 74 --------------EAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREA 109
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 78.9 bits (195), Expect = 3e-17
Identities = 31/197 (15%), Positives = 62/197 (31%), Gaps = 58/197 (29%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLA-----------SLGKNPTDDYLEGM 404
+ + + + F +D N DG +D+++L + L + + ++ +
Sbjct: 33 LTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHI 92
Query: 405 MGEA----PGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTS 460
+ G I ++ F+T+ D+ + + AF FD D SG I E L L
Sbjct: 93 LQSVDFDRNGYIEYSEFVTVCMDKQL-LLSRERLLAAFQQFDSDGSGKITNEELGRLFGV 151
Query: 461 MGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-K 519
DE ++ +E
Sbjct: 152 TE--VDDE---------------------------------------TWHQVLQECDKNN 170
Query: 520 NGMFDYIEFTRILKHGA 536
+G D+ EF +++
Sbjct: 171 DGEVDFEEFVEMMQKIC 187
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 79.5 bits (196), Expect = 2e-16
Identities = 14/112 (12%), Positives = 36/112 (32%), Gaps = 11/112 (9%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFTM 416
++ F + G +DL +LA + L+ + G +++
Sbjct: 120 DTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYIT 179
Query: 417 FLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDE 468
+ + + + F D +++G ++ + RE +G
Sbjct: 180 LVAV-------ANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSV 224
Score = 65.6 bits (160), Expect = 8e-12
Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 12/121 (9%)
Query: 362 IQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GPINFTMF 417
+ F ID N +G + +++ + LG + + + A + F+ +
Sbjct: 187 LAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSV-QDALFRYADEDESDDVGFSEY 245
Query: 418 LTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNH 477
+ L V++ + D D SG +++E ++++L + + +
Sbjct: 246 VHL-------GLCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSV 298
Query: 478 C 478
Sbjct: 299 V 299
Score = 52.5 bits (126), Expect = 1e-07
Identities = 21/209 (10%), Positives = 55/209 (26%), Gaps = 31/209 (14%)
Query: 363 QNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKN---PTDDYLEGMMGEAPGPINFTMFLT 419
Q K DQ D + + + L ++ + + L
Sbjct: 51 QEQKAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRLR 110
Query: 420 LFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV------MNE 473
L D ++ F SG + + L+++L D + + +
Sbjct: 111 PSKPMLSEEDTNI-LRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVEN 169
Query: 474 KLNHCLELVDLLSSHLS-----------DKH---HIRLEWMIIVLIMI------EVDEMY 513
+ + L++ D + + + + + D ++
Sbjct: 170 DTKGRMSYITLVAVANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALF 229
Query: 514 REAPI-KNGMFDYIEFTRILKHGAKDKDE 541
R A ++ + E+ + +
Sbjct: 230 RYADEDESDDVGFSEYVHLGLCLLVLRIL 258
Score = 43.6 bits (103), Expect = 9e-05
Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 360 AQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLG-KNPTDDYLEGMMGEAP----GPINF 414
+ + + D ++ G + KE++ +L E +++
Sbjct: 250 LCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSY 309
Query: 415 TMFLTL 420
F+ L
Sbjct: 310 QEFVML 315
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 75.9 bits (187), Expect = 2e-16
Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 27/133 (20%)
Query: 363 QNFKEAFNMIDQNRDGFIDKEDLHDMLASLG---------------KNPTDDYLEGMMGE 407
+ F DQ+ +G ID+ D ++ + +G+ G
Sbjct: 4 RRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGI 63
Query: 408 AP----GPINFTMFLTLFGDRLQGTDPE------DVIKNAFGCFDEDNSGIINEERLREL 457
A I F+T RL+ + A G D D G +
Sbjct: 64 ADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARA 123
Query: 458 LTSMGDRFTDEDV 470
LT+ G ++
Sbjct: 124 LTAFG--VPEDLA 134
Score = 42.8 bits (101), Expect = 6e-05
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 6/71 (8%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GPI 412
F + A + D + DG + D L + G +D G +
Sbjct: 92 FAEMARPFLHAALGVADTDGDGAVTVADTARALTAFG--VPEDLARQAAAALDTDGDGKV 149
Query: 413 NFTMFLTLFGD 423
T + F
Sbjct: 150 GETEIVPAFAR 160
Score = 33.6 bits (77), Expect = 0.077
Identities = 15/115 (13%), Positives = 27/115 (23%), Gaps = 25/115 (21%)
Query: 429 DPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSH 488
+ E I F FD+D +G I+ +M F +
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQA------------ 48
Query: 489 LSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILKHGAKDKDEQ 542
+ + A + EF +DK ++
Sbjct: 49 ------------LYGGAEALWQGLAGIADRDGDQRITREEFVTGAVKRLRDKPDR 91
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 76.3 bits (188), Expect = 2e-16
Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 28/136 (20%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDML----ASLGKNPTDD-----------YLEGMM 405
K+ F+ D + +G +++ D + GK+ + +
Sbjct: 5 ASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLA 64
Query: 406 GEAP----GPINFTMFLTLFGDRLQGTDPEDV-------IKNAFGCFDEDNSGIINEERL 454
EA G + F+ + + + +K G D++ G IN +
Sbjct: 65 KEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEF 124
Query: 455 RELLTSMGDRFTDEDV 470
LT++G + +
Sbjct: 125 AAWLTALG--MSKAEA 138
Score = 44.7 bits (106), Expect = 1e-05
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GPI 412
F++ K M D+N DG I+ ++ L +LG + + G +
Sbjct: 96 FNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALGM--SKAEAAEAFNQVDTNGNGEL 153
Query: 413 NFTMFLTLFGDRLQGTDPED 432
+ LT D G +
Sbjct: 154 SLDELLTAVRDFHFGRLDVE 173
Score = 30.5 bits (69), Expect = 0.94
Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 25/110 (22%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKH 493
+K F +D D +G + + + +
Sbjct: 9 LKKRFDRWDFDGNGALERADFEKEAQ--------------------HIAEAFGKDAGAAE 48
Query: 494 HIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILKHGAKDKDEQ 542
L D + +EA + +G +F R+ ++ ++ E
Sbjct: 49 VQTL----KNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEA 94
Score = 28.6 bits (64), Expect = 4.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEG 403
EAFN +D N +G + ++L + D L G
Sbjct: 139 AEAFNQVDTNGNGELSLDELLTAVRDFHFGRLDVELLG 176
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 75.0 bits (185), Expect = 4e-16
Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 12/115 (10%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNP-TDDYLEGMMGEA----PGPINFT 415
F +D++R G I +L L++ P + ++ +NF+
Sbjct: 5 DQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFS 64
Query: 416 MFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
F ++ +N F +D DNSG+I++ L++ L+ G R +D+
Sbjct: 65 EFTGVWKYITD-------WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFH 112
Score = 54.9 bits (133), Expect = 4e-09
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 360 AQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFT 415
I +++ F D++ G IDK +L L+ G +D + + ++ + G I F
Sbjct: 71 KYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFD 130
Query: 416 MFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIIN 450
F+ LQ + + F +D D G I
Sbjct: 131 DFIQGCI-VLQR------LTDIFRRYDTDQDGWIQ 158
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 76.4 bits (188), Expect = 5e-16
Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 11/116 (9%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPI 412
Q + F +D++R G ++ +L G + MM G I
Sbjct: 45 IPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHI 104
Query: 413 NFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDE 468
+F F+ ++ N F SG + + L +G
Sbjct: 105 SFYEFMAMYKFMEL-------AYNLFVMNARARSGTLEPHEILPALQQLGFYINQR 153
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 74.6 bits (184), Expect = 7e-16
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
Query: 358 DQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPIN 413
I+ E F +D N +G + +++ +LAS+G D + ++ G I
Sbjct: 34 INNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWD--INRILQALDINDRGNIT 91
Query: 414 FTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
+T F+ +K AF D+D G I++ + L+ + D+
Sbjct: 92 YTEFMAGCYRWKN--IESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKV--LDNNDI 144
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 71.5 bits (176), Expect = 9e-16
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGP 411
+ + Q +KEAF + D++ D + E+L ++ +LG NPT + ++ + G
Sbjct: 7 VLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGK 66
Query: 412 INFTMFLTLFGDRLQGTD 429
+ FLT+ + Q D
Sbjct: 67 FDQETFLTIMLEYGQEVD 84
Score = 36.5 bits (85), Expect = 0.002
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
K AF FD+DN + E L ++ ++G T + +
Sbjct: 16 YKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKI 52
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 72.9 bits (179), Expect = 6e-15
Identities = 17/166 (10%), Positives = 50/166 (30%), Gaps = 27/166 (16%)
Query: 330 MSSRKTAGRRATTKKRAQRATSNVFAM--FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHD 387
M+ R + + F + + + F+ D + DG ++ +++
Sbjct: 1 MTERLNEQNNESYRYLRSVGNQWQFNVEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLY 60
Query: 388 MLASLGKN--PTDDYLEGMMGEAP-----------GPINFTMFLTL----------FGDR 424
+ + TD+ +E M + ++ R
Sbjct: 61 WPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERR 120
Query: 425 LQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
+ + + + + D+D G ++ + L+ ++ + E
Sbjct: 121 GEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFD--VPQEAA 164
Score = 37.1 bits (86), Expect = 0.008
Identities = 13/114 (11%), Positives = 29/114 (25%), Gaps = 38/114 (33%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFT 415
++++D + DG +D ++L M+ + + +A
Sbjct: 121 GEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFD--VPQEAAYTFFEKA------- 171
Query: 416 MFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDED 469
D D SG + EL+ + +
Sbjct: 172 --------------------------DTDKSGKLERT---ELVHLFRKFWMEPY 196
Score = 30.6 bits (69), Expect = 0.90
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMG 406
F D ++ G +++ +L + P D +G+
Sbjct: 165 YTFFEKADTDKSGKLERTELVHLFRKFWMEPYDPQWDGVYA 205
Score = 30.2 bits (68), Expect = 1.1
Identities = 12/109 (11%), Positives = 25/109 (22%), Gaps = 31/109 (28%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKH 493
+ F FD D+ G + + + M D EK+
Sbjct: 38 LYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKM------------------ 79
Query: 494 HIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILKHGAKDKDE 541
V + + ++ + A+ + E
Sbjct: 80 ------------RDAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERE 116
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 72.5 bits (178), Expect = 6e-15
Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 55/203 (27%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYL-EGMMGEAPGPINFT 415
F QA + F +D+N+ G++ + DL + +L NP D + E + ++F
Sbjct: 23 FSQASLLRLHHRFRALDRNKKGYLSRMDLQQIG-ALAVNPLGDRIIESFFPDGSQRVDFP 81
Query: 416 MFLTLFGDRLQGTDP----------------EDVIKNAFGCFDEDNSGIINEERLRELLT 459
F+ + D + + AF +D D G I+ + ++L
Sbjct: 82 GFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLR 141
Query: 460 SM-GDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI 518
M G + T+E + N D +EA
Sbjct: 142 LMVGVQVTEEQLEN-----------------------------------IADRTVQEADE 166
Query: 519 KN-GMFDYIEFTRILKHGAKDKD 540
G ++EFT+ L+ ++
Sbjct: 167 DGDGAVSFVEFTKSLEKMDVEQK 189
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 71.3 bits (175), Expect = 1e-14
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 21/129 (16%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTD---------DYLEGMMGEAP-- 409
+Q K FN ID ++DG I + D M K D L G+
Sbjct: 4 WVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTA 63
Query: 410 ----GPINFTMFLTLFGDRLQGTDPEDVIKN----AFGCFDEDNSGIINEERLRELLTSM 461
I+ T F+ + ++ + + V++ F D + I+ + +
Sbjct: 64 VAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGML 123
Query: 462 GDRFTDEDV 470
G
Sbjct: 124 G--LDKTMA 130
Score = 43.6 bits (103), Expect = 4e-05
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 7/87 (8%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GPI 412
F +D N D I +++ LG G +
Sbjct: 88 AKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG--LDKTMAPASFDAIDTNNDGLL 145
Query: 413 NFTMFLTLFGDRLQGTDPEDVIKNAFG 439
+ F+ D D + K +G
Sbjct: 146 SLEEFVIAGSDFF-MNDGDSTNKVFWG 171
Score = 32.0 bits (73), Expect = 0.27
Identities = 13/108 (12%), Positives = 23/108 (21%), Gaps = 27/108 (25%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKH 493
+K F D D G I + + + L
Sbjct: 8 MKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMD---------------- 51
Query: 494 HIRLEWMIIVLIMIEVDEMYREAPIKNGMFDYIEFTRILKHGAKDKDE 541
+ V + + A D F +K K+ +
Sbjct: 52 -----------SLTGVWDNFLTAVAGGKGIDETTFINSMKEMVKNPEA 88
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 67.5 bits (166), Expect = 2e-14
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFTM 416
Q Q KEAF++ D N+ G ID +L + +LG + + +M E G I F
Sbjct: 5 QKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDD 64
Query: 417 FLTLFGDRLQGTD 429
FL + ++++ D
Sbjct: 65 FLDIMTEKIKNRD 77
Score = 37.1 bits (87), Expect = 0.001
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
IK AF FD + +G I+ L+ + ++G ++
Sbjct: 9 IKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEI 45
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 67.6 bits (166), Expect = 2e-14
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGP 411
+ I FK AF+M D + G I ++L ++ LG+NPT + L+ ++ E G
Sbjct: 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGT 72
Query: 412 INFTMFLTLFGDRLQ 426
I+F FL + +++
Sbjct: 73 IDFEEFLVMMVRQMK 87
Score = 39.5 bits (93), Expect = 2e-04
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 429 DPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
+ K AF FD D G I+ + L ++ +G T E++
Sbjct: 17 EMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEEL 58
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.9 bits (183), Expect = 3e-14
Identities = 76/539 (14%), Positives = 165/539 (30%), Gaps = 164/539 (30%)
Query: 72 VSDLEIENLLEFLKQFEIKPYEKAVVLNEKELMNYTYSPNIKVSQLKRDSICLVENSPDD 131
V + + +++ + K +L+++E+ + S + VS R L + ++
Sbjct: 30 VDNFDCKDVQDMPKS----------ILSKEEIDHIIMSKD-AVSGTLRLFWTL-LSKQEE 77
Query: 132 MLSKYTISNAMALSVKLGIWEA----ALDKYVDSIEYITEVNG-ENSIQVIAKYQVGKEP 186
M+ K+ + + ++ K + + + YI + + N QV AKY V +
Sbjct: 78 MVQKF-VEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 187 RFIYFFQEGSLVAWNVSDLEIENLLEFLKQFEIKPYEKAVVLN-----EKELMNYTYSPN 241
+ L++ L E++P K V+++ K +
Sbjct: 136 PY----------------LKLRQALL-----ELRP-AKNVLIDGVLGSGKTWV------- 166
Query: 242 IREVLQKTGQLFALRHSINLDSDLLDTPDF--YWERDDLENLYLQTCNYFSISRRTKMIS 299
+V + DF +W L L+ CN S +M+
Sbjct: 167 ALDVCL--------------SYKVQCKMDFKIFW-------LNLKNCN--SPETVLEMLQ 203
Query: 300 RIYICRRVTTS-ASRDEQSVCYSILTIIDSKMSSRKTAGRRATTKKRAQRA--------T 350
+ + ++ + SR + S + ++ S + RR K +
Sbjct: 204 K--LLYQIDPNWTSRSDHSSNIKL------RIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 351 SNVFAMFD----------QAQIQNFKEAFNM----IDQNRDGFIDKEDLHDMLAS-LGKN 395
+ + F+ Q+ +F A +D + E +L L
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCR 314
Query: 396 PTDDYLE---------GMMGEA--PGPINFTMFLTLFGDRLQGT--------DPEDVIKN 436
P D E ++ E+ G + + + D+L +P + K
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 437 --AFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCL----------ELVDL 484
F I L L+ + V+N+ + L + +
Sbjct: 375 FDRLSVFPPSAH--IPTILL-SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 485 ---LSSHLSDK--HHIRLEWMIIVLIMIEVDEMYR----EAPIKNGMFDYIEFTRILKH 534
L L ++ H + ++ + + + I + Y ++ I H
Sbjct: 432 YLELKVKLENEYALHRSI---------VDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHH 480
Score = 53.3 bits (127), Expect = 2e-07
Identities = 88/578 (15%), Positives = 164/578 (28%), Gaps = 191/578 (33%)
Query: 26 DLYELIEFDDNMQNGENSIQVIAKYQVGKEPRFI-------------YFFQEG------- 65
+Y IE D + N QV AKY V + ++ +G
Sbjct: 110 RMY--IEQRDRLYND---NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 66 SLVAWNVSDLEIENLLEFLKQFEI---KPYEKAVVLNEKELMNYTYSPNIKVSQLKRDSI 122
+ +++ ++F K F + VL + + Y PN +I
Sbjct: 165 WVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 123 CLVENSPDDMLSKYTISN--AMALSVKLGIWEA----ALD-------------------- 156
L +S L + S L V L + A A +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 157 ---KYVDSIEYITEVNGENSIQVIAKY---QVGKEPRFIYFFQEG--------SLVAWNV 202
++ + + + ++ KY + PR E S++A ++
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR------EVLTTNPRRLSIIAESI 337
Query: 203 SDLEIENLLEFLKQFEIKPYEKAV-----VLNEKELMNYTYSPNIREVLQKTGQLFALRH 257
D + K + VL E R++ +L
Sbjct: 338 RDG--LATWDNWKHVNCDKLTTIIESSLNVLEPAEY---------RKMFD---RLSVFPP 383
Query: 258 SINLDSDLLDTPDFYW---ERDDLENLYLQTCNYFSISRRTKMISRIYICRRVTTSASRD 314
S ++ + LL W + D+ + + Y + ++ K S I I
Sbjct: 384 SAHIPTILLSL---IWFDVIKSDVMVVVNKLHKYSLVEKQPKE-STISI----------- 428
Query: 315 EQSVCYSILTIIDSKMSSRKTAGRRATTKKRAQRATSNVFAMFDQAQIQNFKEAFNMIDQ 374
SI + K+ + R ++D
Sbjct: 429 -----PSIYLELKVKLENEYALHRS-------------------------------IVDH 452
Query: 375 NRDGFIDKEDLHDMLASLGKNPTDDY--------LEGM-MGEAPGPINFTMFLTLFGD-R 424
D D L D Y L+ + E T+F +F D R
Sbjct: 453 YN--IPKTFDSDD----LIPPYLDQYFYSHIGHHLKNIEHPE-----RMTLFRMVFLDFR 501
Query: 425 -LQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSM---GDRFTDEDVMNEKLNHCLE 480
L+ I++ + I+N L + D D E+L +
Sbjct: 502 FLEQK-----IRHD-STAWNASGSILN------TLQQLKFYKPYICDNDPKYERLVN--A 547
Query: 481 LVDLLSSHLSDKHHIRLEWMIIVLI--MIEVDEMYREA 516
++D L +++ I ++ ++ I M E + ++ EA
Sbjct: 548 ILDFLPKI--EENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 42.1 bits (98), Expect = 4e-04
Identities = 45/284 (15%), Positives = 91/284 (32%), Gaps = 82/284 (28%)
Query: 1 HWNVVAFSTAQEYDIDNLKKGIVGKDLYE-LIEFDDNMQNGENSI--QVIAKYQVGKEPR 57
H N +T E ++ L+ + +++ L F + I +++
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEY-RKMFDRLSVFPPSAH-----IPTILLSLI------- 395
Query: 58 FIYFFQEGSLVAWNVSDLEIENLLEFLKQFEIKPYEKAVVLNEKELMNYTYSPNIKVSQL 117
W D+ +++ + + L EK+ T S + +
Sbjct: 396 ------------WF--DVIKSDVMVVVNKLHKYS------LVEKQPKESTIS----IPSI 431
Query: 118 KRDSICLVENSPD---DMLSKYTISNAMALSVKLGIWEAALDKYVDS-IEYITEVNGENS 173
+ +EN ++ Y I + + LD+Y S I +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY---LDQYFYSHIGH--------H 480
Query: 174 IQVIAKYQVGKEPRFIYF---FQEGSL----VAWNVSDLEIENLLEFLKQFEIKPYEKAV 226
++ I + R ++ F E + AWN S ++L L+Q + Y+ +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG----SILNTLQQLKF--YKPYI 534
Query: 227 VLNEKELMNYTYSPNIREVLQKTGQLFALRHSINL----DSDLL 266
N+ Y + +L F + NL +DLL
Sbjct: 535 CDNDP-----KYERLVNAILD-----FLPKIEENLICSKYTDLL 568
Score = 34.8 bits (79), Expect = 0.074
Identities = 44/309 (14%), Positives = 83/309 (26%), Gaps = 94/309 (30%)
Query: 230 EKELMNYTYSPNIREVLQKTGQLFALRHSINLDSDLLDTPDFYWERDDLENLYLQTCNYF 289
E Y Y +++L + + D D D +
Sbjct: 10 ETGEHQYQY----KDILS------VFEDAFVDNFDCKDVQDM-------------PKSIL 46
Query: 290 SISRRTKMISRIYICRRVTTSASRDEQSVCYSILTIIDSKMSS----------RKTAGRR 339
S + I I + S+D S + + SK R
Sbjct: 47 S----KEEIDHIIM--------SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 340 ATTKKRAQRATSNVFAMFDQA--QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPT 397
+ K QR S + M+ + ++ N + F + +R K L L L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQALLELRPAK- 151
Query: 398 DDY--LEGMMGEAPGPINFTMFLTLFG------DRLQGTDPEDVIKNAFGCFDEDNSGII 449
++G++G G D + K F F
Sbjct: 152 --NVLIDGVLG--------------SGKTWVALDVCL--SYKVQCKMDFKIF-------- 185
Query: 450 NEERLRELLTSMGDRFTDEDVMN--EKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMI 507
++ + + E V+ +KL + ++ S S +R+ + L +
Sbjct: 186 --------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 508 EVDEMYREA 516
+ Y
Sbjct: 238 LKSKPYENC 246
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 70.7 bits (173), Expect = 4e-14
Identities = 30/231 (12%), Positives = 58/231 (25%), Gaps = 55/231 (23%)
Query: 328 SKMSSRKTAGRRATTKKRAQRATSNVFAM-FDQAQIQNFKEAFNMIDQNRDGFIDKEDLH 386
K + G++A +K A Q E F D+N G + ++++
Sbjct: 12 DKGLASDKDGKKAKDRKEAWERIRQAIPREKTAEAKQRRIELFKKFDKNETGKLCYDEVY 71
Query: 387 D-MLASLGKNPTDDYLEGMMGEAP-------------GPINFTMFLTLFGDRLQGTDPED 432
L L + + + A G +F FL F L
Sbjct: 72 SGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLE-FRLMLCYIYDFF 130
Query: 433 VIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDK 492
+ F D + +++EE + + + +
Sbjct: 131 ELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVE----------------------- 167
Query: 493 HHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILKHGAKDKDEQ 542
+ +++E G + EF D D
Sbjct: 168 ---------------DPAALFKELDKNGTGSVTFDEFAAWASAVKLDADGD 203
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 67.0 bits (164), Expect = 7e-14
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPI 412
++++ FKE + D N +G ID L ML LG T L+ ++GE
Sbjct: 26 DLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETF 85
Query: 413 NFTMFLTLF 421
++ FL +
Sbjct: 86 SYPDFLRMM 94
Score = 37.3 bits (87), Expect = 0.002
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
K + FD + +G I+ L+ +L +G T ++
Sbjct: 34 FKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLEL 70
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 67.6 bits (165), Expect = 1e-13
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPI 412
++ FKE + D N +G ID L M+ LG T ++ M+ E I
Sbjct: 44 NLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTI 103
Query: 413 NFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSG 447
++ F+ + + + F+ +
Sbjct: 104 SYRDFVNMMLGKRSA------VLKLVMMFEGKANE 132
Score = 35.2 bits (81), Expect = 0.020
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 429 DPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
+ K + FD +N G I+ L+ ++ +G T ++
Sbjct: 47 EKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEM 88
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 68.6 bits (168), Expect = 2e-13
Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 17/144 (11%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYL-EGMMGEAPGPINFT 415
F +QI F +D+ +G + +ED + L NP D + E +NF
Sbjct: 23 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIP-ELAINPLGDRIINAFFSEGEDQVNFR 81
Query: 416 MFLTLFGDRLQGTDPE---------------DVIKNAFGCFDEDNSGIINEERLRELLTS 460
F+ D E + + AF +D D I+ + L ++L
Sbjct: 82 GFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRM 141
Query: 461 MGDRFTDEDVMNEKLNHCLELVDL 484
M ++ + + ++ D
Sbjct: 142 MVGVNISDEQLGSIADRTIQEADQ 165
Score = 37.4 bits (87), Expect = 0.006
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 30/91 (32%)
Query: 363 QNFKEAFNMIDQNRDGFIDKEDLHDML-ASLGKNPTDDYLEGMMGEAPGPINFTMFLTLF 421
AF + D ++D I +++L +L +G N +D+
Sbjct: 113 NKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDE---------------------- 150
Query: 422 GDRLQGTDPEDVIKNAFGCFDEDNSGIINEE 452
+ D+D I+
Sbjct: 151 -------QLGSIADRTIQEADQDGDSAISFT 174
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 61.0 bits (149), Expect = 4e-12
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFTM 416
+I KE F MID + G I ++L D L +G + ++ +M A G I++
Sbjct: 21 EIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGE 80
Query: 417 FLTL 420
F+
Sbjct: 81 FIAA 84
Score = 41.0 bits (97), Expect = 6e-05
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV---MNE 473
+K F D DNSG I + L++ L +G + ++ M+
Sbjct: 25 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDA 67
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 64.1 bits (156), Expect = 4e-12
Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 30/143 (20%)
Query: 356 MFDQAQIQNFKEAFN-MIDQNRDGFIDKEDLHDMLASLG---------------KNPTDD 399
Q FN D N DG I+ +D + + +
Sbjct: 5 QLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKL 64
Query: 400 YLEGMMGEAP----GPINFTMFLTLFGDRLQGTDPED--------VIKNAFGCFDEDNSG 447
+G+ A + +L ++ + ++ + + + F D
Sbjct: 65 IWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDN 124
Query: 448 IINEERLRELLTSMGDRFTDEDV 470
II++ + S G D
Sbjct: 125 IIDKHEYSTVYMSYG--IPKSDC 145
Score = 46.4 bits (110), Expect = 6e-06
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 6/87 (6%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GPI 412
+ + F++ D + D IDK + + S G + +
Sbjct: 103 LPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGI--PKSDCDAAFDTLSDGGKTMV 160
Query: 413 NFTMFLTLFGDRLQGTDPEDVIKNAFG 439
+F L+ + D + FG
Sbjct: 161 TREIFARLWTEYFVSNDRGAKGNHLFG 187
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 65.1 bits (158), Expect = 6e-12
Identities = 22/157 (14%), Positives = 51/157 (32%), Gaps = 27/157 (17%)
Query: 355 AMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGK--NPTDDYLEGMMGEAP--- 409
+ F F + + D + +G+I+ ++L D + K P D + + +
Sbjct: 3 SAFANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSF 62
Query: 410 ---------GPINFTMFLTLFG----------DRLQGTDPEDVIKNAFGCFDEDNSGIIN 450
G + + R D + +D D+SG I+
Sbjct: 63 MSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYIS 122
Query: 451 EERLRELLTSMGDRFT---DEDVMNEKLNHCLELVDL 484
L+ L + + + ++E + +++ D
Sbjct: 123 AAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDK 159
Score = 60.5 bits (146), Expect = 2e-10
Identities = 24/201 (11%), Positives = 49/201 (24%), Gaps = 53/201 (26%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNP--------TDDYLEGMMGE 407
F + + D + G+I +L + L L D+Y + MM
Sbjct: 97 EAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKI 156
Query: 408 A----PGPINFTMFLTLF-----------GDRLQGTDPEDVIKNAFGCFDEDNSGIINEE 452
G ++ + D + + + F +D +G +
Sbjct: 157 FDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGP 216
Query: 453 RLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEM 512
+ + M + + L+ E ++ D
Sbjct: 217 EVDGFVKDMMEL-VRPSISGGDLDKFREC-----------------------LLTHCDMN 252
Query: 513 YREAPIKNGMFDYIEFTRILK 533
K+G E L
Sbjct: 253 ------KDGKIQKSELALCLG 267
Score = 36.2 bits (83), Expect = 0.022
Identities = 7/69 (10%), Positives = 25/69 (36%)
Query: 344 KRAQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEG 403
+ + A + ++F++ F D +R G ++ ++ + + + G
Sbjct: 177 QENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGG 236
Query: 404 MMGEAPGPI 412
+ + +
Sbjct: 237 DLDKFRECL 245
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 60.7 bits (148), Expect = 7e-12
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 358 DQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPIN 413
D + KEAF + D++++G+I +L ++ +LG+ TD+ +E M+ EA G +N
Sbjct: 4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVN 63
Query: 414 FTMFLTLFGDRLQ--GTDPEDVIKNAF 438
+ F+ + G + ++ F
Sbjct: 64 YEEFVKMMMTVRGGGGGNGWSRLRRKF 90
Score = 51.1 bits (123), Expect = 2e-08
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 40/115 (34%)
Query: 428 TDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSS 487
TD E+ +K AF FD+D +G I+ LR ++ ++G++ TDE
Sbjct: 5 TDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDE------------------- 45
Query: 488 HLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILKHGAKDKDE 541
EV++M +EA + +G +Y EF +++
Sbjct: 46 --------------------EVEQMIKEADLDGDGQVNYEEFVKMMMTVRGGGGG 80
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 62.9 bits (153), Expect = 1e-11
Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 8/120 (6%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDD-YLEGMMGEAP----GP 411
+ + + F + + G + + +P+ + Y+E M G
Sbjct: 11 LSATECHQWYKKF--MTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGY 68
Query: 412 INFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVM 471
I+F ++ L+G + ++ F +D D +G I+ L ++ ++ + M
Sbjct: 69 IDFMEYVAALSLVLKGK-VDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAM 127
Score = 35.9 bits (83), Expect = 0.018
Identities = 11/87 (12%), Positives = 27/87 (31%), Gaps = 26/87 (29%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFGDRL 425
+ F + D + +G ID+ +L +++ ++ +
Sbjct: 91 RWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMT---------------------- 128
Query: 426 QGTDPEDVIKNAFGCFDEDNSGIINEE 452
E+ F D + G ++ E
Sbjct: 129 ----AEEFTNMVFDKIDINGDGELSLE 151
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 58.8 bits (143), Expect = 3e-11
Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPI 412
I + + F D N DG I +L D L +LG + T D + MM E G I
Sbjct: 5 DTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGFI 63
Query: 413 NFTMFLTLFGDRLQGTDPEDVIKNAF 438
+F F + F
Sbjct: 64 SFDEFTDFA---RANRGLVKDVSKIF 86
Score = 35.3 bits (82), Expect = 0.006
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDE--DVMNE 473
+ F FD + G I+ L + L ++G DE +M E
Sbjct: 13 RERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAE 54
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 61.7 bits (150), Expect = 3e-11
Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 7/131 (5%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----GPI 412
D AQ+Q + + F +++ G + + Y+E M I
Sbjct: 19 ADAAQLQEWYKKF--LEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTI 76
Query: 413 NFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMN 472
+F ++ L+GT E +K F +D+D +G I+ + L +++ S+ V
Sbjct: 77 DFLEYVAALNLVLRGT-LEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEV 135
Query: 473 EKLNHCLELVD 483
E L
Sbjct: 136 EAEQQGKLLTP 146
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 58.3 bits (141), Expect = 6e-11
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 4/94 (4%)
Query: 343 KKRAQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLE 402
A R + + F D + I +E+ + + TD+ +
Sbjct: 4 MATADRDILARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFD 63
Query: 403 GMMGEAP----GPINFTMFLTLFGDRLQGTDPED 432
+ E P G + + FL+ F T
Sbjct: 64 RLWNEMPVNAKGRLKYPDFLSRFSSETAATPMAT 97
Score = 45.9 bits (109), Expect = 2e-06
Identities = 16/101 (15%), Positives = 24/101 (23%), Gaps = 40/101 (39%)
Query: 431 EDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLS 490
I F FD + I+ E R + TDE
Sbjct: 23 YHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDE---------------------- 60
Query: 491 DKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTR 530
+ D ++ E P+ G Y +F
Sbjct: 61 -----------------QFDRLWNEMPVNAKGRLKYPDFLS 84
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 59.5 bits (144), Expect = 8e-11
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 10/98 (10%)
Query: 354 FAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----P 409
++++ FK + D N +G ID L ML LG T L+ ++ E
Sbjct: 39 NDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSE 98
Query: 410 GPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSG 447
+++ FL + I ++E N
Sbjct: 99 ETFSYSDFLRMM------LGKRSAILRMILMYEEKNKE 130
Score = 36.8 bits (85), Expect = 0.005
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
K + FD + +G I+ L+ +L +G T ++
Sbjct: 50 FKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLEL 86
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 56.7 bits (138), Expect = 1e-10
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 359 QAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINF 414
+A +++ + AF DQ+ DG I ++L +A LG+ + L+ M+ EA G +N+
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNY 61
Query: 415 TMFLTL 420
F +
Sbjct: 62 EEFARM 67
Score = 45.2 bits (108), Expect = 1e-06
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 40/106 (37%)
Query: 429 DPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSH 488
+ ++ AF FD+D G I + LR + +G E
Sbjct: 3 AGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQE-------------------- 42
Query: 489 LSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILK 533
E+D M REA + ++G +Y EF R+L
Sbjct: 43 -------------------ELDAMIREADVDQDGRVNYEEFARMLA 69
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 60.2 bits (146), Expect = 1e-10
Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 17/123 (13%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPT-----DDYLEGMMGEA--- 408
F F +DG ID ++L L G + M+
Sbjct: 27 FPGQTQDPLYGYFAA-VAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRD 85
Query: 409 -PGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTD 467
G + F F L+ + F FD D SG ++ + L++ LT+MG R +
Sbjct: 86 MSGTMGFNEFKELWAVLNG-------WRQHFISFDTDRSGTVDPQELQKALTTMGFRLSP 138
Query: 468 EDV 470
+ V
Sbjct: 139 QAV 141
Score = 53.6 bits (129), Expect = 2e-08
Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 360 AQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA--PGPINFTMF 417
A + +++ F D +R G +D ++L L ++G + + + G I F +
Sbjct: 100 AVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDY 159
Query: 418 LTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIIN 450
+ +L+ + ++F D G++N
Sbjct: 160 IACCV-KLRA------LTDSFRRRDTAQQGVVN 185
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 56.0 bits (136), Expect = 2e-10
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 365 FKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFTMFLTL 420
K F D+N+DG + ++ ++ + T + + E G +N F +
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSC 62
Score = 40.5 bits (96), Expect = 4e-05
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
K F FD++ G ++ + RE+ + FT ED+
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDI 39
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 59.4 bits (144), Expect = 3e-10
Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 8/124 (6%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDD-YLEGMMGEAP----GP 411
+ + F M G + +L G N + +++ + G
Sbjct: 16 VPTQETHVWYRTFMMEYP--SGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGF 73
Query: 412 INFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVM 471
++F F+ +Q E +K F +D D +G I++ L ++ ++ + +
Sbjct: 74 VDFLEFIAAVNLIMQEK-MEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLS 132
Query: 472 NEKL 475
E+
Sbjct: 133 PEEF 136
Score = 40.9 bits (96), Expect = 4e-04
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 34/131 (25%)
Query: 363 QNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFG 422
Q K F + D + +G IDK +L DM ++ + G+
Sbjct: 93 QKLKWYFKLYDADGNGSIDKNELLDMFMAVQA---------LNGQ--------------- 128
Query: 423 DRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELV 482
Q PE+ I F D +N G + E + D+D++ E + +
Sbjct: 129 ---QTLSPEEFINLVFHKIDINNDGELTLEEFINGMAK------DQDLL-EIVYKSFDFS 178
Query: 483 DLLSSHLSDKH 493
++L + K
Sbjct: 179 NVLRVICNGKQ 189
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 56.1 bits (136), Expect = 3e-10
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGP 411
M D + +EAF + D++ +G+I +L ++ +LG+ TD+ ++ M+ EA G
Sbjct: 22 MKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 81
Query: 412 INFTMFLTL 420
+N+ F+ +
Sbjct: 82 VNYEEFVQM 90
Score = 52.3 bits (126), Expect = 6e-09
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 41/122 (33%)
Query: 412 INFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVM 471
+ L F ++ TD E+ I+ AF D+D +G I+ LR ++T++G++ TDE
Sbjct: 10 GSSGENL-YFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDE--- 65
Query: 472 NEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREA-PIKNGMFDYIEFTR 530
EVDEM REA +G +Y EF +
Sbjct: 66 ------------------------------------EVDEMIREADIDGDGQVNYEEFVQ 89
Query: 531 IL 532
++
Sbjct: 90 MM 91
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 57.8 bits (140), Expect = 5e-10
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 17/116 (14%)
Query: 364 NFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPT-----DDYLEGMMGEA----PGPINF 414
+ F+ + +DG +D E+L L G N T + M+ G + F
Sbjct: 1 SVYTYFSAVA-GQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGF 59
Query: 415 TMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
F L+ L K F D+D SG + LR+ + MG R + + +
Sbjct: 60 NAFKELW-AALNA------WKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTL 108
Score = 52.0 bits (125), Expect = 4e-08
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 360 AQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA--PGPINFTMF 417
A + +KE F +DQ+ G ++ +L + +G + L ++ G I F +
Sbjct: 67 AALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDY 126
Query: 418 LTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIIN 450
+ +L+ + + F D G N
Sbjct: 127 VACCV-KLRA------LTDFFRKRDHLQQGSAN 152
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 57.2 bits (138), Expect = 9e-10
Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 30/138 (21%)
Query: 361 QIQNFKEAFN-MIDQNRDGFIDKEDLHDMLASLG---------------KNPTDDYLEGM 404
Q Q K F+ +D N DG I D DM+ + +D +
Sbjct: 6 QKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDL 65
Query: 405 MGEAP----GPINFTMFLTLFGDRLQGTDPED--------VIKNAFGCFDEDNSGIINEE 452
G A +++ +L ++ + I F D GI++ E
Sbjct: 66 KGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLE 125
Query: 453 RLRELLTSMGDRFTDEDV 470
+ + DV
Sbjct: 126 EFQNYCKNFQ--LQCADV 141
Score = 41.1 bits (96), Expect = 3e-04
Identities = 10/87 (11%), Positives = 22/87 (25%), Gaps = 7/87 (8%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPI 412
F +D + DG +D E+ + + + +
Sbjct: 99 LPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQL--QCADVPAVYNVITDGGKVTF 156
Query: 413 NFTMFLTLFGDRLQGTDPEDVIKNAFG 439
+ + L+ L + D G
Sbjct: 157 DLNRYKELYYRLL-TSPAADAGNTLMG 182
Score = 28.3 bits (63), Expect = 4.6
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP 409
+N+I D ++ L +P D +MG+ P
Sbjct: 142 PAVYNVITDGGKVTFDLNRYKELYYRLLTSPAADAGNTLMGQKP 185
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 57.0 bits (138), Expect = 9e-10
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 20/120 (16%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEG--------MMGEA---- 408
+++ F+ F + D + +L ++L + D +G M+
Sbjct: 2 EVRQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDT 60
Query: 409 PGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDE 468
G + F F L+ + + + + FD D SG I L + G +
Sbjct: 61 TGKLGFEEFKYLWNNIKK-------WQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEH 113
Score = 48.2 bits (115), Expect = 1e-06
Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 10/105 (9%)
Query: 360 AQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMM---GEAPGPINFTM 416
I+ ++ + D +R G I +L + G + + ++ + G ++F
Sbjct: 74 NNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGGNMDFDN 133
Query: 417 FLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSM 461
F++ RL + AF D+D +G I L +M
Sbjct: 134 FISCLV-RLDA------MFRAFKSLDKDGTGQIQVNIQEWLQLTM 171
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 59.7 bits (145), Expect = 1e-09
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 18/146 (12%)
Query: 347 QRATSNVFA--MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGM 404
+A A + Q + + + F ID+N DG +D+++L D + L +
Sbjct: 328 AQAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQ 387
Query: 405 MGE------------APGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEE 452
+ G I+++ F+T+ DR + +D +++AF FD+D +G I+ +
Sbjct: 388 IESEVDAILGAADFDRNGYIDYSEFVTVAMDR-KSLLSKDKLESAFQKFDQDGNGKISVD 446
Query: 453 RLRELLTSMGDRFTDEDVMNEKLNHC 478
EL + G + E ++
Sbjct: 447 ---ELASVFGLDHLESKTWKEMISGI 469
Score = 28.5 bits (64), Expect = 6.0
Identities = 4/52 (7%), Positives = 19/52 (36%)
Query: 434 IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLL 485
+ + F D++ G ++ + L + + + + + + ++
Sbjct: 348 LTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAA 399
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 59.7 bits (145), Expect = 1e-09
Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 21/144 (14%)
Query: 347 QRATSNVFA--MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGM 404
+A A + + + E F +D N DG +D+++L + D +
Sbjct: 313 AQAALLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLI 372
Query: 405 MGEAP------------------GPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNS 446
E G I ++ F+ DR + ++ AF FD+D S
Sbjct: 373 QNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIASAIDR-TILLSRERMERAFKMFDKDGS 431
Query: 447 GIINEERLRELLTSMGDRFTDEDV 470
G I+ + L +L + E++
Sbjct: 432 GKISTKELFKLFSQADSSIQMEEL 455
Score = 45.8 bits (109), Expect = 3e-05
Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 355 AMFDQAQIQN---FKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA--- 408
+ D+ + + + AF M D++ G I ++L + + + + LE ++ +
Sbjct: 406 SAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNN 465
Query: 409 -PGPINFTMFLTLF 421
G ++F F+ +
Sbjct: 466 KDGEVDFNEFVEML 479
Score = 30.4 bits (69), Expect = 1.5
Identities = 14/112 (12%), Positives = 29/112 (25%), Gaps = 26/112 (23%)
Query: 418 LTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNH 477
L +L D + F D +N G+++ + L + +
Sbjct: 317 LLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEG 376
Query: 478 CLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEF 528
I ++D + + +G +Y EF
Sbjct: 377 -------------------------STIEDQIDSLMPLLDMDGSGSIEYSEF 403
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 56.7 bits (137), Expect = 2e-09
Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 14/137 (10%)
Query: 357 FDQAQIQNFKEAF--------NMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA 408
+ +I F ++ + + E + + L NP + + + +
Sbjct: 14 LTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLP-ELKANPFKERICRVFSTS 72
Query: 409 P--GPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFT 466
P ++F FL L P+ AF FD D+ G +N E L L+ +
Sbjct: 73 PAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGE 132
Query: 467 DEDVMNEKLNHCLELVD 483
D + ++ +L+D
Sbjct: 133 DTRLSASEMK---QLID 146
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 58.9 bits (143), Expect = 2e-09
Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 21/149 (14%)
Query: 347 QRATSNVFA--MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGM 404
+A + Q + + F+ +D+N DG +D+ +L + L + D
Sbjct: 317 AQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLD 376
Query: 405 MGEAP---------------GPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGII 449
G I ++ F+T+ DR + + ++ AF FD DNSG I
Sbjct: 377 ASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDR-KTLLSRERLERAFRMFDSDNSGKI 435
Query: 450 NEERLRELLTSMGDRFTDEDVMNEKLNHC 478
+ EL T G D + L+
Sbjct: 436 SST---ELATIFGVSDVDSETWKSVLSEV 461
Score = 28.9 bits (65), Expect = 5.2
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 27/111 (24%)
Query: 418 LTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNH 477
L G +L D + F D++ G ++ L E + + M +
Sbjct: 321 LLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAV 380
Query: 478 CLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPIKNGMFDYIEF 528
E+ +L + ++ D KNG +Y EF
Sbjct: 381 EHEVDQVLDA-------------------VDFD--------KNGYIEYSEF 404
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 53.9 bits (130), Expect = 2e-09
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 355 AMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PG 410
A D ++ + F D NR G +++E+ + L P D E + G
Sbjct: 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPAD--AEAVFQRLDADRDG 76
Query: 411 PINFTMFLTLF 421
I F F F
Sbjct: 77 AITFQEFARGF 87
Score = 30.0 bits (68), Expect = 0.46
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 429 DPEDV--IKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
D E++ +++ F D + SG + E R L T + D
Sbjct: 22 DGEELARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADA 63
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 58.6 bits (142), Expect = 2e-09
Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 18/146 (12%)
Query: 347 QRATSNVFA--MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGM 404
+A + + + + F +D+N DG +DK++L + L +
Sbjct: 337 AQAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKN 396
Query: 405 MGE------------APGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEE 452
+ E G I ++ F+++ D+ Q E+ ++ AF FD D SG I +E
Sbjct: 397 VEEEVDNILKEVDFDKNGYIEYSEFISVCMDK-QILFSEERLRRAFNLFDTDKSGKITKE 455
Query: 453 RLRELLTSMGDRFTDEDVMNEKLNHC 478
EL G E N+ L
Sbjct: 456 ---ELANLFGLTSISEKTWNDVLGEA 478
Score = 30.1 bits (68), Expect = 2.2
Identities = 7/68 (10%), Positives = 25/68 (36%)
Query: 418 LTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNH 477
+ G +L + + + F D++ G ++++ L E + + + +
Sbjct: 341 ILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEE 400
Query: 478 CLELVDLL 485
++ +
Sbjct: 401 VDNILKEV 408
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 55.1 bits (133), Expect = 3e-09
Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 17/118 (14%)
Query: 362 IQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYL-----EGMMGEA----PGPI 412
+ F + +DG ID ++L L G M+ G +
Sbjct: 1 MDPLYGYFASVA-GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTM 59
Query: 413 NFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
F F L+ + F FD D SG ++ + L++ LT+MG R + V
Sbjct: 60 GFNEFKELWAVLNG-------WRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTV 110
Score = 52.0 bits (125), Expect = 4e-08
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 360 AQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA--PGPINFTMF 417
A + +++ F D +R G +D ++L L ++G + + G I F +
Sbjct: 69 AVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDY 128
Query: 418 LTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIIN 450
+ +L+ + ++F D G++N
Sbjct: 129 IACCV-KLRA------LTDSFRRRDSAQQGMVN 154
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 55.6 bits (134), Expect = 4e-09
Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA-----PGP 411
F + +IQ + + F + G + E+ + + + G
Sbjct: 22 FTEHEIQEWYKGF--LRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGT 79
Query: 412 INFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVM 471
I+F F+ +G E +K AF +D D +G I++ + E++ ++ + M
Sbjct: 80 IDFREFIIALSVTSRGK-LEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKM 138
Query: 472 NEKLNHCLELVD 483
E + + +
Sbjct: 139 PEDESTPEKRTE 150
Score = 34.8 bits (80), Expect = 0.035
Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 21/87 (24%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFGDRL 425
K AF+M D + +G+I K ++ +++ ++ + M ++
Sbjct: 102 KWAFSMYDLDGNGYISKAEMLEIVQAI---------------------YKMVSSVMKMPE 140
Query: 426 QGTDPEDVIKNAFGCFDEDNSGIINEE 452
+ PE + F D + G ++ E
Sbjct: 141 DESTPEKRTEKIFRQMDTNRDGKLSLE 167
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 51.8 bits (125), Expect = 7e-09
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNP-TDDYLEGMMGEA----PGPINFT 415
+ AF + D N DG ID ++ ++ +G+ P TD +E M EA G I+
Sbjct: 6 DEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIP 65
Query: 416 MFLTL 420
F+ L
Sbjct: 66 EFMDL 70
Score = 45.6 bits (109), Expect = 1e-06
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 39/114 (34%)
Query: 429 DPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSH 488
D E+ I AF FD + G+I+ + + ++ +G+ +
Sbjct: 5 DDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDA------------------- 45
Query: 489 LSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILKHGAKDKDE 541
EV+E +EA NG+ D EF ++K E
Sbjct: 46 -------------------EVEEAMKEADEDGNGVIDIPEFMDLIKKSKNALKE 80
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 54.8 bits (132), Expect = 8e-09
Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 10/137 (7%)
Query: 357 FDQAQIQNFKEAFNMIDQNR--DGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP----G 410
F +++ E F + + DG I KE+ L +N + + + + G
Sbjct: 31 FTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLAL-FRNRNRRNLFADRIFDVFDVKRNG 89
Query: 411 PINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMG---DRFTD 467
I F F+ G + +K AF +D +G I E L+E++ ++ +
Sbjct: 90 VIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLS 149
Query: 468 EDVMNEKLNHCLELVDL 484
ED++ ++ D
Sbjct: 150 EDMIEVMVDKAFVQADR 166
Score = 39.0 bits (91), Expect = 0.002
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 25/87 (28%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFGDRL 425
K AF + D + GFI++E+L +M+ +L L
Sbjct: 114 KFAFKLYDLRQTGFIEREELKEMVVALLHES-------------------------ELVL 148
Query: 426 QGTDPEDVIKNAFGCFDEDNSGIINEE 452
E ++ AF D N G I+ +
Sbjct: 149 SEDMIEVMVDKAFVQADRKNDGKIDID 175
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 54.5 bits (131), Expect = 1e-08
Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 11/130 (8%)
Query: 357 FDQAQIQNFKEAF--------NMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA 408
+ +I F ++ + + E + + L NP + + + +
Sbjct: 45 LTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLP-ELKANPFKERICRVFSTS 103
Query: 409 P--GPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFT 466
P ++F FL L P+ AF FD D+ G +N E L L+ +
Sbjct: 104 PAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGE 163
Query: 467 DEDVMNEKLN 476
D + ++
Sbjct: 164 DTRLSASEMK 173
Score = 37.1 bits (86), Expect = 0.006
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 24/101 (23%)
Query: 363 QNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFG 422
AF + D + DG +++EDL ++ + GE
Sbjct: 129 IKSHYAFRIFDFDDDGTLNREDLSRLVNC------------LTGEGEDT----------- 165
Query: 423 DRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGD 463
RL ++ + +I N D D G IN + +++ D
Sbjct: 166 -RLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPD 205
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 54.4 bits (131), Expect = 1e-08
Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 8/136 (5%)
Query: 357 FDQAQIQNFKEAFNMIDQNR--DGFIDKEDLHDMLASLGKNPT---DDYLEGMMGEAPGP 411
F ++I+ E F I DG I+KE+ L K + D + + G
Sbjct: 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGI 101
Query: 412 INFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTS---MGDRFTDE 468
+ F F +D I +F +D G I + +++++ + +
Sbjct: 102 LGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKD 161
Query: 469 DVMNEKLNHCLELVDL 484
V+ + ++ E D
Sbjct: 162 TVIEDIIDKTFEEADT 177
Score = 39.0 bits (91), Expect = 0.002
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 25/87 (28%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFGDRL 425
+F + D + GFI+++++ M+ + L G L
Sbjct: 125 HFSFQLYDLKQQGFIERQEVKQMVVAT-------------------------LAESGMNL 159
Query: 426 QGTDPEDVIKNAFGCFDEDNSGIINEE 452
+ T ED+I F D + G I++E
Sbjct: 160 KDTVIEDIIDKTFEEADTKHDGKIDKE 186
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 50.6 bits (122), Expect = 2e-08
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 365 FKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFTMFLTL 420
+ F D N DG I +L D L +LG D+ ++ MM E G I+F F++
Sbjct: 5 MERIFKRFDTNGDGKISLSELTDALRTLGSTSADE-VQRMMAEIDTDGDGFIDFNEFISF 63
Score = 38.3 bits (90), Expect = 4e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 431 EDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDE--DVMNE 473
D ++ F FD + G I+ L + L ++G DE +M E
Sbjct: 2 ADDMERIFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAE 46
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 51.6 bits (124), Expect = 3e-08
Identities = 17/148 (11%), Positives = 39/148 (26%), Gaps = 45/148 (30%)
Query: 401 LEGMMGEA----PGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRE 456
+ M+ E + L + +++ + + F + +I E LR
Sbjct: 5 EKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRR 64
Query: 457 LLTSMG-DRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYRE 515
+G + + E + M RE
Sbjct: 65 NSGILGIEGMSKE---------------------------------------DAQGMVRE 85
Query: 516 API-KNGMFDYIEFTRILKHGAKDKDEQ 542
+ +G + EF ++ + + E
Sbjct: 86 GDLDGDGALNQTEFCVLMVRLSPEMMED 113
Score = 44.3 bits (105), Expect = 1e-05
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLG-KNPTDDYLEGMMGEA----PG 410
M + + + F+++ I E L LG + + + +GM+ E G
Sbjct: 33 MDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDG 92
Query: 411 PINFTMFLTL 420
+N T F L
Sbjct: 93 ALNQTEFCVL 102
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 50.3 bits (121), Expect = 4e-08
Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 391 SLGKNPTDDYLEGMMGE--APGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGI 448
+ D + + A N+ F G D IK AF D+D SG
Sbjct: 2 AFSGILADADVAAALKACEAADSFNYKAFFAKVGLT---AKSADDIKKAFFVIDQDKSGF 58
Query: 449 INEERLRELLTSM---GDRFTDEDV 470
I E+ L+ L TD +
Sbjct: 59 IEEDELKLFLQVFSAGARALTDAET 83
Score = 44.2 bits (105), Expect = 7e-06
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 363 QNFKEAFNMIDQNRDGFIDKEDLHDMLASL---GKNPTDDYLEGMMGEA----PGPINFT 415
+ K+AF +IDQ++ GFI++++L L + TD + + G I
Sbjct: 42 DDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVD 101
Query: 416 MFLTL 420
+ L
Sbjct: 102 EWAAL 106
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 50.3 bits (121), Expect = 6e-08
Identities = 27/151 (17%), Positives = 40/151 (26%), Gaps = 48/151 (31%)
Query: 391 SLGKNPTDDYLEGMMGE--APGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGI 448
+ D ++ + A G N F L G + + +K F D D SG
Sbjct: 2 AAKDLLKADDIKKALDAVKAEGSFNHKKFFALVGLKA---MSANDVKKVFKAIDADASGF 58
Query: 449 INEERLRELLTSM---GDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLI 505
I EE L+ +L S G TD
Sbjct: 59 IEEEELKFVLKSFAADGRDLTDA------------------------------------- 81
Query: 506 MIEVDEMYREAPI-KNGMFDYIEFTRILKHG 535
E + A +G EF ++
Sbjct: 82 --ETKAFLKAADKDGDGKIGIDEFETLVHEA 110
Score = 46.8 bits (112), Expect = 9e-07
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 364 NFKEAFNMIDQNRDGFIDKEDLHDMLASL---GKNPTDDYLEGMMGEA----PGPINFTM 416
+ K+ F ID + GFI++E+L +L S G++ TD + + A G I
Sbjct: 43 DVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDE 102
Query: 417 FLTL 420
F TL
Sbjct: 103 FETL 106
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 49.6 bits (119), Expect = 9e-08
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNP---TDDYLEGMMGEA----PGPIN 413
K+ F ID ++ G++D ++L L + T+ + +M A G I
Sbjct: 39 SASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIG 98
Query: 414 FTMFLTL 420
F +
Sbjct: 99 ADEFQEM 105
Score = 42.7 bits (101), Expect = 2e-05
Identities = 20/146 (13%), Positives = 38/146 (26%), Gaps = 42/146 (28%)
Query: 391 SLGKNPTDDYLEGMMGE--APGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGI 448
S+ + + + + E P F G L +K+ F D D SG
Sbjct: 1 SITDILSAEDIAAALQECQDPDTFEPQKFFQTSG--LSKMSASQ-VKDIFRFIDNDQSGY 57
Query: 449 INEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIE 508
++ + L+ L + L++ E
Sbjct: 58 LDGDELKYFLQKFQS---------------------DARELTES---------------E 81
Query: 509 VDEMYREAPI-KNGMFDYIEFTRILK 533
+ A +G EF ++
Sbjct: 82 TKSLMDAADNDGDGKIGADEFQEMVH 107
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 48.4 bits (116), Expect = 1e-07
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 359 QAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNP------TDDYLEGMMGEA---- 408
+ AF +D N DG++ +L + +L + ++ A
Sbjct: 3 CKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNS 62
Query: 409 PGPINFTMFLTL 420
G I+ FL
Sbjct: 63 DGKISKEEFLNA 74
Score = 36.4 bits (85), Expect = 0.002
Identities = 9/104 (8%), Positives = 24/104 (23%), Gaps = 34/104 (32%)
Query: 431 EDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLS 490
+ ++ AF D + G + L+ + ++ ++
Sbjct: 6 KAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKE---------------- 49
Query: 491 DKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDYIEFTRILK 533
++ + A +G EF
Sbjct: 50 -----------------ASAKLIKMADKNSDGKISKEEFLNANA 76
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 51.0 bits (122), Expect = 1e-07
Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 8/132 (6%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA-----PGP 411
FD+ +IQ + + F G + +ED + + + + G
Sbjct: 22 FDRREIQQWHKGFLRDCP--SGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGF 79
Query: 412 INFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVM 471
I+F F+T+ +GT E+ + AF +D ++ G I + + ++ S+ +
Sbjct: 80 IHFEEFITVLSTTSRGT-LEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTL 138
Query: 472 NEKLNHCLELVD 483
NE V
Sbjct: 139 NEDEATPEMRVK 150
Score = 37.1 bits (86), Expect = 0.006
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 21/87 (24%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFGDRL 425
AF + D N DG+I +++ ++AS+ + M ++
Sbjct: 102 SWAFELYDLNHDGYITFDEMLTIVASV---------------------YKMMGSMVTLNE 140
Query: 426 QGTDPEDVIKNAFGCFDEDNSGIINEE 452
PE +K F D++ G I +
Sbjct: 141 DEATPEMRVKKIFKLMDKNEDGYITLD 167
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 48.8 bits (117), Expect = 1e-07
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 355 AMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNP---TDDYLEGMMGEA--- 408
+ + K+ F+++D+++ GFI++++L +L + + + +M
Sbjct: 33 VGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKD 92
Query: 409 -PGPINFTMFLTL 420
G I F TL
Sbjct: 93 GDGKIGVEEFSTL 105
Score = 48.4 bits (116), Expect = 2e-07
Identities = 23/146 (15%), Positives = 42/146 (28%), Gaps = 42/146 (28%)
Query: 391 SLGKNPTDDYLEGMMGE--APGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGI 448
S+ + + ++ +G A + F + G + D +K F D+D SG
Sbjct: 1 SMTDLLSAEDIKKAIGAFTAADSFDHKKFFQMVGLK---KKSADDVKKVFHILDKDKSGF 57
Query: 449 INEERLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIE 508
I E+ L +L + LS K E
Sbjct: 58 IEEDELGSILKGFSS---------------------DARDLSAK---------------E 81
Query: 509 VDEMYREAPI-KNGMFDYIEFTRILK 533
+ +G EF+ ++
Sbjct: 82 TKTLMAAGDKDGDGKIGVEEFSTLVA 107
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 48.4 bits (116), Expect = 2e-07
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 353 VFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNP---TDDYLEGMMGEA- 408
+ + KE F ++D ++ GFI++++L L T + + A
Sbjct: 31 QISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAAD 90
Query: 409 ---PGPINFTMFLTL 420
G I F +
Sbjct: 91 HDGDGKIGAEEFQEM 105
Score = 44.2 bits (105), Expect = 7e-06
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 8/85 (9%)
Query: 391 SLGKNPTDDYLEGMMGE--APGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGI 448
SL + + + + AP + F + G +K F D D SG
Sbjct: 1 SLTDILSPSDIAAALRDCQAPDSFSPKKFFQISGMS---KKSSSQLKEIFRILDNDQSGF 57
Query: 449 INEERLRELLTSM---GDRFTDEDV 470
I E+ L+ L T +
Sbjct: 58 IEEDELKYFLQRFESGARVLTASET 82
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 50.2 bits (120), Expect = 2e-07
Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMM-----GEAPGP 411
F + ++Q + + F + G +D + + G
Sbjct: 22 FTEKEVQQWYKGFIKDCPS--GQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGR 79
Query: 412 INFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVM 471
I F+ F+ +GT ++ ++ AF +D DN G I + +++ ++ + +
Sbjct: 80 IEFSEFIQALSVTSRGT-LDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVEL 138
Query: 472 NEKLNHCLELVD 483
E+ N + VD
Sbjct: 139 PEEENTPEKRVD 150
Score = 37.9 bits (88), Expect = 0.003
Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 21/87 (24%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFGDRL 425
+ AF + D + DG+I + ++ D++ ++ + M
Sbjct: 102 RWAFKLYDLDNDGYITRNEMLDIVDAI---------------------YQMVGNTVELPE 140
Query: 426 QGTDPEDVIKNAFGCFDEDNSGIINEE 452
+ PE + F D++ G + +
Sbjct: 141 EENTPEKRVDRIFAMMDKNADGKLTLQ 167
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 49.8 bits (119), Expect = 3e-07
Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA-----PGP 411
FD+ ++Q + + F G ++K + + + G
Sbjct: 22 FDKKELQQWYKGFFKDCP--SGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGY 79
Query: 412 INFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVM 471
I+F F+ +G D + AF +D DN+G+I+ + + ++ ++ +
Sbjct: 80 IDFKEFICALSVTSRGE-LNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKL 138
Query: 472 NEKLNHCLELVD 483
E + + V+
Sbjct: 139 PEDEDTPEKRVN 150
Score = 37.5 bits (87), Expect = 0.004
Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 21/87 (24%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFGDRL 425
AF + D + +G I +++ ++ ++ + M ++
Sbjct: 102 IWAFQLYDLDNNGLISYDEMLRIVDAI---------------------YKMVGSMVKLPE 140
Query: 426 QGTDPEDVIKNAFGCFDEDNSGIINEE 452
PE + F D++ G + E
Sbjct: 141 DEDTPEKRVNKIFNMMDKNKDGQLTLE 167
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 47.6 bits (114), Expect = 4e-07
Identities = 22/141 (15%), Positives = 37/141 (26%), Gaps = 48/141 (34%)
Query: 401 LEGMMGE--APGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELL 458
+ + PG ++ F L G + + +K F D+D SG I EE L+ +L
Sbjct: 11 INKAISAFKDPGTFDYKRFFHLVGLK---GKTDAQVKEVFEILDKDQSGFIEEEELKGVL 67
Query: 459 TSM---GDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYRE 515
G D E +
Sbjct: 68 KGFSAHGRDLNDT---------------------------------------ETKALLAA 88
Query: 516 API-KNGMFDYIEFTRILKHG 535
+G EF +++
Sbjct: 89 GDSDHDGKIGADEFAKMVAQA 109
Score = 47.2 bits (113), Expect = 5e-07
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 363 QNFKEAFNMIDQNRDGFIDKEDLHDMLASL---GKNPTDDYLEGMMGEA----PGPINFT 415
KE F ++D+++ GFI++E+L +L G++ D + ++ G I
Sbjct: 41 AQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGAD 100
Query: 416 MFLTL 420
F +
Sbjct: 101 EFAKM 105
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 49.5 bits (118), Expect = 8e-07
Identities = 21/132 (15%), Positives = 50/132 (37%), Gaps = 8/132 (6%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA-----PGP 411
F + ++Q F G +++E ++ + + A G
Sbjct: 61 FTKKELQILYRGFKNECP--SGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGA 118
Query: 412 INFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVM 471
++F F+ L+GT ++ + AF +D + G I +E + +++ ++ D
Sbjct: 119 VSFEDFIKGLSILLRGT-VQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYP 177
Query: 472 NEKLNHCLELVD 483
K + + V+
Sbjct: 178 VLKEDAPRQHVE 189
Score = 38.7 bits (90), Expect = 0.003
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 21/90 (23%)
Query: 363 QNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFG 422
+ AFN+ D N+DG+I KE++ D++ ++ + M
Sbjct: 138 EKLNWAFNLYDINKDGYITKEEMLDIMKAI---------------------YDMMGKCTY 176
Query: 423 DRLQGTDPEDVIKNAFGCFDEDNSGIINEE 452
L+ P ++ F D++ G++ +
Sbjct: 177 PVLKEDAPRQHVETFFQKMDKNKDGVVTID 206
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 48.8 bits (116), Expect = 8e-07
Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%)
Query: 327 DSKMSSRKTAGRRATTKKRAQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLH 386
S M + K+ + Q T F + ++ ++ ++F + G I ++
Sbjct: 5 SSGMGNSKSGALSKEILEELQLNTK-----FSEEELCSWYQSF--LKDCPTGRITQQQFQ 57
Query: 387 DMLASLGKNPTDDYLEGMMGEA-----PGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCF 441
+ A + + + G ++F ++ G ++ AF +
Sbjct: 58 SIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGK-TNQKLEWAFSLY 116
Query: 442 DEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCL--ELVD 483
D D +G I++ + E++ ++ T EDV + + +
Sbjct: 117 DVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAE 160
Score = 34.6 bits (79), Expect = 0.055
Identities = 12/85 (14%), Positives = 35/85 (41%), Gaps = 19/85 (22%)
Query: 368 AFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFGDRLQG 427
AF++ D + +G I K ++ +++ ++ K T + ++ + +
Sbjct: 112 AFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDD-------------------E 152
Query: 428 TDPEDVIKNAFGCFDEDNSGIINEE 452
PE + + F +++ + E+
Sbjct: 153 NTPEKRAEKIWKYFGKNDDDKLTEK 177
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 50.4 bits (121), Expect = 9e-07
Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 6/130 (4%)
Query: 344 KRAQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEG 403
K A F + + K +I+ +G D E M + L
Sbjct: 300 KGAILTVMLATRNFSVRKQEIIKVTEQLIEAISNG--DFESYTKMCDPGMTAFEPEALGN 357
Query: 404 MMGEAPGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGD 463
++ ++F F I N D S I R+ + L + G
Sbjct: 358 LVEG----LDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGI 413
Query: 464 RFTDEDVMNE 473
T +
Sbjct: 414 PRTAQSEETR 423
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 46.4 bits (111), Expect = 1e-06
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 364 NFKEAFNMIDQNRDGFIDKEDLHDMLASL---GKNPTDDYLEGMMGEA----PGPINFTM 416
+ K+AF +IDQ++ GFI++++L L + + TD + + + G I
Sbjct: 42 DVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDE 101
Query: 417 FLTL 420
F +
Sbjct: 102 FAAM 105
Score = 46.4 bits (111), Expect = 1e-06
Identities = 23/142 (16%), Positives = 37/142 (26%), Gaps = 42/142 (29%)
Query: 395 NPTDDYLEGMMGEA--PGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEE 452
D + + F G + D +K AF D+D SG I E+
Sbjct: 5 GLKDADVAAALAACSAADSFKHKEFFAKVGLA---SKSLDDVKKAFYVIDQDKSGFIEED 61
Query: 453 RLRELLTSMGDRFTDEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEM 512
L+ L + + L+D E
Sbjct: 62 ELKLFLQNFSPS---------------------ARALTDA---------------ETKAF 85
Query: 513 YREAPI-KNGMFDYIEFTRILK 533
+ +GM EF ++K
Sbjct: 86 LADGDKDGDGMIGVDEFAAMIK 107
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 45.7 bits (109), Expect = 2e-06
Identities = 24/128 (18%), Positives = 36/128 (28%), Gaps = 40/128 (31%)
Query: 407 EAPGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFT 466
+A N+ F + G + D IK FG D+D SG I EE L+ L +
Sbjct: 20 QAADSFNYKSFFSTVGLS---SKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFS---- 72
Query: 467 DEDVMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLIMIEVDEMYREAPI-KNGMFDY 525
+ L+ E +G
Sbjct: 73 -----------------SSARVLTSA---------------ETKAFLAAGDTDGDGKIGV 100
Query: 526 IEFTRILK 533
EF ++K
Sbjct: 101 EEFQSLVK 108
Score = 45.7 bits (109), Expect = 2e-06
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNP---TDDYLEGMMGEAP--- 409
K+ F ++DQ++ GFI++E+L L + + T + +
Sbjct: 35 GLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDG 94
Query: 410 -GPINFTMFLTL 420
G I F +L
Sbjct: 95 DGKIGVEEFQSL 106
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 47.0 bits (111), Expect = 5e-06
Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDD-YLEGMM----GEAPGP 411
F + ++Q+ F G +D++ + + Y + + G
Sbjct: 88 FTKKELQSLYRGFKNECPT--GLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGA 145
Query: 412 INFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVM 471
I+F F+ L+GT + +K AF +D + G I +E + ++ S+ D
Sbjct: 146 IHFEDFVVGLSILLRGT-VHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYP 204
Query: 472 NEKLNHCLELVD 483
+ + LE V+
Sbjct: 205 ILREDAPLEHVE 216
Score = 37.7 bits (87), Expect = 0.006
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 21/87 (24%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFGDRL 425
K AFN+ D N+DG I KE++ ++ S+ + M L
Sbjct: 168 KWAFNLYDINKDGCITKEEMLAIMKSI---------------------YDMMGRHTYPIL 206
Query: 426 QGTDPEDVIKNAFGCFDEDNSGIINEE 452
+ P + ++ F D + G++ +
Sbjct: 207 REDAPLEHVERFFQKMDRNQDGVVTID 233
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 46.1 bits (109), Expect = 8e-06
Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMM-----GEAPGP 411
F + ++Q F G +++E + A + + G
Sbjct: 48 FTKRELQVLYRGFKNECP--SGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGS 105
Query: 412 INFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVM 471
+ F F+T L+GT + ++ F +D + G IN+E + +++ ++ D
Sbjct: 106 VKFEDFVTALSILLRGT-VHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYP 164
Query: 472 NEKLNHCLELVD 483
K + + VD
Sbjct: 165 VLKEDTPRQHVD 176
Score = 38.0 bits (88), Expect = 0.004
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 21/87 (24%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFGDRL 425
+ FN+ D N+DG+I+KE++ D++ ++ + M L
Sbjct: 128 RWTFNLYDINKDGYINKEEMMDIVKAI---------------------YDMMGKYTYPVL 166
Query: 426 QGTDPEDVIKNAFGCFDEDNSGIINEE 452
+ P + F D++ GI+ +
Sbjct: 167 KEDTPRQHVDVFFQKMDKNKDGIVTLD 193
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 42.5 bits (101), Expect = 8e-06
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFTMFLTLF 421
+ F ID N DG + E++ ++ + L+ + G I+ F +
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 422 G 422
G
Sbjct: 63 G 63
Score = 32.5 bits (75), Expect = 0.036
Identities = 4/38 (10%), Positives = 16/38 (42%)
Query: 433 VIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDV 470
+ + F D + G ++ E ++ ++ ++ +
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLL 38
Score = 31.4 bits (72), Expect = 0.093
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 366 KEAFNMIDQNRDGFIDKEDLHDMLASL 392
+ F ID + +G ID+ + S+
Sbjct: 39 QLIFKSIDADGNGEIDQNEFAKFYGSI 65
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 45.2 bits (107), Expect = 1e-05
Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 357 FDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMM-----GEAPGP 411
F + ++Q F ++ G +++E + A + + G
Sbjct: 15 FTKRELQVLYRGFK--NEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGS 72
Query: 412 INFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVM 471
+ F F+T L+GT + ++ F +D + G IN+E + +++ ++ D
Sbjct: 73 VKFEDFVTALSILLRGT-VHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYP 131
Query: 472 NEKLNHCLELVD 483
K + + VD
Sbjct: 132 VLKEDTPRQHVD 143
Score = 36.7 bits (85), Expect = 0.008
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 21/90 (23%)
Query: 363 QNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLFG 422
+ + FN+ D N+DG+I+KE++ D++ ++ + M
Sbjct: 92 EKLRWTFNLYDINKDGYINKEEMMDIVKAI---------------------YDMMGKYTY 130
Query: 423 DRLQGTDPEDVIKNAFGCFDEDNSGIINEE 452
L+ P + F D++ GI+ +
Sbjct: 131 PVLKEDTPRQHVDVFFQKMDKNKDGIVTLD 160
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 2e-05
Identities = 57/323 (17%), Positives = 100/323 (30%), Gaps = 131/323 (40%)
Query: 10 AQEYDIDNLKKGIVGKDLYELIE-----FD--DN--MQNGENSIQVIAKYQVGKEPR--F 58
+QE +G+ G DLY+ + ++ DN SI I V P
Sbjct: 1626 SQE-------QGM-GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDI----VINNPVNLT 1673
Query: 59 IYFF-QEGSLVAWNVSDLEIENLLE----FLKQF-EIKPYEKAVVLN-EKELMNYTYS-- 109
I+F ++G + N S + E +++ K F EI + + EK L++ T
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 110 PNIKVSQLKRDSICLVE------NSPDDM------LSKYT----ISNAMALS--VKL--- 148
P + + E P D L +Y +++ M++ V++
Sbjct: 1734 PALTLM-----EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 149 -------------------------------GIWEAALDKYVDSIEYIT----EV---NG 170
+ AL V+ + T E+ N
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 171 ENSIQVIAKYQVGKEPRFIYFFQEGSLVAWNVSDLEIENLLEFLKQFEIKPYEKAVVLNE 230
EN V A G L A ++ + L +++ + L +
Sbjct: 1849 ENQQYVAA----------------GDLRA-------LDTVTNVLNFIKLQKI-DIIELQK 1884
Query: 231 KELMNYTYSPNIREVLQKTGQLF 253
S ++ EV G LF
Sbjct: 1885 --------SLSLEEV---EGHLF 1896
Score = 45.4 bits (107), Expect = 5e-05
Identities = 56/420 (13%), Positives = 111/420 (26%), Gaps = 171/420 (40%)
Query: 195 GSL-VAWNVSDLEIENLL--------EFLKQFEIKPYEKAVVLNEK----EL----MNYT 237
GSL V +F K +P E +E EL + Y
Sbjct: 14 GSLEHVLLVP----TASFFIASQLQEQFNKILP-EPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 238 YSPNIREVLQKTGQLFA--LRHSINLDSDLLDTPDFYWERDDLENLYLQTCN------YF 289
V F L + +F EN YL+ +
Sbjct: 69 ----SSLVEPSKVGQFDQVLNLCLT---------EF-------ENCYLEGNDIHALAAKL 108
Query: 290 SISRRTKMISRIYICRRVTTSASRDEQSVCYSILTIIDSKMSSRKTAGRRATTK--KRAQ 347
T ++ + + Y I +++ +++ +++ + +
Sbjct: 109 LQENDTTLVKTKELIK-------------NY-----ITARIMAKRPFDKKSNSALFRAVG 150
Query: 348 RATSNVFAMFD-QAQIQN-FKE--------------------------AFNMIDQNR--- 376
+ + A+F Q + F+E +D +
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 377 DGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTM-FLTLFGD-----RLQGTDP 430
G ++ + L + P DYL PI+ + + +L G P
Sbjct: 211 QGL----NILEWLENPSNTPDKDYL------LSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 431 EDV---IKNAFGCFDEDNSGII----------------NEERLRELLTSMGDRFTD---- 467
++ +K A G + G++ + + +L +G R +
Sbjct: 261 GELRSYLKGATGH----SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 468 --------ED--------------VMNEKLNHCLELVDLLSSHLSDKHHIRLEWMIIVLI 505
ED + N + V+ +SHL + I L+
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE-----ISLV 371
Score = 43.9 bits (103), Expect = 1e-04
Identities = 48/271 (17%), Positives = 81/271 (29%), Gaps = 104/271 (38%)
Query: 110 PNIKVS-QLKRDSICLVENSPDDMLSKYTISNAMALSVKLGIWEAALDKYVDSIE----- 163
PN + + DS+ E P M LS+ + + + YV+
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPM-----------LSIS-NLTQEQVQDYVNKTNSHLPA 362
Query: 164 ----YITEVNGENSIQVIAKYQVGKEPRFIYFFQEGSLVAWNVSDLEIENLLEFLKQFEI 219
I+ VNG ++ V++ G P+ SL N++ L L Q I
Sbjct: 363 GKQVEISLVNGAKNL-VVS----G-PPQ--------SLYGLNLT-LRKAKAPSGLDQSRI 407
Query: 220 KPYEKAVVLNEKELMNYTY----SPNIREVLQKTGQLFALRHS---------INLDSDLL 266
P+ + K + + SP F HS IN D L
Sbjct: 408 -PFSE-----RKLKFSNRFLPVASP------------F---HSHLLVPASDLINKD---L 443
Query: 267 DTPDFYWERDDL----------ENLYLQTCNYFSISRRTKMISRIYICRRVTTSASRDEQ 316
+ + D+ + L+ + SIS R I + + E
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSD--LRVLSG-SISER--------IVDCIIRLPVKWET 492
Query: 317 SVCYSILTIID---------SKMSSRKTAGR 338
+ + I+D ++ R G
Sbjct: 493 TTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Score = 42.0 bits (98), Expect = 5e-04
Identities = 52/348 (14%), Positives = 102/348 (29%), Gaps = 111/348 (31%)
Query: 231 KELMN-Y-TYSPNIREVLQKTGQLFALRHSINLDSDLLDTPDFY--------WERDDLEN 280
+EL + Y TY + ++++ + + + L LD + W LEN
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLS-----ELIRTTLDAEKVFTQGLNILEW----LEN 221
Query: 281 -------LYL-------------QTCNYFSISRRT-----KMISRIY---ICRR-----V 307
YL Q +Y ++ ++ S + + V
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 308 TTSASRDEQS------VCYSILTIIDSKMSSRKTAGRRATTKKRAQRATSNVFA----MF 357
+ + +S ++L I + + + + + N M
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVR--CYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 358 -----DQAQIQNFKEAFNM-IDQNRDGFI------DK-------EDLHDMLASLGKNPTD 398
Q Q+Q++ N + + I + L+ + +L K
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 399 DYLEGMMGEAPG---PINFTM-FLTLF----GDRLQGTDP---EDVIKNAFGCFDEDNSG 447
L+ P + F+ FL + L +D++KN F+ +
Sbjct: 400 SGLD--QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV-SFNAKDIQ 456
Query: 448 I-----INEERLRELLTSMGDRFTD---------EDVMNEKLNHCLEL 481
I + LR L S+ +R D E K H L+
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 29.2 bits (65), Expect = 4.8
Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 59/131 (45%)
Query: 5 VAFSTAQEYDIDNLKKGIVGKDLYELIE---FDDNMQNGENSIQVIAKYQVGKEPRFIYF 61
VA S +QE + + + + GK L+E + N EN V A
Sbjct: 1817 VAASFSQE-ALQYVVERV-GKRTGWLVEIVNY-----NVENQQYVAA------------- 1856
Query: 62 FQEGSLVAWNVSDLEIENLLEFLKQFEIKPYEKAVVLNEKELMNYTYSPNIKVSQLKRDS 121
G L A ++ + L +++ I + +L+
Sbjct: 1857 ---GDLRA-------LDTVTNVLNFIKLQ--------------------KIDIIELQ--- 1883
Query: 122 ICLVENSPDDM 132
S +++
Sbjct: 1884 ---KSLSLEEV 1891
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 36.4 bits (85), Expect = 0.002
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 363 QNFKEAFNMIDQNRD--GFIDKEDLHDMLASLGKNPTDDY--LEGMMGEA----PGPINF 414
+ K AF + I KE+L ++ +LG + L+ M+ E G ++F
Sbjct: 5 EEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSF 64
Query: 415 TMFLTL 420
FL +
Sbjct: 65 EEFLVM 70
Score = 33.4 bits (77), Expect = 0.023
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 431 EDVIKNAFGCFD--EDNSGIINEERLRELLTSMGDRFTDED 469
+ IK AF F E + I++E L+ ++ ++G
Sbjct: 4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGM 44
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 39.5 bits (91), Expect = 0.003
Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 16/148 (10%)
Query: 355 AMFDQAQIQN-FKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----P 409
+M + ++Q+ D+N+D ++ ++L D L L D Y + E
Sbjct: 2 SMDQRQKLQHWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQT 61
Query: 410 GPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDED 469
+ T + ++ E I AF + E + L +
Sbjct: 62 DSLEDEEIETFY--KMLTQRAE--IDRAFEEAAGSAETLSVERLVTFLQHQQREEEAGPA 117
Query: 470 VMNEKLNHCLELVDLLSSHLSDKHHIRL 497
L L++ + K ++
Sbjct: 118 -------LALSLIERYEPSETAKAQRQM 138
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 39.1 bits (90), Expect = 0.004
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Query: 358 DQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPIN 413
Q Q+ F+ +FN D+ + G +D ED L S+G N + +M G +
Sbjct: 720 SQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVT 779
Query: 414 FTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLT 459
F F+ TD D + +F D I + LR L
Sbjct: 780 FQAFIDFMSRETADTDTADQVMASFKILAGDK-NYITVDELRRELP 824
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 38.2 bits (88), Expect = 0.007
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 20/112 (17%)
Query: 363 QNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEG-----------MMG-EAPG 410
+ F++ F + D + +L ++L + D +G +M + G
Sbjct: 731 RQFRKLFVQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTG 789
Query: 411 PINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMG 462
+ F F L+ + ++ + + F+ D SG I L + G
Sbjct: 790 KLGFEEFKYLW-NNIKK------WQGIYKRFETDRSGTIGSNELPGAFEAAG 834
Score = 37.1 bits (85), Expect = 0.014
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 362 IQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGM---MGEAPGPINFTMFL 418
I+ ++ + + +R G I +L + G + + + G ++F F+
Sbjct: 803 IKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYSDETGNMDFDNFI 862
Query: 419 TLFGDRLQGTDPEDVIKNAFGCFDEDNSGIIN 450
+ RL + AF D++ +G I
Sbjct: 863 SCLV-RLD------AMFRAFRSLDKNGTGQIQ 887
Score = 35.5 bits (81), Expect = 0.047
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 362 IQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMM---GEAPGPINFTMFL 418
I+N+ F D ++ G + ++ + + G + ++ + I+F F+
Sbjct: 606 IRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFADDELIIDFDNFV 665
Query: 419 TLFGDRLQGTDPEDVIKNAFGCFDEDNSGIIN 450
RL+ ++ F D +N+G I
Sbjct: 666 RCLV-RLE------ILFKIFKQLDPENTGTIQ 690
Score = 32.1 bits (72), Expect = 0.51
Identities = 28/198 (14%), Positives = 65/198 (32%), Gaps = 25/198 (12%)
Query: 289 FSISRRTKMISRIYICRR-VTTSASRDEQSVCYSILTI---IDSKMSSRKTAGRRATTKK 344
F ++ ++ S +I R V+ T + R + ++A T++
Sbjct: 453 FFLANASRAQSEHFINLREVSNRIRLPPGEYIVVPSTFEPNKEGDFLLRFFSEKKAGTQE 512
Query: 345 RAQRATSNVFAMFDQAQIQNFKEAFNMIDQ--NRDGFIDKEDLHDMLASLGKNPTDDY-- 400
+ +N+ ++ + + + D I ++L +L + D
Sbjct: 513 LDDQIQANLPDEKVLSEEEIDDNFKTLFSKLAGDDMEISVKELQTILNRIISKHKDLRTN 572
Query: 401 ----------LEGMMGEAPGPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIIN 450
+ M + G + F L+ R++ F FD D SG ++
Sbjct: 573 GFSLESCRSMVNLMDRDGNGKLGLVEFNILWN-RIRN------YLTIFRKFDLDKSGSMS 625
Query: 451 EERLRELLTSMGDRFTDE 468
+R + + G + +
Sbjct: 626 AYEMRMAIEAAGFKLPCQ 643
Score = 28.2 bits (62), Expect = 7.7
Identities = 16/132 (12%), Positives = 38/132 (28%), Gaps = 11/132 (8%)
Query: 361 QIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTL 420
+++ + F +D G I L + A + +
Sbjct: 670 RLEILFKIFKQLDPENTGTI----------QLDLISWLSFSVLGKLAAAIEHHHHHHMHY 719
Query: 421 FGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLE 480
++ E + F + ++ L +L + R D ++ C
Sbjct: 720 SNIEANESEEERQFRKLFVQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRS 778
Query: 481 LVDLLSSHLSDK 492
+V ++ S + K
Sbjct: 779 MVAVMDSDTTGK 790
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 37.5 bits (86), Expect = 0.013
Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 360 AQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMM---GEAPGPINFTM 416
+IQ +++ + ID +R G ++ ++ L G + ++ + I+F
Sbjct: 602 TKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFDN 661
Query: 417 FLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIIN 450
F+ RL+ ++ F D +N+G I
Sbjct: 662 FVRCLV-RLE------ILFKIFKQLDPENTGTIQ 688
Score = 32.5 bits (73), Expect = 0.37
Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 19/125 (15%)
Query: 356 MFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDML--------ASLGKNPTDDYLEGMMGE 407
++ I + D I +L +L + + + M+
Sbjct: 524 EANEEDIGDGFRRLFAQLAGEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDM 583
Query: 408 AP----GPINFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGD 463
G + F L+ ++Q + + D D SG +N +R+ L G
Sbjct: 584 LDEDGSGKLGLKEFYILW-TKIQK------YQKIYREIDVDRSGTMNSYEMRKALEEAGF 636
Query: 464 RFTDE 468
+ +
Sbjct: 637 KLPCQ 641
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-
acetylglucosaminyltransferase; methylmercury derivative,
N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus
cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A*
2am3_A* 2am4_A* 2am5_A*
Length = 343
Score = 36.6 bits (84), Expect = 0.015
Identities = 16/122 (13%), Positives = 39/122 (31%), Gaps = 1/122 (0%)
Query: 171 ENSIQVIAKYQVGKEPRFIYFFQEGSLVAWNVSDLEIENLLEFLKQFEIKPYEKAVVLNE 230
+ + Y+ E I Q+ + + ++Q ++ +
Sbjct: 17 RRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRK 76
Query: 231 KELMNYTYSPNIREVLQKTGQLFALRHSINLDSDLLDTPDFYWERDDLENLYLQTCNYFS 290
+ Y + + R L + F ++ ++ DL PDF+ L + +
Sbjct: 77 FQG-YYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWC 135
Query: 291 IS 292
+S
Sbjct: 136 VS 137
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.039
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 22/51 (43%)
Query: 100 EKELMNYTYSPNIKVSQLKRDSICLVENSPDDMLSKYTISNAMALSVKLGI 150
EK+ LK+ ++ S L Y +A AL++K +
Sbjct: 18 EKQ-------------ALKK-----LQAS----LKLYADDSAPALAIKATM 46
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 32.8 bits (75), Expect = 0.048
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 359 QAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLG 393
A+ + E F D++ DGF+ ++ ++ G
Sbjct: 6 PAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG 40
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Length = 86
Score = 32.1 bits (72), Expect = 0.073
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 369 FNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGP 411
F++ D+N + D DML LG+ T E +M EA GP
Sbjct: 20 FDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGP 62
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 32.4 bits (74), Expect = 0.090
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 359 QAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLG 393
Q+ +++ FN D+ G + +L
Sbjct: 10 QSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSS 44
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 32.0 bits (73), Expect = 0.096
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 359 QAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLG 393
Q Q + F I + +GFI +
Sbjct: 5 DEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK 39
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 30.9 bits (70), Expect = 0.28
Identities = 4/35 (11%), Positives = 10/35 (28%)
Query: 359 QAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLG 393
+ Q + + F + + FI +
Sbjct: 18 EEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSK 52
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein;
HET: OGA; 2.57A {Homo sapiens}
Length = 442
Score = 32.5 bits (73), Expect = 0.33
Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 11/80 (13%)
Query: 404 MMGEAPGPINFTMFLTLFGDRLQGTDPED-----------VIKNAFGCFDEDNSGIINEE 452
M P +NF +LF + E +I+ +
Sbjct: 2 MAAGGPSALNFDSPSSLFESLISPIKTETFFKEFWEQKPLLIQRDDPALATYYGSLFKLT 61
Query: 453 RLRELLTSMGDRFTDEDVMN 472
L+ L + D +V
Sbjct: 62 DLKSLCSRGMYYGRDVNVCR 81
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 30.1 bits (68), Expect = 0.78
Identities = 10/53 (18%), Positives = 21/53 (39%)
Query: 168 VNGENSIQVIAKYQVGKEPRFIYFFQEGSLVAWNVSDLEIENLLEFLKQFEIK 220
+ E +I + KY P ++ +EG+ + + N+ L +K
Sbjct: 66 LEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVK 118
Score = 27.4 bits (61), Expect = 5.2
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 35 DNMQNGENSIQVIAKYQVGKEPRFIYFFQEGSLVAWNVSDLEIENLLEFLKQFEIK 90
+ +N + + KY P ++ +EG+ + + N+ L +K
Sbjct: 67 EEEKNID----LAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVK 118
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 30.7 bits (69), Expect = 0.85
Identities = 12/113 (10%), Positives = 32/113 (28%), Gaps = 19/113 (16%)
Query: 363 QNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNP------TDDYLEGMMG----EAPGPI 412
+ + + R ID L +L + D ++ + G +
Sbjct: 5 HHHHHHSSGLV-PRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRL 63
Query: 413 NFTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRF 465
+ F L+ + ++ F + G++ L + + +
Sbjct: 64 DQEEFARLWKRLVH-------YQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLR 108
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine,
transfera; HET: KCX; 1.90A {Propionibacterium
freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5
PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Length = 539
Score = 31.1 bits (71), Expect = 1.2
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 15/77 (19%)
Query: 399 DYLEGMMGEAPGPIN---FTMFLTLFGDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLR 455
D + G G +P + + G + P D++ + E++ +
Sbjct: 388 DIMLGYYGASPADRDPKVVKLAEEQSGKKPITQRPADLLPPEW------------EKQSK 435
Query: 456 ELLTSMGDRFTDEDVMN 472
E T G TDEDV+
Sbjct: 436 EAATLKGFNGTDEDVLT 452
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron
transport; HET: HEC; NMR {Pseudomonas putida}
Length = 110
Score = 28.9 bits (64), Expect = 1.6
Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 20 KGIVGKDLYELIEFDDNMQNGENSIQVIAKYQVGKEPRFIYFFQEGSLV---AWNVSDLE 76
+ +G DL + + ++V + K+P + F++ + + + D E
Sbjct: 27 QPGIGPDLLG-VTRQRDANWLVRWLKVPDQMLAEKDPLAMLLFEQYNRLAMPNMRLGDAE 85
Query: 77 IENLLEFLKQFEIKP 91
+ L+ +L++ +
Sbjct: 86 VSALISYLEEETARL 100
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 29.2 bits (65), Expect = 1.6
Identities = 8/55 (14%), Positives = 22/55 (40%)
Query: 429 DPEDVIKNAFGCFDEDNSGIINEERLRELLTSMGDRFTDEDVMNEKLNHCLELVD 483
P+++ + F D D + +++ L +T + E + + ++D
Sbjct: 65 SPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIID 119
Score = 27.6 bits (61), Expect = 6.1
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 368 AFNMIDQNRDGFIDKEDLHDMLASL--------GKNPTDDYLEGM 404
F M D + + +D +L + + ++D L +
Sbjct: 73 YFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINI 117
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose,
nucleotidyltransferase, pyrophosphorylase, allostery;
HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6
PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A*
1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B*
1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A*
...
Length = 293
Score = 30.1 bits (69), Expect = 1.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 376 RDGFIDKEDLHDMLASLGKNPTDDYLEGMMGE 407
R +ID L + A L KN YL+ ++ E
Sbjct: 259 RQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTE 290
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate
thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia
coli} SCOP: c.68.1.6
Length = 296
Score = 30.2 bits (69), Expect = 1.8
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 376 RDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAP 409
R+G++D E + +SL K YL ++ P
Sbjct: 260 RNGWLDDEGVKRAASSLAKTGYGQYLLELLRARP 293
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 29.7 bits (68), Expect = 2.3
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 71 NVSDLEIENLLEFLKQFEIKP-----YEKAVV 97
N+S + ++NL++F+ +E P Y A V
Sbjct: 312 NISKVRVKNLVDFIHHWEFTPNGTEGYRTAEV 343
Score = 29.7 bits (68), Expect = 2.3
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 201 NVSDLEIENLLEFLKQFEIKP-----YEKAVV 227
N+S + ++NL++F+ +E P Y A V
Sbjct: 312 NISKVRVKNLVDFIHHWEFTPNGTEGYRTAEV 343
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase
structure, B enzymes, Zn2+ binding site, TIM-barrel
fold, lyase; 1.70A {Vibrio cholerae}
Length = 464
Score = 29.8 bits (68), Expect = 2.4
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 399 DYLEGMMGEAPGPINFTMFLTLFGDRLQGTD-PEDVIKNAFGCFDEDNSGIINEERLREL 457
L+G G+ P P+N + + T P D+I + E+ +
Sbjct: 371 GVLKGEYGKTPAPVNTELQARVLAGAEAITCRPADLIAAEMPTLQDRVLQQAKEQHIT-- 428
Query: 458 LTSMGDRFTDEDVMN 472
+DV+
Sbjct: 429 ----LAENAIDDVLT 439
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 29.3 bits (65), Expect = 2.4
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 353 VFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDML--------ASLGKNPTDDYLEGM 404
+ DQ + F+M+D+N DG + E++ +++ S K D+Y +
Sbjct: 88 YEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALI 147
Query: 405 MGEA 408
M E
Sbjct: 148 MEEL 151
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 29.8 bits (68), Expect = 2.6
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 71 NVSDLEIENLLEFLKQFEIKP-----YEKAVV 97
++SD I+ L ++ + +KP Y A V
Sbjct: 331 DLSDKTIDALASSIQVWAVKPAGSEGYRTAEV 362
Score = 29.8 bits (68), Expect = 2.6
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 201 NVSDLEIENLLEFLKQFEIKP-----YEKAVV 227
++SD I+ L ++ + +KP Y A V
Sbjct: 331 DLSDKTIDALASSIQVWAVKPAGSEGYRTAEV 362
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide
complex, nucleotide binding fold; HET: TYD; 1.70A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.68.1.6
Length = 295
Score = 29.4 bits (67), Expect = 2.7
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 376 RDGFIDKEDLHDMLASLGKNPTDDYLEGMMGE 407
+G+I +ED+ +M L K YL +
Sbjct: 260 NNGWITREDVLEMAEKLEKTDYGKYLRDLAEG 291
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 28.2 bits (63), Expect = 3.3
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 36 NMQNGENSIQVIAKYQVGKEPRFIYFFQEGSLVAWNVSDLEIENLLEFLKQF 87
+M+ GE +++ KY V P ++ G +V V + LL+ +K
Sbjct: 69 DMEKGEG-VELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119
Score = 27.8 bits (62), Expect = 5.2
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 152 EAALDKYVDSIEYITEVNGEN--SIQVIAKYQVGKEPRFIYFFQEGSLVAWNVSDLEIEN 209
++ + Y + +++ E +++ KY V P ++ G +V V +
Sbjct: 52 DSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPE 111
Query: 210 LLEFLKQF 217
LL+ +K
Sbjct: 112 LLKKVKLG 119
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 28.5 bits (64), Expect = 3.4
Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 123 CLVENSPD--DMLSKYTISNAMALSVKLGIWEAALDKYV--DSIEYITEV---NGENSIQ 175
N + ++K+ S+ + E+ + V D ++ T+ G+ S +
Sbjct: 47 SRARN-VQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKES-E 104
Query: 176 VIAKYQVGKEPRFIYFFQEGSLVAWNVSDLEIENLLE 212
+ KY + K + EG ++A NV+ ++ +L+
Sbjct: 105 LYKKYDLRKGFKNFLINDEGVIIAANVTPEKLTEILK 141
Score = 27.7 bits (62), Expect = 5.4
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 3 NVVAFSTAQEYDIDNLKKGIVGKDLYELIEFDDNMQNGENSIQVIAKYQVGKEPRFIYFF 62
+ S + + + + L +F + G+ S ++ KY + K +
Sbjct: 65 KIAMCSISMDEKESIFTETVKIDKLDLSTQFHEG--LGKES-ELYKKYDLRKGFKNFLIN 121
Query: 63 QEGSLVAWNVSDLEIENLLE 82
EG ++A NV+ ++ +L+
Sbjct: 122 DEGVIIAANVTPEKLTEILK 141
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA
replication, allosteric enzyme, nucleotide-binding,
cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A
{Homo sapiens}
Length = 676
Score = 29.4 bits (66), Expect = 4.1
Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 2/113 (1%)
Query: 281 LYLQTCNYFSISRRTKMISRIYICRRVTTSASRDEQSVCYSILTIIDSKMSSRKTAGRRA 340
LY +CN S + I +C + S+DE +VC ++ ++ + + +
Sbjct: 333 LYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVC-NLASLALNMYVTSEHTYDFK 391
Query: 341 TTKKRAQRATSNVFAMFDQAQIQNFKEAFNMIDQNRDGFIDKEDLHDMLASLG 393
+ + N+ + D EA ++R I + L D +
Sbjct: 392 KLAEVTKVVVRNLNKIIDINYY-PVPEACLSNKRHRPIGIGVQGLADAFILMR 443
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 28.5 bits (63), Expect = 4.6
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 9/100 (9%)
Query: 362 IQNFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEAPGPINFTMFLTLF 421
I ++ ++Q + ++ DM + N D G I F T
Sbjct: 106 INCLTTIYDRLEQEHNNLVNVPLCVDMCLNWLLNVYD-------TGRTGRIRVLSFKTGI 158
Query: 422 GDRLQGTDPEDVIKNAFGCFDEDNSGIINEERLRELLTSM 461
+ ED + F ++G ++ RL LL
Sbjct: 159 ISLCKAH-LEDKYRYLFKQVA-SSTGFCDQRRLGLLLHDS 196
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 27.2 bits (60), Expect = 4.9
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 353 VFAMFDQAQIQNF--KEAFNMIDQNRDGFIDKEDLHDML 389
V+ D F K F + D N DG +D+++L +
Sbjct: 8 VWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALF 46
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module,
carbohydrate metabolism, cell WALL
biogenesis/degradation; 1.94A {Clostridium thermocellum
atcc 27405} PDB: 3p0d_C 2b59_B
Length = 321
Score = 28.9 bits (63), Expect = 5.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 373 DQNRDGFIDKEDLHDMLASLGKNPTD 398
D NR+G I+ +D+ + G +D
Sbjct: 284 DINRNGAINMQDIMIVHKHFGATSSD 309
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 28.7 bits (65), Expect = 5.3
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 57 RFIYFFQE-----GSLVAWNVSDLEIENLLEFLKQFEIKP-----YEKAVV 97
R+ F E GS A VS +I L++ K+F + EKA V
Sbjct: 334 RYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEFTVNVNGTQSIEKAFV 384
Score = 28.7 bits (65), Expect = 5.3
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 187 RFIYFFQE-----GSLVAWNVSDLEIENLLEFLKQFEIKP-----YEKAVV 227
R+ F E GS A VS +I L++ K+F + EKA V
Sbjct: 334 RYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEFTVNVNGTQSIEKAFV 384
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 27.1 bits (60), Expect = 5.5
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 9/73 (12%)
Query: 365 FKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDDYLEGMMGEA----PGPINFTMF--- 417
+++ + ++ G + D L G L + A G ++ F
Sbjct: 13 YEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLI--LGKIWDLADTDGKGVLSKQEFFVA 70
Query: 418 LTLFGDRLQGTDP 430
L L G +
Sbjct: 71 LRLVACAQNGLEV 83
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 6.0
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 8/38 (21%)
Query: 346 AQRATSNVFAMFDQAQIQNFKEA---FNMIDQNRDGFI 380
+ATSN F + E R+GF+
Sbjct: 1146 NMKATSNTLEEF--EHGRTPAEMSRPA---TTTRNGFM 1178
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 27.7 bits (61), Expect = 6.7
Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 5/48 (10%)
Query: 362 IQNFKEAFNMIDQNRDGFIDKEDLHDMLASLG-----KNPTDDYLEGM 404
F E + D FI+ L D +L P L M
Sbjct: 19 FDMFYEIWEKFDPEATQFIEYSVLSDFADALSEPLRIAKPNQISLINM 66
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 28.0 bits (62), Expect = 7.2
Identities = 22/159 (13%), Positives = 46/159 (28%), Gaps = 13/159 (8%)
Query: 59 IYFFQEGSLVAWNVSDLEIENLLEFLKQFEIKPYEKAVVLNEKELMNYTYSPNIKVSQLK 118
+ FF + ++ L++ I E P ++ + L+
Sbjct: 93 VRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPA------CPPLEPAXLE 146
Query: 119 RDSICLVENSPDDMLSKYTISNAMALSVKLGIWEAALDKYVDSIEYITEVNGENSIQVIA 178
N+ + + + + E ALD + V + V+
Sbjct: 147 EIDGFFARNNEEYLALIFEXGGSYLA------REVALDLSQHKGVAVRRVLNTEA-NVVR 199
Query: 179 KYQVGKEPRFIYFFQEGSLVAWNVSDLEIENLLEFLKQF 217
K+ V P F+ GS+ V +L++
Sbjct: 200 KFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRL 238
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 28.4 bits (62), Expect = 7.2
Identities = 34/310 (10%), Positives = 90/310 (29%), Gaps = 16/310 (5%)
Query: 5 VAFSTAQEYDIDNLKKGIVGKDLYELIEFDD-NMQNGENSIQVIA------KYQVGKEPR 57
+ T Q + K I ++ L+ FD+ + + ++ +I K P
Sbjct: 114 IIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPL 173
Query: 58 FIYFFQEGSLVAWNVSDLE--IENLLEFLKQFEIKPYEKAVVLNEKELMNYTYSPNIKVS 115
S+ + + ++ + + + V N +EL Y P
Sbjct: 174 PQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIAT-VKHNLEELEQVVYKPQKFFR 232
Query: 116 QLKRDSICLVENSPDDMLSKYTISNAMALSVKLGIWEAALDKYVDSIEYITEVNGENSIQ 175
+++ + ++ + T S A + L ++ + +Y +
Sbjct: 233 KVESRISDKFKYIIAQLM-RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKAC 291
Query: 176 VIAKYQVGKEPRFIYFFQEGSLVAWNVSDLEIENLLEFLKQFEIKPYEKAVVLNEKELMN 235
++ + E I +L + + + L + +K + +
Sbjct: 292 MVFQMPDKDEESRIC----KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRA 347
Query: 236 YTYSPNIREVLQKTGQLFALRHSINLDSDLLDTPDFYWERDDLENLYLQTCNYFSISRRT 295
+ +++ Q+ + S++ D + P L+ Y +I
Sbjct: 348 AGFDEIEQDLTQRFEEKLQELESVSRDPSNEN-PKLEDLCFILQEEYHLNPETITILFVK 406
Query: 296 KMISRIYICR 305
+
Sbjct: 407 TRALVDALKN 416
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2;
TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A
{Homo sapiens}
Length = 161
Score = 27.5 bits (61), Expect = 7.3
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 465 FT-DEDVMNEKLNHCLELV-DLLSSHLSDKHHIRLE 498
FT + V+ L C +++ +L+ HL+ K H R+
Sbjct: 86 FTFEAAVLAGLLTECRDVLLELVEHHLTPKSHGRIR 121
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote
binding; 1.90A {Streptomyces noursei}
Length = 247
Score = 27.8 bits (61), Expect = 7.4
Identities = 18/126 (14%), Positives = 43/126 (34%), Gaps = 10/126 (7%)
Query: 202 VSDLEIENLLEFLKQFEIKPYEKAVVLNEKELMNYTYSPNIREVLQKTGQLFALRHSINL 261
D I+ +L + E++V K+L +R L+ G R +
Sbjct: 66 YVDTHIDEMLIADG-RSAQEAERSVKRTLKDLRR-----RLRRSLESVGDHAE-RFRVRS 118
Query: 262 DSDLLDTPDFYWERDDLENLYLQTCNYFSISRRTKMISRIYICRRVTTSASRDEQSVCYS 321
S+L +TP++ R+ + + + + + R + R + +
Sbjct: 119 LSELQETPEYRAVRERTDRAFEEDAEFATACEDM---VRAVVMNRPGDGVGISAEHLRAG 175
Query: 322 ILTIID 327
+ ++
Sbjct: 176 LNYVLA 181
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 28.3 bits (63), Expect = 7.7
Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 12/84 (14%)
Query: 184 KEPRFIYFFQEGSLVAWNVSDLEIENLLEFLKQFEIKPYEKAVVLNEKELMNYTYSPNIR 243
+++ + ++V +N+ + +L + NY SP+ +
Sbjct: 25 SGQEYLHQSADNNIVLYNIETGQSYTILS------------NRTMKSVNASNYGLSPDRQ 72
Query: 244 EVLQKTGQLFALRHSINLDSDLLD 267
V ++ R+S + D
Sbjct: 73 FVYLESDYSKLWRYSYTATYYIYD 96
>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative;
1.60A {Streptomyces coelicolor} PDB: 2oqh_A
Length = 398
Score = 28.0 bits (63), Expect = 8.2
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 397 TDDYLEGMMGEAPGPINFTMFLTLFGDRLQGTDPEDV 433
TD +EG GE + L GT P +
Sbjct: 61 TDSGVEGW-GETMWGAPVAAIVRRMAPDLIGTSPFAL 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.391
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,427,718
Number of extensions: 525413
Number of successful extensions: 2127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1809
Number of HSP's successfully gapped: 380
Length of query: 542
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 444
Effective length of database: 3,965,535
Effective search space: 1760697540
Effective search space used: 1760697540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)