BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15786
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 181/240 (75%), Positives = 206/240 (85%), Gaps = 2/240 (0%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+C
Sbjct: 34 GQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTC 93
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
LV+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDA+KTC + VKFYQ
Sbjct: 94 LVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQ 153
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESP
Sbjct: 154 ASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESP 213
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RRG NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 214 RRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFV 273
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 325 bits (833), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 155/240 (64%), Positives = 186/240 (77%), Gaps = 3/240 (1%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DGSYLAEFL+ KGYEVHGI RR+SSFNT R+ H+Y +P + LHYGD++D+S
Sbjct: 11 GQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHT-CNPKFHLHYGDLSDTSN 69
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L +I+ VQP EVYNL A SHV VSF+ EYTA+VDA+GTLRLL+AI+ + +FYQ
Sbjct: 70 LTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQ 129
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYG V E PQ ETTPFYPRSPYA AKLYAYWI VNYRE+Y M+ACNGILFNHESP
Sbjct: 130 ASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESP 189
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RRGE FVTRKITR++A I+ GL + LGN+DS RDWGHAKDYV++ ++ + DFV
Sbjct: 190 RRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFV 249
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 294 bits (753), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 139/228 (60%), Positives = 174/228 (76%), Gaps = 3/228 (1%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DGSYL EFL+ KGYEVHG+IRRSS+FNT RI H+Y +P + + MKLHY D+TD+S
Sbjct: 38 GQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASS 97
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK--TCKFHHQVKF 164
L + I ++P EVYNLAAQSHV VSF++ +YTA+V A G LRLL+A++ T VK+
Sbjct: 98 LRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKY 157
Query: 165 YQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHE 224
YQA +SE++G PQ+ETTPF+PRSPYA +K A+W VNYREAY +FACNGILFNHE
Sbjct: 158 YQAGSSEMFGST-PPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHE 216
Query: 225 SPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEV 272
SPRRGENFVTRKITR++ +I +GL + LGNL + RDWG A DYVE
Sbjct: 217 SPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEA 264
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 132/225 (58%), Positives = 168/225 (74%), Gaps = 8/225 (3%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DG+YLA+ L+ KGYEV+G RRS F + R++ L +E +K+ + D+ + S
Sbjct: 13 GQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKEL------GIENDVKIIHMDLLEFSN 66
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
+++ I VQP EVYNLAAQS V VSF+ TAEVDA+G LR+L+A++T K KFYQ
Sbjct: 67 IIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVK--PDTKFYQ 124
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSE++GKV E PQTE TPFYPRSPYA AKL+ +WI VNYREAYNMFAC+GILFNHESP
Sbjct: 125 ASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESP 184
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
RG FVTRKIT S+A+I GL + + LGNL++KRDWG+A +YVE
Sbjct: 185 LRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVE 229
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 153/226 (67%), Gaps = 8/226 (3%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DG+YLA+ L+ KGY VHG++ R SS R++ L +EG ++ GDM D+
Sbjct: 24 GQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL------GIEGDIQYEDGDMADACS 77
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
+ + + QP+EVYNLAAQS V S++ T VD +G LL+AI+ +F + +FYQ
Sbjct: 78 VQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIR--QFSPETRFYQ 135
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSE++G + Q E TPFYPRSPY AKLY +WI VNYRE++ + A +GILFNHESP
Sbjct: 136 ASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESP 195
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEV 272
RG FVTRK+T +VA+I LG + ++LGN+D+KRDWG A DYVE
Sbjct: 196 LRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEA 241
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 21/225 (9%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G YLA L + EV G R N ++ ++ ++ D+ DS + +
Sbjct: 25 GKYLANHLTEQNVEVFGTSRN----NEAKLPNV------------EMISLDIMDSQRVKK 68
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
+IS ++P +++LAA+S VK S+ + T + GTL +LDA++ + +
Sbjct: 69 VISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNL--DCRILTIGS 126
Query: 170 SELYGKVV--ETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
SE YG ++ E+P +E P SPY +K + Y +AY M + FNH P
Sbjct: 127 SEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPG 186
Query: 228 RGENFVTRKITRSVAKISLGLME-YVQLGNLDSKRDWGHAKDYVE 271
+ FVT+ + + I + E +++GNL++ RD+ +D V+
Sbjct: 187 QSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQ 231
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 16/223 (7%)
Query: 50 GSYLAEFLISK--GYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
GS +++ K +EV I + N ++ L +P GD+ D +
Sbjct: 16 GSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDP------RYTFVKGDVADYELV 69
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
+++ V V +LAA+SHV S E + +GT LL++I+ + + +V+F
Sbjct: 70 KELVRKVD--GVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIR--RENPEVRFVHV 125
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
ST E+YG +++ TE P SPY+ K + +V+ + YN+ A N+ P
Sbjct: 126 STDEVYGDILKGSFTENDRLMPSSPYSATKAASDMLVLGWTRTYNLNASITRCTNNYGPY 185
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYV 270
+ F + I +++ + SLGL + G + RDW + +D+V
Sbjct: 186 Q---FPEKLIPKTIIRASLGLKIPIY-GTGKNVRDWLYVEDHV 224
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 10/173 (5%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKF 158
G++ + L +I + + N AA+SHV S + + + +GT+ LL+ +K K+
Sbjct: 82 GEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVK--KY 139
Query: 159 HHQVKFYQASTSELYGKVVETPQ-TETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACN 217
H +K Q ST E+YG + +T + TE TP P SPY+ +K A I + Y + Y +
Sbjct: 140 PH-IKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKTYQLPVIV 198
Query: 218 GILFNHESP-RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDY 269
N+ P + E + +T ++ L L G+ + RDW H D+
Sbjct: 199 TRCSNNYGPYQYPEKLIPLXVTNALEGKKLPLY-----GDGLNVRDWLHVTDH 246
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 14/180 (7%)
Query: 100 DMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK----- 154
D+ D + L ++ + QP V +LAA+SHV S D E + VGT LL+A +
Sbjct: 59 DICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNA 118
Query: 155 -TCKFHHQVKFYQASTSELYGKVVETPQ--TETTPFYPRSPYACAKLYAYWIVVNYREAY 211
T +F+ ST E+YG + T TETTP+ P SPY+ +K + +V + Y
Sbjct: 119 LTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 212 NMFACNGILFNHESPRR-GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYV 270
+ N+ P E + I ++A SL + GN RDW + +D+
Sbjct: 179 GLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVY-----GNGQQIRDWLYVEDHA 233
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 111/249 (44%), Gaps = 40/249 (16%)
Query: 50 GSYLAEFLISKGYEV---HGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
GS LA F +S+G ++ + R+ ++ N + L G+ + +GD+ + +
Sbjct: 14 GSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL---------GNFEFVHGDIRNKND 64
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
+ ++I+ P ++LA Q + S D E++ GTL LL+A++ +++
Sbjct: 65 VTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVR--QYNSNCNIIY 122
Query: 167 ASTSELYGKV--------------VETPQ--TETTPFYPRSPYACAKLYAYWIVVNYREA 210
+ST+++YG + V+ P E+T SPY C+K A +++Y
Sbjct: 123 SSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR- 181
Query: 211 YNMFACNGILFNHESPRRGENFVTRK------ITRSVAKISLGLME-YVQLGNLDSKRDW 263
+F N ++F H S G F T + +I G+ + + GN RD
Sbjct: 182 --IFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDV 239
Query: 264 GHAKDYVEV 272
HA+D + +
Sbjct: 240 LHAEDMISL 248
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 22/193 (11%)
Query: 95 KLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK 154
+ D+ DS+ + +I QP V +LAA+SHV S E + VGT LL+ +
Sbjct: 53 NFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVAR 112
Query: 155 TC------KFHHQVKFYQASTSELYGKVVETPQ----------TETTPFYPRSPYACAKL 198
+ +F+ ST E+YG + + TETT + P SPY+ +K
Sbjct: 113 KYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKA 172
Query: 199 YAYWIVVNYREAYNMFACNGILFNHESPRR-GENFVTRKITRSVAKISLGLMEYVQLGNL 257
+ +V +R Y + N+ P E + I ++ L + G
Sbjct: 173 SSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY-----GKG 227
Query: 258 DSKRDWGHAKDYV 270
D RDW + +D+
Sbjct: 228 DQIRDWLYVEDHA 240
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 21/182 (11%)
Query: 94 MKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAI 153
++ +GD+ D+ L + + V + + AA+SHV S + E + GT LL
Sbjct: 57 LRFVHGDIRDAGLLARELRGVD--AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-- 112
Query: 154 KTCKFHHQV-KFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYN 212
C V + ST E+YG + TE++P P SPYA +K + + Y Y
Sbjct: 113 --CAVDAGVGRVVHVSTDEVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYG 170
Query: 213 M-----FACNGILFNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAK 267
+ CN N+ + E + +T + +L L G+ + R+W H
Sbjct: 171 LDVRITRCCN----NYGPYQHPEKLIPLFVTNLLDGGTLPLY-----GDGANVREWVHTD 221
Query: 268 DY 269
D+
Sbjct: 222 DH 223
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 94 MKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAI 153
++ +GD+ D+ L + + V + + AA+SHV S + E + GT LL
Sbjct: 57 LRFVHGDIRDAGLLARELRGVD--AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-- 112
Query: 154 KTCKFHHQV-KFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYN 212
C V + ST+++YG + TE++P P SPYA +K + + Y Y
Sbjct: 113 --CAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYG 170
Query: 213 M-----FACNGILFNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAK 267
+ CN N+ + E + +T + +L L G+ + R+W H
Sbjct: 171 LDVRITRCCN----NYGPYQHPEKLIPLFVTNLLDGGTLPLY-----GDGANVREWVHTD 221
Query: 268 DY 269
D+
Sbjct: 222 DH 223
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 24/189 (12%)
Query: 94 MKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAI 153
++L GD+ D+ + ++ + + + + AA+SH S + + +GT LL+A
Sbjct: 56 VELVVGDIADAELVDKL--AAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAA 113
Query: 154 KTCKFHHQVKFYQASTSELYGKVV---------ETPQ---TETTPFYPRSPYACAKLYAY 201
+ + ++F+ ST E+YG + E P T T + P SPY+ K +
Sbjct: 114 RK----YDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASD 169
Query: 202 WIVVNYREAYNMFACNGILFNHESP-RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSK 260
IV + ++ + A N+ P + E F+ R+IT +A I L G +
Sbjct: 170 LIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY-----GEGKNV 224
Query: 261 RDWGHAKDY 269
RDW H D+
Sbjct: 225 RDWIHTNDH 233
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G +L+ +L + G V G S + L+ + V M+ GD+ D + L++
Sbjct: 22 GGWLSLWLQTMGATVKGY-----SLTAPTVPSLFE--TARVADGMQSEIGDIRDQNKLLE 74
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK 154
I QP V+++AAQ V++S+ T + +GT+ LL+AI+
Sbjct: 75 SIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIR 119
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 92/234 (39%), Gaps = 47/234 (20%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGS--------MKLHYGDM 101
G +LA L++ G EV + L P EG+ ++L D+
Sbjct: 20 GGHLARALVASGEEVT------------VLDDLRVPPMIPPEGTGKFLEKPVLELEERDL 67
Query: 102 TDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMS-EYTAEVDAVGTLRLLDAIKTCKFHH 160
+D R VY+LA+ V SF +Y VD+ L L C
Sbjct: 68 SDV------------RLVYHLASHKSVPRSFKQPLDYLDNVDSGRHLLAL-----CTSVG 110
Query: 161 QVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGIL 220
K ST E+YG+ P E +P PRSPYA +K+ +V + ++ GI+
Sbjct: 111 VPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKV-GLEMVAGAHQRASVAPEVGIV 169
Query: 221 --FNHESP-RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
FN P R + V R + + L + G+ + +RD+ + D V+
Sbjct: 170 RFFNVYGPGERPDALVPRLCANLLTRNELPVE-----GDGEQRRDFTYITDVVD 218
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 27/230 (11%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS++ E L+++G EV + +L + +V + D+ D + +
Sbjct: 13 GSHIVEDLLARGLEV------------AVLDNLATGKRENVPKGVPFFRVDLRDKEGVER 60
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
+P V + AAQ+ VKVS + EV+ +G L LL+A C+ + K AST
Sbjct: 61 AFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEA---CRQYGVEKLVFAST 117
Query: 170 -SELYGKVVETPQTETT-PFYPRSPYACAK-LYAYWIVVNYREAYNMFACNGILFNHESP 226
+YG+V E + E T P P+SPYA +K + +++ V Y ++Y + + N P
Sbjct: 118 GGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSV-YGQSYGLKWVSLRYGNVYGP 176
Query: 227 RR---GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS 273
R+ GE V V K GL V L + D G +DYV V
Sbjct: 177 RQDPHGEAGVVAIFAERVLK---GLP--VTLYARKTPGDEGCVRDYVYVG 221
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 118 EVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQASTSELYGKVV 177
EV+++AA V++ + + + + T RLL+A++ + STS +YG+
Sbjct: 66 EVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS---RIVFTSTSTVYGEAK 122
Query: 178 ETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFA 215
P E P +P S Y +KL ++ +Y ++M A
Sbjct: 123 VIPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQA 160
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPA-SHVEGSMKLHYGDMTDSSCLV 108
GS++AE L+ +G +V GI +F TGR +HL +P + VEGS + D + +
Sbjct: 34 GSHIAELLLERGDKVVGI----DNFATGRREHLKDHPNLTFVEGS-------IADHALVN 82
Query: 109 QIISSVQPREVYNLAA 124
Q+I +QP V + AA
Sbjct: 83 QLIGDLQPDAVVHTAA 98
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 50 GSYLAEFLISKGYEVHGIIRRS----SSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSS 105
GS+L+ +L G V G + S F R+ L M+ H GD+ D
Sbjct: 22 GSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDL-----------MESHIGDIRDFE 70
Query: 106 CLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK 154
L I+ +P V+++AAQ V++S++ T + +GT+ LL+ +K
Sbjct: 71 KLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVK 119
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS+L + L+ GYEV + + ++GR + + NP S +LH D+ D S
Sbjct: 13 GSHLVDKLVELGYEVVVV----DNLSSGRRE--FVNP------SAELHVRDLKDYSWGAG 60
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLD-----AIKTCKFHHQVKF 164
I V V++ AA V++S + V T +L+ ++T F
Sbjct: 61 IKGDV----VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVF------ 110
Query: 165 YQASTSELYGKVVETPQTETTPFYPRSPYACAK 197
AS+S +YG P E P+ P S Y AK
Sbjct: 111 --ASSSTVYGDADVIPTPEEEPYKPISVYGAAK 141
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 33/153 (21%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS+L + L+ GYEV ++ +TG GS +LH D+ D S
Sbjct: 13 GSHLVDKLVELGYEV--VVVDIVQRDTG--------------GSAELHVRDLKDYSWGAG 56
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLD-----AIKTCKFHHQVKF 164
I V V++ AA V++S + V T +L+ ++T F
Sbjct: 57 IKGDV----VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVF------ 106
Query: 165 YQASTSELYGKVVETPQTETTPFYPRSPYACAK 197
AS+S +YG P E P+ P S Y AK
Sbjct: 107 --ASSSTVYGDADVIPTPEEEPYKPISVYGAAK 137
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 141 VDAVGTLRLLDAIKTCKFHHQVKFYQASTSELY--GKVVETPQTETTPFYPRSPYACAKL 198
V+ GT RLLDA +F AS+ E+Y + P TE P P SPY KL
Sbjct: 101 VNVEGTRRLLDAASAAGVR---RFVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKL 157
Query: 199 YAYWIV 204
+V
Sbjct: 158 LGEELV 163
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKF 158
GD+ D + Q++ V V + AA V S T + G L +L A K +
Sbjct: 86 GDIRDLTTCEQVMKGVD--HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 143
Query: 159 HHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAK 197
F A++S YG P+ E P SPYA K
Sbjct: 144 Q---SFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK 179
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKF 158
GD+ D + Q++ V V + AA V S T + G L +L A K +
Sbjct: 80 GDIRDLTTCEQVMKGVD--HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 137
Query: 159 HHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAK 197
F A++S YG P+ E P SPYA K
Sbjct: 138 Q---SFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK 173
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKF 158
GD+ D + Q++ V V + AA V S T + G L +L A K +
Sbjct: 99 GDIRDLTTCEQVMKGVD--HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 156
Query: 159 HHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAK 197
F A++S YG P+ E P SPYA K
Sbjct: 157 Q---SFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK 192
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKF 158
GD+ D + Q++ V V + AA V S T + G L +L A K +
Sbjct: 86 GDIRDLTTCEQVMKGVD--HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 143
Query: 159 HHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAK 197
F A++S YG P+ E P SPYA K
Sbjct: 144 Q---SFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK 179
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 24/139 (17%)
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGI-LFN--- 222
+S++ +YG +P ET P +PY KL A I+ + A + + FN
Sbjct: 127 SSSATVYGVPERSPIDETFPLSATNPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVG 186
Query: 223 -HESPRRGENFVTRKITRSVAKISLGLMEY---VQLGNLDSKRDWGHAKDYVEVSSFERI 278
HES GE+ A I LM Y V +G L+ R +G DY + +
Sbjct: 187 AHESGLIGED---------PAGIPNNLMPYVAQVAVGKLEKLRVFG--SDY---PTPDGT 232
Query: 279 EWRDFVHTYRLYRDIGHIS 297
RD++H L R GHI+
Sbjct: 233 GVRDYIHVVDLAR--GHIA 249
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 9/115 (7%)
Query: 118 EVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQASTSELYGKVV 177
++Y+LA+ + T + + +GTL +L K + ASTSE+YG
Sbjct: 72 QIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG----ARLLLASTSEVYGDPE 127
Query: 178 ETPQTE-----TTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
PQ+E P PR+ Y K A + Y + + +FN PR
Sbjct: 128 VHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 182
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 93 SMKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSF-DMSE--YTAEVDAVGTLRL 149
S++L+ GD+ D L + S +P V + Q S D S YT + +GTL +
Sbjct: 78 SIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNV 137
Query: 150 LDAIKTCKFHHQVKFYQASTSELYG-----------KVVETPQTETTPFYPR 190
L AIK +F + + T YG + +T+T P YP+
Sbjct: 138 LFAIK--EFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLP-YPK 186
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 93 SMKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSF-DMSE--YTAEVDAVGTLRL 149
S++L+ GD+ D L + S +P V + Q S D S YT + +GTL +
Sbjct: 68 SIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNV 127
Query: 150 LDAIKTCKFHHQVKFYQASTSELYG-----------KVVETPQTETTPFYPR 190
L AIK +F + + T YG + +T+T P YP+
Sbjct: 128 LFAIK--EFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLP-YPK 176
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 93 SMKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSF-DMSE--YTAEVDAVGTLRL 149
S++L+ GD+ D L + S +P V + Q S D S YT + +GTL +
Sbjct: 78 SIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNV 137
Query: 150 LDAIK 154
L AIK
Sbjct: 138 LFAIK 142
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 138 TAEVDAVGTLRLLDAIKTCKFHHQVKFYQASTSELYGKVVETPQTE-----TTPFYPRSP 192
T + + +GTL L K + ASTSE+YG PQ+E P PR+
Sbjct: 114 TLKTNTIGTLNXLGLAKRVG----ARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRAC 169
Query: 193 YACAKLYAYWIVVNYREAYNMFACNGILFNHESPRRGEN 231
Y K A Y + + +FN PR N
Sbjct: 170 YDEGKRVAETXCYAYXKQEGVEVRVARIFNTFGPRXHXN 208
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 142 DAVGTLRLLDAIKTCKFHHQVKFYQASTSELYGK-VVETPQTETTPF------YPRSPYA 194
+ VG LRLL A+ H K +S++ ++G + + T P P SPY
Sbjct: 120 NVVGILRLLQAML---LHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYG 176
Query: 195 CAKLYAYWIVVNYREAYNMFACNGILFN----HESPRRGENF 232
+KL A ++ + EAY + FN HE GE++
Sbjct: 177 ESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHY 218
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 145 GTLRLLDAIKTCKFHHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAK 197
G L +L A + K F A++S YG P+ E T P SPYA K
Sbjct: 132 GFLNMLIAARDAKVQ---SFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTK 181
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 142 DAVGTLRLLDAIKTCKFHHQVKFYQASTSELYGKVVETPQTETTP 186
D G L++L K C+ + + T E+YG + E P+ + P
Sbjct: 39 DGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEAP 83
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 142 DAVGTLRLLDAIKTCKFHHQVKFYQASTSELYGKVVETPQTETTP 186
D G L++L K C+ + + T E+YG + E P+ + P
Sbjct: 37 DGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEAP 81
>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
pdb|2VD5|B Chain B, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
Length = 412
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 158 FHHQVKFYQASTSELYGKVV 177
F+ Q FY ST+E YGK+V
Sbjct: 264 FYGQTPFYADSTAETYGKIV 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,283,160
Number of Sequences: 62578
Number of extensions: 367030
Number of successful extensions: 1016
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 41
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)