BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15786
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K0C9|GMDS_MOUSE GDP-mannose 4,6 dehydratase OS=Mus musculus GN=Gmds PE=2 SV=1
Length = 372
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 182/240 (75%), Positives = 206/240 (85%), Gaps = 2/240 (0%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+C
Sbjct: 33 GQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTC 92
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
LV+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDAIKTC + VKFYQ
Sbjct: 93 LVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAIKTCGLINSVKFYQ 152
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESP
Sbjct: 153 ASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESP 212
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RRG NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 213 RRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFV 272
>sp|Q9VMW9|GMDS_DROME GDP-mannose 4,6 dehydratase OS=Drosophila melanogaster GN=Gmd PE=1
SV=2
Length = 395
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 179/226 (79%), Positives = 200/226 (88%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DGSYLAEFL+ K YEVHGIIRR+S+FNT RI+HLY++P +H G MKLHYGDMTDSS
Sbjct: 56 GQDGSYLAEFLLKKDYEVHGIIRRASTFNTTRIEHLYADPKAHKGGRMKLHYGDMTDSSS 115
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
LV+II+ V+P E+YNLAAQSHVKVSFD+SEYTAEVDAVGTLR+LDAI+TC V+FYQ
Sbjct: 116 LVKIINMVKPTEIYNLAAQSHVKVSFDLSEYTAEVDAVGTLRILDAIRTCGMEKNVRFYQ 175
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYGKVVETPQ E TPFYPRSPYACAK+Y +WIV+NYREAYNM+ACNGILFNHESP
Sbjct: 176 ASTSELYGKVVETPQNEQTPFYPRSPYACAKMYGFWIVINYREAYNMYACNGILFNHESP 235
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEV 272
RRGENFVTRKITRSVAKI MEY +LGNLDSKRDWGHA DYVE
Sbjct: 236 RRGENFVTRKITRSVAKIYHKQMEYFELGNLDSKRDWGHASDYVEA 281
>sp|Q8K3X3|GMDS_CRIGR GDP-mannose 4,6 dehydratase OS=Cricetulus griseus GN=GMDS PE=2 SV=1
Length = 372
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 182/240 (75%), Positives = 206/240 (85%), Gaps = 2/240 (0%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+C
Sbjct: 33 GQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTC 92
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
LV+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDAIKTC + VKFYQ
Sbjct: 93 LVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAIKTCGLINSVKFYQ 152
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESP
Sbjct: 153 ASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESP 212
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RRG NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 213 RRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFV 272
>sp|O60547|GMDS_HUMAN GDP-mannose 4,6 dehydratase OS=Homo sapiens GN=GMDS PE=1 SV=1
Length = 372
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 181/240 (75%), Positives = 206/240 (85%), Gaps = 2/240 (0%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+C
Sbjct: 33 GQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTC 92
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
LV+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDA+KTC + VKFYQ
Sbjct: 93 LVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQ 152
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESP
Sbjct: 153 ASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESP 212
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RRG NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 213 RRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFV 272
>sp|Q18801|GMD1_CAEEL GDP-mannose 4,6 dehydratase 1 OS=Caenorhabditis elegans GN=bre-1
PE=1 SV=3
Length = 399
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 178/240 (74%), Positives = 202/240 (84%), Gaps = 7/240 (2%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASH-VEGSMKLHYGDMTDSS 105
+DGSYLAE L+SKGY+VHGIIRRSSSFNT RI+HLYSNP +H + S LHYGDMTDSS
Sbjct: 60 GQDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHYGDMTDSS 119
Query: 106 CLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFY 165
CL+++IS+++P EVY+LAAQSHVKVSFD+ EYTAEVDAVGTLRLLDAI C+ +V+FY
Sbjct: 120 CLIKLISTIEPTEVYHLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRLTEKVRFY 179
Query: 166 QASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHES 225
QASTSELYGKV E PQ+E TPFYPRSPYA AK+Y YWIVVNYREAYNMFACNGILFNHES
Sbjct: 180 QASTSELYGKVQEIPQSEKTPFYPRSPYAVAKMYGYWIVVNYREAYNMFACNGILFNHES 239
Query: 226 PRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVSSFERIEWRDFVH 285
PRRGE FVTRKITRSVAKISLG E ++LGNL + RDWGHA++YVE WR H
Sbjct: 240 PRRGETFVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVEAM------WRILQH 293
>sp|A8Y0L5|GMD1_CAEBR GDP-mannose 4,6 dehydratase 1 OS=Caenorhabditis briggsae GN=bre-1
PE=3 SV=2
Length = 377
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/240 (73%), Positives = 201/240 (83%), Gaps = 7/240 (2%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASH-VEGSMKLHYGDMTDSS 105
+DGSYLAE L+SKGY+VHGIIRRSSSFNT RI+HLYSNP +H + S LHYGDMTDSS
Sbjct: 38 GQDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYSNPMTHNGDSSFSLHYGDMTDSS 97
Query: 106 CLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFY 165
CL+++IS+++P EVY+LAAQSHVKVSFD+ EYTAEVDAVGTLRLLDAI C+ +V+FY
Sbjct: 98 CLIKLISTIEPTEVYHLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRLTEKVRFY 157
Query: 166 QASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHES 225
QASTSELYGKV E PQ+E TPFYPRSPYA AK+Y YWIVVNYREAY MFACNGILFNHES
Sbjct: 158 QASTSELYGKVQEIPQSEKTPFYPRSPYAVAKMYGYWIVVNYREAYKMFACNGILFNHES 217
Query: 226 PRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVSSFERIEWRDFVH 285
PRRGE FVTRKITRSVAKISLG E ++LGNL + RDWGHA++YVE WR H
Sbjct: 218 PRRGETFVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVEAM------WRILQH 271
>sp|O45583|GMD2_CAEEL GDP-mannose 4,6 dehydratase 2 OS=Caenorhabditis elegans GN=gmd-2
PE=1 SV=1
Length = 382
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 172/226 (76%), Positives = 196/226 (86%), Gaps = 1/226 (0%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASH-VEGSMKLHYGDMTDSS 105
+DGSYLAE L+SKGY+VHGIIRRSSSFNT RI+HLY NP +H S LHYGDMTDSS
Sbjct: 43 GQDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYGNPVTHNGSASFSLHYGDMTDSS 102
Query: 106 CLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFY 165
CL+++IS+++P E+Y+LAAQSHVKVSFD+ EYTAEVDAVGTLRLLDAI C+ +V+FY
Sbjct: 103 CLIKLISTIEPTEIYHLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRLTEKVRFY 162
Query: 166 QASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHES 225
QASTSELYGKV E PQ+E TPFYPRSPYA AK+Y YWIVVNYREAY MFACNGILFNHES
Sbjct: 163 QASTSELYGKVQEIPQSELTPFYPRSPYAVAKMYGYWIVVNYREAYKMFACNGILFNHES 222
Query: 226 PRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
PRRGE FVTRKITRSVAKISL E+++LGNL + RDWGHAK+YVE
Sbjct: 223 PRRGETFVTRKITRSVAKISLRQQEHIELGNLSALRDWGHAKEYVE 268
>sp|Q56872|GM4D_YERE8 Probable GDP-mannose 4,6-dehydratase OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=gmd PE=3 SV=2
Length = 372
Score = 336 bits (862), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 155/234 (66%), Positives = 187/234 (79%), Gaps = 7/234 (2%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DGSYLAEFL+ KGY+VHGI RRSSSFNT RI H+Y +P V LHYGD+TD+S
Sbjct: 11 GQDGSYLAEFLLEKGYQVHGIKRRSSSFNTSRIDHIYQDP-HEVNPHFFLHYGDLTDTSN 69
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L++++ +QP E+YNL AQSHV VSF+ EYTA+VDA+GTLRLL+A++ H+ +FYQ
Sbjct: 70 LIRLVKEIQPDEIYNLGAQSHVAVSFESPEYTADVDAMGTLRLLEAVRINGLEHKTRFYQ 129
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYG V E PQ ETTPFYPRSPYA AK+YAYWI VNYRE+Y M+ACNGILFNHESP
Sbjct: 130 ASTSELYGLVQEIPQRETTPFYPRSPYAVAKMYAYWITVNYRESYGMYACNGILFNHESP 189
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVSSFERIEW 280
RRGE FVTRKITR++A I+LGL + + LGN+DS RDWGHAKDYV R++W
Sbjct: 190 RRGETFVTRKITRAIANIALGLEDCLYLGNMDSLRDWGHAKDYV------RMQW 237
>sp|Q56598|GM4D2_VIBCL Probable GDP-mannose 4,6-dehydratase OS=Vibrio cholerae GN=rfbD
PE=3 SV=2
Length = 372
Score = 335 bits (858), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 159/235 (67%), Positives = 188/235 (80%), Gaps = 9/235 (3%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVE-GSMKLHYGDMTDSS 105
+DGSYLAEFL++KGYEVHGI RR+SSFNT R+ H+Y +P HV+ S LHYGD+TDSS
Sbjct: 12 GQDGSYLAEFLLAKGYEVHGIKRRASSFNTQRVDHIYQDP--HVDNASFILHYGDLTDSS 69
Query: 106 CLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFY 165
L +I+ V+P EVYNL AQSHV VSF+ EYTA+VDA+GTLRLL+AI+ KFY
Sbjct: 70 NLTRILQEVKPDEVYNLGAQSHVAVSFESPEYTADVDAMGTLRLLEAIRLLGLEKTTKFY 129
Query: 166 QASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHES 225
QASTSELYG V ETPQ ETTPFYPRSPYA AK+YAYWIVVNYRE+Y M+ACNGILFNHES
Sbjct: 130 QASTSELYGLVQETPQKETTPFYPRSPYAVAKMYAYWIVVNYRESYGMYACNGILFNHES 189
Query: 226 PRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVSSFERIEW 280
PRRGE FVTRKITR +A I+ GL + + +GN+D+ RDWGHAKDYV R++W
Sbjct: 190 PRRGETFVTRKITRGLANIAQGLEKCLYMGNMDALRDWGHAKDYV------RMQW 238
>sp|Q06952|GM4D1_VIBCH Probable GDP-mannose 4,6-dehydratase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=rfbD PE=3
SV=1
Length = 373
Score = 333 bits (854), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 161/241 (66%), Positives = 190/241 (78%), Gaps = 5/241 (2%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEG-SMKLHYGDMTDSS 105
+DGSYLAEFL+ KGYEVHGI RRSS FNT R+ HLY +P H E + KLHYGD+TDSS
Sbjct: 13 GQDGSYLAEFLLEKGYEVHGIKRRSSLFNTQRVDHLYKDP--HEEDVNFKLHYGDLTDSS 70
Query: 106 CLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFY 165
L +I++ VQP EVYNL AQSHV VSF EYTA+VDA+GTLRLL+AI+ + KFY
Sbjct: 71 NLTRILAEVQPDEVYNLGAQSHVAVSFQSPEYTADVDAIGTLRLLEAIRFLGLTKKTKFY 130
Query: 166 QASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHES 225
QASTSELYG V E PQ ETTPFYPRSPYA AK+YAYWI +NYRE+Y ++ACNGILFNHES
Sbjct: 131 QASTSELYGLVQEIPQKETTPFYPRSPYAVAKMYAYWITINYRESYGIYACNGILFNHES 190
Query: 226 PRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDF 283
PRRGE FVTRKITR +A I+ GL + + +GNLD+ RDWGHAKDYV++ ++ E RDF
Sbjct: 191 PRRGETFVTRKITRGMANIAQGLEKCLFMGNLDALRDWGHAKDYVKMQWMMLQQDEPRDF 250
Query: 284 V 284
V
Sbjct: 251 V 251
>sp|P0AC91|GM4D_SHIFL GDP-mannose 4,6-dehydratase OS=Shigella flexneri GN=gmd PE=3 SV=1
Length = 373
Score = 325 bits (833), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/240 (64%), Positives = 186/240 (77%), Gaps = 3/240 (1%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DGSYLAEFL+ KGYEVHGI RR+SSFNT R+ H+Y +P + LHYGD++D+S
Sbjct: 12 GQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHT-CNPKFHLHYGDLSDTSN 70
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L +I+ VQP EVYNL A SHV VSF+ EYTA+VDA+GTLRLL+AI+ + +FYQ
Sbjct: 71 LTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQ 130
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYG V E PQ ETTPFYPRSPYA AKLYAYWI VNYRE+Y M+ACNGILFNHESP
Sbjct: 131 ASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESP 190
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RRGE FVTRKITR++A I+ GL + LGN+DS RDWGHAKDYV++ ++ + DFV
Sbjct: 191 RRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFV 250
>sp|P0AC88|GM4D_ECOLI GDP-mannose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=gmd
PE=1 SV=1
Length = 373
Score = 325 bits (833), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/240 (64%), Positives = 186/240 (77%), Gaps = 3/240 (1%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DGSYLAEFL+ KGYEVHGI RR+SSFNT R+ H+Y +P + LHYGD++D+S
Sbjct: 12 GQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHT-CNPKFHLHYGDLSDTSN 70
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L +I+ VQP EVYNL A SHV VSF+ EYTA+VDA+GTLRLL+AI+ + +FYQ
Sbjct: 71 LTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQ 130
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYG V E PQ ETTPFYPRSPYA AKLYAYWI VNYRE+Y M+ACNGILFNHESP
Sbjct: 131 ASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESP 190
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RRGE FVTRKITR++A I+ GL + LGN+DS RDWGHAKDYV++ ++ + DFV
Sbjct: 191 RRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFV 250
>sp|P0AC89|GM4D_ECOL6 GDP-mannose 4,6-dehydratase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=gmd PE=3 SV=1
Length = 373
Score = 325 bits (833), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/240 (64%), Positives = 186/240 (77%), Gaps = 3/240 (1%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DGSYLAEFL+ KGYEVHGI RR+SSFNT R+ H+Y +P + LHYGD++D+S
Sbjct: 12 GQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHT-CNPKFHLHYGDLSDTSN 70
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L +I+ VQP EVYNL A SHV VSF+ EYTA+VDA+GTLRLL+AI+ + +FYQ
Sbjct: 71 LTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQ 130
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYG V E PQ ETTPFYPRSPYA AKLYAYWI VNYRE+Y M+ACNGILFNHESP
Sbjct: 131 ASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESP 190
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RRGE FVTRKITR++A I+ GL + LGN+DS RDWGHAKDYV++ ++ + DFV
Sbjct: 191 RRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFV 250
>sp|P0AC90|GM4D_ECO57 GDP-mannose 4,6-dehydratase OS=Escherichia coli O157:H7 GN=gmd PE=3
SV=1
Length = 373
Score = 325 bits (833), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/240 (64%), Positives = 186/240 (77%), Gaps = 3/240 (1%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DGSYLAEFL+ KGYEVHGI RR+SSFNT R+ H+Y +P + LHYGD++D+S
Sbjct: 12 GQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHT-CNPKFHLHYGDLSDTSN 70
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L +I+ VQP EVYNL A SHV VSF+ EYTA+VDA+GTLRLL+AI+ + +FYQ
Sbjct: 71 LTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQ 130
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYG V E PQ ETTPFYPRSPYA AKLYAYWI VNYRE+Y M+ACNGILFNHESP
Sbjct: 131 ASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESP 190
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RRGE FVTRKITR++A I+ GL + LGN+DS RDWGHAKDYV++ ++ + DFV
Sbjct: 191 RRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFV 250
>sp|O85713|NOEL_RHIFH GDP-mannose 4,6-dehydratase OS=Rhizobium fredii (strain HH103)
GN=noeL PE=3 SV=1
Length = 351
Score = 314 bits (804), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 149/224 (66%), Positives = 174/224 (77%), Gaps = 1/224 (0%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DG+YLAE L+ +GY VHGI RRSSSFNT RI+H+Y E LHYGDMTDS+
Sbjct: 14 GQDGAYLAELLLDEGYIVHGIKRRSSSFNTQRIEHIYQE-RHDPEARFFLHYGDMTDSTN 72
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L++I+ QP E+YNLAAQSHV+VSF+ EYTA DA+GTLR+L+AI+ H+ +FYQ
Sbjct: 73 LLRIVQQTQPHEIYNLAAQSHVQVSFETPEYTANADAIGTLRMLEAIRILGLIHRTRFYQ 132
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYG E PQ E TPFYPRSPYA AKLYAYWIVVNYREAY M A NGILFNHESP
Sbjct: 133 ASTSELYGLAQEIPQNEKTPFYPRSPYAAAKLYAYWIVVNYREAYGMHASNGILFNHESP 192
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYV 270
RGE FVTRKITR+ A ISLG E + LGNLD++RDWGHA++YV
Sbjct: 193 LRGETFVTRKITRAAAAISLGKQEVLYLGNLDAQRDWGHAREYV 236
>sp|Q1ZXF7|GMDS_DICDI GDP-mannose 4,6 dehydratase OS=Dictyostelium discoideum GN=gmd PE=1
SV=1
Length = 356
Score = 314 bits (804), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 154/227 (67%), Positives = 181/227 (79%), Gaps = 3/227 (1%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRS-SSFNTGRIQHLYSNPASHVEG-SMKLHYGDMTDS 104
+DGSYL EFLISKGY VHGII++ FNT ++++Y E S+ LHYGD+TD+
Sbjct: 15 GQDGSYLTEFLISKGYYVHGIIQKIFHHFNT-IVKNIYIKIDMLKEKESLTLHYGDLTDA 73
Query: 105 SCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKF 164
S L I+S V P E+YNL AQSHVKVSFDMSEYT +VD +G LRLLDAI++C +VK+
Sbjct: 74 SNLHSIVSKVNPTEIYNLGAQSHVKVSFDMSEYTGDVDGLGCLRLLDAIRSCGMEKKVKY 133
Query: 165 YQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHE 224
YQASTSELYGKV E PQ+ETTPFYPRSPYA AK YAYWIVVNYREAY+M+ACNGILFNHE
Sbjct: 134 YQASTSELYGKVQEIPQSETTPFYPRSPYAVAKQYAYWIVVNYREAYDMYACNGILFNHE 193
Query: 225 SPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
SPRRG FVTRKITR VA I+ G E + LGN+++KRDWGHA+DYVE
Sbjct: 194 SPRRGPTFVTRKITRFVAGIACGRDEILYLGNINAKRDWGHARDYVE 240
>sp|P55354|NOEL_RHISN GDP-mannose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234)
GN=noeL PE=3 SV=1
Length = 351
Score = 313 bits (801), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 148/224 (66%), Positives = 175/224 (78%), Gaps = 1/224 (0%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DG+YLAE L+ +GY VHGI RRSSSFNT RI+H+Y E LHYGDMTDS+
Sbjct: 14 GQDGAYLAELLLDEGYIVHGIKRRSSSFNTQRIEHIYQE-RHDPEARFFLHYGDMTDSTN 72
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L++I+ QP E+YNLAAQSHV+VSF+ EYTA DA+GTLR+L+AI+ ++ +FYQ
Sbjct: 73 LLRIVQQTQPHEIYNLAAQSHVQVSFETPEYTANADAIGTLRMLEAIRILGLTNRTRFYQ 132
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYG E+PQ E TPFYPRSPYA AKLYAYWIVVNYREAY M A NGILFNHESP
Sbjct: 133 ASTSELYGLAQESPQNEKTPFYPRSPYAAAKLYAYWIVVNYREAYGMHASNGILFNHESP 192
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYV 270
RGE FVTRKITR+ A ISLG E + LGNLD++RDWGHA++YV
Sbjct: 193 LRGETFVTRKITRAAAAISLGKQEVLYLGNLDAQRDWGHAREYV 236
>sp|P93031|GMD2_ARATH GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thaliana GN=MUR1 PE=1
SV=3
Length = 373
Score = 294 bits (753), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 139/228 (60%), Positives = 174/228 (76%), Gaps = 3/228 (1%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DGSYL EFL+ KGYEVHG+IRRSS+FNT RI H+Y +P + + MKLHY D+TD+S
Sbjct: 38 GQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASS 97
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK--TCKFHHQVKF 164
L + I ++P EVYNLAAQSHV VSF++ +YTA+V A G LRLL+A++ T VK+
Sbjct: 98 LRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKY 157
Query: 165 YQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHE 224
YQA +SE++G PQ+ETTPF+PRSPYA +K A+W VNYREAY +FACNGILFNHE
Sbjct: 158 YQAGSSEMFGST-PPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHE 216
Query: 225 SPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEV 272
SPRRGENFVTRKITR++ +I +GL + LGNL + RDWG A DYVE
Sbjct: 217 SPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEA 264
>sp|Q9SNY3|GMD1_ARATH GDP-mannose 4,6 dehydratase 1 OS=Arabidopsis thaliana GN=GMD1 PE=2
SV=1
Length = 361
Score = 290 bits (741), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 133/228 (58%), Positives = 176/228 (77%), Gaps = 3/228 (1%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DGSYL EFL+ KGYEVHG+IRRSS+FNT R+ H+Y +P + + MKLHYGD++D+S
Sbjct: 26 GQDGSYLTEFLLEKGYEVHGLIRRSSNFNTQRLNHIYVDPHNVNKALMKLHYGDLSDASS 85
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHH--QVKF 164
L + + ++P EVYNLAAQSHV VSF++ +YTA+V A G LRLL+A+++ + +K+
Sbjct: 86 LRRWLDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHNIDNGRAIKY 145
Query: 165 YQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHE 224
YQA +SE++G PQ+ETTPF+PRSPYA +K A+W VNYREAY ++ACNGILFNHE
Sbjct: 146 YQAGSSEMFGST-PPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLYACNGILFNHE 204
Query: 225 SPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEV 272
SPRRGENFVTRKITR++ +I +GL + LGN+ + RDWG A DYVE
Sbjct: 205 SPRRGENFVTRKITRALGRIKVGLQTKLFLGNIQASRDWGFAGDYVEA 252
>sp|Q51366|GM4D_PSEAE GDP-mannose 4,6-dehydratase OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=gca PE=1
SV=2
Length = 323
Score = 234 bits (598), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 153/226 (67%), Gaps = 8/226 (3%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
+DG+YLA+ L+ KGY VHG++ R SS R++ L +EG ++ GDM D+
Sbjct: 12 GQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL------GIEGDIQYEDGDMADACS 65
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
+ + + QP+EVYNLAAQS V S++ T VD +G LL+AI+ +F + +FYQ
Sbjct: 66 VQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIR--QFSPETRFYQ 123
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSE++G + Q E TPFYPRSPY AKLY +WI VNYRE++ + A +GILFNHESP
Sbjct: 124 ASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESP 183
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEV 272
RG FVTRK+T +VA+I LG + ++LGN+D+KRDWG A DYVE
Sbjct: 184 LRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEA 229
>sp|Q6T1X6|RMD_ANETH GDP-6-deoxy-D-mannose reductase OS=Aneurinibacillus
thermoaerophilus GN=rmd PE=1 SV=1
Length = 309
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 21/225 (9%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G YLA L + EV G R N ++ ++ ++ D+ DS + +
Sbjct: 13 GKYLANHLTEQNVEVFGTSRN----NEAKLPNV------------EMISLDIMDSQRVKK 56
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
+IS ++P +++LAA+S VK S+ + T + GTL +LDA++ + +
Sbjct: 57 VISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNL--DCRILTIGS 114
Query: 170 SELYGKVV--ETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
SE YG ++ E+P +E P SPY +K + Y +AY M + FNH P
Sbjct: 115 SEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPG 174
Query: 228 RGENFVTRKITRSVAKISLGLME-YVQLGNLDSKRDWGHAKDYVE 271
+ FVT+ + + I + E +++GNL++ RD+ +D V+
Sbjct: 175 QSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQ 219
>sp|O06329|RMLB_MYCTU dTDP-glucose 4,6-dehydratase OS=Mycobacterium tuberculosis GN=rmlB
PE=1 SV=1
Length = 331
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 15/186 (8%)
Query: 88 SHVEGSMKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTL 147
+ VE +++L GD+TD+ + Q+++ + V + AA+SHV + D E + +GT
Sbjct: 45 ADVEDAIRLVQGDITDAELVSQLVA--ESDAVVHFAAESHVDNALDNPEPFLHTNVIGTF 102
Query: 148 RLLDAIKTCKFHHQVKFYQASTSELYGKVVETPQ---TETTPFYPRSPYACAKLYAYWIV 204
+L+A++ H V+ + ST E+YG + + TE+TP+ P SPY+ K A +V
Sbjct: 103 TILEAVR----RHGVRLHHISTDEVYGDLELDDRARFTESTPYNPSSPYSATKAGADMLV 158
Query: 205 VNYREAYNMFACNGILFNHESP-RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDW 263
+ +Y + A N+ P + E F+ R+IT + L Y N+ RDW
Sbjct: 159 RAWVRSYGVRATISNCSNNYGPYQHVEKFIPRQITNVLTGRRPKL--YGAGANV---RDW 213
Query: 264 GHAKDY 269
H D+
Sbjct: 214 IHVDDH 219
>sp|Q9HTB6|RMD_PSEAE GDP-6-deoxy-D-mannose reductase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rmd
PE=1 SV=1
Length = 304
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 116 PREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQASTSELYGK 175
P V +LA Q++V +F T +++ +GTL LL A+K F F S+ ++YG+
Sbjct: 54 PDAVIHLAGQTYVPEAFRDPARTLQINLLGTLNLLQALKARGFSG--TFLYISSGDVYGQ 111
Query: 176 VVET--PQTETTPFYPRSPYACAKLYAYWIVVNY--REAYNMFACNGILFNHESPRRGEN 231
V E P E +PR+PYA +KL A + + + E + + FNH P + ++
Sbjct: 112 VAEAALPIHEELIPHPRNPYAVSKLAAESLCLQWGITEGWRVLVARP--FNHIGPGQKDS 169
Query: 232 FVTRKITRSVAKISLGLM-EYVQLGNLDSKRDWGHAKDYV 270
FV R +A++ GL +++G++D RD+ +D +
Sbjct: 170 FVIASAARQIARMKQGLQANRLEVGDIDVSRDFLDVQDVL 209
>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2
Length = 313
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHY--GDMTDSSCL 107
GS L + L++ G+ V G+ ++GR ++L+S E S K + D+ D+ L
Sbjct: 13 GSTLVDRLLADGHGVVGL----DDLSSGRAENLHS-----AENSDKFEFVKADIVDAD-L 62
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
+++ +P +++LAAQ VK S D + A V+ VGT+RL +A + V + +
Sbjct: 63 TGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAGVRKVV--HTS 120
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNM 213
S +YG P +E P P SPYA K+ + YR Y++
Sbjct: 121 SGGSVYGTPPAYPTSEDMPVNPASPYAAGKVAGEVYLNMYRNLYDL 166
>sp|P0C7J0|RMLB_XANCP dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rfbB PE=3 SV=1
Length = 351
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 18/230 (7%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G+++ E +S+G V + + + N + L N A H+ GD+ D + + +
Sbjct: 15 GNFVLE-AVSRGIRVVNLDALTYAGNLNTLASLEGN-ADHI-----FVKGDIGDGALVTR 67
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK------TCKFHHQVK 163
++ QP V N AA+SHV S + + + VGTL LL+A++ +
Sbjct: 68 LLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFR 127
Query: 164 FYQASTSELYGKVVETPQ-TETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFN 222
F ST E+YG + ET + TETTP+ P SPY+ +K + +V + Y + N
Sbjct: 128 FLHVSTDEVYGTLGETGKFTETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSN 187
Query: 223 HESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEV 272
+ P +F + I +AK G V G+ RDW D+ E
Sbjct: 188 NYGPY---HFPEKLIPLVIAKALAGEPLPV-YGDGKQVRDWLFVSDHCEA 233
>sp|B0RVL0|RMLB_XANCB dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain B100) GN=rfbB PE=3 SV=1
Length = 351
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 18/230 (7%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G+++ E +S+G V + + + N + L N A H+ GD+ D + + +
Sbjct: 15 GNFVLE-AVSRGIRVVNLDALTYAGNLNTLASLEGN-ADHI-----FVKGDIGDGALVTR 67
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK------TCKFHHQVK 163
++ QP V N AA+SHV S + + + VGTL LL+A++ +
Sbjct: 68 LLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFR 127
Query: 164 FYQASTSELYGKVVETPQ-TETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFN 222
F ST E+YG + ET + TETTP+ P SPY+ +K + +V + Y + N
Sbjct: 128 FLHVSTDEVYGTLGETGKFTETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSN 187
Query: 223 HESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEV 272
+ P +F + I +AK G V G+ RDW D+ E
Sbjct: 188 NYGPY---HFPEKLIPLVIAKALAGEPLPV-YGDGKQVRDWLFVSDHCEA 233
>sp|A0QSK6|RMLB_MYCS2 dTDP-glucose 4,6-dehydratase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=rmlB PE=1 SV=1
Length = 331
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 15/184 (8%)
Query: 90 VEGSMKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRL 149
V ++L GD+TD++ + +++ + V + AA++HV + E + VGT +
Sbjct: 47 VADRIRLVQGDITDAALVGDLVA--ESDAVVHFAAETHVDNALADPEPFLHSNVVGTYTI 104
Query: 150 LDAIKTCKFHHQVKFYQASTSELYGKV-VETPQ--TETTPFYPRSPYACAKLYAYWIVVN 206
L+A++ H V+ + ST E+YG + ++ P ETTP+ P SPY+ K A +V
Sbjct: 105 LEAVR----RHNVRLHHVSTDEVYGDLELDNPARFNETTPYNPSSPYSSTKAAADLLVRA 160
Query: 207 YREAYNMFACNGILFNHESP-RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGH 265
+ +Y + A N+ P + E F+ R+IT + L Y N+ RDW H
Sbjct: 161 WVRSYGVRATISNCSNNYGPYQHVEKFIPRQITNVLTGRRPKL--YGAGANV---RDWIH 215
Query: 266 AKDY 269
D+
Sbjct: 216 VDDH 219
>sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3
SV=1
Length = 314
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGR---IQHLYSNPASHVEGSMKLHYGDMTDSSC 106
GS L + L++ G+ V G+ +F TGR ++HL N ++HV + D
Sbjct: 13 GSTLVDRLLADGHSVVGL----DNFATGRATNLEHLADN-SAHVFVEADIVTAD------ 61
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L I+ +P V++LAAQ V+ S ++ A V+ +GT+RL +A + V +
Sbjct: 62 LHAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQTGVRKIV--HT 119
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
+S +YG E P ET P P SPYA K+ + +R Y + + N P
Sbjct: 120 SSGGSIYGTPPEYPTPETAPTDPASPYAAGKVAGEIYLNTFRHLYGLDCSHIAPANVYGP 179
Query: 227 RR 228
R+
Sbjct: 180 RQ 181
>sp|P27830|RMLB2_ECOLI dTDP-glucose 4,6-dehydratase 2 OS=Escherichia coli (strain K12)
GN=rffG PE=1 SV=3
Length = 355
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 14/180 (7%)
Query: 100 DMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK----- 154
D+ D + L ++ + QP V +LAA+SHV S D E + VGT LL+A +
Sbjct: 59 DICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNA 118
Query: 155 -TCKFHHQVKFYQASTSELYGKVVETPQ--TETTPFYPRSPYACAKLYAYWIVVNYREAY 211
T +F+ ST E+YG + T TETTP+ P SPY+ +K + +V + Y
Sbjct: 119 LTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 212 NMFACNGILFNHESPRR-GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYV 270
+ N+ P E + I ++A SL + GN RDW + +D+
Sbjct: 179 GLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVY-----GNGQQIRDWLYVEDHA 233
>sp|P14169|RFBE_SALTI CDP-paratose 2-epimerase OS=Salmonella typhi GN=rfbE PE=1 SV=2
Length = 338
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 111/249 (44%), Gaps = 40/249 (16%)
Query: 50 GSYLAEFLISKGYEV---HGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
GS LA F +S+G ++ + R+ ++ N + L G+ + +GD+ + +
Sbjct: 13 GSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL---------GNFEFVHGDIRNKND 63
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
+ ++I+ P ++LA Q + S D E++ GTL LL+A++ +++
Sbjct: 64 VTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVR--QYNSNCNIIY 121
Query: 167 ASTSELYGKV--------------VETPQ--TETTPFYPRSPYACAKLYAYWIVVNYREA 210
+ST+++YG + V+ P E+T SPY C+K A +++Y
Sbjct: 122 SSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR- 180
Query: 211 YNMFACNGILFNHESPRRGENFVTRK------ITRSVAKISLGLME-YVQLGNLDSKRDW 263
+F N ++F H S G F T + +I G+ + + GN RD
Sbjct: 181 --IFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDV 238
Query: 264 GHAKDYVEV 272
HA+D + +
Sbjct: 239 LHAEDMISL 247
>sp|P44914|RMLB_HAEIN dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rffG PE=3 SV=1
Length = 338
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 26/189 (13%)
Query: 100 DMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK----- 154
D+ D + + I QP V +LAA+SHV S + + + VGT LL+ K
Sbjct: 59 DICDLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHT 118
Query: 155 -------TCKFHHQVKFYQASTSELYG--KVVETPQTETTPFYPRSPYACAKLYAYWIVV 205
T +FHH ST E+YG + E TE +P++P SPY+ +K + +V
Sbjct: 119 LDEAKKTTFRFHH------ISTDEVYGDLSLSEPAFTEQSPYHPSSPYSASKAASNHLVQ 172
Query: 206 NYREAYNM-FACNGILFNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWG 264
+ Y + N+ + + E + I+ +V L + G+ RDW
Sbjct: 173 AWHRTYGLPVIITNSSNNYGAYQHAEKLIPLMISNAVMGKPLPIY-----GDGQQIRDWL 227
Query: 265 HAKDYVEVS 273
+D+V+ S
Sbjct: 228 FVEDHVQAS 236
>sp|P37761|RMLB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3
SV=1
Length = 346
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 100 DMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKT---- 155
D+ D + L ++ + +P V +LAA+SHV + + + VGT LL+A +
Sbjct: 64 DICDRAELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQ 123
Query: 156 --CKFHHQVKFYQASTSELYGKVVETPQ--TETTPFYPRSPYACAKLYAYWIVVNYREAY 211
+ +F+ ST E+YG + T TETTP+ P SPY+ +K A +V ++ Y
Sbjct: 124 MPSEKREAFRFHHISTDEVYGDLHGTDDLFTETTPYAPSSPYSASKAAADHLVRAWQRTY 183
Query: 212 NMFACNGILFNHESPRR-GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYV 270
+ + N+ PR+ E + I +++ L + G+ RDW +D+
Sbjct: 184 RLPSIVSNCSNNYGPRQFPEKLIPLMILNALSGKPLPVY-----GDGAQIRDWLFVEDHA 238
>sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044
/ CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2
Length = 320
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 9/171 (5%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKF 158
GD+ D + +++ + V + AA++HV S S + VGT LLDA
Sbjct: 63 GDICDEGLIEGLMA--RHDTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDA---ALR 117
Query: 159 HHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNG 218
HH +F ST E+YG + E P P SPYA +K + + + Y + + M
Sbjct: 118 HHIGRFLHVSTDEVYGSIDTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMDVVVT 177
Query: 219 ILFNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDY 269
N+ PR+ F + I V ++ GL + G+ + RDW H D+
Sbjct: 178 RCSNNYGPRQ---FPEKMIPLFVTRLLDGL-DVPVYGDGRNIRDWLHVSDH 224
>sp|P55294|RMLB_NEIMB dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rfbB1 PE=3 SV=2
Length = 355
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 100 DMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKT---- 155
D+ D + L ++ + +P V +LAA+SHV S + + + VGT LL+A +
Sbjct: 59 DICDRAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQ 118
Query: 156 --CKFHHQVKFYQASTSELYGKVVETPQ--TETTPFYPRSPYACAKLYAYWIVVNYREAY 211
+ H +F+ ST E+YG + T TET P+ P SPY+ +K + +V + Y
Sbjct: 119 MPSEQHEAFRFHHISTDEVYGDLGGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 212 NM 213
+
Sbjct: 179 GL 180
>sp|Q9S642|RMLB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=rfbB1 PE=3 SV=1
Length = 341
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 100 DMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKT---- 155
D+ D + L ++ + +P V +LAA+SHV S + + + VGT LL+A +
Sbjct: 59 DICDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQ 118
Query: 156 --CKFHHQVKFYQASTSELYGKVVETPQ--TETTPFYPRSPYACAKLYAYWIVVNYREAY 211
+ H +F+ ST E+YG + T TET P+ P SPY+ +K + +V + Y
Sbjct: 119 MPSEKHEAFRFHHISTDEVYGDLSGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 212 NM 213
+
Sbjct: 179 GL 180
>sp|P37759|RMLB1_ECOLI dTDP-glucose 4,6-dehydratase 1 OS=Escherichia coli (strain K12)
GN=rfbB PE=3 SV=2
Length = 361
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 22/192 (11%)
Query: 96 LHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKT 155
+ D+ D+ + +I + QP V +LAA+SHV S E + VGT LL+A +
Sbjct: 54 FEHADICDAPAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARN 113
Query: 156 ------CKFHHQVKFYQASTSELYGKVVETPQ----------TETTPFYPRSPYACAKLY 199
+ +F+ ST E+YG + + TETT + P SPY+ +K
Sbjct: 114 YWSALDSDKKNSFRFHHISTDEVYGDLPHPDEVNNTEELPLFTETTAYAPSSPYSASKAS 173
Query: 200 AYWIVVNYREAYNMFACNGILFNHESPRR-GENFVTRKITRSVAKISLGLMEYVQLGNLD 258
+ +V ++ Y + N+ P E + I ++ +L + G D
Sbjct: 174 SDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKALPIY-----GKGD 228
Query: 259 SKRDWGHAKDYV 270
RDW + +D+
Sbjct: 229 QIRDWLYVEDHA 240
>sp|P35673|GALE_ERWAM UDP-glucose 4-epimerase OS=Erwinia amylovora GN=galE PE=3 SV=1
Length = 337
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 107/234 (45%), Gaps = 21/234 (8%)
Query: 50 GSYLAEFLISKGYEVHGI--IRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
GS+ L+ +G +V + + +S + R++ L A+ EG D+ D SCL
Sbjct: 13 GSHTVLSLLQRGDDVVILDNLSNASRESINRVEKLTGKTATFFEG-------DLLDRSCL 65
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
+ S+ + V + A V S + + GTL LL+ +++ + +F +
Sbjct: 66 RSVFSAHRISAVIHFAGLKAVGASTRKPLEYYQNNVTGTLVLLEEMRSAGVN---QFIFS 122
Query: 168 STSELYGKVVETPQTETTPF-YPRSPYACAKLYAYWIVVNYREAYNMFACNGI-LFN--- 222
S++ +YG P ETTP SPY +KL I+ +Y +A F + FN
Sbjct: 123 SSATVYGADAPVPYVETTPIGGTTSPYGTSKLMVEQILRDYAKANPEFKTIALRYFNPVG 182
Query: 223 -HESPRRGE--NFVTRKITRSVAKISLGLMEYVQL-GNLDSKRDWGHAKDYVEV 272
HES + GE N + + +A++++G +E + + G+ D +DY+ V
Sbjct: 183 AHESGQMGEDPNGIPNNLLPYIAQVAIGRLEKLGIFGDDYPTEDGTGVRDYIHV 236
>sp|P26391|RMLB_SALTY dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=rfbB PE=1 SV=1
Length = 361
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 22/193 (11%)
Query: 95 KLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK 154
+ D+ DS+ + +I QP V +LAA+SHV S E + VGT LL+ +
Sbjct: 53 NFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVAR 112
Query: 155 TC------KFHHQVKFYQASTSELYGKVVETPQ----------TETTPFYPRSPYACAKL 198
+ +F+ ST E+YG + + TETT + P SPY+ +K
Sbjct: 113 KYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKA 172
Query: 199 YAYWIVVNYREAYNMFACNGILFNHESPRR-GENFVTRKITRSVAKISLGLMEYVQLGNL 257
+ +V +R Y + N+ P E + I ++ L + G
Sbjct: 173 SSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY-----GKG 227
Query: 258 DSKRDWGHAKDYV 270
D RDW + +D+
Sbjct: 228 DQIRDWLYVEDHA 240
>sp|P37777|RMLB_SHIFL dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2
Length = 361
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 34/198 (17%)
Query: 96 LHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAI-- 153
+ D+ D+ + +I + QP V +LAA+SHV S E + VGT LL+A
Sbjct: 54 FEHADICDAVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARN 113
Query: 154 ----------KTCKFHHQVKFYQASTSELYGKVVETPQ----------TETTPFYPRSPY 193
K+ +FHH ST E+YG + + TETT + P SPY
Sbjct: 114 YWSALNDEKKKSFRFHH------ISTDEVYGDLPHPDEANNNEALPLFTETTAYAPSSPY 167
Query: 194 ACAKLYAYWIVVNYREAYNMFACNGILFNHESPRR-GENFVTRKITRSVAKISLGLMEYV 252
+ +K + +V ++ Y + N+ P E + I ++ +L +
Sbjct: 168 SASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKALPIY--- 224
Query: 253 QLGNLDSKRDWGHAKDYV 270
G D RDW + +D+
Sbjct: 225 --GKGDQIRDWLYVEDHA 240
>sp|O06485|YFNG_BACSU Putative sugar dehydratase/epimerase YfnG OS=Bacillus subtilis
(strain 168) GN=yfnG PE=3 SV=2
Length = 322
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 12/168 (7%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GSYL + LI +G V G++R + +LY H++ M + G + D + + +
Sbjct: 19 GSYLVKELIEQGANVTGLVRDHVPQS-----NLYQ--GEHIK-KMNIVRGSLEDLAVIER 70
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK-FYQAS 168
+ + V++LAAQ+ V V+ T E + +GT +L+A C+ H +K AS
Sbjct: 71 ALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEA---CRKHPLIKRVIVAS 127
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFAC 216
+ + YG P E P + PY +K A I Y Y + C
Sbjct: 128 SDKAYGDQENLPYDENMPLQGKHPYDVSKSCADLISHTYFHTYGLPVC 175
>sp|P39630|RMLB_BACSU dTDP-glucose 4,6-dehydratase OS=Bacillus subtilis (strain 168)
GN=rfbB PE=1 SV=1
Length = 315
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 9/153 (5%)
Query: 119 VYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQASTSELYG--KV 176
V + AA+SHV S +E + +GT RL +A+ K K ST E+YG K
Sbjct: 78 VIHFAAESHVDRSISQAEPFITTNVMGTYRLAEAVLKGKAK---KLIHISTDEVYGDLKA 134
Query: 177 VETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRK 236
+ TETTP P +PY+ +K + +V++Y + + + A N+ P + +
Sbjct: 135 DDPAFTETTPLSPNNPYSASKASSDLLVLSYVKTHKLPAIITRCSNNYGPYQHSEKMIPT 194
Query: 237 ITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDY 269
I R AK L + Y G+ RDW A+D+
Sbjct: 195 IIRH-AKQGLPVPLY---GDGLQIRDWLFAEDH 223
>sp|P35675|YGAE_ERWAM Uncharacterized protein in galE 3'region (Fragment) OS=Erwinia
amylovora PE=3 SV=1
Length = 164
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Query: 75 NTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDM 134
N +Q + NP H + D+ DS L + + +P V +LAA+SHV S D
Sbjct: 39 NLESLQEISDNPRDHFSKT------DICDSESLKRAFNDFEPDVVMHLAAESHVDRSIDG 92
Query: 135 SEYTAEVDAVGTLRLLDAIK------TCKFHHQVKFYQASTSELYGKVVETPQ--TETTP 186
E + +GT LL+A + + + + ST E++G + T TE T
Sbjct: 93 PAAFIETNMIGTYVLLEAARMYWLGLPVERKEAFRLHHISTDEVFGDLHGTEDLFTEQTA 152
Query: 187 FYPRSPYACAK 197
+ P SPY+ +K
Sbjct: 153 YAPSSPYSASK 163
>sp|P33119|GALE_CORDI UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=galE PE=3 SV=2
Length = 328
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 17/173 (9%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS + L+ +G+EV I+ ++ N + A+ VEG +K D+ D+
Sbjct: 13 GSVCSTVLLEQGHEVT-IVDNLTTGNRDAVPL----GATFVEGDIK----DVADN----- 58
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
++SS V + AA+S V S + + + + V TL LLDA+K + V +ST
Sbjct: 59 VLSSDSFDAVLHFAARSLVGESVEKPDEYWQHNMVTTLALLDAMKRNNVRNIVF---SST 115
Query: 170 SELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFN 222
+ YG+ P TE P +P +PY KL + + +Y AY A + FN
Sbjct: 116 AATYGEPETVPITEDAPTHPTNPYGATKLSIDYAITSYAHAYGFAATSLRYFN 168
>sp|Q5UR12|TGDS_MIMIV Putative dTDP-D-glucose 4,6-dehydratase OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R141 PE=3 SV=1
Length = 323
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 95 KLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK 154
KL GD+ + ++ ++ + + + AA SHV SF S E + GT LL+
Sbjct: 52 KLIKGDIRNFDLIMHTLTEHEIDTIVHFAAHSHVDNSFKNSLAFTETNVFGTHVLLEC-- 109
Query: 155 TCKFHHQVK-FYQASTSELYGKVVETPQT-ETTPFYPRSPYACAKLYAYWIVVNYREAYN 212
+ + ++K F+ ST E+YG++ T + E + P +PYA K A IV +Y +Y
Sbjct: 110 -SRMYGKLKLFFHMSTDEVYGEIDTTDTSREVSLLCPTNPYAATKAGAEHIVKSYFLSYK 168
Query: 213 M----FACNGILFNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKD 268
+ CN + ++ P + I + + + G ++Q G +S+R++ HA D
Sbjct: 169 LPIIIARCNNVYGRNQYPE-------KLIPKFICSLLDGKKLHIQ-GTGNSRRNFIHAID 220
Query: 269 YVE 271
+
Sbjct: 221 VAD 223
>sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1
SV=1
Length = 328
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 118 EVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQASTSELYGKVV 177
+V +LAA+SHV S + + GT LLDA H F Q ST E+YG +
Sbjct: 78 QVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDA---ATRHGVASFVQVSTDEVYGSLE 134
Query: 178 ETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKI 237
TE P P SPY+ +K + + + ++ + N+ PR+ F + I
Sbjct: 135 HGSWTEDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTRCSNNYGPRQ---FPEKLI 191
Query: 238 TRSVAKISLGLMEYVQL-GNLDSKRDWGHAKDYV 270
R + + G V L G+ + R+W H D+V
Sbjct: 192 PRFITLLMDG--HRVPLYGDGLNVREWLHVDDHV 223
>sp|P13226|GALE_STRLI UDP-glucose 4-epimerase OS=Streptomyces lividans GN=galE PE=3 SV=2
Length = 329
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 16/185 (8%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS +A+ L+ G EV + S+ F G V + GD+ D + +
Sbjct: 15 GSVVAQHLVEAGNEVVVLHNLSTGFRAG------------VPAGASFYRGDIRDQDFMRK 62
Query: 110 IISS-VQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+ + V + AA S V S E + + GT+ LL+A++ + +S
Sbjct: 63 VFRGRLSFDGVLHFAAFSQVGESVVKPEKYWDNNVGGTMALLEAMRGAGVR---RLVFSS 119
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRR 228
T+ YG+ + P E+ P P +PY +KL ++ A+ + A + FN R
Sbjct: 120 TAATYGEPEQVPIVESAPTRPTNPYGASKLAVDHMITGEAAAHGLGAVSVPYFNVAGANR 179
Query: 229 GENFV 233
G V
Sbjct: 180 GVRLV 184
>sp|P95780|RMLB_STRMU dTDP-glucose 4,6-dehydratase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=rmlB PE=1 SV=2
Length = 348
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 24/189 (12%)
Query: 94 MKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAI 153
++L GD+ DS + ++ + + + + AA+SH S + VGT LL+A
Sbjct: 56 VELVVGDIADSELVDKL--AAKADAIVHYAAESHNDNSLKDPSPFIYTNFVGTYILLEAA 113
Query: 154 KTCKFHHQVKFYQASTSELYGKVV---------ETPQ---TETTPFYPRSPYACAKLYAY 201
+ + ++F+ ST E+YG + E P T T + P SPY+ K +
Sbjct: 114 RK----YDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETKYNPSSPYSSTKAASD 169
Query: 202 WIVVNYREAYNMFACNGILFNHESP-RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSK 260
IV + ++ + A N+ P + E F+ R+IT ++ I L G +
Sbjct: 170 LIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILSGIKPKLY-----GEGKNV 224
Query: 261 RDWGHAKDY 269
RDW H D+
Sbjct: 225 RDWIHTNDH 233
>sp|P55462|RFBB_RHISN Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a03580 PE=3 SV=1
Length = 350
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHY--GDMTDSSCL 107
GS L +L+S EV + + + + N ++ VEG + D+ D +
Sbjct: 13 GSALVRYLVSINAEVLNVDKLTYAGNLASLKP--------VEGLRNYRFLRADICDRVAI 64
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK---TCKFHHQVKF 164
+ + QP V +LAA+SHV S ++ + + GT +L+ + + ++ F
Sbjct: 65 NEAFETFQPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLSQNRKAF 124
Query: 165 YQ---ASTSELYGKVVETPQ-TETTPFYPRSPYACAK 197
++ ST E+YG + + Q E +P+ P SPY+ +K
Sbjct: 125 FKMLHVSTDEVYGSLGDRGQFEEVSPYDPSSPYSASK 161
>sp|O95455|TGDS_HUMAN dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=2 SV=1
Length = 350
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 95 KLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK 154
K GD+ DS + + + + V + AAQ+HV +SF + V+ GT L+ A
Sbjct: 71 KFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAH 130
Query: 155 TCKFHHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAY 211
+ KF ST E+YG ++ E++P P +PYA +K A V +Y E Y
Sbjct: 131 EARVE---KFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQY 184
>sp|A6QLW2|TGDS_BOVIN dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1
Length = 355
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 95 KLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK 154
K GD+ DS + + + + V + AAQ+HV +SF + V+ GT L+ A
Sbjct: 71 KFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAH 130
Query: 155 TCKFHHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAY 211
+ KF ST E+YG ++ E++P P +PYA +K A V +Y E Y
Sbjct: 131 EARVE---KFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQY 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,107,924
Number of Sequences: 539616
Number of extensions: 4511924
Number of successful extensions: 10789
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 10647
Number of HSP's gapped (non-prelim): 164
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)