Your job contains 1 sequence.
>psy15786
MDLLTSKGEFKNPFRIHLYLESRTDLEYAVHKIRYRIKTLEDELEEAEDGSYLAEFLISK
GYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQIISSVQPREVY
NLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQASTSELYGKVVETP
QTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRS
VAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVSSFERIEWRDFVHTYRLYRDIGHISVTK
LQKYTQ
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15786
(306 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q6P621 - symbol:gmds "GDP-mannose 4,6-dehydrata... 980 1.0e-98 1
UNIPROTKB|E2RC02 - symbol:GMDS "Uncharacterized protein" ... 976 2.8e-98 1
UNIPROTKB|F6W683 - symbol:GMDS "Uncharacterized protein" ... 976 2.8e-98 1
UNIPROTKB|F6Z8R0 - symbol:GMDS "Uncharacterized protein" ... 976 2.8e-98 1
UNIPROTKB|Q8K3X3 - symbol:GMDS "GDP-mannose 4,6 dehydrata... 976 2.8e-98 1
MGI|MGI:1891112 - symbol:Gmds "GDP-mannose 4, 6-dehydrata... 976 2.8e-98 1
RGD|1311008 - symbol:Gmds "GDP-mannose 4, 6-dehydratase" ... 976 2.8e-98 1
UNIPROTKB|O60547 - symbol:GMDS "GDP-mannose 4,6 dehydrata... 975 3.5e-98 1
UNIPROTKB|F6W0W9 - symbol:GMDS "GDP-mannose 4,6 dehydrata... 975 3.5e-98 1
UNIPROTKB|F7EWI9 - symbol:GMDS "Uncharacterized protein" ... 975 3.5e-98 1
UNIPROTKB|F1RX12 - symbol:GMDS "Uncharacterized protein" ... 974 4.5e-98 1
UNIPROTKB|E9PI88 - symbol:GMDS "GDP-mannose 4,6 dehydrata... 973 5.8e-98 1
FB|FBgn0031661 - symbol:Gmd "GDP-mannose 4,6-dehydratase"... 968 2.0e-97 1
UNIPROTKB|B5XE59 - symbol:GMDS "GDP-mannose 4,6 dehydrata... 968 2.0e-97 1
UNIPROTKB|Q8AVI1 - symbol:gmds "Gmds-prov protein" specie... 966 3.2e-97 1
UNIPROTKB|F1P299 - symbol:GMDS "Uncharacterized protein" ... 962 8.4e-97 1
WB|WBGene00000266 - symbol:bre-1 species:6239 "Caenorhabd... 943 8.7e-95 1
UNIPROTKB|Q18801 - symbol:bre-1 "GDP-mannose 4,6 dehydrat... 943 8.7e-95 1
ZFIN|ZDB-GENE-050419-45 - symbol:gmds "GDP-mannose 4,6-de... 938 3.0e-94 1
WB|WBGene00010166 - symbol:gmd-2 species:6239 "Caenorhabd... 930 2.1e-93 1
UNIPROTKB|O45583 - symbol:gmd-2 "GDP-mannose 4,6 dehydrat... 930 2.1e-93 1
UNIPROTKB|Q06952 - symbol:rfbD "Probable GDP-mannose 4,6-... 830 8.2e-83 1
TIGR_CMR|VC_0243 - symbol:VC_0243 "GDP-mannose 4,6-dehydr... 830 8.2e-83 1
TIGR_CMR|GSU_0626 - symbol:GSU_0626 "GDP-mannose 4,6-dehy... 814 4.1e-81 1
UNIPROTKB|P0AC88 - symbol:gmd "GDP-mannose 4,6-dehydratas... 812 6.6e-81 1
TIGR_CMR|CPS_4199 - symbol:CPS_4199 "GDP-mannose 4,6-dehy... 812 6.6e-81 1
DICTYBASE|DDB_G0284553 - symbol:gmd "GDP-mannose dehydrat... 788 2.3e-78 1
UNIPROTKB|P72586 - symbol:rfbD "GDP-D-mannose dehydratase... 786 3.8e-78 1
TIGR_CMR|CBU_0689 - symbol:CBU_0689 "GDP-mannose 4,6-dehy... 713 8.6e-73 2
TAIR|locus:2080933 - symbol:MUR1 "MURUS 1" species:3702 "... 730 3.2e-72 1
TAIR|locus:2155036 - symbol:GMD1 ""GDP-D-mannose 4,6-dehy... 721 2.9e-71 1
UNIPROTKB|P71790 - symbol:gmdA "GDP-D-mannose dehydratase... 718 6.1e-71 1
GENEDB_PFALCIPARUM|PF08_0077 - symbol:PF08_0077 "GDP-mann... 710 4.3e-70 1
UNIPROTKB|Q8IAX4 - symbol:PF08_0077 "GDP-mannose 4,6-dehy... 710 4.3e-70 1
UNIPROTKB|F1MBF1 - symbol:GMDS "Uncharacterized protein" ... 607 3.5e-59 1
TIGR_CMR|CJE_1611 - symbol:CJE_1611 "GDP-mannose 4,6-dehy... 265 6.1e-23 1
UNIPROTKB|Q6T1X6 - symbol:rmd "GDP-6-deoxy-D-mannose redu... 219 1.5e-17 1
TIGR_CMR|CJE_1513 - symbol:CJE_1513 "NAD-dependent epimer... 215 1.6e-16 1
UNIPROTKB|B0RVL0 - symbol:rfbB "dTDP-glucose 4,6-dehydrat... 188 1.3e-12 1
UNIPROTKB|P0C7J0 - symbol:rfbB "dTDP-glucose 4,6-dehydrat... 188 1.3e-12 1
UNIPROTKB|O06329 - symbol:rmlB "dTDP-glucose 4,6-dehydrat... 186 1.8e-12 1
TIGR_CMR|BA_1230 - symbol:BA_1230 "dTDP-glucose 4,6-dehyd... 182 5.1e-12 1
UNIPROTKB|Q9HTB6 - symbol:rmd "GDP-6-deoxy-D-mannose redu... 176 2.2e-11 1
UNIPROTKB|A0QSK6 - symbol:rmlB "dTDP-glucose 4,6-dehydrat... 168 2.8e-10 1
UNIPROTKB|Q6MWV3 - symbol:galE1 "UDP-glucose 4-epimerase"... 164 7.0e-10 1
UNIPROTKB|P44914 - symbol:rffG "dTDP-glucose 4,6-dehydrat... 161 2.0e-09 1
UNIPROTKB|P27830 - symbol:rffG "dTDP-glucose 4,6-dehydrat... 161 2.3e-09 1
TIGR_CMR|GSU_1975 - symbol:GSU_1975 "NAD-dependent epimer... 157 5.8e-09 1
UNIPROTKB|O53634 - symbol:gca "POSSIBLE GDP-MANNOSE 4,6-D... 155 8.5e-09 1
TIGR_CMR|SO_3167 - symbol:SO_3167 "dTDP-glucose 4,6-dehyd... 153 1.8e-08 1
UNIPROTKB|Q0C421 - symbol:HNE_0794 "Putative GDP-6-deoxy-... 152 2.0e-08 1
TIGR_CMR|CHY_0979 - symbol:CHY_0979 "dTDP-glucose 4,6-deh... 150 3.0e-08 1
UNIPROTKB|P37761 - symbol:rfbB "dTDP-glucose 4,6-dehydrat... 146 1.2e-07 1
UNIPROTKB|Q9ZAE8 - symbol:acbB "dTDP-glucose 4,6-dehydrat... 144 1.7e-07 1
TIGR_CMR|GSU_2366 - symbol:GSU_2366 "dTDP-glucose 4,6-deh... 144 2.2e-07 1
UNIPROTKB|P55294 - symbol:rfbB1 "dTDP-glucose 4,6-dehydra... 142 3.6e-07 1
UNIPROTKB|Q9S642 - symbol:rfbB1 "dTDP-glucose 4,6-dehydra... 141 4.3e-07 1
RGD|1306544 - symbol:Tgds "TDP-glucose 4,6-dehydratase" s... 134 3.0e-06 1
UNIPROTKB|P29782 - symbol:strE "dTDP-glucose 4,6-dehydrat... 132 4.3e-06 1
WB|WBGene00018737 - symbol:F53B1.4 species:6239 "Caenorha... 132 4.7e-06 1
UNIPROTKB|F1RP60 - symbol:TGDS "Uncharacterized protein" ... 132 5.1e-06 1
MGI|MGI:1923605 - symbol:Tgds "TDP-glucose 4,6-dehydratas... 132 5.1e-06 1
UNIPROTKB|P37759 - symbol:rfbB "RmlB" species:83333 "Esch... 130 8.8e-06 1
UNIPROTKB|P26391 - symbol:rfbB "dTDP-glucose 4,6-dehydrat... 130 8.8e-06 1
UNIPROTKB|O95455 - symbol:TGDS "dTDP-D-glucose 4,6-dehydr... 129 1.1e-05 1
UNIPROTKB|A6QLW2 - symbol:TGDS "dTDP-D-glucose 4,6-dehydr... 129 1.1e-05 1
UNIPROTKB|Q489C2 - symbol:CPS_0592 "Capsular polysacchari... 127 1.7e-05 1
TIGR_CMR|CPS_0592 - symbol:CPS_0592 "capsular polysacchar... 127 1.7e-05 1
TAIR|locus:2202960 - symbol:RHM1 "rhamnose biosynthesis 1... 131 1.8e-05 1
UNIPROTKB|E2QWQ8 - symbol:TGDS "Uncharacterized protein" ... 124 4.1e-05 1
UNIPROTKB|P37777 - symbol:rfbB "dTDP-glucose 4,6-dehydrat... 124 4.2e-05 1
TAIR|locus:2099372 - symbol:RHM3 "rhamnose biosynthesis 3... 127 5.0e-05 1
UNIPROTKB|F1P029 - symbol:TGDS "Uncharacterized protein" ... 121 9.4e-05 1
UNIPROTKB|Q8E8H8 - symbol:wcvA "UDP-glucuronate 4-epimera... 119 0.00014 1
TIGR_CMR|SO_4686 - symbol:SO_4686 "NAD dependent epimeras... 119 0.00014 1
ZFIN|ZDB-GENE-030131-5718 - symbol:tgds "TDP-glucose 4,6-... 118 0.00019 1
UNIPROTKB|P95780 - symbol:rmlB "dTDP-glucose 4,6-dehydrat... 118 0.00019 1
DICTYBASE|DDB_G0279465 - symbol:tgds "putative dTDP-D-glu... 118 0.00028 1
UNIPROTKB|Q4K5C5 - symbol:PFL_5490 "NAD dependent epimera... 109 0.00042 2
TAIR|locus:2024902 - symbol:MUM4 "MUCILAGE-MODIFIED 4" sp... 118 0.00051 1
TAIR|locus:2123466 - symbol:UGE5 "UDP-D-glucose/UDP-D-gal... 114 0.00054 1
UNIPROTKB|Q6A1A4 - symbol:galE "UDP-galactose 4-epimerase... 113 0.00066 1
TIGR_CMR|CHY_0545 - symbol:CHY_0545 "UDP-glucose 4-epimer... 112 0.00081 1
TAIR|locus:2204639 - symbol:MUR4 "MURUS 4" species:3702 "... 113 0.00094 1
>UNIPROTKB|Q6P621 [details] [associations]
symbol:gmds "GDP-mannose 4,6-dehydratase" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005575 "cellular_component"
evidence=ND] [GO:0007219 "Notch signaling pathway" evidence=ISS]
[GO:0008446 "GDP-mannose 4,6-dehydratase activity" evidence=ISS]
[GO:0019673 "GDP-mannose metabolic process" evidence=ISS]
[GO:0042351 "'de novo' GDP-L-fucose biosynthetic process"
evidence=ISS] [GO:0070401 "NADP+ binding" evidence=ISS]
InterPro:IPR001509 InterPro:IPR006368 Pfam:PF01370
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0007219 GO:GO:0005622
GO:GO:0070401 GO:GO:0019673 GO:GO:0042351 GO:GO:0008446
TIGRFAMs:TIGR01472 HOGENOM:HOG000168003
GeneTree:ENSGT00440000033640 OMA:IAYNLTD HOVERGEN:HBG000727
OrthoDB:EOG4FXR7M EMBL:AAMC01033108 EMBL:AAMC01033109
EMBL:AAMC01033110 EMBL:AAMC01033111 EMBL:AAMC01033112
EMBL:AAMC01033113 EMBL:AAMC01033114 EMBL:AAMC01033115
EMBL:AAMC01033116 EMBL:AAMC01033117 EMBL:AAMC01033118
EMBL:AAMC01033119 EMBL:AAMC01033120 EMBL:AAMC01033121
EMBL:AAMC01033122 EMBL:AAMC01033123 EMBL:AAMC01033124
EMBL:AAMC01033125 EMBL:AAMC01033126 EMBL:AAMC01033127
EMBL:AAMC01033128 EMBL:AAMC01033129 EMBL:AAMC01033130
EMBL:AAMC01033131 EMBL:AAMC01033132 EMBL:BC062513 UniGene:Str.7169
ProteinModelPortal:Q6P621 STRING:Q6P621 Ensembl:ENSXETT00000001321
Xenbase:XB-GENE-943015 InParanoid:Q6P621 Bgee:Q6P621 Uniprot:Q6P621
Length = 383
Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
Identities = 182/239 (76%), Positives = 207/239 (86%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+CL
Sbjct: 45 QDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPHAHIEGNMKLHYGDLTDSTCL 104
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
V+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD +GTLRLLDA KTC + VKFYQA
Sbjct: 105 VKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGLGTLRLLDATKTCGLINSVKFYQA 164
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPR
Sbjct: 165 STSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR 224
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RG NFVTRKI+RSVAKI LG ME+V LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 225 RGANFVTRKISRSVAKIHLGQMEFVSLGNLDAKRDWGHAKDYVEAMWLMLQTDEPEDFV 283
>UNIPROTKB|E2RC02 [details] [associations]
symbol:GMDS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070401 "NADP+ binding" evidence=IEA]
[GO:0019673 "GDP-mannose metabolic process" evidence=IEA]
[GO:0008446 "GDP-mannose 4,6-dehydratase activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR001509
InterPro:IPR006368 Pfam:PF01370 InterPro:IPR016040
Gene3D:3.40.50.720 GO:GO:0005622 GO:GO:0070401 GO:GO:0019673
GO:GO:0008446 TIGRFAMs:TIGR01472 GeneTree:ENSGT00440000033640
OMA:DAIRDWG EMBL:AAEX03017462 Ensembl:ENSCAFT00000014648
Uniprot:E2RC02
Length = 300
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 181/240 (75%), Positives = 207/240 (86%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
++DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+C
Sbjct: 4 SQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTC 63
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
LV+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDA+KTC + VKFYQ
Sbjct: 64 LVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQ 123
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESP
Sbjct: 124 ASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESP 183
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RRG NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 184 RRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFV 243
>UNIPROTKB|F6W683 [details] [associations]
symbol:GMDS "Uncharacterized protein" species:9796 "Equus
caballus" [GO:0005575 "cellular_component" evidence=ND] [GO:0007219
"Notch signaling pathway" evidence=ISS] [GO:0008446 "GDP-mannose
4,6-dehydratase activity" evidence=ISS] [GO:0019673 "GDP-mannose
metabolic process" evidence=ISS] [GO:0042351 "'de novo'
GDP-L-fucose biosynthetic process" evidence=ISS] [GO:0070401 "NADP+
binding" evidence=ISS] InterPro:IPR001509 InterPro:IPR006368
Pfam:PF01370 InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0007219
GO:GO:0005622 GO:GO:0070401 GO:GO:0019673 GO:GO:0042351
GO:GO:0008446 TIGRFAMs:TIGR01472 GeneTree:ENSGT00440000033640
OMA:IAYNLTD Ensembl:ENSECAT00000001963 Uniprot:F6W683
Length = 343
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 181/240 (75%), Positives = 207/240 (86%)
Query: 47 AEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
++DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+C
Sbjct: 4 SQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTC 63
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
LV+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDA+KTC + VKFYQ
Sbjct: 64 LVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQ 123
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESP
Sbjct: 124 ASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESP 183
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RRG NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 184 RRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFV 243
>UNIPROTKB|F6Z8R0 [details] [associations]
symbol:GMDS "Uncharacterized protein" species:13616
"Monodelphis domestica" [GO:0005575 "cellular_component"
evidence=ND] [GO:0007219 "Notch signaling pathway" evidence=ISS]
[GO:0008446 "GDP-mannose 4,6-dehydratase activity" evidence=ISS]
[GO:0019673 "GDP-mannose metabolic process" evidence=ISS]
[GO:0042351 "'de novo' GDP-L-fucose biosynthetic process"
evidence=ISS] [GO:0070401 "NADP+ binding" evidence=ISS]
InterPro:IPR001509 InterPro:IPR006368 Pfam:PF01370
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0007219 GO:GO:0005622
GO:GO:0070401 GO:GO:0019673 GO:GO:0042351 GO:GO:0008446
TIGRFAMs:TIGR01472 GeneTree:ENSGT00440000033640 OMA:IAYNLTD
Ensembl:ENSMODT00000010461 Uniprot:F6Z8R0
Length = 347
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 182/239 (76%), Positives = 206/239 (86%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+CL
Sbjct: 34 QDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCL 93
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
V+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDAIKTC + VKFYQA
Sbjct: 94 VKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAIKTCGLINSVKFYQA 153
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPR
Sbjct: 154 STSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR 213
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RG NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 214 RGANFVTRKISRSVAKIHLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQTDEPEDFV 272
>UNIPROTKB|Q8K3X3 [details] [associations]
symbol:GMDS "GDP-mannose 4,6 dehydratase" species:10029
"Cricetulus griseus" [GO:0005575 "cellular_component" evidence=ND]
[GO:0007219 "Notch signaling pathway" evidence=ISS] [GO:0008446
"GDP-mannose 4,6-dehydratase activity" evidence=ISS] [GO:0019673
"GDP-mannose metabolic process" evidence=ISS] [GO:0042351 "'de
novo' GDP-L-fucose biosynthetic process" evidence=ISS] [GO:0070401
"NADP+ binding" evidence=ISS] InterPro:IPR001509 InterPro:IPR006368
Pfam:PF01370 UniPathway:UPA00128 InterPro:IPR016040
Gene3D:3.40.50.720 GO:GO:0007219 GO:GO:0005622 GO:GO:0070401
GO:GO:0019673 GO:GO:0042351 GO:GO:0008446 TIGRFAMs:TIGR01472
EMBL:AF525364 RefSeq:NP_001233625.1 ProteinModelPortal:Q8K3X3
SMR:Q8K3X3 GeneID:100689436 CTD:33716 HOVERGEN:HBG000727
Uniprot:Q8K3X3
Length = 372
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 182/239 (76%), Positives = 206/239 (86%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+CL
Sbjct: 34 QDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCL 93
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
V+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDAIKTC + VKFYQA
Sbjct: 94 VKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAIKTCGLINSVKFYQA 153
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPR
Sbjct: 154 STSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR 213
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RG NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 214 RGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFV 272
>MGI|MGI:1891112 [details] [associations]
symbol:Gmds "GDP-mannose 4, 6-dehydratase" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0008446 "GDP-mannose 4,6-dehydratase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0019673 "GDP-mannose metabolic process" evidence=ISO]
[GO:0042351 "'de novo' GDP-L-fucose biosynthetic process"
evidence=ISO] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
[GO:0070401 "NADP+ binding" evidence=ISO] InterPro:IPR001509
InterPro:IPR006368 Pfam:PF01370 UniPathway:UPA00128
InterPro:IPR016040 MGI:MGI:1891112 Gene3D:3.40.50.720 GO:GO:0007219
GO:GO:0005622 GO:GO:0070401 GO:GO:0019673 GO:GO:0042351
eggNOG:COG1089 KO:K01711 GO:GO:0008446 TIGRFAMs:TIGR01472
HOGENOM:HOG000168003 GeneTree:ENSGT00440000033640 OMA:IAYNLTD
HOVERGEN:HBG000727 CTD:2762 OrthoDB:EOG4FXR7M EMBL:AL645643
EMBL:AL645664 EMBL:AL645697 EMBL:AL645783 EMBL:AL645763
EMBL:BC031788 EMBL:BC093502 IPI:IPI00169546 RefSeq:NP_666153.1
UniGene:Mm.247143 ProteinModelPortal:Q8K0C9 SMR:Q8K0C9
STRING:Q8K0C9 PhosphoSite:Q8K0C9 PaxDb:Q8K0C9 PRIDE:Q8K0C9
Ensembl:ENSMUST00000041859 GeneID:218138 KEGG:mmu:218138
UCSC:uc007pzq.1 InParanoid:Q8K0C9 NextBio:376160 Bgee:Q8K0C9
CleanEx:MM_GMDS Genevestigator:Q8K0C9 GermOnline:ENSMUSG00000038372
Uniprot:Q8K0C9
Length = 372
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 182/239 (76%), Positives = 206/239 (86%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+CL
Sbjct: 34 QDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCL 93
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
V+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDAIKTC + VKFYQA
Sbjct: 94 VKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAIKTCGLINSVKFYQA 153
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPR
Sbjct: 154 STSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR 213
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RG NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 214 RGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFV 272
>RGD|1311008 [details] [associations]
symbol:Gmds "GDP-mannose 4, 6-dehydratase" species:10116 "Rattus
norvegicus" [GO:0005575 "cellular_component" evidence=ND]
[GO:0005622 "intracellular" evidence=IEA] [GO:0007219 "Notch
signaling pathway" evidence=ISS] [GO:0008446 "GDP-mannose
4,6-dehydratase activity" evidence=ISO;ISS] [GO:0019673
"GDP-mannose metabolic process" evidence=ISO;ISS] [GO:0042351 "'de
novo' GDP-L-fucose biosynthetic process" evidence=ISO;ISS]
[GO:0070401 "NADP+ binding" evidence=ISO;ISS] InterPro:IPR001509
InterPro:IPR006368 Pfam:PF01370 InterPro:IPR016040 RGD:1311008
Gene3D:3.40.50.720 GO:GO:0007219 GO:GO:0005622 GO:GO:0070401
EMBL:CH473977 GO:GO:0019673 GO:GO:0042351 eggNOG:COG1089 KO:K01711
GO:GO:0008446 TIGRFAMs:TIGR01472 HOGENOM:HOG000168003
GeneTree:ENSGT00440000033640 OMA:IAYNLTD HOVERGEN:HBG000727
CTD:2762 OrthoDB:EOG4FXR7M EMBL:BC104708 IPI:IPI00362967
RefSeq:NP_001034695.1 UniGene:Rn.212995 SMR:Q3MHS7 STRING:Q3MHS7
Ensembl:ENSRNOT00000023691 GeneID:291095 KEGG:rno:291095
UCSC:RGD:1311008 InParanoid:Q3MHS7 NextBio:632111
Genevestigator:Q3MHS7 Uniprot:Q3MHS7
Length = 372
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 182/239 (76%), Positives = 206/239 (86%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+CL
Sbjct: 34 QDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCL 93
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
V+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDAIKTC + VKFYQA
Sbjct: 94 VKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAIKTCGLINSVKFYQA 153
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPR
Sbjct: 154 STSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR 213
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RG NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 214 RGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFV 272
>UNIPROTKB|O60547 [details] [associations]
symbol:GMDS "GDP-mannose 4,6 dehydratase" species:9606
"Homo sapiens" [GO:0042351 "'de novo' GDP-L-fucose biosynthetic
process" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IC]
[GO:0070401 "NADP+ binding" evidence=IDA] [GO:0008446 "GDP-mannose
4,6-dehydratase activity" evidence=IGI;IDA] [GO:0019673
"GDP-mannose metabolic process" evidence=IGI;IDA] [GO:0007219
"Notch signaling pathway" evidence=ISS] InterPro:IPR001509
InterPro:IPR006368 Pfam:PF01370 UniPathway:UPA00128
InterPro:IPR016040 GO:GO:0005737 Gene3D:3.40.50.720 GO:GO:0007219
GO:GO:0070401 GO:GO:0019673 GO:GO:0042351 EMBL:AL034344
eggNOG:COG1089 KO:K01711 GO:GO:0008446 TIGRFAMs:TIGR01472
HOGENOM:HOG000168003 OMA:IAYNLTD HOVERGEN:HBG000727 EMBL:AF042377
EMBL:CR541929 EMBL:CR541947 EMBL:AL033517 EMBL:AL035693
EMBL:AL137179 EMBL:AL158139 EMBL:BC000117 EMBL:AF040260
IPI:IPI00030207 RefSeq:NP_001240775.1 RefSeq:NP_001491.1
UniGene:Hs.144496 UniGene:Hs.660919 PDB:1T2A PDBsum:1T2A
ProteinModelPortal:O60547 SMR:O60547 IntAct:O60547 STRING:O60547
PhosphoSite:O60547 PaxDb:O60547 PeptideAtlas:O60547 PRIDE:O60547
DNASU:2762 Ensembl:ENST00000380815 GeneID:2762 KEGG:hsa:2762
UCSC:uc003mtq.3 CTD:2762 GeneCards:GC06M001624 HGNC:HGNC:4369
HPA:HPA031528 MIM:602884 neXtProt:NX_O60547 PharmGKB:PA28754
InParanoid:O60547 OrthoDB:EOG4FXR7M PhylomeDB:O60547 ChiTaRS:GMDS
EvolutionaryTrace:O60547 GenomeRNAi:2762 NextBio:10866
ArrayExpress:O60547 Bgee:O60547 CleanEx:HS_GMDS
Genevestigator:O60547 GermOnline:ENSG00000112699 Uniprot:O60547
Length = 372
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 181/239 (75%), Positives = 206/239 (86%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+CL
Sbjct: 34 QDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCL 93
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
V+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDA+KTC + VKFYQA
Sbjct: 94 VKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQA 153
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPR
Sbjct: 154 STSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR 213
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RG NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 214 RGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFV 272
>UNIPROTKB|F6W0W9 [details] [associations]
symbol:GMDS "GDP-mannose 4,6 dehydratase isoform 1"
species:9544 "Macaca mulatta" [GO:0005575 "cellular_component"
evidence=ND] [GO:0007219 "Notch signaling pathway" evidence=ISS]
[GO:0008446 "GDP-mannose 4,6-dehydratase activity" evidence=ISS]
[GO:0019673 "GDP-mannose metabolic process" evidence=ISS]
[GO:0042351 "'de novo' GDP-L-fucose biosynthetic process"
evidence=ISS] [GO:0070401 "NADP+ binding" evidence=ISS]
InterPro:IPR001509 InterPro:IPR006368 Pfam:PF01370
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0007219 GO:GO:0005622
GO:GO:0070401 GO:GO:0019673 GO:GO:0042351 KO:K01711 GO:GO:0008446
TIGRFAMs:TIGR01472 GeneTree:ENSGT00440000033640 OMA:IAYNLTD
CTD:2762 EMBL:JU322217 EMBL:JV046790 RefSeq:NP_001253718.1
UniGene:Mmu.34300 Ensembl:ENSMMUT00000008111 GeneID:707051
KEGG:mcc:707051 NextBio:19971634 Uniprot:F6W0W9
Length = 372
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 181/239 (75%), Positives = 206/239 (86%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+CL
Sbjct: 34 QDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCL 93
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
V+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDA+KTC + VKFYQA
Sbjct: 94 VKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQA 153
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPR
Sbjct: 154 STSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR 213
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RG NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 214 RGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFV 272
>UNIPROTKB|F7EWI9 [details] [associations]
symbol:GMDS "Uncharacterized protein" species:9483
"Callithrix jacchus" [GO:0005575 "cellular_component" evidence=ND]
[GO:0007219 "Notch signaling pathway" evidence=ISS] [GO:0008446
"GDP-mannose 4,6-dehydratase activity" evidence=ISS] [GO:0019673
"GDP-mannose metabolic process" evidence=ISS] [GO:0042351 "'de
novo' GDP-L-fucose biosynthetic process" evidence=ISS] [GO:0070401
"NADP+ binding" evidence=ISS] InterPro:IPR001509 InterPro:IPR006368
Pfam:PF01370 InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0007219
GO:GO:0005622 GO:GO:0070401 GO:GO:0019673 GO:GO:0042351
GO:GO:0008446 TIGRFAMs:TIGR01472 GeneTree:ENSGT00440000033640
OMA:IAYNLTD CTD:2762 EMBL:ACFV01112271 EMBL:ACFV01112272
EMBL:ACFV01112273 EMBL:ACFV01112274 EMBL:ACFV01112275
EMBL:ACFV01112276 EMBL:ACFV01112277 EMBL:ACFV01112278
EMBL:ACFV01112279 EMBL:ACFV01112280 EMBL:ACFV01112281
EMBL:ACFV01112282 EMBL:ACFV01112283 EMBL:ACFV01112284
EMBL:ACFV01112285 EMBL:ACFV01112286 EMBL:ACFV01112287
EMBL:ACFV01112288 EMBL:ACFV01112289 EMBL:ACFV01112290
EMBL:ACFV01112291 EMBL:ACFV01112292 EMBL:ACFV01112293
EMBL:ACFV01112294 EMBL:ACFV01112295 EMBL:ACFV01112296
EMBL:ACFV01112297 EMBL:ACFV01112298 EMBL:ACFV01112299
EMBL:ACFV01112300 EMBL:ACFV01112301 RefSeq:XP_002746325.1
ProteinModelPortal:F7EWI9 Ensembl:ENSCJAT00000038466
GeneID:100390839 Uniprot:F7EWI9
Length = 372
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 181/239 (75%), Positives = 206/239 (86%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+CL
Sbjct: 34 QDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCL 93
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
V+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDA+KTC + VKFYQA
Sbjct: 94 VKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQA 153
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPR
Sbjct: 154 STSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR 213
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RG NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 214 RGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFV 272
>UNIPROTKB|F1RX12 [details] [associations]
symbol:GMDS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007219 "Notch signaling pathway" evidence=ISS]
[GO:0019673 "GDP-mannose metabolic process" evidence=ISS]
[GO:0070401 "NADP+ binding" evidence=ISS] [GO:0008446 "GDP-mannose
4,6-dehydratase activity" evidence=ISS] [GO:0042351 "'de novo'
GDP-L-fucose biosynthetic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001509 InterPro:IPR006368 Pfam:PF01370
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0007219 GO:GO:0005622
GO:GO:0070401 GO:GO:0019673 GO:GO:0042351 KO:K01711 GO:GO:0008446
TIGRFAMs:TIGR01472 GeneTree:ENSGT00440000033640 OMA:IAYNLTD
CTD:2762 EMBL:CT961043 EMBL:CU302446 EMBL:CU682457
RefSeq:XP_003128195.3 Ensembl:ENSSSCT00000001084 GeneID:100520846
KEGG:ssc:100520846 Uniprot:F1RX12
Length = 350
Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
Identities = 181/239 (75%), Positives = 206/239 (86%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+CL
Sbjct: 12 QDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCL 71
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
V+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDA+KTC V+FYQA
Sbjct: 72 VKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLIGSVRFYQA 131
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSELYGKV ETPQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPR
Sbjct: 132 STSELYGKVQETPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR 191
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RG NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 192 RGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQSDEPEDFV 250
>UNIPROTKB|E9PI88 [details] [associations]
symbol:GMDS "GDP-mannose 4,6 dehydratase" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0008446 "GDP-mannose
4,6-dehydratase activity" evidence=IEA] [GO:0019673 "GDP-mannose
metabolic process" evidence=IEA] [GO:0050662 "coenzyme binding"
evidence=IEA] InterPro:IPR001509 InterPro:IPR006368 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0005622 GO:GO:0019673 EMBL:AL034344 KO:K01711 GO:GO:0008446
TIGRFAMs:TIGR01472 EMBL:AL033517 EMBL:AL035693 EMBL:AL137179
EMBL:AL158139 RefSeq:NP_001240775.1 UniGene:Hs.144496
UniGene:Hs.660919 GeneID:2762 KEGG:hsa:2762 CTD:2762 HGNC:HGNC:4369
ChiTaRS:GMDS GenomeRNAi:2762 EMBL:AL354670 EMBL:AL451141
EMBL:AL591048 IPI:IPI00642048 ProteinModelPortal:E9PI88 SMR:E9PI88
Ensembl:ENST00000530927 UCSC:uc021ykn.1 ArrayExpress:E9PI88
Bgee:E9PI88 Uniprot:E9PI88
Length = 342
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 181/238 (76%), Positives = 205/238 (86%)
Query: 49 DGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+CLV
Sbjct: 5 DGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLV 64
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDA+KTC + VKFYQAS
Sbjct: 65 KIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS 124
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRR 228
TSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPRR
Sbjct: 125 TSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRR 184
Query: 229 GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
G NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 185 GANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFV 242
>FB|FBgn0031661 [details] [associations]
symbol:Gmd "GDP-mannose 4,6-dehydratase" species:7227
"Drosophila melanogaster" [GO:0008446 "GDP-mannose 4,6-dehydratase
activity" evidence=ISS;IDA] [GO:0042351 "'de novo' GDP-L-fucose
biosynthetic process" evidence=ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0019673 "GDP-mannose metabolic process" evidence=IEA]
[GO:0050662 "coenzyme binding" evidence=IEA] [GO:0042350
"GDP-L-fucose biosynthetic process" evidence=IDA] [GO:0007219
"Notch signaling pathway" evidence=IMP] [GO:2000035 "regulation of
stem cell division" evidence=IMP] InterPro:IPR001509
InterPro:IPR006368 Pfam:PF01370 UniPathway:UPA00128
InterPro:IPR016040 EMBL:AE014134 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0007219 GO:GO:0005622 GO:GO:2000035
GO:GO:0019673 GO:GO:0042351 eggNOG:COG1089 KO:K01711 OMA:INPKYFR
GO:GO:0008446 TIGRFAMs:TIGR01472 GeneTree:ENSGT00440000033640
GO:GO:0042350 CTD:33716 EMBL:AM231687 EMBL:AY089519
RefSeq:NP_608888.2 UniGene:Dm.4967 ProteinModelPortal:Q9VMW9
SMR:Q9VMW9 STRING:Q9VMW9 PaxDb:Q9VMW9 EnsemblMetazoa:FBtr0079049
GeneID:33716 KEGG:dme:Dmel_CG8890 FlyBase:FBgn0031661
InParanoid:Q9VMW9 OrthoDB:EOG40K6FB PhylomeDB:Q9VMW9
GenomeRNAi:33716 NextBio:784930 Bgee:Q9VMW9 GermOnline:CG8890
Uniprot:Q9VMW9
Length = 395
Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
Identities = 179/224 (79%), Positives = 200/224 (89%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYLAEFL+ K YEVHGIIRR+S+FNT RI+HLY++P +H G MKLHYGDMTDSS L
Sbjct: 57 QDGSYLAEFLLKKDYEVHGIIRRASTFNTTRIEHLYADPKAHKGGRMKLHYGDMTDSSSL 116
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
V+II+ V+P E+YNLAAQSHVKVSFD+SEYTAEVDAVGTLR+LDAI+TC V+FYQA
Sbjct: 117 VKIINMVKPTEIYNLAAQSHVKVSFDLSEYTAEVDAVGTLRILDAIRTCGMEKNVRFYQA 176
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSELYGKVVETPQ E TPFYPRSPYACAK+Y +WIV+NYREAYNM+ACNGILFNHESPR
Sbjct: 177 STSELYGKVVETPQNEQTPFYPRSPYACAKMYGFWIVINYREAYNMYACNGILFNHESPR 236
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
RGENFVTRKITRSVAKI MEY +LGNLDSKRDWGHA DYVE
Sbjct: 237 RGENFVTRKITRSVAKIYHKQMEYFELGNLDSKRDWGHASDYVE 280
>UNIPROTKB|B5XE59 [details] [associations]
symbol:GMDS "GDP-mannose 4,6 dehydratase" species:8030
"Salmo salar" [GO:0005575 "cellular_component" evidence=ND]
[GO:0007219 "Notch signaling pathway" evidence=ISS] [GO:0008446
"GDP-mannose 4,6-dehydratase activity" evidence=ISS] [GO:0019673
"GDP-mannose metabolic process" evidence=ISS] [GO:0042351 "'de
novo' GDP-L-fucose biosynthetic process" evidence=ISS] [GO:0070401
"NADP+ binding" evidence=ISS] InterPro:IPR001509 InterPro:IPR006368
Pfam:PF01370 InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0007219
GO:GO:0005622 GO:GO:0070401 GO:GO:0019673 GO:GO:0042351
GO:GO:0008446 TIGRFAMs:TIGR01472 HOVERGEN:HBG000727 CTD:2762
EMBL:BT049328 RefSeq:NP_001134845.1 UniGene:Ssa.6439
ProteinModelPortal:B5XE59 GeneID:100196344 Uniprot:B5XE59
Length = 370
Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
Identities = 178/224 (79%), Positives = 199/224 (88%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H EG+MKLHYGD+TDS+CL
Sbjct: 32 QDGSYLAEFLLEKGYEVHGILRRSSSFNTGRIEHLYQNPQTHTEGNMKLHYGDLTDSTCL 91
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
V+II+ V+P E+YNL AQSHVK+SF+++EYTA VD VGTLRLLDAIKTC + VKFYQA
Sbjct: 92 VKIINQVKPTEIYNLGAQSHVKISFELAEYTANVDGVGTLRLLDAIKTCGLTNSVKFYQA 151
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPR
Sbjct: 152 STSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR 211
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
RG NFVTRKI+RSVAKI LG +E LGNLDSKRDWGHAKDYVE
Sbjct: 212 RGANFVTRKISRSVAKIHLGQLESFSLGNLDSKRDWGHAKDYVE 255
>UNIPROTKB|Q8AVI1 [details] [associations]
symbol:gmds "Gmds-prov protein" species:8355 "Xenopus
laevis" [GO:0005575 "cellular_component" evidence=ND] [GO:0007219
"Notch signaling pathway" evidence=ISS] [GO:0008446 "GDP-mannose
4,6-dehydratase activity" evidence=ISS] [GO:0019673 "GDP-mannose
metabolic process" evidence=ISS] [GO:0042351 "'de novo'
GDP-L-fucose biosynthetic process" evidence=ISS] [GO:0070401 "NADP+
binding" evidence=ISS] InterPro:IPR001509 InterPro:IPR006368
Pfam:PF01370 InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0007219
GO:GO:0005622 GO:GO:0070401 GO:GO:0019673 GO:GO:0042351 KO:K01711
GO:GO:0008446 TIGRFAMs:TIGR01472 HOVERGEN:HBG000727 CTD:2762
HSSP:P32054 EMBL:BC042270 EMBL:BC111472 RefSeq:NP_001080352.1
UniGene:Xl.10260 SMR:Q8AVI1 GeneID:380044 KEGG:xla:380044
Xenbase:XB-GENE-943021 Uniprot:Q8AVI1
Length = 369
Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
Identities = 181/239 (75%), Positives = 204/239 (85%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H EG+MKLHYGD+TDS+CL
Sbjct: 31 QDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPHAHTEGNMKLHYGDLTDSTCL 90
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
V+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD +GTLRLLDA KTC + VKFYQA
Sbjct: 91 VKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGLGTLRLLDATKTCGLINTVKFYQA 150
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPR
Sbjct: 151 STSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR 210
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RG NFVTRKI+RSVAKI LG ME LGNLD+KRDWGHAKDYVE + E DFV
Sbjct: 211 RGANFVTRKISRSVAKIHLGQMESFSLGNLDAKRDWGHAKDYVEAMWLMLQTDEPEDFV 269
>UNIPROTKB|F1P299 [details] [associations]
symbol:GMDS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0007219 "Notch signaling
pathway" evidence=ISS] [GO:0042351 "'de novo' GDP-L-fucose
biosynthetic process" evidence=ISS] [GO:0008446 "GDP-mannose
4,6-dehydratase activity" evidence=ISS] [GO:0019673 "GDP-mannose
metabolic process" evidence=ISS] [GO:0070401 "NADP+ binding"
evidence=ISS] InterPro:IPR001509 InterPro:IPR006368 Pfam:PF01370
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0007219 GO:GO:0005622
GO:GO:0070401 GO:GO:0019673 GO:GO:0042351 GO:GO:0008446
TIGRFAMs:TIGR01472 GeneTree:ENSGT00440000033640 OMA:IAYNLTD
EMBL:AADN02036511 EMBL:AADN02036512 EMBL:AADN02036513
EMBL:AADN02036514 EMBL:AADN02036515 EMBL:AADN02036516
EMBL:AADN02036517 EMBL:AADN02036518 IPI:IPI00578850
Ensembl:ENSGALT00000020945 Uniprot:F1P299
Length = 358
Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
Identities = 179/239 (74%), Positives = 205/239 (85%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY N +H+EG+MKLHYGD+TDS+CL
Sbjct: 20 QDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNSQAHIEGNMKLHYGDLTDSTCL 79
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
V+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDAIKTC + VKFYQA
Sbjct: 80 VKIINEVKPNEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAIKTCGLINSVKFYQA 139
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSEL+GKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPR
Sbjct: 140 STSELFGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR 199
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RG NFVTRKI+RSVAKI LG M+ LGNLD+KRDWGHA+DYVE + E DFV
Sbjct: 200 RGANFVTRKISRSVAKIHLGQMDSFSLGNLDAKRDWGHARDYVEAMWLMLQTDEPEDFV 258
>WB|WBGene00000266 [details] [associations]
symbol:bre-1 species:6239 "Caenorhabditis elegans"
[GO:0019673 "GDP-mannose metabolic process" evidence=IEA;IDA]
[GO:0008446 "GDP-mannose 4,6-dehydratase activity"
evidence=IEA;IDA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0044237 "cellular metabolic process" evidence=IEA] [GO:0050662
"coenzyme binding" evidence=IEA] [GO:0009058 "biosynthetic process"
evidence=IEA] [GO:0008831 "dTDP-4-dehydrorhamnose reductase
activity" evidence=IEA] [GO:0045226 "extracellular polysaccharide
biosynthetic process" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0071688 "striated muscle myosin thick filament assembly"
evidence=IMP] [GO:0042350 "GDP-L-fucose biosynthetic process"
evidence=IDA] [GO:0055120 "striated muscle dense body"
evidence=IDA] [GO:0030017 "sarcomere" evidence=IDA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] InterPro:IPR001509
InterPro:IPR006368 Pfam:PF01370 UniPathway:UPA00128
InterPro:IPR016040 GO:GO:0005783 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0030017 GO:GO:0055120 GO:GO:0071688
GO:GO:0075015 GO:GO:0017085 GO:GO:0019673 GO:GO:0042351
eggNOG:COG1089 KO:K01711 GO:GO:0008446 TIGRFAMs:TIGR01472
EMBL:AM231683 EMBL:AM231684 EMBL:Z68215 PIR:T20182
RefSeq:NP_001076668.1 RefSeq:NP_001076669.1 RefSeq:NP_001076670.1
RefSeq:NP_501563.1 RefSeq:NP_501564.1 UniGene:Cel.13248
ProteinModelPortal:Q18801 SMR:Q18801 STRING:Q18801 PaxDb:Q18801
PRIDE:Q18801 EnsemblMetazoa:C53B4.7b GeneID:177717
KEGG:cel:CELE_C53B4.7 UCSC:C53B4.7a.1 CTD:177717 WormBase:C53B4.7a
WormBase:C53B4.7b WormBase:C53B4.7c WormBase:C53B4.7d
WormBase:C53B4.7e GeneTree:ENSGT00440000033640 InParanoid:Q18801
OMA:IAYNLTD NextBio:898062 GO:GO:0042350 Uniprot:Q18801
Length = 399
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 175/225 (77%), Positives = 199/225 (88%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHV-EGSMKLHYGDMTDSSC 106
+DGSYLAE L+SKGY+VHGIIRRSSSFNT RI+HLYSNP +H + S LHYGDMTDSSC
Sbjct: 61 QDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHYGDMTDSSC 120
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L+++IS+++P EVY+LAAQSHVKVSFD+ EYTAEVDAVGTLRLLDAI C+ +V+FYQ
Sbjct: 121 LIKLISTIEPTEVYHLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRLTEKVRFYQ 180
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYGKV E PQ+E TPFYPRSPYA AK+Y YWIVVNYREAYNMFACNGILFNHESP
Sbjct: 181 ASTSELYGKVQEIPQSEKTPFYPRSPYAVAKMYGYWIVVNYREAYNMFACNGILFNHESP 240
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
RRGE FVTRKITRSVAKISLG E ++LGNL + RDWGHA++YVE
Sbjct: 241 RRGETFVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVE 285
>UNIPROTKB|Q18801 [details] [associations]
symbol:bre-1 "GDP-mannose 4,6 dehydratase 1" species:6239
"Caenorhabditis elegans" [GO:0017085 "response to insecticide"
evidence=IMP] [GO:0008446 "GDP-mannose 4,6-dehydratase activity"
evidence=IDA] [GO:0075015 "formation of infection structure on or
near host" evidence=IMP] InterPro:IPR001509 InterPro:IPR006368
Pfam:PF01370 UniPathway:UPA00128 InterPro:IPR016040 GO:GO:0005783
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0030017
GO:GO:0055120 GO:GO:0071688 GO:GO:0075015 GO:GO:0017085
GO:GO:0019673 GO:GO:0042351 eggNOG:COG1089 KO:K01711 GO:GO:0008446
TIGRFAMs:TIGR01472 EMBL:AM231683 EMBL:AM231684 EMBL:Z68215
PIR:T20182 RefSeq:NP_001076668.1 RefSeq:NP_001076669.1
RefSeq:NP_001076670.1 RefSeq:NP_501563.1 RefSeq:NP_501564.1
UniGene:Cel.13248 ProteinModelPortal:Q18801 SMR:Q18801
STRING:Q18801 PaxDb:Q18801 PRIDE:Q18801 EnsemblMetazoa:C53B4.7b
GeneID:177717 KEGG:cel:CELE_C53B4.7 UCSC:C53B4.7a.1 CTD:177717
WormBase:C53B4.7a WormBase:C53B4.7b WormBase:C53B4.7c
WormBase:C53B4.7d WormBase:C53B4.7e GeneTree:ENSGT00440000033640
InParanoid:Q18801 OMA:IAYNLTD NextBio:898062 GO:GO:0042350
Uniprot:Q18801
Length = 399
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 175/225 (77%), Positives = 199/225 (88%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHV-EGSMKLHYGDMTDSSC 106
+DGSYLAE L+SKGY+VHGIIRRSSSFNT RI+HLYSNP +H + S LHYGDMTDSSC
Sbjct: 61 QDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHYGDMTDSSC 120
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L+++IS+++P EVY+LAAQSHVKVSFD+ EYTAEVDAVGTLRLLDAI C+ +V+FYQ
Sbjct: 121 LIKLISTIEPTEVYHLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRLTEKVRFYQ 180
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYGKV E PQ+E TPFYPRSPYA AK+Y YWIVVNYREAYNMFACNGILFNHESP
Sbjct: 181 ASTSELYGKVQEIPQSEKTPFYPRSPYAVAKMYGYWIVVNYREAYNMFACNGILFNHESP 240
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
RRGE FVTRKITRSVAKISLG E ++LGNL + RDWGHA++YVE
Sbjct: 241 RRGETFVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVE 285
>ZFIN|ZDB-GENE-050419-45 [details] [associations]
symbol:gmds "GDP-mannose 4,6-dehydratase"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0044237 "cellular metabolic process" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0019673 "GDP-mannose metabolic
process" evidence=IEA;ISS] [GO:0050662 "coenzyme binding"
evidence=IEA] [GO:0008446 "GDP-mannose 4,6-dehydratase activity"
evidence=IEA;ISS] [GO:0008417 "fucosyltransferase activity"
evidence=IMP] [GO:0007219 "Notch signaling pathway" evidence=IMP]
[GO:0010842 "retina layer formation" evidence=IMP] [GO:0036065
"fucosylation" evidence=IMP] [GO:0021744 "dorsal motor nucleus of
vagus nerve development" evidence=IMP] [GO:0021564 "vagus nerve
development" evidence=IMP] [GO:0042351 "'de novo' GDP-L-fucose
biosynthetic process" evidence=ISS] [GO:0070401 "NADP+ binding"
evidence=ISS] InterPro:IPR001509 InterPro:IPR006368 Pfam:PF01370
InterPro:IPR016040 ZFIN:ZDB-GENE-050419-45 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0007219 GO:GO:0005622
GO:GO:0010842 GO:GO:0019673 GO:GO:0008417 EMBL:BX510653 KO:K01711
OMA:INPKYFR GO:GO:0008446 TIGRFAMs:TIGR01472
GeneTree:ENSGT00440000033640 CTD:2762 GO:GO:0021744 GO:GO:0021564
EMBL:BX678772 IPI:IPI00650926 RefSeq:NP_956783.3 UniGene:Dr.26662
Ensembl:ENSDART00000103234 GeneID:393461 KEGG:dre:393461
ArrayExpress:F1QPT3 Bgee:F1QPT3 Uniprot:F1QPT3
Length = 377
Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
Identities = 179/246 (72%), Positives = 204/246 (82%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGS-------MKLHYGD 100
+DGSYLAE L++KGYEVHGI+RRSSSFNTGRI+HLY NP +H EGS MKLHYGD
Sbjct: 32 QDGSYLAELLLAKGYEVHGILRRSSSFNTGRIEHLYHNPQTHTEGSIGATKDHMKLHYGD 91
Query: 101 MTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHH 160
+TDS+CLV+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDA+KTC
Sbjct: 92 LTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLTD 151
Query: 161 QVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGIL 220
V+FYQASTSELYGKV E PQ ETTPFYPRSPY AKLYAYWIV+N+REAYN+FA NGIL
Sbjct: 152 TVRFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVINFREAYNLFAVNGIL 211
Query: 221 FNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERI 278
FNHESPRRG NFVTRKI+RSVAKI LG +E LGNLDS RDWGHAKDYVE ++
Sbjct: 212 FNHESPRRGSNFVTRKISRSVAKIHLGQLECFSLGNLDSMRDWGHAKDYVEAMWLMLQQE 271
Query: 279 EWRDFV 284
E DFV
Sbjct: 272 EPVDFV 277
>WB|WBGene00010166 [details] [associations]
symbol:gmd-2 species:6239 "Caenorhabditis elegans"
[GO:0019673 "GDP-mannose metabolic process" evidence=IEA;IDA]
[GO:0008446 "GDP-mannose 4,6-dehydratase activity"
evidence=IEA;IDA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0044237 "cellular metabolic process" evidence=IEA] [GO:0050662
"coenzyme binding" evidence=IEA] [GO:0009058 "biosynthetic process"
evidence=IEA] [GO:0008831 "dTDP-4-dehydrorhamnose reductase
activity" evidence=IEA] [GO:0045226 "extracellular polysaccharide
biosynthetic process" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0042350 "GDP-L-fucose biosynthetic
process" evidence=IDA] InterPro:IPR001509 InterPro:IPR006368
Pfam:PF01370 UniPathway:UPA00128 InterPro:IPR016040 GO:GO:0040007
GO:GO:0018991 GO:GO:0002119 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0010171 GO:GO:0040011 GO:GO:0005622
GO:GO:0019673 GO:GO:0042351 eggNOG:COG1089 KO:K01711 GO:GO:0008446
TIGRFAMs:TIGR01472 HOGENOM:HOG000168003
GeneTree:ENSGT00440000033640 GO:GO:0042350 OMA:DAIRDWG EMBL:Z81553
EMBL:AM231685 PIR:T22798 RefSeq:NP_493106.1 UniGene:Cel.18597
ProteinModelPortal:O45583 SMR:O45583 STRING:O45583 PaxDb:O45583
EnsemblMetazoa:F56H6.5 GeneID:186416 KEGG:cel:CELE_F56H6.5
UCSC:F56H6.5 CTD:186416 WormBase:F56H6.5 InParanoid:O45583
NextBio:931756 Uniprot:O45583
Length = 382
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 172/225 (76%), Positives = 196/225 (87%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHV-EGSMKLHYGDMTDSSC 106
+DGSYLAE L+SKGY+VHGIIRRSSSFNT RI+HLY NP +H S LHYGDMTDSSC
Sbjct: 44 QDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYGNPVTHNGSASFSLHYGDMTDSSC 103
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L+++IS+++P E+Y+LAAQSHVKVSFD+ EYTAEVDAVGTLRLLDAI C+ +V+FYQ
Sbjct: 104 LIKLISTIEPTEIYHLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRLTEKVRFYQ 163
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYGKV E PQ+E TPFYPRSPYA AK+Y YWIVVNYREAY MFACNGILFNHESP
Sbjct: 164 ASTSELYGKVQEIPQSELTPFYPRSPYAVAKMYGYWIVVNYREAYKMFACNGILFNHESP 223
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
RRGE FVTRKITRSVAKISL E+++LGNL + RDWGHAK+YVE
Sbjct: 224 RRGETFVTRKITRSVAKISLRQQEHIELGNLSALRDWGHAKEYVE 268
>UNIPROTKB|O45583 [details] [associations]
symbol:gmd-2 "GDP-mannose 4,6 dehydratase 2" species:6239
"Caenorhabditis elegans" [GO:0019673 "GDP-mannose metabolic
process" evidence=IDA] [GO:0008446 "GDP-mannose 4,6-dehydratase
activity" evidence=IDA] InterPro:IPR001509 InterPro:IPR006368
Pfam:PF01370 UniPathway:UPA00128 InterPro:IPR016040 GO:GO:0040007
GO:GO:0018991 GO:GO:0002119 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0010171 GO:GO:0040011 GO:GO:0005622
GO:GO:0019673 GO:GO:0042351 eggNOG:COG1089 KO:K01711 GO:GO:0008446
TIGRFAMs:TIGR01472 HOGENOM:HOG000168003
GeneTree:ENSGT00440000033640 GO:GO:0042350 OMA:DAIRDWG EMBL:Z81553
EMBL:AM231685 PIR:T22798 RefSeq:NP_493106.1 UniGene:Cel.18597
ProteinModelPortal:O45583 SMR:O45583 STRING:O45583 PaxDb:O45583
EnsemblMetazoa:F56H6.5 GeneID:186416 KEGG:cel:CELE_F56H6.5
UCSC:F56H6.5 CTD:186416 WormBase:F56H6.5 InParanoid:O45583
NextBio:931756 Uniprot:O45583
Length = 382
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 172/225 (76%), Positives = 196/225 (87%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHV-EGSMKLHYGDMTDSSC 106
+DGSYLAE L+SKGY+VHGIIRRSSSFNT RI+HLY NP +H S LHYGDMTDSSC
Sbjct: 44 QDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYGNPVTHNGSASFSLHYGDMTDSSC 103
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L+++IS+++P E+Y+LAAQSHVKVSFD+ EYTAEVDAVGTLRLLDAI C+ +V+FYQ
Sbjct: 104 LIKLISTIEPTEIYHLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRLTEKVRFYQ 163
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYGKV E PQ+E TPFYPRSPYA AK+Y YWIVVNYREAY MFACNGILFNHESP
Sbjct: 164 ASTSELYGKVQEIPQSELTPFYPRSPYAVAKMYGYWIVVNYREAYKMFACNGILFNHESP 223
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
RRGE FVTRKITRSVAKISL E+++LGNL + RDWGHAK+YVE
Sbjct: 224 RRGETFVTRKITRSVAKISLRQQEHIELGNLSALRDWGHAKEYVE 268
>UNIPROTKB|Q06952 [details] [associations]
symbol:rfbD "Probable GDP-mannose 4,6-dehydratase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008446 "GDP-mannose 4,6-dehydratase activity" evidence=ISS]
[GO:0009103 "lipopolysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR006368 Pfam:PF01370
UniPathway:UPA00128 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0009103 GO:GO:0019673
GO:GO:0042351 EMBL:X59554 PIR:S28470 RefSeq:NP_229900.1
ProteinModelPortal:Q06952 SMR:Q06952 DNASU:2614706 GeneID:2614706
KEGG:vch:VC0243 PATRIC:20079530 eggNOG:COG1089 KO:K01711
OMA:INPKYFR ProtClustDB:CLSK793536 BioCyc:MetaCyc:MONOMER-13574
GO:GO:0008446 TIGRFAMs:TIGR01472 Uniprot:Q06952
Length = 373
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 161/240 (67%), Positives = 190/240 (79%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEG-SMKLHYGDMTDSSC 106
+DGSYLAEFL+ KGYEVHGI RRSS FNT R+ HLY +P H E + KLHYGD+TDSS
Sbjct: 14 QDGSYLAEFLLEKGYEVHGIKRRSSLFNTQRVDHLYKDP--HEEDVNFKLHYGDLTDSSN 71
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L +I++ VQP EVYNL AQSHV VSF EYTA+VDA+GTLRLL+AI+ + KFYQ
Sbjct: 72 LTRILAEVQPDEVYNLGAQSHVAVSFQSPEYTADVDAIGTLRLLEAIRFLGLTKKTKFYQ 131
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYG V E PQ ETTPFYPRSPYA AK+YAYWI +NYRE+Y ++ACNGILFNHESP
Sbjct: 132 ASTSELYGLVQEIPQKETTPFYPRSPYAVAKMYAYWITINYRESYGIYACNGILFNHESP 191
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RRGE FVTRKITR +A I+ GL + + +GNLD+ RDWGHAKDYV++ ++ E RDFV
Sbjct: 192 RRGETFVTRKITRGMANIAQGLEKCLFMGNLDALRDWGHAKDYVKMQWMMLQQDEPRDFV 251
>TIGR_CMR|VC_0243 [details] [associations]
symbol:VC_0243 "GDP-mannose 4,6-dehydratase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008446 "GDP-mannose
4,6-dehydratase activity" evidence=ISS] [GO:0009103
"lipopolysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR006368 Pfam:PF01370
UniPathway:UPA00128 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0009103 GO:GO:0019673
GO:GO:0042351 EMBL:X59554 PIR:S28470 RefSeq:NP_229900.1
ProteinModelPortal:Q06952 SMR:Q06952 DNASU:2614706 GeneID:2614706
KEGG:vch:VC0243 PATRIC:20079530 eggNOG:COG1089 KO:K01711
OMA:INPKYFR ProtClustDB:CLSK793536 BioCyc:MetaCyc:MONOMER-13574
GO:GO:0008446 TIGRFAMs:TIGR01472 Uniprot:Q06952
Length = 373
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 161/240 (67%), Positives = 190/240 (79%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEG-SMKLHYGDMTDSSC 106
+DGSYLAEFL+ KGYEVHGI RRSS FNT R+ HLY +P H E + KLHYGD+TDSS
Sbjct: 14 QDGSYLAEFLLEKGYEVHGIKRRSSLFNTQRVDHLYKDP--HEEDVNFKLHYGDLTDSSN 71
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L +I++ VQP EVYNL AQSHV VSF EYTA+VDA+GTLRLL+AI+ + KFYQ
Sbjct: 72 LTRILAEVQPDEVYNLGAQSHVAVSFQSPEYTADVDAIGTLRLLEAIRFLGLTKKTKFYQ 131
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ASTSELYG V E PQ ETTPFYPRSPYA AK+YAYWI +NYRE+Y ++ACNGILFNHESP
Sbjct: 132 ASTSELYGLVQEIPQKETTPFYPRSPYAVAKMYAYWITINYRESYGIYACNGILFNHESP 191
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RRGE FVTRKITR +A I+ GL + + +GNLD+ RDWGHAKDYV++ ++ E RDFV
Sbjct: 192 RRGETFVTRKITRGMANIAQGLEKCLFMGNLDALRDWGHAKDYVKMQWMMLQQDEPRDFV 251
>TIGR_CMR|GSU_0626 [details] [associations]
symbol:GSU_0626 "GDP-mannose 4,6-dehydratase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008446
"GDP-mannose 4,6-dehydratase activity" evidence=ISS] [GO:0009103
"lipopolysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR006368 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0019673
KO:K01711 GO:GO:0008446 TIGRFAMs:TIGR01472 HOGENOM:HOG000168003
RefSeq:NP_951684.1 ProteinModelPortal:Q74FI2 SMR:Q74FI2
GeneID:2685242 KEGG:gsu:GSU0626 PATRIC:22024003 OMA:YACAKAY
ProtClustDB:CLSK827959 BioCyc:GSUL243231:GH27-625-MONOMER
Uniprot:Q74FI2
Length = 349
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 154/239 (64%), Positives = 188/239 (78%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYLAE L+ KGYEVHG+IRRSSSFNTGRI HLY +P + + LHYGD+ D+S +
Sbjct: 12 QDGSYLAELLLGKGYEVHGVIRRSSSFNTGRIDHLYRDP-HEPDVRLFLHYGDLNDASSI 70
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
+++ V+P E+YNL AQSHV+VSFD+ EYT E+DA+GT+RLL+ I+ + +FYQA
Sbjct: 71 NRVLREVRPDEIYNLGAQSHVRVSFDVPEYTGEIDALGTVRLLEGIRETGLN--TRFYQA 128
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
S+SELYGKVVETPQ ETTPFYPRSPYACAK YAY+I VNYRE+Y M+ACNGILFNHESPR
Sbjct: 129 SSSELYGKVVETPQKETTPFYPRSPYACAKAYAYYITVNYRESYGMYACNGILFNHESPR 188
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RGE FVTRKITR+ +I GL + + LGNLD+KRDWG A DYVE ++ E DFV
Sbjct: 189 RGETFVTRKITRAAGRIKTGLQDRLYLGNLDAKRDWGFAGDYVEAMWLMLQQQEADDFV 247
>UNIPROTKB|P0AC88 [details] [associations]
symbol:gmd "GDP-mannose 4,6-dehydratase" species:83333
"Escherichia coli K-12" [GO:0050662 "coenzyme binding"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0019673 "GDP-mannose metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042351 "'de novo' GDP-L-fucose biosynthetic
process" evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0009103 "lipopolysaccharide biosynthetic process" evidence=IEA]
[GO:0008446 "GDP-mannose 4,6-dehydratase activity" evidence=IEA]
[GO:0009242 "colanic acid biosynthetic process" evidence=IEA]
InterPro:IPR001509 InterPro:IPR006368 Pfam:PF01370
UniPathway:UPA00128 UniPathway:UPA00980 InterPro:IPR016040
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0005622 GO:GO:0009103 GO:GO:0019673 GO:GO:0042351 EMBL:U38473
GO:GO:0009242 eggNOG:COG1089 KO:K01711 OMA:INPKYFR GO:GO:0008446
TIGRFAMs:TIGR01472 PIR:D64971 RefSeq:NP_416557.1 RefSeq:YP_490295.1
PDB:1DB3 PDBsum:1DB3 ProteinModelPortal:P0AC88 SMR:P0AC88
DIP:DIP-48216N IntAct:P0AC88 EnsemblBacteria:EBESCT00000004343
EnsemblBacteria:EBESCT00000015616 GeneID:12930696 GeneID:946562
KEGG:ecj:Y75_p2016 KEGG:eco:b2053 PATRIC:32119439 EchoBASE:EB1735
EcoGene:EG11787 HOGENOM:HOG000168003 ProtClustDB:CLSK880276
BioCyc:EcoCyc:GDPMANDEHYDRA-MONOMER
BioCyc:ECOL316407:JW2038-MONOMER
BioCyc:MetaCyc:GDPMANDEHYDRA-MONOMER EvolutionaryTrace:P0AC88
Genevestigator:P0AC88 Uniprot:P0AC88
Length = 373
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 155/239 (64%), Positives = 186/239 (77%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYLAEFL+ KGYEVHGI RR+SSFNT R+ H+Y +P + LHYGD++D+S L
Sbjct: 13 QDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHT-CNPKFHLHYGDLSDTSNL 71
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
+I+ VQP EVYNL A SHV VSF+ EYTA+VDA+GTLRLL+AI+ + +FYQA
Sbjct: 72 TRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQA 131
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSELYG V E PQ ETTPFYPRSPYA AKLYAYWI VNYRE+Y M+ACNGILFNHESPR
Sbjct: 132 STSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPR 191
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RGE FVTRKITR++A I+ GL + LGN+DS RDWGHAKDYV++ ++ + DFV
Sbjct: 192 RGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFV 250
>TIGR_CMR|CPS_4199 [details] [associations]
symbol:CPS_4199 "GDP-mannose 4,6-dehydratase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000271
"polysaccharide biosynthetic process" evidence=ISS] [GO:0008446
"GDP-mannose 4,6-dehydratase activity" evidence=ISS]
InterPro:IPR001509 InterPro:IPR006368 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0019673
eggNOG:COG1089 KO:K01711 OMA:INPKYFR GO:GO:0008446
TIGRFAMs:TIGR01472 HOGENOM:HOG000168003 RefSeq:YP_270850.1
ProteinModelPortal:Q47WH2 SMR:Q47WH2 STRING:Q47WH2 GeneID:3519434
KEGG:cps:CPS_4199 PATRIC:21471261 ProtClustDB:CLSK589180
BioCyc:CPSY167879:GI48-4209-MONOMER Uniprot:Q47WH2
Length = 374
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 156/227 (68%), Positives = 184/227 (81%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMK--LHYGDMTDSS 105
+DGSYLAE L+ KGYEVHGI RRSSS NT RI H+Y + +H E + K LHYGD+TDSS
Sbjct: 15 QDGSYLAELLLEKGYEVHGIKRRSSSLNTERIDHIYQD--NH-EKNQKFFLHYGDLTDSS 71
Query: 106 CLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFY 165
L +I+ VQP EVYNL AQSHV VSF+ EYTA+VDA+GTLRLL+AI+ + KFY
Sbjct: 72 NLTRILKDVQPDEVYNLGAQSHVAVSFECPEYTADVDAIGTLRLLEAIRFLGLEKKTKFY 131
Query: 166 QASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHES 225
QASTSELYG+V E PQ+ETTPF+PRSPYA AK+YAYWIVVNYRE+Y M+ACNGILFNHES
Sbjct: 132 QASTSELYGEVQEIPQSETTPFHPRSPYAVAKMYAYWIVVNYRESYGMYACNGILFNHES 191
Query: 226 PRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEV 272
PRRGE FVTRKITR++A I+ GL + LGN+D+ RDWGHAKDYV +
Sbjct: 192 PRRGETFVTRKITRAIANIAQGLESCLYLGNMDALRDWGHAKDYVRM 238
>DICTYBASE|DDB_G0284553 [details] [associations]
symbol:gmd "GDP-mannose dehydratase" species:44689
"Dictyostelium discoideum" [GO:0050662 "coenzyme binding"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0019673 "GDP-mannose metabolic process"
evidence=IEA] [GO:0008446 "GDP-mannose 4,6-dehydratase activity"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0042351 "'de novo' GDP-L-fucose biosynthetic
process" evidence=IEA;ISS] [GO:0016829 "lyase activity"
evidence=IEA] InterPro:IPR001509 InterPro:IPR006368 Pfam:PF01370
UniPathway:UPA00128 InterPro:IPR016040 dictyBase:DDB_G0284553
GenomeReviews:CM000153_GR GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0005622 EMBL:AAFI02000066 GO:GO:0019673
GO:GO:0042351 eggNOG:COG1089 OMA:INPKYFR GO:GO:0008446
TIGRFAMs:TIGR01472 RefSeq:XP_001134543.1 ProteinModelPortal:Q1ZXF7
SMR:Q1ZXF7 STRING:Q1ZXF7 EnsemblProtists:DDB0231676 GeneID:8624624
KEGG:ddi:DDB_G0284553 ProtClustDB:CLSZ2432853 Uniprot:Q1ZXF7
Length = 356
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 154/226 (68%), Positives = 181/226 (80%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRS-SSFNTGRIQHLYSNPASHVEG-SMKLHYGDMTDSS 105
+DGSYL EFLISKGY VHGII++ FNT ++++Y E S+ LHYGD+TD+S
Sbjct: 16 QDGSYLTEFLISKGYYVHGIIQKIFHHFNT-IVKNIYIKIDMLKEKESLTLHYGDLTDAS 74
Query: 106 CLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFY 165
L I+S V P E+YNL AQSHVKVSFDMSEYT +VD +G LRLLDAI++C +VK+Y
Sbjct: 75 NLHSIVSKVNPTEIYNLGAQSHVKVSFDMSEYTGDVDGLGCLRLLDAIRSCGMEKKVKYY 134
Query: 166 QASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHES 225
QASTSELYGKV E PQ+ETTPFYPRSPYA AK YAYWIVVNYREAY+M+ACNGILFNHES
Sbjct: 135 QASTSELYGKVQEIPQSETTPFYPRSPYAVAKQYAYWIVVNYREAYDMYACNGILFNHES 194
Query: 226 PRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
PRRG FVTRKITR VA I+ G E + LGN+++KRDWGHA+DYVE
Sbjct: 195 PRRGPTFVTRKITRFVAGIACGRDEILYLGNINAKRDWGHARDYVE 240
>UNIPROTKB|P72586 [details] [associations]
symbol:rfbD "GDP-D-mannose dehydratase" species:1111708
"Synechocystis sp. PCC 6803 substr. Kazusa" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001509 InterPro:IPR006368
Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0005622 EMBL:BA000022 GenomeReviews:BA000022_GR
GO:GO:0019673 eggNOG:COG1089 KO:K01711 OMA:INPKYFR GO:GO:0008446
TIGRFAMs:TIGR01472 HOGENOM:HOG000168003 HSSP:P32054 PIR:S74433
RefSeq:NP_439905.1 RefSeq:YP_005649960.1 ProteinModelPortal:P72586
SMR:P72586 IntAct:P72586 STRING:P72586 GeneID:12255298
GeneID:951882 KEGG:syn:sll1212 KEGG:syy:SYNGTS_0007 PATRIC:23836866
ProtClustDB:CLSK892430 Uniprot:P72586
Length = 362
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 144/225 (64%), Positives = 182/225 (80%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYL+E L+ KGY+VHGIIRR+S+FNT RI HLY +P +E ++LHYGD+TD + L
Sbjct: 15 QDGSYLSELLLEKGYQVHGIIRRTSTFNTDRIDHLYVDPHD-LEAKLRLHYGDLTDGTTL 73
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHH--QVKFY 165
+I+ V+P E+YNL AQSHV+VSFD EYT + A+GTLRLL+AI+ + QV+FY
Sbjct: 74 RRILEDVKPTEIYNLGAQSHVRVSFDSPEYTVDSVAMGTLRLLEAIRDYQHRTGIQVRFY 133
Query: 166 QASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHES 225
QA +SE++GKV E PQ ETTPFYPRSPYACAK+Y +W VNYRE+Y++FACNGILFNHES
Sbjct: 134 QAGSSEMFGKVQEIPQKETTPFYPRSPYACAKVYGHWQTVNYRESYDLFACNGILFNHES 193
Query: 226 PRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYV 270
PRRGE FVTRKITR++A+I G + + LGN+DSKRDWG+AKDYV
Sbjct: 194 PRRGETFVTRKITRAIARIVAGTQKKLYLGNIDSKRDWGYAKDYV 238
>TIGR_CMR|CBU_0689 [details] [associations]
symbol:CBU_0689 "GDP-mannose 4,6-dehydratase"
species:227377 "Coxiella burnetii RSA 493" [GO:0008446 "GDP-mannose
4,6-dehydratase activity" evidence=ISS] [GO:0009103
"lipopolysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR006368 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0005622 GenomeReviews:AE016828_GR GO:GO:0019673 GO:GO:0008446
TIGRFAMs:TIGR01472 HOGENOM:HOG000168003 HSSP:P93031 EMBL:AF387640
ProteinModelPortal:Q93N54 SMR:Q93N54 PRIDE:Q93N54 PATRIC:17930061
ProtClustDB:CLSK914242 BioCyc:CBUR227377:GJ7S-687-MONOMER
Uniprot:Q93N54
Length = 348
Score = 713 (256.0 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 135/225 (60%), Positives = 171/225 (76%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGS-MKLHYGDMTDSSC 106
+DGSYLAE L+ K YEVHG+IRRSSSFNT R+ +Y H E + + LHYGD+TD
Sbjct: 13 QDGSYLAELLLRKDYEVHGMIRRSSSFNTERLSDIYEE--KHKENARLFLHYGDITDGLV 70
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L ++I ++P EVYNLAAQSHV+VSFD+ YT E +GTL +L+AIK +++FYQ
Sbjct: 71 LNKLIHEIKPHEVYNLAAQSHVRVSFDIPVYTMETIGLGTLNILEAIKNADNAKEIRFYQ 130
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
AS+SE+YG V PQTE+TPF PRSPYACAK++A++ +NYRE+Y + A GILFNHESP
Sbjct: 131 ASSSEMYGDVKSVPQTESTPFNPRSPYACAKVFAHYQTINYRESYGLHASTGILFNHESP 190
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
RRGE FVTRKIT +AKI GL + + LGNL++KRDWG+AKDYVE
Sbjct: 191 RRGETFVTRKITSGIAKILAGLEKKIYLGNLEAKRDWGYAKDYVE 235
Score = 41 (19.5 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 263 WGHAKDYVEVS-SFERIEWRDFV 284
W K+ +E S + + WRDFV
Sbjct: 257 WS-VKELLEYSFNLVNLNWRDFV 278
>TAIR|locus:2080933 [details] [associations]
symbol:MUR1 "MURUS 1" species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=ISM]
[GO:0008446 "GDP-mannose 4,6-dehydratase activity"
evidence=IEA;ISS;IDA] [GO:0019673 "GDP-mannose metabolic process"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
[GO:0009826 "unidimensional cell growth" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0006007 "glucose catabolic process"
evidence=RCA] [GO:0042351 "'de novo' GDP-L-fucose biosynthetic
process" evidence=IMP] InterPro:IPR001509 InterPro:IPR006368
Pfam:PF01370 UniPathway:UPA00128 InterPro:IPR016040 GO:GO:0005525
GO:GO:0005829 EMBL:CP002686 GenomeReviews:BA000014_GR
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009826 EMBL:AL132980
GO:GO:0019673 GO:GO:0042351 eggNOG:COG1089 KO:K01711 GO:GO:0008446
TIGRFAMs:TIGR01472 HOGENOM:HOG000168003 ProtClustDB:PLN02653
EMBL:U81805 EMBL:BT025710 EMBL:AY084574 IPI:IPI00519785 PIR:T45747
RefSeq:NP_190685.2 UniGene:At.23910 PDB:1N7G PDB:1N7H PDBsum:1N7G
PDBsum:1N7H ProteinModelPortal:P93031 SMR:P93031 STRING:P93031
PaxDb:P93031 PRIDE:P93031 EnsemblPlants:AT3G51160.1 GeneID:824280
KEGG:ath:AT3G51160 GeneFarm:4170 TAIR:At3g51160 InParanoid:P93031
OMA:DAIRDWG PhylomeDB:P93031 BioCyc:MetaCyc:AT3G51160-MONOMER
EvolutionaryTrace:P93031 Genevestigator:P93031 GermOnline:AT3G51160
Uniprot:P93031
Length = 373
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 139/226 (61%), Positives = 174/226 (76%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYL EFL+ KGYEVHG+IRRSS+FNT RI H+Y +P + + MKLHY D+TD+S L
Sbjct: 39 QDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSL 98
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK--TCKFHHQVKFY 165
+ I ++P EVYNLAAQSHV VSF++ +YTA+V A G LRLL+A++ T VK+Y
Sbjct: 99 RRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYY 158
Query: 166 QASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHES 225
QA +SE++G PQ+ETTPF+PRSPYA +K A+W VNYREAY +FACNGILFNHES
Sbjct: 159 QAGSSEMFGST-PPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHES 217
Query: 226 PRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
PRRGENFVTRKITR++ +I +GL + LGNL + RDWG A DYVE
Sbjct: 218 PRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVE 263
>TAIR|locus:2155036 [details] [associations]
symbol:GMD1 ""GDP-D-mannose 4,6-dehydratase 1""
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008446 "GDP-mannose
4,6-dehydratase activity" evidence=IEA;ISS] [GO:0009225
"nucleotide-sugar metabolic process" evidence=ISS] [GO:0019673
"GDP-mannose metabolic process" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0050662 "coenzyme binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001509 InterPro:IPR006368 Pfam:PF01370
UniPathway:UPA00128 InterPro:IPR016040 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0005622 EMBL:AB022211 GO:GO:0019673
GO:GO:0042351 eggNOG:COG1089 KO:K01711 OMA:INPKYFR GO:GO:0008446
TIGRFAMs:TIGR01472 HOGENOM:HOG000168003 EMBL:AF195140
IPI:IPI00517362 RefSeq:NP_201429.1 UniGene:At.46822
ProteinModelPortal:Q9SNY3 SMR:Q9SNY3 IntAct:Q9SNY3 STRING:Q9SNY3
PaxDb:Q9SNY3 PRIDE:Q9SNY3 EnsemblPlants:AT5G66280.1 GeneID:836760
KEGG:ath:AT5G66280 TAIR:At5g66280 InParanoid:Q9SNY3
PhylomeDB:Q9SNY3 ProtClustDB:PLN02653 Genevestigator:Q9SNY3
GermOnline:AT5G66280 Uniprot:Q9SNY3
Length = 361
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 133/226 (58%), Positives = 176/226 (77%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYL EFL+ KGYEVHG+IRRSS+FNT R+ H+Y +P + + MKLHYGD++D+S L
Sbjct: 27 QDGSYLTEFLLEKGYEVHGLIRRSSNFNTQRLNHIYVDPHNVNKALMKLHYGDLSDASSL 86
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHH--QVKFY 165
+ + ++P EVYNLAAQSHV VSF++ +YTA+V A G LRLL+A+++ + +K+Y
Sbjct: 87 RRWLDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHNIDNGRAIKYY 146
Query: 166 QASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHES 225
QA +SE++G PQ+ETTPF+PRSPYA +K A+W VNYREAY ++ACNGILFNHES
Sbjct: 147 QAGSSEMFGST-PPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLYACNGILFNHES 205
Query: 226 PRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
PRRGENFVTRKITR++ +I +GL + LGN+ + RDWG A DYVE
Sbjct: 206 PRRGENFVTRKITRALGRIKVGLQTKLFLGNIQASRDWGFAGDYVE 251
>UNIPROTKB|P71790 [details] [associations]
symbol:gmdA "GDP-D-mannose dehydratase gmdA (GDP-mannose
4,6 dehydratase) (GMD)" species:83332 "Mycobacterium tuberculosis
H37Rv" [GO:0005886 "plasma membrane" evidence=IDA] [GO:0071456
"cellular response to hypoxia" evidence=IEP] InterPro:IPR001509
InterPro:IPR006368 Pfam:PF01370 InterPro:IPR016040 GO:GO:0005886
GenomeReviews:AL123456_GR GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 EMBL:BX842576 GO:GO:0071456 GO:GO:0005622
GO:GO:0019673 KO:K01711 GO:GO:0008446 TIGRFAMs:TIGR01472
HOGENOM:HOG000168003 OMA:DAIRDWG HSSP:P32054 EMBL:CP003248
PIR:B70714 RefSeq:NP_216027.1 RefSeq:YP_006514898.1
ProteinModelPortal:P71790 SMR:P71790 PRIDE:P71790
EnsemblBacteria:EBMYCT00000003919 GeneID:13320108 GeneID:886529
KEGG:mtu:Rv1511 KEGG:mtv:RVBD_1511 PATRIC:18151910
TubercuList:Rv1511 ProtClustDB:CLSK791213 Uniprot:P71790
Length = 340
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 134/225 (59%), Positives = 174/225 (77%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGS-MKLHYGDMTDSSC 106
+DGSYLAE L++KGYEVHG+IRR+S+FNT RI HLY +P H G+ + LHYGD+ D +
Sbjct: 12 QDGSYLAELLLAKGYEVHGLIRRASTFNTSRIDHLYVDP--HQPGARLFLHYGDLIDGTR 69
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
LV ++S+++P EVYNLAAQSHV+VSFD +T + +G++RLL+A++ + H +FYQ
Sbjct: 70 LVTLLSTIEPDEVYNLAAQSHVRVSFDEPVHTGDTTGMGSMRLLEAVRLSRVH--CRFYQ 127
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
AS+SE++G PQ E TPFYPRSPY AK+Y+YW NYREAY +FA NGILFNHESP
Sbjct: 128 ASSSEMFG-ASPPPQNELTPFYPRSPYGAAKVYSYWATRNYREAYGLFAVNGILFNHESP 186
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
RRGE FVTRKITR+VA+I G+ V +GNLD+ RDWG+A +YVE
Sbjct: 187 RRGETFVTRKITRAVARIKAGIQSEVYMGNLDAVRDWGYAPEYVE 231
>GENEDB_PFALCIPARUM|PF08_0077 [details] [associations]
symbol:PF08_0077 "GDP-mannose 4,6-dehydratase,
putative" species:5833 "Plasmodium falciparum" [GO:0006004 "fucose
metabolic process" evidence=ISS] InterPro:IPR001509
InterPro:IPR006368 Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0005622 GO:GO:0006004
GO:GO:0019673 KO:K01711 GO:GO:0008446 TIGRFAMs:TIGR01472
HOGENOM:HOG000168003 OMA:DAIRDWG ProtClustDB:CLSZ2432853
EMBL:AL844507 RefSeq:XP_001349387.1 HSSP:P32054
ProteinModelPortal:Q8IAX4 SMR:Q8IAX4 EnsemblProtists:PF08_0077:mRNA
GeneID:2655276 KEGG:pfa:PF08_0077 EuPathDB:PlasmoDB:PF3D7_0813800
Uniprot:Q8IAX4
Length = 357
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 141/239 (58%), Positives = 172/239 (71%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYL+E L+ K Y VHG+IRR SSFNT RI H++ + LHYGD+ DSS +
Sbjct: 12 QDGSYLSELLLEKNYHVHGVIRRCSSFNTKRIDHIFDK--------LILHYGDLLDSSNI 63
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
+I ++P E+YNLAAQSHVKVSF+M EYT E A+GTLR+L+ I+ K + +KFY A
Sbjct: 64 CSLICEIKPNEIYNLAAQSHVKVSFEMPEYTTEATALGTLRILEGIRISKVKN-IKFYNA 122
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSEL+GKV Q E TPFYP SPYA AKLYA++I +NYRE+YNMF NGILFNHESPR
Sbjct: 123 STSELFGKVQCPIQNENTPFYPVSPYAIAKLYAHYITINYRESYNMFCINGILFNHESPR 182
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RGE FVTRKITR +AKI L + LGN+D+ RDWGHAKDYV ++ E DFV
Sbjct: 183 RGETFVTRKITRGIAKIQKKLETSIILGNIDTYRDWGHAKDYVYAMYLMLQQNEADDFV 241
>UNIPROTKB|Q8IAX4 [details] [associations]
symbol:PF08_0077 "GDP-mannose 4,6-dehydratase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0006004 "fucose
metabolic process" evidence=ISS] InterPro:IPR001509
InterPro:IPR006368 Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0005622 GO:GO:0006004
GO:GO:0019673 KO:K01711 GO:GO:0008446 TIGRFAMs:TIGR01472
HOGENOM:HOG000168003 OMA:DAIRDWG ProtClustDB:CLSZ2432853
EMBL:AL844507 RefSeq:XP_001349387.1 HSSP:P32054
ProteinModelPortal:Q8IAX4 SMR:Q8IAX4 EnsemblProtists:PF08_0077:mRNA
GeneID:2655276 KEGG:pfa:PF08_0077 EuPathDB:PlasmoDB:PF3D7_0813800
Uniprot:Q8IAX4
Length = 357
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 141/239 (58%), Positives = 172/239 (71%)
Query: 48 EDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
+DGSYL+E L+ K Y VHG+IRR SSFNT RI H++ + LHYGD+ DSS +
Sbjct: 12 QDGSYLSELLLEKNYHVHGVIRRCSSFNTKRIDHIFDK--------LILHYGDLLDSSNI 63
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
+I ++P E+YNLAAQSHVKVSF+M EYT E A+GTLR+L+ I+ K + +KFY A
Sbjct: 64 CSLICEIKPNEIYNLAAQSHVKVSFEMPEYTTEATALGTLRILEGIRISKVKN-IKFYNA 122
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
STSEL+GKV Q E TPFYP SPYA AKLYA++I +NYRE+YNMF NGILFNHESPR
Sbjct: 123 STSELFGKVQCPIQNENTPFYPVSPYAIAKLYAHYITINYRESYNMFCINGILFNHESPR 182
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS--SFERIEWRDFV 284
RGE FVTRKITR +AKI L + LGN+D+ RDWGHAKDYV ++ E DFV
Sbjct: 183 RGETFVTRKITRGIAKIQKKLETSIILGNIDTYRDWGHAKDYVYAMYLMLQQNEADDFV 241
>UNIPROTKB|F1MBF1 [details] [associations]
symbol:GMDS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070401 "NADP+ binding" evidence=IEA] [GO:0019673
"GDP-mannose metabolic process" evidence=IEA] [GO:0008446
"GDP-mannose 4,6-dehydratase activity" evidence=IEA]
InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040
Gene3D:3.40.50.720 GO:GO:0070401 GO:GO:0019673 GO:GO:0008446
GeneTree:ENSGT00440000033640 EMBL:DAAA02055917 EMBL:DAAA02055918
EMBL:DAAA02055919 EMBL:DAAA02055920 EMBL:DAAA02055921
EMBL:DAAA02055922 IPI:IPI00695235 Ensembl:ENSBTAT00000015992
OMA:XELVSEM ArrayExpress:F1MBF1 Uniprot:F1MBF1
Length = 142
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 113/142 (79%), Positives = 124/142 (87%)
Query: 130 VSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQASTSELYGKVVETPQTETTPFYP 189
+SFD++EYTA+VD VGTLRLLDA+KTC V+FYQASTSELYGKV E PQ ETTPFYP
Sbjct: 1 ISFDLAEYTADVDGVGTLRLLDAVKTCGLISSVRFYQASTSELYGKVQEIPQKETTPFYP 60
Query: 190 RSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGLM 249
RSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPRRG NFVTRKI+RSVAKI LG +
Sbjct: 61 RSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIHLGQL 120
Query: 250 EYVQLGNLDSKRDWGHAKDYVE 271
E LGNLD+KRDWGHAKDYVE
Sbjct: 121 ECFSLGNLDAKRDWGHAKDYVE 142
>TIGR_CMR|CJE_1611 [details] [associations]
symbol:CJE_1611 "GDP-mannose 4,6-dehydratase"
species:195099 "Campylobacter jejuni RM1221" [GO:0000271
"polysaccharide biosynthetic process" evidence=ISS] [GO:0008446
"GDP-mannose 4,6-dehydratase activity" evidence=ISS]
InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040 eggNOG:COG0451
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0044237 KO:K01711 GO:GO:0008446
HOGENOM:HOG000167992 RefSeq:YP_179592.1 ProteinModelPortal:Q5HSZ3
STRING:Q5HSZ3 GeneID:3232239 KEGG:cjr:CJE1611 PATRIC:20045019
OMA:RISIFYA ProtClustDB:CLSK931088
BioCyc:CJEJ195099:GJC0-1641-MONOMER Uniprot:Q5HSZ3
Length = 343
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 69/226 (30%), Positives = 119/226 (52%)
Query: 50 GSYLAEFLISK-GYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
GS +A+FL++ YEV G++R + I HL + + + + + Y D+ D S L
Sbjct: 15 GSQMADFLLANTDYEVIGMMRWQEPMDN--IYHL--SDRINKKDRISIFYADLNDYSSLQ 70
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFH--HQVKFYQ 166
++ S +P +++LAAQS+ K SFD+ T + + +GT +L+ I+ K + +
Sbjct: 71 KLFESQRPDVIFHLAAQSYPKTSFDIPIETLQTNIIGTANILENIRILKAKDGYDPVVHV 130
Query: 167 ASTSELYGKV-VETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHES 225
S+SE+YG+ V E T F+ SPY+ +K+ ++ Y EAYN+ + H
Sbjct: 131 CSSSEVYGRAKVGIKLNEDTTFHGASPYSISKIGTDYLGRFYGEAYNIRTFVTRMGTHSG 190
Query: 226 PRRGENFVTRKITRSVAKISLGLME-YVQLGNLDSKRDWGHAKDYV 270
PRR + F + + +A I G E +++GNL S R + A+D +
Sbjct: 191 PRRSDVFFESTVAKQIALIETGYQEPVIKVGNLSSVRTFQDARDAI 236
>UNIPROTKB|Q6T1X6 [details] [associations]
symbol:rmd "GDP-6-deoxy-D-mannose reductase" species:143495
"Aneurinibacillus thermoaerophilus" [GO:0033705
"GDP-4-dehydro-6-deoxy-D-mannose reductase activity" evidence=IDA]
[GO:0055114 "oxidation-reduction process" evidence=IDA]
InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0044237 EMBL:AY442352
PDB:2PK3 PDBsum:2PK3 ProteinModelPortal:Q6T1X6 SMR:Q6T1X6
BRENDA:1.1.1.281 EvolutionaryTrace:Q6T1X6 GO:GO:0033705
Uniprot:Q6T1X6
Length = 309
Score = 219 (82.2 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 66/225 (29%), Positives = 110/225 (48%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G YLA L + EV G R N ++ P +VE + L D+ DS + +
Sbjct: 13 GKYLANHLTEQNVEVFGTSRN----NEAKL------P--NVE-MISL---DIMDSQRVKK 56
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
+IS ++P +++LAA+S VK S+ + T + GTL +LDA++ + +
Sbjct: 57 VISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNL--DCRILTIGS 114
Query: 170 SELYGKVV--ETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
SE YG ++ E+P +E P SPY +K + Y +AY M + FNH P
Sbjct: 115 SEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPG 174
Query: 228 RGENFVTRKITRSVAKISLGLME-YVQLGNLDSKRDWGHAKDYVE 271
+ FVT+ + + I + E +++GNL++ RD+ +D V+
Sbjct: 175 QSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQ 219
>TIGR_CMR|CJE_1513 [details] [associations]
symbol:CJE_1513 "NAD-dependent epimerase/dehydratase
family protein" species:195099 "Campylobacter jejuni RM1221"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0009225
"nucleotide-sugar metabolic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0009225 EMBL:CP000025 GenomeReviews:CP000025_GR
HOGENOM:HOG000167994 GO:GO:0008460 PANTHER:PTHR10366:SF41
RefSeq:YP_179498.1 ProteinModelPortal:Q5HT87 STRING:Q5HT87
GeneID:3232144 KEGG:cjr:CJE1513 PATRIC:20044818 OMA:EVFRLCC
ProtClustDB:CLSK864552 BioCyc:CJEJ195099:GJC0-1541-MONOMER
Uniprot:Q5HT87
Length = 323
Score = 215 (80.7 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 64/222 (28%), Positives = 107/222 (48%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS+L E L+ KG++V + + +SFN HL +P M++ GD+ DS +
Sbjct: 14 GSHLCESLVKKGFKVRAL-SQYNSFNFWG--HLEKSPFLK---DMEVVSGDLRDSFFCEK 67
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
I ++ +++L A + S+ + + + GTL +L+A K + H F ST
Sbjct: 68 ITKNIDA--IFHLGALIAIPYSYTAPQSYVDTNVNGTLNMLEAAKKNEISH---FIHTST 122
Query: 170 SELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRRG 229
SE+YG P E P P+SPY+ +K+ A + ++Y ++N+ FN PR+
Sbjct: 123 SEVYGTAFYVPIDEKHPLQPQSPYSASKIAADMMALSYYNSFNLNVNIARPFNTYGPRQS 182
Query: 230 ENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
+ I + +I G E ++LG+L KRD D E
Sbjct: 183 ARAIIPTI---ITQILSGAKE-IKLGDLSPKRDLNFVLDTCE 220
>UNIPROTKB|B0RVL0 [details] [associations]
symbol:rfbB "dTDP-glucose 4,6-dehydratase" species:509169
"Xanthomonas campestris pv. campestris str. B100" [GO:0008460
"dTDP-glucose 4,6-dehydratase activity" evidence=ISS] [GO:0009103
"lipopolysaccharide biosynthetic process" evidence=ISS] [GO:0045226
"extracellular polysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
UniPathway:UPA00124 UniPathway:UPA00281 InterPro:IPR016040
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009103
EMBL:AM920689 GenomeReviews:AM920689_GR GO:GO:0045226 GO:GO:0009243
GO:GO:0008460 TIGRFAMs:TIGR01181 eggNOG:COG1088 GO:GO:0019305
KO:K01710 PANTHER:PTHR10366:SF41 EMBL:AF204145
RefSeq:YP_001905139.1 ProteinModelPortal:B0RVL0 SMR:B0RVL0
STRING:B0RVL0 GeneID:6324993 KEGG:xca:xccb100_3734 PATRIC:24087420
OMA:GFIASHM ProtClustDB:CLSK445958 Uniprot:B0RVL0
Length = 351
Score = 188 (71.2 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 66/229 (28%), Positives = 107/229 (46%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G+++ E +S+G V + + + N + L N A H+ +K GD+ D + + +
Sbjct: 15 GNFVLE-AVSRGIRVVNLDALTYAGNLNTLASLEGN-ADHI--FVK---GDIGDGALVTR 67
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTC-KF-----HHQVK 163
++ QP V N AA+SHV S + + + VGTL LL+A++ K +
Sbjct: 68 LLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFR 127
Query: 164 FYQASTSELYGKVVETPQ-TETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFN 222
F ST E+YG + ET + TETTP+ P SPY+ +K + +V + Y + N
Sbjct: 128 FLHVSTDEVYGTLGETGKFTETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSN 187
Query: 223 HESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
+ P +F + I +AK G V G+ RDW D+ E
Sbjct: 188 NYGPY---HFPEKLIPLVIAKALAGEPLPVY-GDGKQVRDWLFVSDHCE 232
>UNIPROTKB|P0C7J0 [details] [associations]
symbol:rfbB "dTDP-glucose 4,6-dehydratase" species:190485
"Xanthomonas campestris pv. campestris str. ATCC 33913" [GO:0008460
"dTDP-glucose 4,6-dehydratase activity" evidence=ISS] [GO:0009103
"lipopolysaccharide biosynthetic process" evidence=ISS] [GO:0045226
"extracellular polysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
UniPathway:UPA00124 UniPathway:UPA00281 InterPro:IPR016040
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009103
EMBL:AE008922 GenomeReviews:AE008922_GR GO:GO:0045226 GO:GO:0009243
GO:GO:0008460 TIGRFAMs:TIGR01181 eggNOG:COG1088 GO:GO:0019305
HOGENOM:HOG000168006 KO:K01710 PANTHER:PTHR10366:SF41 OMA:GFIASHM
ProtClustDB:CLSK445958 RefSeq:NP_636013.1 ProteinModelPortal:P0C7J0
SMR:P0C7J0 GeneID:1001158 KEGG:xcc:XCC0621 PATRIC:24071892
Uniprot:P0C7J0
Length = 351
Score = 188 (71.2 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 66/229 (28%), Positives = 107/229 (46%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G+++ E +S+G V + + + N + L N A H+ +K GD+ D + + +
Sbjct: 15 GNFVLE-AVSRGIRVVNLDALTYAGNLNTLASLEGN-ADHI--FVK---GDIGDGALVTR 67
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTC-KF-----HHQVK 163
++ QP V N AA+SHV S + + + VGTL LL+A++ K +
Sbjct: 68 LLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFR 127
Query: 164 FYQASTSELYGKVVETPQ-TETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFN 222
F ST E+YG + ET + TETTP+ P SPY+ +K + +V + Y + N
Sbjct: 128 FLHVSTDEVYGTLGETGKFTETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSN 187
Query: 223 HESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
+ P +F + I +AK G V G+ RDW D+ E
Sbjct: 188 NYGPY---HFPEKLIPLVIAKALAGEPLPVY-GDGKQVRDWLFVSDHCE 232
>UNIPROTKB|O06329 [details] [associations]
symbol:rmlB "dTDP-glucose 4,6-dehydratase" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity"
evidence=IGI;IDA] [GO:0019305 "dTDP-rhamnose biosynthetic process"
evidence=IDA] [GO:0040007 "growth" evidence=IDA;IMP] [GO:0045226
"extracellular polysaccharide biosynthetic process" evidence=IGI]
[GO:0070404 "NADH binding" evidence=ISS] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 UniPathway:UPA00124
InterPro:IPR016040 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
Gene3D:3.40.50.720 EMBL:BX842583 GO:GO:0070404 GO:GO:0045226
GO:GO:0008460 TIGRFAMs:TIGR01181 eggNOG:COG1088 GO:GO:0019305
HOGENOM:HOG000168006 KO:K01710 PANTHER:PTHR10366:SF41 OMA:AYNDARY
PIR:E70566 RefSeq:NP_217981.1 RefSeq:NP_338096.1
RefSeq:YP_006516953.1 HSSP:P95780 ProteinModelPortal:O06329
SMR:O06329 PRIDE:O06329 EnsemblBacteria:EBMYCT00000003518
EnsemblBacteria:EBMYCT00000071206 GeneID:13317071 GeneID:887332
GeneID:926625 KEGG:mtc:MT3570 KEGG:mtu:Rv3464 KEGG:mtv:RVBD_3464
PATRIC:18129579 TubercuList:Rv3464 ProtClustDB:CLSK792508
Uniprot:O06329
Length = 331
Score = 186 (70.5 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 55/184 (29%), Positives = 93/184 (50%)
Query: 90 VEGSMKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRL 149
VE +++L GD+TD+ + Q+++ + V + AA+SHV + D E + +GT +
Sbjct: 47 VEDAIRLVQGDITDAELVSQLVA--ESDAVVHFAAESHVDNALDNPEPFLHTNVIGTFTI 104
Query: 150 LDAIKTCKFHHQVKFYQASTSELYGKVVETPQ---TETTPFYPRSPYACAKLYAYWIVVN 206
L+A++ H V+ + ST E+YG + + TE+TP+ P SPY+ K A +V
Sbjct: 105 LEAVR----RHGVRLHHISTDEVYGDLELDDRARFTESTPYNPSSPYSATKAGADMLVRA 160
Query: 207 YREAYNMFACNGILFNHESP-RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGH 265
+ +Y + A N+ P + E F+ R+IT + L Y N+ RDW H
Sbjct: 161 WVRSYGVRATISNCSNNYGPYQHVEKFIPRQITNVLTGRRPKL--YGAGANV---RDWIH 215
Query: 266 AKDY 269
D+
Sbjct: 216 VDDH 219
>TIGR_CMR|BA_1230 [details] [associations]
symbol:BA_1230 "dTDP-glucose 4,6-dehydratase"
species:198094 "Bacillus anthracis str. Ames" [GO:0008460
"dTDP-glucose 4,6-dehydratase activity" evidence=ISS] [GO:0009243
"O antigen biosynthetic process" evidence=ISS] [GO:0019305
"dTDP-rhamnose biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0009225
GO:GO:0008460 TIGRFAMs:TIGR01181 HSSP:P27830 HOGENOM:HOG000168006
KO:K01710 PANTHER:PTHR10366:SF41 OMA:GFIASHM RefSeq:NP_843702.1
RefSeq:YP_017844.1 RefSeq:YP_027409.1 PDB:4EGB PDBsum:4EGB
ProteinModelPortal:Q81TP0 SMR:Q81TP0 DNASU:1085406
EnsemblBacteria:EBBACT00000011863 EnsemblBacteria:EBBACT00000016310
EnsemblBacteria:EBBACT00000023983 GeneID:1085406 GeneID:2815086
GeneID:2848339 KEGG:ban:BA_1230 KEGG:bar:GBAA_1230 KEGG:bat:BAS1137
ProtClustDB:CLSK916141 BioCyc:BANT260799:GJAJ-1213-MONOMER
BioCyc:BANT261594:GJ7F-1267-MONOMER Uniprot:Q81TP0
Length = 322
Score = 182 (69.1 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 59/224 (26%), Positives = 107/224 (47%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHY--GDMTDSSCL 107
GS +++ + YE + II + +G + ++ S ++ ++ G++ + L
Sbjct: 13 GSNFVHYML-QSYETYKIINFDALTYSGNLNNVKS-----IQDHPNYYFVKGEIQNGELL 66
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
+I + + N AA+SHV S + + + +GT+ LL+ +K K+ H +K Q
Sbjct: 67 EHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVK--KYPH-IKLVQV 123
Query: 168 STSELYGKVVETPQ-TETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
ST E+YG + +T + TE TP P SPY+ +K A I + Y + Y + N+ P
Sbjct: 124 STDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGP 183
Query: 227 RR-GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDY 269
+ E + +T ++ L L Y G+ + RDW H D+
Sbjct: 184 YQYPEKLIPLMVTNALEGKKLPL--Y---GDGLNVRDWLHVTDH 222
>UNIPROTKB|Q9HTB6 [details] [associations]
symbol:rmd "GDP-6-deoxy-D-mannose reductase" species:208964
"Pseudomonas aeruginosa PAO1" [GO:0033705
"GDP-4-dehydro-6-deoxy-D-mannose reductase activity" evidence=IDA]
[GO:0055114 "oxidation-reduction process" evidence=IDA]
InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040 PseudoCAP:PA5454
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0044237
EMBL:AE004091 GenomeReviews:AE004091_GR GO:GO:0033705 EMBL:AF009955
PIR:H82964 RefSeq:NP_254141.1 HSSP:P27830 ProteinModelPortal:Q9HTB6
SMR:Q9HTB6 GeneID:883037 KEGG:pae:PA5454 PATRIC:19845791
HOGENOM:HOG000167992 OMA:NLLEACA ProtClustDB:CLSK869364
Uniprot:Q9HTB6
Length = 304
Score = 176 (67.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 53/187 (28%), Positives = 95/187 (50%)
Query: 97 HYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTC 156
H D+ + L + + P V +LA Q++V +F T +++ +GTL LL A+K
Sbjct: 36 HRYDLLEPDSLGDLWPEL-PDAVIHLAGQTYVPEAFRDPARTLQINLLGTLNLLQALKAR 94
Query: 157 KFHHQVKFYQASTSELYGKVVET--PQTETTPFYPRSPYACAKLYAYWIVVNY--REAYN 212
F F S+ ++YG+V E P E +PR+PYA +KL A + + + E +
Sbjct: 95 GFSGT--FLYISSGDVYGQVAEAALPIHEELIPHPRNPYAVSKLAAESLCLQWGITEGWR 152
Query: 213 MFACNGILFNHESPRRGENFVTRKITRSVAKISLGLM-EYVQLGNLDSKRDWGHAKDYVE 271
+ FNH P + ++FV R +A++ GL +++G++D RD+ +D +
Sbjct: 153 VLVARP--FNHIGPGQKDSFVIASAARQIARMKQGLQANRLEVGDIDVSRDFLDVQDVL- 209
Query: 272 VSSFERI 278
S++ R+
Sbjct: 210 -SAYLRL 215
>UNIPROTKB|A0QSK6 [details] [associations]
symbol:rmlB "dTDP-glucose 4,6-dehydratase" species:246196
"Mycobacterium smegmatis str. MC2 155" [GO:0008460 "dTDP-glucose
4,6-dehydratase activity" evidence=IGI] [GO:0045226 "extracellular
polysaccharide biosynthetic process" evidence=IGI]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
UniPathway:UPA00124 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 EMBL:CP000480 EMBL:CP001663
GenomeReviews:CP000480_GR GO:GO:0045226 GO:GO:0008460
TIGRFAMs:TIGR01181 eggNOG:COG1088 GO:GO:0019305
HOGENOM:HOG000168006 KO:K01710 PANTHER:PTHR10366:SF41
RefSeq:YP_006566244.1 RefSeq:YP_885894.1 ProteinModelPortal:A0QSK6
SMR:A0QSK6 STRING:A0QSK6 EnsemblBacteria:EBMYCT00000041385
GeneID:13429291 GeneID:4531259 KEGG:msg:MSMEI_1476
KEGG:msm:MSMEG_1512 PATRIC:18075481 OMA:AYNDARY
BioCyc:MSME246196:GJ4Y-1512-MONOMER Uniprot:A0QSK6
Length = 331
Score = 168 (64.2 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 53/184 (28%), Positives = 91/184 (49%)
Query: 90 VEGSMKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRL 149
V ++L GD+TD++ + +++ + V + AA++HV + E + VGT +
Sbjct: 47 VADRIRLVQGDITDAALVGDLVA--ESDAVVHFAAETHVDNALADPEPFLHSNVVGTYTI 104
Query: 150 LDAIKTCKFHHQVKFYQASTSELYGKV-VETPQ--TETTPFYPRSPYACAKLYAYWIVVN 206
L+A++ H V+ + ST E+YG + ++ P ETTP+ P SPY+ K A +V
Sbjct: 105 LEAVR----RHNVRLHHVSTDEVYGDLELDNPARFNETTPYNPSSPYSSTKAAADLLVRA 160
Query: 207 YREAYNMFACNGILFNHESP-RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGH 265
+ +Y + A N+ P + E F+ R+IT + L Y N+ RDW H
Sbjct: 161 WVRSYGVRATISNCSNNYGPYQHVEKFIPRQITNVLTGRRPKL--YGAGANV---RDWIH 215
Query: 266 AKDY 269
D+
Sbjct: 216 VDDH 219
>UNIPROTKB|Q6MWV3 [details] [associations]
symbol:galE1 "UDP-glucose 4-epimerase" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR001509
Pfam:PF01370 UniPathway:UPA00214 InterPro:IPR016040 GO:GO:0005886
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 EMBL:BX842583 GO:GO:0044237 GO:GO:0003978
GO:GO:0006012 KO:K01784 PIR:C70562 RefSeq:NP_215015.2
RefSeq:NP_338283.1 RefSeq:YP_006517123.1 HSSP:P09147
ProteinModelPortal:Q6MWV3 SMR:Q6MWV3 PRIDE:Q6MWV3
EnsemblBacteria:EBMYCT00000000637 EnsemblBacteria:EBMYCT00000072644
GeneID:13317242 GeneID:885765 GeneID:926502 KEGG:mtu:Rv3634c
KEGG:mtv:RVBD_3634c PATRIC:18129967 PATRIC:18156681
TubercuList:Rv3634c HOGENOM:HOG000167994 OMA:HSVADPQ
ProtClustDB:CLSK881159 BioCyc:MetaCyc:MONOMER-15254 Uniprot:Q6MWV3
Length = 314
Score = 164 (62.8 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 66/233 (28%), Positives = 105/233 (45%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGR---IQHLYSNPASHVEGSMKLHYGDMTDSSC 106
GS L + L++ G+ V G+ +F TGR ++HL N A HV + D
Sbjct: 13 GSTLVDRLLADGHSVVGL----DNFATGRATNLEHLADNSA-HVFVEADIVTAD------ 61
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
L I+ +P V++LAAQ V+ S ++ A V+ +GT+RL +A + V +
Sbjct: 62 LHAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQTGVRKIV--HT 119
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGIL-FNHES 225
+S +YG E P ET P P SPYA K+ + +R Y + C+ I N
Sbjct: 120 SSGGSIYGTPPEYPTPETAPTDPASPYAAGKVAGEIYLNTFRHLYGL-DCSHIAPANVYG 178
Query: 226 PRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVSSFERI 278
PR+ + + + G V G+ + RD+ D V+ +F R+
Sbjct: 179 PRQDPHGEAGVVAIFAQALLSGKPTRV-FGDGTNTRDYVFVDDVVD--AFVRV 228
>UNIPROTKB|P44914 [details] [associations]
symbol:rffG "dTDP-glucose 4,6-dehydratase" species:71421
"Haemophilus influenzae Rd KW20" [GO:0008460 "dTDP-glucose
4,6-dehydratase activity" evidence=ISS] [GO:0009103
"lipopolysaccharide biosynthetic process" evidence=ISS] [GO:0045226
"extracellular polysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
UniPathway:UPA00124 UniPathway:UPA00281 InterPro:IPR016040
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 EMBL:L42023
GenomeReviews:L42023_GR GO:GO:0009103 GO:GO:0045226 GO:GO:0009243
GO:GO:0008460 TIGRFAMs:TIGR01181 eggNOG:COG1088 GO:GO:0019305
KO:K01710 PANTHER:PTHR10366:SF41 PIR:C64099 RefSeq:NP_439034.2
ProteinModelPortal:P44914 SMR:P44914 GeneID:949510 KEGG:hin:HI0873
PATRIC:20190401 OMA:AKKAFRF ProtClustDB:CLSK824762 Uniprot:P44914
Length = 338
Score = 161 (61.7 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 61/236 (25%), Positives = 109/236 (46%)
Query: 50 GSYLAEFLISKGYE-VHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
GS L ++I+ + V I + + + N ++ + +NP E K+ D+ D + +
Sbjct: 14 GSALIRYIINHTQDFVINIDKLTYAANQSALREVENNPRYVFE---KV---DICDLNVIE 67
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQV------ 162
I QP V +LAA+SHV S + + + VGT LL+ K + H +
Sbjct: 68 NIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKN--YWHTLDEAKKT 125
Query: 163 --KFYQASTSELYGKV-VETPQ-TETTPFYPRSPYACAKLYAYWIVVNYREAYNM-FACN 217
+F+ ST E+YG + + P TE +P++P SPY+ +K + +V + Y +
Sbjct: 126 TFRFHHISTDEVYGDLSLSEPAFTEQSPYHPSSPYSASKAASNHLVQAWHRTYGLPVIIT 185
Query: 218 GILFNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVS 273
N+ + + E + I+ +V L + Y G+ RDW +D+V+ S
Sbjct: 186 NSSNNYGAYQHAEKLIPLMISNAVMGKPLPI--Y---GDGQQIRDWLFVEDHVQAS 236
>UNIPROTKB|P27830 [details] [associations]
symbol:rffG "dTDP-glucose 4,6-dehydratase 2" species:83333
"Escherichia coli K-12" [GO:0050662 "coenzyme binding"
evidence=IEA] [GO:0009225 "nucleotide-sugar metabolic process"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0019305 "dTDP-rhamnose biosynthetic process" evidence=IEA]
[GO:0045226 "extracellular polysaccharide biosynthetic process"
evidence=IDA] [GO:0009103 "lipopolysaccharide biosynthetic process"
evidence=IEA;IDA] [GO:0008460 "dTDP-glucose 4,6-dehydratase
activity" evidence=IEA;IDA] [GO:0009243 "O antigen biosynthetic
process" evidence=IEA] InterPro:IPR001509 InterPro:IPR005888
Pfam:PF01370 UniPathway:UPA00124 UniPathway:UPA00281
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0009103 EMBL:M87049 OMA:RAYRQQM
GO:GO:0045226 GO:GO:0009243 GO:GO:0008460 TIGRFAMs:TIGR01181
eggNOG:COG1088 GO:GO:0019305 HOGENOM:HOG000168006 KO:K01710
PANTHER:PTHR10366:SF41 PIR:G65182 RefSeq:YP_026255.1
RefSeq:YP_491651.1 PDB:1BXK PDBsum:1BXK ProteinModelPortal:P27830
SMR:P27830 PRIDE:P27830 EnsemblBacteria:EBESCT00000002573
EnsemblBacteria:EBESCT00000015511 GeneID:12933083 GeneID:948300
KEGG:ecj:Y75_p3387 KEGG:eco:b3788 PATRIC:32123069 EchoBASE:EB1422
EcoGene:EG11453 ProtClustDB:PRK10217
BioCyc:EcoCyc:DTDPGLUCDEHYDRAT2-MONOMER
BioCyc:ECOL316407:JW5598-MONOMER
BioCyc:MetaCyc:DTDPGLUCDEHYDRAT2-MONOMER EvolutionaryTrace:P27830
Genevestigator:P27830 Uniprot:P27830
Length = 355
Score = 161 (61.7 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 55/179 (30%), Positives = 84/179 (46%)
Query: 100 DMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK----- 154
D+ D + L ++ + QP V +LAA+SHV S D E + VGT LL+A +
Sbjct: 59 DICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNA 118
Query: 155 -TCKFHHQVKFYQASTSELYGKVVETPQ--TETTPFYPRSPYACAKLYAYWIVVNYREAY 211
T +F+ ST E+YG + T TETTP+ P SPY+ +K + +V + Y
Sbjct: 119 LTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 212 NMFACNGILFNHESPRR-GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDY 269
+ N+ P E + I ++A SL + Y GN RDW + +D+
Sbjct: 179 GLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPV--Y---GNGQQIRDWLYVEDH 232
>TIGR_CMR|GSU_1975 [details] [associations]
symbol:GSU_1975 "NAD-dependent epimerase/dehydratase
family protein" species:243231 "Geobacter sulfurreducens PCA"
[GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS]
[GO:0016829 "lyase activity" evidence=ISS] [GO:0016857 "racemase
and epimerase activity, acting on carbohydrates and derivatives"
evidence=ISS] InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0009225 EMBL:AE017180 GenomeReviews:AE017180_GR
HOGENOM:HOG000167994 GO:GO:0008460 PANTHER:PTHR10366:SF41
HSSP:P95780 ProtClustDB:CLSK864552 RefSeq:NP_953024.1
ProteinModelPortal:Q74BR6 GeneID:2685764 KEGG:gsu:GSU1975
PATRIC:22026813 OMA:AMKGCDV BioCyc:GSUL243231:GH27-1926-MONOMER
InterPro:IPR026390 TIGRFAMs:TIGR04180 Uniprot:Q74BR6
Length = 336
Score = 157 (60.3 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 60/223 (26%), Positives = 103/223 (46%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNT-GRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
GS+L E L+ +GY+ + +S FN+ G + HL +P + S+ + GD+ D +
Sbjct: 18 GSHLTEALLMRGYDTRAFVYYNS-FNSWGWLDHL--DP--ELLKSLDVFAGDIRDPHGVR 72
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+ + V +LAA + S+ + + + GTL ++ A + K S
Sbjct: 73 EAMKGCDV--VLHLAALIAIPYSYHSPDTYVDTNVKGTLNVVQAARELGV---AKVVHTS 127
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRR 228
TSE+YG P TE P +SPY+ +K+ A I +++ +++ FN PR+
Sbjct: 128 TSEVYGTARFVPITEEHPLQGQSPYSASKIGADQIAMSFYSSFDTPVAIIRPFNTYGPRQ 187
Query: 229 GEN-FVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYV 270
F+ IT+ I+ G ++LG L RD + D V
Sbjct: 188 SARAFIPTVITQ----IASGART-LRLGALHPTRDLNYVADTV 225
>UNIPROTKB|O53634 [details] [associations]
symbol:gca "POSSIBLE GDP-MANNOSE 4,6-DEHYDRATASE GCA
(GDP-D-MANNOSE DEHYDRATASE)" species:83332 "Mycobacterium
tuberculosis H37Rv" [GO:0040007 "growth" evidence=IMP]
InterPro:IPR001509 InterPro:IPR020904 Pfam:PF01370 PROSITE:PS00061
InterPro:IPR016040 GO:GO:0040007 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0016491 EMBL:BX842572 GO:GO:0044237
GO:GO:0055114 KO:K01711 GO:GO:0008446 HOGENOM:HOG000167992
HSSP:P32054 EMBL:CP003248 PIR:C70840 RefSeq:NP_214626.1
RefSeq:NP_334530.1 RefSeq:YP_006513430.1 SMR:O53634 DNASU:886907
EnsemblBacteria:EBMYCT00000003264 EnsemblBacteria:EBMYCT00000070103
GeneID:13316094 GeneID:886907 GeneID:922974 KEGG:mtc:MT0121
KEGG:mtu:Rv0112 KEGG:mtv:RVBD_0112 PATRIC:18121990
TubercuList:Rv0112 OMA:CSGVATR ProtClustDB:CLSK790272
Uniprot:O53634
Length = 318
Score = 155 (59.6 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 57/214 (26%), Positives = 96/214 (44%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS+LAE L++ G++V+ R + + +Q N A D+TD +
Sbjct: 13 GSHLAEMLLAAGHDVYATYCRPT-IDPSDLQF---NGAEV----------DITDWCSVYD 58
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
I++ +P V++LAAQS+ VS+ T + VGT + +A++ + H K A +
Sbjct: 59 SIATFRPDAVFHLAAQSYPAVSWARPVETLTTNMVGTAIVFEALRRVRPH--AKIIVAGS 116
Query: 170 SELYGKV--VETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
S YG V E P E P PY +K + Y ++Y M +FN PR
Sbjct: 117 SAEYGFVDPSEVPINERRELRPLHPYGVSKAATDMLAYQYHKSYGMHTVVARIFNCTGPR 176
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKR 261
+ + ++ + R +++GNL +KR
Sbjct: 177 KVGDALSDFVRRCTWLEHHPEQSAIRVGNLKTKR 210
>TIGR_CMR|SO_3167 [details] [associations]
symbol:SO_3167 "dTDP-glucose 4,6-dehydratase"
species:211586 "Shewanella oneidensis MR-1" [GO:0008460
"dTDP-glucose 4,6-dehydratase activity" evidence=ISS] [GO:0009103
"lipopolysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0009225 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008460
TIGRFAMs:TIGR01181 HSSP:P27830 HOGENOM:HOG000168006 KO:K01710
PANTHER:PTHR10366:SF41 RefSeq:NP_718723.1 ProteinModelPortal:Q8ECH5
SMR:Q8ECH5 GeneID:1170861 KEGG:son:SO_3167 PATRIC:23526018
OMA:IDLIIHK ProtClustDB:CLSK907039 Uniprot:Q8ECH5
Length = 343
Score = 153 (58.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 56/200 (28%), Positives = 95/200 (47%)
Query: 84 SNPAS--HVEGSMKLHY--GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTA 139
S+P S V + + H+ D+ D + L Q++ QP + +LAA+SHV S D
Sbjct: 38 SHPESLAGVADNERYHFVQADICDRARLEQVLQQFQPDLMMHLAAESHVDRSIDGPAEFI 97
Query: 140 EVDAVGTLRLLDAIK----TCKFHHQVKF--YQASTSELYGKVVETPQ-TETTPFYPRSP 192
+ + VGT LL+A + T Q +F + ST E++G + ET +ET+ + P SP
Sbjct: 98 QTNIVGTYTLLEACRSYYQTLGQAQQRRFRLHHISTDEVFGSLTETGLFSETSAYDPSSP 157
Query: 193 YACAKLYAYWIVVNYREAYNMFACNGILFNHESP-RRGENFVTRKITRSVAKISLGLMEY 251
Y+ +K A +V + Y + N+ P + E + ++ ++ L + Y
Sbjct: 158 YSASKASADHLVRAWHRTYALPIVITNCSNNYGPFQYPEKLIPLMVSNALQSKPLPI--Y 215
Query: 252 VQLGNLDSKRDWGHAKDYVE 271
GN RDW + D+V+
Sbjct: 216 ---GNGQQVRDWLYVDDHVK 232
>UNIPROTKB|Q0C421 [details] [associations]
symbol:HNE_0794 "Putative GDP-6-deoxy-D-lyxo-4-hexulose
reductase" species:228405 "Hyphomonas neptunium ATCC 15444"
[GO:0000271 "polysaccharide biosynthetic process" evidence=ISS]
[GO:0003824 "catalytic activity" evidence=ISS] InterPro:IPR001509
InterPro:IPR008089 Pfam:PF01370 PRINTS:PR01713 InterPro:IPR016040
GO:GO:0003824 eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0044237 EMBL:CP000158 GenomeReviews:CP000158_GR
GO:GO:0000271 GO:GO:0016857 HOGENOM:HOG000167992 OMA:NLLEACA
RefSeq:YP_759522.1 ProteinModelPortal:Q0C421 STRING:Q0C421
GeneID:4288576 KEGG:hne:HNE_0794 PATRIC:32214396
BioCyc:HNEP228405:GI69-836-MONOMER Uniprot:Q0C421
Length = 324
Score = 152 (58.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 56/203 (27%), Positives = 91/203 (44%)
Query: 80 QH--LYSNPASHVEGSMKL---HYGDMTDSSCLVQIISSVQPREVYNLAA---QSHVKVS 131
QH L++ S E S+++ H D+ DS+ + +++ VQP + +LAA S K
Sbjct: 29 QHSELHTLTVSGAEQSLRIGQAHRCDLRDSASIHRLLQEVQPTGIVHLAAIALPSQAKAD 88
Query: 132 FDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQASTSELYGKVVETPQ---TETTPFY 188
+ + +AV L +A+ C H + F A +SE YG T E T
Sbjct: 89 -PSAAWAVNFEAVRQLG--EAVLACSPHAVLVF--AGSSESYGASFNTVAGAVNEGTALR 143
Query: 189 PRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLG- 247
P +PYA K A + + + A FNH P + ++V +A+I G
Sbjct: 144 PLTPYAATKAAAD-VALGQMRNDGLNAVRFRAFNHTGPGQSPDYVVASFAAQIAQIIAGD 202
Query: 248 LMEYVQLGNLDSKRDWGHAKDYV 270
+++GNLD+ RD+ +D V
Sbjct: 203 HPPVIRVGNLDAMRDFVDVRDVV 225
>TIGR_CMR|CHY_0979 [details] [associations]
symbol:CHY_0979 "dTDP-glucose 4,6-dehydratase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=ISS]
[GO:0009103 "lipopolysaccharide biosynthetic process" evidence=ISS]
[GO:0019305 "dTDP-rhamnose biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0009225 GO:GO:0008460
TIGRFAMs:TIGR01181 eggNOG:COG1088 HOGENOM:HOG000168006 KO:K01710
PANTHER:PTHR10366:SF41 RefSeq:YP_359826.1 ProteinModelPortal:Q3ADF8
SMR:Q3ADF8 STRING:Q3ADF8 GeneID:3726804 KEGG:chy:CHY_0979
PATRIC:21275091 OMA:AEFRPEA ProtClustDB:CLSK2310403
BioCyc:CHYD246194:GJCN-978-MONOMER Uniprot:Q3ADF8
Length = 309
Score = 150 (57.9 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 50/183 (27%), Positives = 81/183 (44%)
Query: 90 VEGSMKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRL 149
V +K + D+ D + + +I +P V + AA+SHV S E + GT +
Sbjct: 44 VRDRIKFYKADVADKTAIEEIFDKEKPEAVVHFAAESHVDRSIQDPTPFIETNVKGTQVM 103
Query: 150 LDAIKTCKFHHQVKFYQASTSELYGKVVETPQ-TETTPFYPRSPYACAKLYAYWIVVNYR 208
LDA + K+ + KF ST E+YG++ + Q TE +P P SPY+ +K A + Y
Sbjct: 104 LDASR--KYGIE-KFVHISTDEVYGELGKEGQFTEESPLRPNSPYSVSKAAADMLARAYH 160
Query: 209 EAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKD 268
Y + N+ P + K+ V K +L G + R+W + D
Sbjct: 161 RTYGLPVIVARPCNNYGPWQ----YPEKLIPVVIKKALNNEPIPVYGQGLNVREWLYVDD 216
Query: 269 YVE 271
+E
Sbjct: 217 CIE 219
>UNIPROTKB|P37761 [details] [associations]
symbol:rfbB "dTDP-glucose 4,6-dehydratase" species:485
"Neisseria gonorrhoeae" [GO:0008460 "dTDP-glucose 4,6-dehydratase
activity" evidence=ISS] [GO:0009103 "lipopolysaccharide
biosynthetic process" evidence=ISS] [GO:0045226 "extracellular
polysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
UniPathway:UPA00124 UniPathway:UPA00281 InterPro:IPR016040
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009103
GO:GO:0045226 GO:GO:0009243 GO:GO:0008460 TIGRFAMs:TIGR01181
GO:GO:0019305 PANTHER:PTHR10366:SF41 EMBL:Z32742 EMBL:Z21508
PIR:S47045 ProteinModelPortal:P37761 SMR:P37761 Uniprot:P37761
Length = 346
Score = 146 (56.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 49/179 (27%), Positives = 85/179 (47%)
Query: 100 DMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKT---- 155
D+ D + L ++ + +P V +LAA+SHV + + + VGT LL+A +
Sbjct: 64 DICDRAELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQ 123
Query: 156 --CKFHHQVKFYQASTSELYGKVVETPQ--TETTPFYPRSPYACAKLYAYWIVVNYREAY 211
+ +F+ ST E+YG + T TETTP+ P SPY+ +K A +V ++ Y
Sbjct: 124 MPSEKREAFRFHHISTDEVYGDLHGTDDLFTETTPYAPSSPYSASKAAADHLVRAWQRTY 183
Query: 212 NMFACNGILFNHESPRR-GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDY 269
+ + N+ PR+ E + I +++ L + Y G+ RDW +D+
Sbjct: 184 RLPSIVSNCSNNYGPRQFPEKLIPLMILNALSGKPLPV--Y---GDGAQIRDWLFVEDH 237
>UNIPROTKB|Q9ZAE8 [details] [associations]
symbol:acbB "dTDP-glucose 4,6-dehydratase" species:134676
"Actinoplanes sp. SE50/110" [GO:0008460 "dTDP-glucose
4,6-dehydratase activity" evidence=ISS] [GO:0045226 "extracellular
polysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0009225 GO:GO:0045226 GO:GO:0008460 TIGRFAMs:TIGR01181
KO:K01710 PANTHER:PTHR10366:SF41 EMBL:Y18523 EMBL:CP003170
RefSeq:YP_006266644.1 ProteinModelPortal:Q9ZAE8 SMR:Q9ZAE8
GeneID:12821023 KEGG:ase:ACPL_3681 Uniprot:Q9ZAE8
Length = 320
Score = 144 (55.7 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 49/171 (28%), Positives = 77/171 (45%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKF 158
GD+ D + +++ + V + AA++HV S S + VGT LLDA
Sbjct: 63 GDICDEGLIEGLMA--RHDTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAALR--- 117
Query: 159 HHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNG 218
HH +F ST E+YG + E P P SPYA +K + + + Y + + M
Sbjct: 118 HHIGRFLHVSTDEVYGSIDTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMDVVVT 177
Query: 219 ILFNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDY 269
N+ PR+ F + I V ++ GL + G+ + RDW H D+
Sbjct: 178 RCSNNYGPRQ---FPEKMIPLFVTRLLDGL-DVPVYGDGRNIRDWLHVSDH 224
>TIGR_CMR|GSU_2366 [details] [associations]
symbol:GSU_2366 "dTDP-glucose 4,6-dehydratase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008460
"dTDP-glucose 4,6-dehydratase activity" evidence=ISS] [GO:0009103
"lipopolysaccharide biosynthetic process" evidence=ISS] [GO:0019305
"dTDP-rhamnose biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0009225 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008460
TIGRFAMs:TIGR01181 HOGENOM:HOG000168006 KO:K01710
PANTHER:PTHR10366:SF41 HSSP:P26391 OMA:IQYVKDR RefSeq:NP_953413.1
ProteinModelPortal:Q74AI8 SMR:Q74AI8 GeneID:2686639
KEGG:gsu:GSU2366 PATRIC:22027581 ProtClustDB:CLSK828808
BioCyc:GSUL243231:GH27-2368-MONOMER Uniprot:Q74AI8
Length = 358
Score = 144 (55.7 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 50/175 (28%), Positives = 80/175 (45%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKT--- 155
GD+ D+ + +I++ + V + AA+SHV S E + +GT LL+ +
Sbjct: 65 GDIGDADLVRRILAEERIDAVVHFAAESHVDRSILGPEIFVRTNVLGTQVLLEESRRHWE 124
Query: 156 CKFHHQVKFYQASTSELYGKVVETPQ-TETTPFYPRSPYACAKLYAYWIVVNYREAYNMF 214
+ +F ST E+YG + ET TE TP P SPY+ +K + +V Y E + +
Sbjct: 125 SGAIERFRFLHVSTDEVYGTLGETGYFTEETPLAPNSPYSASKAGSDLLVRAYNETFGLP 184
Query: 215 ACNGILFNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDY 269
N+ P + F + I + I G V G+ + RDW H KD+
Sbjct: 185 VLTTRCSNNYGPFQ---FPEKLIPLMIHNIVAGKPLPVY-GDGRNVRDWLHVKDH 235
>UNIPROTKB|P55294 [details] [associations]
symbol:rfbB1 "dTDP-glucose 4,6-dehydratase" species:122586
"Neisseria meningitidis MC58" [GO:0008460 "dTDP-glucose
4,6-dehydratase activity" evidence=ISS] [GO:0009103
"lipopolysaccharide biosynthetic process" evidence=ISS] [GO:0045226
"extracellular polysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
UniPathway:UPA00124 UniPathway:UPA00281 InterPro:IPR016040
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009103
EMBL:AE002098 GenomeReviews:AE002098_GR GO:GO:0045226 GO:GO:0009243
GO:GO:0008460 TIGRFAMs:TIGR01181 eggNOG:COG1088 GO:GO:0019305
HOGENOM:HOG000168006 KO:K01710 PANTHER:PTHR10366:SF41
ProtClustDB:CLSK877380 EMBL:L09188 PIR:G81242 PIR:S42431
RefSeq:NP_273127.1 RefSeq:NP_273142.1 ProteinModelPortal:P55294
SMR:P55294 EnsemblBacteria:EBNEIT00000009034
EnsemblBacteria:EBNEIT00000009474 GeneID:902170 GeneID:902183
KEGG:nme:NMB0063 KEGG:nme:NMB0079 PATRIC:20355131 OMA:ARSWWNT
BioCyc:NMEN122586:GHGG-64-MONOMER BioCyc:NMEN122586:GHGG-80-MONOMER
Uniprot:P55294
Length = 355
Score = 142 (55.0 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 37/122 (30%), Positives = 62/122 (50%)
Query: 100 DMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKT---- 155
D+ D + L ++ + +P V +LAA+SHV S + + + VGT LL+A +
Sbjct: 59 DICDRAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQ 118
Query: 156 --CKFHHQVKFYQASTSELYGKVVETPQ--TETTPFYPRSPYACAKLYAYWIVVNYREAY 211
+ H +F+ ST E+YG + T TET P+ P SPY+ +K + +V + Y
Sbjct: 119 MPSEQHEAFRFHHISTDEVYGDLGGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 212 NM 213
+
Sbjct: 179 GL 180
>UNIPROTKB|Q9S642 [details] [associations]
symbol:rfbB1 "dTDP-glucose 4,6-dehydratase" species:122587
"Neisseria meningitidis Z2491" [GO:0008460 "dTDP-glucose
4,6-dehydratase activity" evidence=ISS] [GO:0009103
"lipopolysaccharide biosynthetic process" evidence=ISS] [GO:0045226
"extracellular polysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
UniPathway:UPA00124 UniPathway:UPA00281 InterPro:IPR016040
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009103
OMA:RAYRQQM EMBL:AL157959 GenomeReviews:AL157959_GR GO:GO:0045226
GO:GO:0009243 GO:GO:0008460 TIGRFAMs:TIGR01181 eggNOG:COG1088
GO:GO:0019305 HOGENOM:HOG000168006 KO:K01710 PANTHER:PTHR10366:SF41
EMBL:AF083467 PIR:G82014 RefSeq:YP_002341735.1
RefSeq:YP_002341747.1 ProteinModelPortal:Q9S642 SMR:Q9S642
EnsemblBacteria:EBNEIT00000000158 EnsemblBacteria:EBNEIT00000001121
GeneID:906204 GeneID:906218 KEGG:nma:NMA0189 KEGG:nma:NMA0204
PATRIC:20360960 ProtClustDB:CLSK877380
BioCyc:NMEN122587:GI3Q-220-MONOMER
BioCyc:NMEN122587:GI3Q-233-MONOMER Uniprot:Q9S642
Length = 341
Score = 141 (54.7 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 37/122 (30%), Positives = 62/122 (50%)
Query: 100 DMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKF- 158
D+ D + L ++ + +P V +LAA+SHV S + + + VGT LL+A + +
Sbjct: 59 DICDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQ 118
Query: 159 -----HHQVKFYQASTSELYGKVVETPQ--TETTPFYPRSPYACAKLYAYWIVVNYREAY 211
H +F+ ST E+YG + T TET P+ P SPY+ +K + +V + Y
Sbjct: 119 MPSEKHEAFRFHHISTDEVYGDLSGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 212 NM 213
+
Sbjct: 179 GL 180
>RGD|1306544 [details] [associations]
symbol:Tgds "TDP-glucose 4,6-dehydratase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0050662 "coenzyme binding" evidence=IEA] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040 RGD:1306544
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225
GO:GO:0008460 PANTHER:PTHR10366:SF41 OMA:GFIASHM IPI:IPI00373689
Ensembl:ENSRNOT00000012925 UCSC:RGD:1306544 Uniprot:F1M7R7
Length = 355
Score = 134 (52.2 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 41/127 (32%), Positives = 66/127 (51%)
Query: 86 PASHVEGSMKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMS-EYTAEVDAV 144
P S+ + + K GD+ DS + ++ S + V + AAQ+HV +SF + E+T V+
Sbjct: 63 PVSNKQ-NYKFIQGDICDSHFVKRLFESEKIDIVLHFAAQTHVDLSFVRAFEFTY-VNVY 120
Query: 145 GTLRLLDAIKTCKFHHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIV 204
GT L++ + KF ST E+YG ++ E++P P +PYA +K A V
Sbjct: 121 GTHVLVNTAYEARVE---KFIYVSTDEVYGGSLDQEFDESSPKQPTNPYASSKAAAECFV 177
Query: 205 VNYREAY 211
+Y E Y
Sbjct: 178 QSYWERY 184
>UNIPROTKB|P29782 [details] [associations]
symbol:strE "dTDP-glucose 4,6-dehydratase" species:1911
"Streptomyces griseus" [GO:0008460 "dTDP-glucose 4,6-dehydratase
activity" evidence=ISS] [GO:0019872 "streptomycin biosynthetic
process" evidence=IGI] [GO:0045226 "extracellular polysaccharide
biosynthetic process" evidence=ISS] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 UniPathway:UPA00066
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0009225 GO:GO:0019872 GO:GO:0045226 GO:GO:0008460
TIGRFAMs:TIGR01181 PANTHER:PTHR10366:SF41 EMBL:X62567 PIR:S18617
ProteinModelPortal:P29782 SMR:P29782 Uniprot:P29782
Length = 328
Score = 132 (51.5 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 47/155 (30%), Positives = 71/155 (45%)
Query: 118 EVYNLAAQSHVKVSF-DMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQASTSELYGKV 176
+V +LAA+SHV S D S + + GT LLDA H F Q ST E+YG +
Sbjct: 78 QVVHLAAESHVDRSLLDASVFV-RTNVHGTQTLLDAATR---HGVASFVQVSTDEVYGSL 133
Query: 177 VETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRK 236
TE P P SPY+ +K + + + ++ + N+ PR+ F +
Sbjct: 134 EHGSWTEDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTRCSNNYGPRQ---FPEKL 190
Query: 237 ITRSVAKISLGLMEYVQL-GNLDSKRDWGHAKDYV 270
I R + + G V L G+ + R+W H D+V
Sbjct: 191 IPRFITLLMDG--HRVPLYGDGLNVREWLHVDDHV 223
>WB|WBGene00018737 [details] [associations]
symbol:F53B1.4 species:6239 "Caenorhabditis elegans"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0050662 "coenzyme
binding" evidence=IEA] [GO:0003854 "3-beta-hydroxy-delta5-steroid
dehydrogenase activity" evidence=IEA] [GO:0006694 "steroid
biosynthetic process" evidence=IEA] [GO:0016616 "oxidoreductase
activity, acting on the CH-OH group of donors, NAD or NADP as
acceptor" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0009058 "biosynthetic process" evidence=IEA]
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0008831 "dTDP-4-dehydrorhamnose reductase activity"
evidence=IEA] [GO:0045226 "extracellular polysaccharide
biosynthetic process" evidence=IEA] [GO:0040017 "positive
regulation of locomotion" evidence=IMP] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225 GO:GO:0040017
GeneTree:ENSGT00530000063128 EMBL:FO081052 GO:GO:0008460
eggNOG:COG1088 HOGENOM:HOG000168006 KO:K01710
PANTHER:PTHR10366:SF41 OMA:AYNDARY HSSP:P26391 PIR:T16444
RefSeq:NP_508390.1 UniGene:Cel.908 ProteinModelPortal:Q20697
SMR:Q20697 STRING:Q20697 PaxDb:Q20697 EnsemblMetazoa:F53B1.4
GeneID:180525 KEGG:cel:CELE_F53B1.4 UCSC:F53B1.4 CTD:180525
WormBase:F53B1.4 InParanoid:Q20697 NextBio:909738 Uniprot:Q20697
Length = 342
Score = 132 (51.5 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 49/210 (23%), Positives = 92/210 (43%)
Query: 101 MTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHH 160
+ D L++ + + V + AA +HV S+ T + + + T LL++I +
Sbjct: 69 LEDQPTLIKTLQENEVDMVIHFAAITHVDESYSDRIGTIQDNIISTTTLLESIVNSPYKG 128
Query: 161 QVKFYQASTSELYGKVVE--TPQTETTPF-YPRSPYACAKLYAYWIVVNYREAYNMFACN 217
K ST E+YG E TP++E+ P +PYA +K ++ +Y +Y +
Sbjct: 129 VKKLVHISTDEVYGDSFEDTTPKSESASLPNPTNPYAASKAACEMVIRSYWHSYKLPYVM 188
Query: 218 GILFNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVSSFER 277
+ N PR+ + K+ K++L Y +G+ R W + +D E +
Sbjct: 189 VRMNNVYGPRQ----IHTKLIPKFTKLALDGKPYPLMGDGLHTRSWMYVEDCSEAITRVA 244
Query: 278 IEWRDFVHTYRLYRD--IGHISVTKLQKYT 305
+E Y + D + +I +TK+ +T
Sbjct: 245 LEGT-LGEIYNIGTDFEMTNIELTKMIHFT 273
>UNIPROTKB|F1RP60 [details] [associations]
symbol:TGDS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050662 "coenzyme binding" evidence=IEA] [GO:0009225
"nucleotide-sugar metabolic process" evidence=IEA] [GO:0008460
"dTDP-glucose 4,6-dehydratase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225
GeneTree:ENSGT00530000063128 GO:GO:0008460 KO:K01710
PANTHER:PTHR10366:SF41 OMA:GFIASHM EMBL:CU986273
RefSeq:XP_003131096.2 Ensembl:ENSSSCT00000010407 GeneID:100517301
KEGG:ssc:100517301 Uniprot:F1RP60
Length = 355
Score = 132 (51.5 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 40/118 (33%), Positives = 60/118 (50%)
Query: 95 KLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMS-EYTAEVDAVGTLRLLDAI 153
K GD+ DS + + + + V + AAQ+HV +SF + E+T V+ GT LL A
Sbjct: 71 KFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTY-VNVYGTHVLLSAA 129
Query: 154 KTCKFHHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAY 211
+ KF ST E+YG ++ E++P P +PYA +K A V +Y E Y
Sbjct: 130 HEARVE---KFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWERY 184
>MGI|MGI:1923605 [details] [associations]
symbol:Tgds "TDP-glucose 4,6-dehydratase" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0016829 "lyase activity" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0050662 "coenzyme binding"
evidence=IEA] InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 MGI:MGI:1923605 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0009225 GeneTree:ENSGT00530000063128
GO:GO:0008460 eggNOG:COG1088 HOGENOM:HOG000168006 KO:K01710
PANTHER:PTHR10366:SF41 OMA:GFIASHM CTD:23483 HOVERGEN:HBG007741
OrthoDB:EOG4PVP08 EMBL:AK154341 EMBL:BC021419 IPI:IPI00405383
RefSeq:NP_083854.3 UniGene:Mm.251537 ProteinModelPortal:Q8VDR7
SMR:Q8VDR7 STRING:Q8VDR7 PhosphoSite:Q8VDR7 PRIDE:Q8VDR7
Ensembl:ENSMUST00000022727 GeneID:76355 KEGG:mmu:76355
InParanoid:Q3U4A6 NextBio:344957 Bgee:Q8VDR7 CleanEx:MM_TGDS
Genevestigator:Q8VDR7 GermOnline:ENSMUSG00000022130 Uniprot:Q8VDR7
Length = 355
Score = 132 (51.5 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 43/128 (33%), Positives = 68/128 (53%)
Query: 86 PASHVEGSMKLHYGDMTDSSCLVQIISSVQPRE-VYNLAAQSHVKVSFDMS-EYTAEVDA 143
P S+ + + K GD+ DS V+++ V+ + V + AAQ+HV +SF + E+T V+
Sbjct: 63 PVSNKQ-NYKFIQGDICDSH-FVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTY-VNV 119
Query: 144 VGTLRLLDAIKTCKFHHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWI 203
GT L++A KF ST E+YG ++ E++P P +PYA +K A
Sbjct: 120 YGTHVLVNAAYEAGVE---KFIYVSTDEVYGGSLDQEFDESSPKQPTNPYASSKAAAECF 176
Query: 204 VVNYREAY 211
V +Y E Y
Sbjct: 177 VQSYWERY 184
>UNIPROTKB|P37759 [details] [associations]
symbol:rfbB "RmlB" species:83333 "Escherichia coli K-12"
[GO:0050662 "coenzyme binding" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0009225 "nucleotide-sugar
metabolic process" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0019305 "dTDP-rhamnose biosynthetic process" evidence=IEA]
[GO:0045226 "extracellular polysaccharide biosynthetic process"
evidence=ISS] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0009103 "lipopolysaccharide biosynthetic process"
evidence=IEA;ISS] [GO:0008460 "dTDP-glucose 4,6-dehydratase
activity" evidence=IEA;ISS] [GO:0009243 "O antigen biosynthetic
process" evidence=IEA] InterPro:IPR001509 InterPro:IPR005888
Pfam:PF01370 UniPathway:UPA00124 UniPathway:UPA00281
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0009103 OMA:KWWSRVL EMBL:U09876
GO:GO:0045226 GO:GO:0009243 GO:GO:0008460 TIGRFAMs:TIGR01181
GO:GO:0019305 PIR:H64969 RefSeq:NP_416545.1 RefSeq:YP_490283.1
ProteinModelPortal:P37759 SMR:P37759 DIP:DIP-10680N IntAct:P37759
MINT:MINT-1302103 PRIDE:P37759 EnsemblBacteria:EBESCT00000003521
EnsemblBacteria:EBESCT00000014484 GeneID:12930685 GeneID:945276
KEGG:ecj:Y75_p2004 KEGG:eco:b2041 PATRIC:32119415 EchoBASE:EB2311
EcoGene:EG12412 HOGENOM:HOG000168006 KO:K01710 ProtClustDB:PRK10084
BioCyc:EcoCyc:DTDPGLUCDEHYDRAT-MONOMER
BioCyc:ECOL316407:JW2026-MONOMER
BioCyc:MetaCyc:DTDPGLUCDEHYDRAT-MONOMER Genevestigator:P37759
PANTHER:PTHR10366:SF41 Uniprot:P37759
Length = 361
Score = 130 (50.8 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 50/188 (26%), Positives = 83/188 (44%)
Query: 98 YGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKT-- 155
+ D+ D+ + +I + QP V +LAA+SHV S E + VGT LL+A +
Sbjct: 56 HADICDAPAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYW 115
Query: 156 ----CKFHHQVKFYQASTSELYG------KVVETPQ----TETTPFYPRSPYACAKLYAY 201
+ +F+ ST E+YG +V T + TETT + P SPY+ +K +
Sbjct: 116 SALDSDKKNSFRFHHISTDEVYGDLPHPDEVNNTEELPLFTETTAYAPSSPYSASKASSD 175
Query: 202 WIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKR 261
+V ++ Y + N+ P +F + I + G + G D R
Sbjct: 176 HLVRAWKRTYGLPTIVTNCSNNYGPY---HFPEKLIPLVILNALEGKALPIY-GKGDQIR 231
Query: 262 DWGHAKDY 269
DW + +D+
Sbjct: 232 DWLYVEDH 239
>UNIPROTKB|P26391 [details] [associations]
symbol:rfbB "dTDP-glucose 4,6-dehydratase" species:99287
"Salmonella enterica subsp. enterica serovar Typhimurium str. LT2"
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=ISS]
[GO:0009103 "lipopolysaccharide biosynthetic process" evidence=ISS]
[GO:0045226 "extracellular polysaccharide biosynthetic process"
evidence=ISS] [GO:0070404 "NADH binding" evidence=IDA]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
UniPathway:UPA00124 UniPathway:UPA00281 InterPro:IPR016040
Gene3D:3.40.50.720 EMBL:AE006468 EMBL:X56793
GenomeReviews:AE006468_GR GO:GO:0009103 GO:GO:0070404 GO:GO:0045226
GO:GO:0009243 GO:GO:0008460 TIGRFAMs:TIGR01181 eggNOG:COG1088
GO:GO:0019305 HOGENOM:HOG000168006 KO:K01710 ProtClustDB:PRK10084
PANTHER:PTHR10366:SF41 OMA:AKKAFRF PIR:S15299 RefSeq:NP_461042.1
PDB:1G1A PDB:1KEU PDB:1KEW PDBsum:1G1A PDBsum:1KEU PDBsum:1KEW
ProteinModelPortal:P26391 SMR:P26391 PRIDE:P26391 GeneID:1253618
KEGG:stm:STM2097 PATRIC:32382777 EvolutionaryTrace:P26391
Uniprot:P26391
Length = 361
Score = 130 (50.8 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 54/188 (28%), Positives = 82/188 (43%)
Query: 98 YGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTC- 156
+ D+ DS+ + +I QP V +LAA+SHV S E + VGT LL+ +
Sbjct: 56 HADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYW 115
Query: 157 -----KFHHQVKFYQASTSELYGKV-----VET----PQ-TETTPFYPRSPYACAKLYAY 201
+ +F+ ST E+YG + VE P TETT + P SPY+ +K +
Sbjct: 116 SALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSD 175
Query: 202 WIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKR 261
+V +R Y + I+ N S G K+ V +L G D R
Sbjct: 176 HLVRAWRRTYGLPT---IVTNC-SNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIR 231
Query: 262 DWGHAKDY 269
DW + +D+
Sbjct: 232 DWLYVEDH 239
>UNIPROTKB|O95455 [details] [associations]
symbol:TGDS "dTDP-D-glucose 4,6-dehydratase" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0050662 "coenzyme binding" evidence=IEA] [GO:0008460
"dTDP-glucose 4,6-dehydratase activity" evidence=IEA]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0009225 EMBL:AL359708 GO:GO:0008460 eggNOG:COG1088
HOGENOM:HOG000168006 KO:K01710 PANTHER:PTHR10366:SF41 OMA:GFIASHM
CTD:23483 HOVERGEN:HBG007741 OrthoDB:EOG4PVP08 EMBL:AJ006068
EMBL:AF048686 EMBL:AL139318 EMBL:BC033675 IPI:IPI00003774
RefSeq:NP_055120.1 UniGene:Hs.12393 ProteinModelPortal:O95455
SMR:O95455 IntAct:O95455 MINT:MINT-4773441 STRING:O95455
PhosphoSite:O95455 PRIDE:O95455 DNASU:23483 Ensembl:ENST00000261296
GeneID:23483 KEGG:hsa:23483 UCSC:uc001vlw.3 GeneCards:GC13M095226
HGNC:HGNC:20324 HPA:HPA039927 HPA:HPA040857 neXtProt:NX_O95455
PharmGKB:PA128395791 InParanoid:O95455 PhylomeDB:O95455
GenomeRNAi:23483 NextBio:45843 ArrayExpress:O95455 Bgee:O95455
CleanEx:HS_TGDS Genevestigator:O95455 GermOnline:ENSG00000088451
Uniprot:O95455
Length = 350
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 39/118 (33%), Positives = 60/118 (50%)
Query: 95 KLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMS-EYTAEVDAVGTLRLLDAI 153
K GD+ DS + + + + V + AAQ+HV +SF + E+T V+ GT L+ A
Sbjct: 71 KFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTY-VNVYGTHVLVSAA 129
Query: 154 KTCKFHHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAY 211
+ KF ST E+YG ++ E++P P +PYA +K A V +Y E Y
Sbjct: 130 HEARVE---KFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQY 184
>UNIPROTKB|A6QLW2 [details] [associations]
symbol:TGDS "dTDP-D-glucose 4,6-dehydratase" species:9913
"Bos taurus" [GO:0008460 "dTDP-glucose 4,6-dehydratase activity"
evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225
GeneTree:ENSGT00530000063128 GO:GO:0008460 eggNOG:COG1088
HOGENOM:HOG000168006 KO:K01710 PANTHER:PTHR10366:SF41 OMA:GFIASHM
EMBL:BC148106 IPI:IPI00704940 RefSeq:NP_001094629.1
UniGene:Bt.41863 ProteinModelPortal:A6QLW2 STRING:A6QLW2
Ensembl:ENSBTAT00000006984 GeneID:534594 KEGG:bta:534594 CTD:23483
HOVERGEN:HBG007741 InParanoid:A6QLW2 OrthoDB:EOG4PVP08
NextBio:20876459 Uniprot:A6QLW2
Length = 355
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 39/118 (33%), Positives = 60/118 (50%)
Query: 95 KLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMS-EYTAEVDAVGTLRLLDAI 153
K GD+ DS + + + + V + AAQ+HV +SF + E+T V+ GT L+ A
Sbjct: 71 KFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTY-VNVYGTHVLVSAA 129
Query: 154 KTCKFHHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAY 211
+ KF ST E+YG ++ E++P P +PYA +K A V +Y E Y
Sbjct: 130 HEARVE---KFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQY 184
>UNIPROTKB|Q489C2 [details] [associations]
symbol:CPS_0592 "Capsular polysaccharide biosynthesis
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0016857
"racemase and epimerase activity, acting on carbohydrates and
derivatives" evidence=ISS] [GO:0045227 "capsule polysaccharide
biosynthetic process" evidence=ISS] InterPro:IPR001509
InterPro:IPR008089 Pfam:PF01370 PRINTS:PR01713 InterPro:IPR016040
eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0045227 GO:GO:0016857
HOGENOM:HOG000168000 KO:K08679 OMA:NTAMPFS RefSeq:YP_267342.1
ProteinModelPortal:Q489C2 STRING:Q489C2 GeneID:3519977
KEGG:cps:CPS_0592 PATRIC:21464513 ProtClustDB:CLSK2396596
BioCyc:CPSY167879:GI48-679-MONOMER Uniprot:Q489C2
Length = 334
Score = 127 (49.8 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 61/226 (26%), Positives = 105/226 (46%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGS-MKLHYGDMTDSSCLV 108
GS + E L + G++V GI + ++ Q + H S +K+ D+ D + +
Sbjct: 13 GSAVVERLCAAGHDVVGIDNINDYYDIALKQARLAR-IEHASFSFIKM---DIADRNVMA 68
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK-FYQA 167
++ ++ Q +V +LAAQ+ V+ S + A+ + +G L +L+ C+ ++QVK A
Sbjct: 69 ELFTAQQFDKVVHLAAQAGVRYSIENPMAYADSNLIGHLNVLEG---CR-NNQVKHLIYA 124
Query: 168 STSELYGKVVETP-QTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
S+S +YG + P T+ T +P S YA K + +Y YN+ G+ F
Sbjct: 125 SSSSVYGLNNKVPFSTKDTVDHPVSLYAATKKSNELMAHSYSHLYNI-PTTGLRFFTVYG 183
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNL-DSKRDWGHAKDYVE 271
G + I KI G + + + N D RD+ H D VE
Sbjct: 184 SWGRPDMAPYIFTK--KILNG--DTIDINNNGDMWRDFTHVDDIVE 225
>TIGR_CMR|CPS_0592 [details] [associations]
symbol:CPS_0592 "capsular polysaccharide biosynthesis
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0016857
"racemase and epimerase activity, acting on carbohydrates and
derivatives" evidence=ISS] [GO:0045227 "capsule polysaccharide
biosynthetic process" evidence=ISS] InterPro:IPR001509
InterPro:IPR008089 Pfam:PF01370 PRINTS:PR01713 InterPro:IPR016040
eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0045227 GO:GO:0016857
HOGENOM:HOG000168000 KO:K08679 OMA:NTAMPFS RefSeq:YP_267342.1
ProteinModelPortal:Q489C2 STRING:Q489C2 GeneID:3519977
KEGG:cps:CPS_0592 PATRIC:21464513 ProtClustDB:CLSK2396596
BioCyc:CPSY167879:GI48-679-MONOMER Uniprot:Q489C2
Length = 334
Score = 127 (49.8 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 61/226 (26%), Positives = 105/226 (46%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGS-MKLHYGDMTDSSCLV 108
GS + E L + G++V GI + ++ Q + H S +K+ D+ D + +
Sbjct: 13 GSAVVERLCAAGHDVVGIDNINDYYDIALKQARLAR-IEHASFSFIKM---DIADRNVMA 68
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK-FYQA 167
++ ++ Q +V +LAAQ+ V+ S + A+ + +G L +L+ C+ ++QVK A
Sbjct: 69 ELFTAQQFDKVVHLAAQAGVRYSIENPMAYADSNLIGHLNVLEG---CR-NNQVKHLIYA 124
Query: 168 STSELYGKVVETP-QTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
S+S +YG + P T+ T +P S YA K + +Y YN+ G+ F
Sbjct: 125 SSSSVYGLNNKVPFSTKDTVDHPVSLYAATKKSNELMAHSYSHLYNI-PTTGLRFFTVYG 183
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNL-DSKRDWGHAKDYVE 271
G + I KI G + + + N D RD+ H D VE
Sbjct: 184 SWGRPDMAPYIFTK--KILNG--DTIDINNNGDMWRDFTHVDDIVE 225
>TAIR|locus:2202960 [details] [associations]
symbol:RHM1 "rhamnose biosynthesis 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA;ISS]
[GO:0008831 "dTDP-4-dehydrorhamnose reductase activity"
evidence=IEA] [GO:0009225 "nucleotide-sugar metabolic process"
evidence=ISS] [GO:0009507 "chloroplast" evidence=ISM] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0045226
"extracellular polysaccharide biosynthetic process" evidence=IEA]
[GO:0050662 "coenzyme binding" evidence=IEA] [GO:0010253
"UDP-rhamnose biosynthetic process" evidence=IDA;IMP] [GO:0050377
"UDP-glucose 4,6-dehydratase activity" evidence=IDA] [GO:0010280
"UDP-L-rhamnose synthase activity" evidence=IDA] [GO:0010315 "auxin
efflux" evidence=IMP] [GO:0051555 "flavonol biosynthetic process"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0009744 "response to sucrose
stimulus" evidence=RCA] [GO:0009813 "flavonoid biosynthetic
process" evidence=RCA] [GO:0010224 "response to UV-B" evidence=RCA]
InterPro:IPR001509 InterPro:IPR005888 InterPro:IPR005913
Pfam:PF01370 Pfam:PF04321 InterPro:IPR016040 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0009506 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0010315 EMBL:AC007260
GO:GO:0051555 eggNOG:COG1091 GO:GO:0008831 GO:GO:0045226
EMBL:AY042833 EMBL:AY081471 IPI:IPI00543019 PIR:C96814
RefSeq:NP_177978.1 UniGene:At.198 UniGene:At.71030
ProteinModelPortal:Q9SYM5 SMR:Q9SYM5 IntAct:Q9SYM5 STRING:Q9SYM5
PaxDb:Q9SYM5 PRIDE:Q9SYM5 EnsemblPlants:AT1G78570.1 GeneID:844193
KEGG:ath:AT1G78570 TAIR:At1g78570 HOGENOM:HOG000167988
InParanoid:Q9SYM5 KO:K12450 OMA:IKFVDNR PhylomeDB:Q9SYM5
ProtClustDB:PLN02260 BioCyc:ARA:AT1G78570-MONOMER
BioCyc:MetaCyc:AT1G78570-MONOMER Genevestigator:Q9SYM5
GO:GO:0008460 GO:GO:0050377 GO:GO:0010280 GO:GO:0010253
TIGRFAMs:TIGR01181 Uniprot:Q9SYM5
Length = 669
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 47/168 (27%), Positives = 80/168 (47%)
Query: 51 SYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQI 110
S++A LI + Y + I+ +++L NP+ H + K GD+ + + +
Sbjct: 20 SHVANRLI-RSYPDYKIVVLDKLDYCSNLKNL--NPSKH-SPNFKFVKGDIASADLVNHL 75
Query: 111 ISSVQPREVYNLAAQSHVKVSFDMS-EYTAEVDAVGTLRLLDAIKTCKFHHQVK-FYQAS 168
+ + + + AAQ+HV SF S E+T + GT LL+A CK Q++ F S
Sbjct: 76 LITEGIDTIMHFAAQTHVDNSFGNSFEFTKN-NIYGTHVLLEA---CKVTGQIRRFIHVS 131
Query: 169 TSELYGKVVETPQT---ETTPFYPRSPYACAKLYAYWIVVNYREAYNM 213
T E+YG+ E E + P +PY+ K A +V+ Y +Y +
Sbjct: 132 TDEVYGETDEDALVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 179
>UNIPROTKB|E2QWQ8 [details] [associations]
symbol:TGDS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050662 "coenzyme binding" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225
GeneTree:ENSGT00530000063128 GO:GO:0008460 KO:K01710
PANTHER:PTHR10366:SF41 OMA:GFIASHM CTD:23483 EMBL:AAEX03013308
RefSeq:XP_542640.3 Ensembl:ENSCAFT00000008577 GeneID:485521
KEGG:cfa:485521 Uniprot:E2QWQ8
Length = 355
Score = 124 (48.7 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 38/118 (32%), Positives = 60/118 (50%)
Query: 95 KLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMS-EYTAEVDAVGTLRLLDAI 153
K GD+ +S + + + + V + AAQ+HV +SF + E+T V+ GT L+ A
Sbjct: 71 KFIQGDICNSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTY-VNVYGTHVLVSAA 129
Query: 154 KTCKFHHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAY 211
+ KF ST E+YG ++ E++P P +PYA +K A V +Y E Y
Sbjct: 130 HEARVE---KFIYVSTDEVYGGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWERY 184
>UNIPROTKB|P37777 [details] [associations]
symbol:rfbB "dTDP-glucose 4,6-dehydratase" species:623
"Shigella flexneri" [GO:0008460 "dTDP-glucose 4,6-dehydratase
activity" evidence=ISS] [GO:0009103 "lipopolysaccharide
biosynthetic process" evidence=ISS] [GO:0045226 "extracellular
polysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
UniPathway:UPA00124 UniPathway:UPA00281 InterPro:IPR016040
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 EMBL:X71970
EMBL:AE005674 EMBL:AE014073 GenomeReviews:AE005674_GR
GenomeReviews:AE014073_GR GO:GO:0009103 GO:GO:0045226 GO:GO:0009243
GO:GO:0008460 TIGRFAMs:TIGR01181 eggNOG:COG1088 GO:GO:0019305
HOGENOM:HOG000168006 KO:K01710 ProtClustDB:PRK10084
PANTHER:PTHR10366:SF41 OMA:AKKAFRF EMBL:L14842 PIR:S41534
RefSeq:NP_707936.1 RefSeq:NP_837663.1 ProteinModelPortal:P37777
SMR:P37777 EnsemblBacteria:EBESCT00000086479
EnsemblBacteria:EBESCT00000092444 GeneID:1025931 GeneID:1078528
KEGG:sfl:SF2104 KEGG:sfx:S2227 PATRIC:18705961 Uniprot:P37777
Length = 361
Score = 124 (48.7 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 49/188 (26%), Positives = 82/188 (43%)
Query: 98 YGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKT-- 155
+ D+ D+ + +I + QP V +LAA+SHV S E + VGT LL+A +
Sbjct: 56 HADICDAVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYW 115
Query: 156 CKFHHQVK----FYQASTSELYGKVVETPQ----------TETTPFYPRSPYACAKLYAY 201
+ + K F+ ST E+YG + + TETT + P SPY+ +K +
Sbjct: 116 SALNDEKKKSFRFHHISTDEVYGDLPHPDEANNNEALPLFTETTAYAPSSPYSASKASSD 175
Query: 202 WIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKR 261
+V ++ Y + N+ P +F + I + G + G D R
Sbjct: 176 HLVRAWKRTYGLPTIVTNCSNNYGPY---HFPEKLIPLVILNALEGKALPIY-GKGDQIR 231
Query: 262 DWGHAKDY 269
DW + +D+
Sbjct: 232 DWLYVEDH 239
>TAIR|locus:2099372 [details] [associations]
symbol:RHM3 "rhamnose biosynthesis 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA;ISS]
[GO:0008831 "dTDP-4-dehydrorhamnose reductase activity"
evidence=IEA] [GO:0009225 "nucleotide-sugar metabolic process"
evidence=ISS] [GO:0009507 "chloroplast" evidence=ISM] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0045226
"extracellular polysaccharide biosynthetic process" evidence=IEA]
[GO:0050662 "coenzyme binding" evidence=IEA] [GO:0010280
"UDP-L-rhamnose synthase activity" evidence=ISS;IDA] [GO:0010253
"UDP-rhamnose biosynthetic process" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001509 InterPro:IPR005913 Pfam:PF01370 Pfam:PF04321
InterPro:IPR016040 GO:GO:0005829 GO:GO:0009506 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0016829 EMBL:AP002061 GO:GO:0008831
GO:GO:0045226 HOGENOM:HOG000167988 KO:K12450 ProtClustDB:PLN02260
GO:GO:0010280 GO:GO:0010253 eggNOG:COG1088 EMBL:AY078958
EMBL:AY142060 IPI:IPI00525100 RefSeq:NP_188097.1 UniGene:At.27812
ProteinModelPortal:Q9LH76 SMR:Q9LH76 IntAct:Q9LH76 STRING:Q9LH76
PaxDb:Q9LH76 PRIDE:Q9LH76 EnsemblPlants:AT3G14790.1 GeneID:820707
KEGG:ath:AT3G14790 TAIR:At3g14790 InParanoid:Q9LH76 OMA:TARMNNI
PhylomeDB:Q9LH76 Genevestigator:Q9LH76 GermOnline:AT3G14790
Uniprot:Q9LH76
Length = 664
Score = 127 (49.8 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 46/168 (27%), Positives = 80/168 (47%)
Query: 51 SYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQI 110
S++A L+ + Y + I+ +++L NP S + K GD+ + + +
Sbjct: 20 SHVANRLV-RSYPDYKIVVLDKLDYCSNLKNL--NP-SKSSPNFKFVKGDIASADLVNYL 75
Query: 111 ISSVQPREVYNLAAQSHVKVSFDMS-EYTAEVDAVGTLRLLDAIKTCKFHHQVK-FYQAS 168
+ + + + + AAQ+HV SF S E+T + GT LL+A CK Q++ F S
Sbjct: 76 LITEEIDTIMHFAAQTHVDNSFGNSFEFTKN-NIYGTHVLLEA---CKVTGQIRRFIHVS 131
Query: 169 TSELYGKVVETPQT---ETTPFYPRSPYACAKLYAYWIVVNYREAYNM 213
T E+YG+ E E + P +PY+ K A +V+ Y +Y +
Sbjct: 132 TDEVYGETDEDASVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 179
>UNIPROTKB|F1P029 [details] [associations]
symbol:TGDS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008460
"dTDP-glucose 4,6-dehydratase activity" evidence=IEA] [GO:0009225
"nucleotide-sugar metabolic process" evidence=IEA] [GO:0050662
"coenzyme binding" evidence=IEA] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225
GeneTree:ENSGT00530000063128 GO:GO:0008460 PANTHER:PTHR10366:SF41
OMA:GFIASHM EMBL:AADN02029320 IPI:IPI00594682
Ensembl:ENSGALT00000027315 Uniprot:F1P029
Length = 365
Score = 121 (47.7 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 38/118 (32%), Positives = 57/118 (48%)
Query: 95 KLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSF-DMSEYTAEVDAVGTLRLLDAI 153
K GD+ + + Q+ + + V + AAQ+HV +SF E+T V+ GT L+ A
Sbjct: 76 KFIQGDICEPHFIKQLFETEKIDIVLHFAAQTHVDLSFWHALEFTY-VNVYGTNVLVAAA 134
Query: 154 KTCKFHHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAY 211
KF ST E+YG + E++P P +PYA +K A V +Y E Y
Sbjct: 135 HEANVE---KFVYVSTDEVYGGSTDQEFDESSPKCPTNPYASSKAAAECFVQSYWERY 189
>UNIPROTKB|Q8E8H8 [details] [associations]
symbol:wcvA "UDP-glucuronate 4-epimerase WcvA"
species:211586 "Shewanella oneidensis MR-1" [GO:0009243 "O antigen
biosynthetic process" evidence=ISS] InterPro:IPR001509
InterPro:IPR008089 Pfam:PF01370 PRINTS:PR01713 InterPro:IPR016040
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 EMBL:AE014299
GenomeReviews:AE014299_GR HOGENOM:HOG000168000 KO:K08679
GO:GO:0050378 OMA:NTAMPFS GO:GO:0009243 HSSP:P27830
RefSeq:NP_720202.1 ProteinModelPortal:Q8E8H8 GeneID:1172268
KEGG:son:SO_4686 PATRIC:23529037 ProtClustDB:CLSK907767
Uniprot:Q8E8H8
Length = 335
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 55/225 (24%), Positives = 102/225 (45%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTG-RIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
G+ +++ L + G+EV GI + ++ ++ L A +KL D+ D +
Sbjct: 13 GANVSKRLCAMGHEVVGIDNLNDYYDVALKLARLAPLEALSNFHFIKL---DLADREGIA 69
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK-FYQA 167
++ + + V +LAAQ+ V+ S D A+ + VG L +L+ C+ HH+++ A
Sbjct: 70 KLFAQQGFQRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEG---CR-HHKIEHLVYA 125
Query: 168 STSELYGKVVETP-QTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
S+S +YG + P TE + +P S YA K + Y Y + F P
Sbjct: 126 SSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFFTVYGP 185
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
+ K T+++ ++ ++ G+L RD+ + D VE
Sbjct: 186 WGRPDMALFKFTKAI--LAGETIDVYNHGDLS--RDFTYIDDIVE 226
>TIGR_CMR|SO_4686 [details] [associations]
symbol:SO_4686 "NAD dependent epimerase/dehydratase family
protein" species:211586 "Shewanella oneidensis MR-1" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009225 "nucleotide-sugar
metabolic process" evidence=ISS] [GO:0009243 "O antigen
biosynthetic process" evidence=ISS] InterPro:IPR001509
InterPro:IPR008089 Pfam:PF01370 PRINTS:PR01713 InterPro:IPR016040
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 EMBL:AE014299
GenomeReviews:AE014299_GR HOGENOM:HOG000168000 KO:K08679
GO:GO:0050378 OMA:NTAMPFS GO:GO:0009243 HSSP:P27830
RefSeq:NP_720202.1 ProteinModelPortal:Q8E8H8 GeneID:1172268
KEGG:son:SO_4686 PATRIC:23529037 ProtClustDB:CLSK907767
Uniprot:Q8E8H8
Length = 335
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 55/225 (24%), Positives = 102/225 (45%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTG-RIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
G+ +++ L + G+EV GI + ++ ++ L A +KL D+ D +
Sbjct: 13 GANVSKRLCAMGHEVVGIDNLNDYYDVALKLARLAPLEALSNFHFIKL---DLADREGIA 69
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK-FYQA 167
++ + + V +LAAQ+ V+ S D A+ + VG L +L+ C+ HH+++ A
Sbjct: 70 KLFAQQGFQRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEG---CR-HHKIEHLVYA 125
Query: 168 STSELYGKVVETP-QTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
S+S +YG + P TE + +P S YA K + Y Y + F P
Sbjct: 126 SSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFFTVYGP 185
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
+ K T+++ ++ ++ G+L RD+ + D VE
Sbjct: 186 WGRPDMALFKFTKAI--LAGETIDVYNHGDLS--RDFTYIDDIVE 226
>ZFIN|ZDB-GENE-030131-5718 [details] [associations]
symbol:tgds "TDP-glucose 4,6-dehydratase"
species:7955 "Danio rerio" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0008460 "dTDP-glucose 4,6-dehydratase activity"
evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040
ZFIN:ZDB-GENE-030131-5718 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0009225 GO:GO:0008460 PANTHER:PTHR10366:SF41
HOVERGEN:HBG007741 HSSP:P26391 EMBL:BC066615 IPI:IPI00496965
UniGene:Dr.80538 ProteinModelPortal:Q6NYF5 Uniprot:Q6NYF5
Length = 347
Score = 118 (46.6 bits), Expect = 0.00019, P = 0.00019
Identities = 34/109 (31%), Positives = 53/109 (48%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKF 158
GD+ D + + S+ V++ AA++HV+ SF V+ GT L+ A
Sbjct: 64 GDVCDPLFIKHLFSTEHIDVVFHCAAETHVENSFVCPSRFMRVNVDGTAVLVRASLEASV 123
Query: 159 HHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNY 207
+F ST E+YG V+ P E +P P +PY+ +K A IV +Y
Sbjct: 124 Q---RFIYISTDEVYGDSVDQPFDELSPKRPTNPYSRSKAAAESIVTSY 169
>UNIPROTKB|P95780 [details] [associations]
symbol:rmlB "dTDP-glucose 4,6-dehydratase" species:210007
"Streptococcus mutans UA159" [GO:0008460 "dTDP-glucose
4,6-dehydratase activity" evidence=ISS] [GO:0045226 "extracellular
polysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
UniPathway:UPA00124 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009103 EMBL:AE014133
GenomeReviews:AE014133_GR GO:GO:0045226 GO:GO:0008460
TIGRFAMs:TIGR01181 eggNOG:COG1088 GO:GO:0019305 KO:K01710
PANTHER:PTHR10366:SF41 EMBL:D78182 RefSeq:NP_721810.1 PDB:1KEP
PDB:1KET PDBsum:1KEP PDBsum:1KET ProteinModelPortal:P95780
SMR:P95780 EnsemblBacteria:EBSTRT00000013418 GeneID:1028708
KEGG:smu:SMU_1457 PATRIC:19664935 OMA:HEDWWKA
ProtClustDB:CLSK877134 EvolutionaryTrace:P95780 Uniprot:P95780
Length = 348
Score = 118 (46.6 bits), Expect = 0.00019, P = 0.00019
Identities = 52/190 (27%), Positives = 88/190 (46%)
Query: 94 MKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSF-DMSEYTAEVDAVGTLRLLDA 152
++L GD+ DS + ++ + + + AA+SH S D S + + VGT LL+A
Sbjct: 56 VELVVGDIADSELVDKLAAKADA--IVHYAAESHNDNSLKDPSPFIY-TNFVGTYILLEA 112
Query: 153 IKTCKFHHQVKFYQASTSELYGKVV---------ETPQ---TETTPFYPRSPYACAKLYA 200
+ + ++F+ ST E+YG + E P T T + P SPY+ K +
Sbjct: 113 ARK----YDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETKYNPSSPYSSTKAAS 168
Query: 201 YWIVVNYREAYNMFACNGILFNHESPRRG-ENFVTRKITRSVAKISLGLMEYVQLGNLDS 259
IV + ++ + A N+ P + E F+ R+IT ++ I L Y + N+
Sbjct: 169 DLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILSGIKPKL--YGEGKNV-- 224
Query: 260 KRDWGHAKDY 269
RDW H D+
Sbjct: 225 -RDWIHTNDH 233
>DICTYBASE|DDB_G0279465 [details] [associations]
symbol:tgds "putative dTDP-D-glucose 4,6-dehydratase"
species:44689 "Dictyostelium discoideum" [GO:0050662 "coenzyme
binding" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0009225 "nucleotide-sugar metabolic process"
evidence=IEA] [GO:0008460 "dTDP-glucose 4,6-dehydratase activity"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016829 "lyase activity"
evidence=IEA] InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 dictyBase:DDB_G0279465 GO:GO:0000166
Gene3D:3.40.50.720 GenomeReviews:CM000152_GR GO:GO:0050662
GO:GO:0009225 EMBL:AAFI02000031 GO:GO:0008460 eggNOG:COG1088
HSSP:P27830 KO:K01710 PANTHER:PTHR10366:SF41 OMA:GFIASHM
RefSeq:XP_641641.1 ProteinModelPortal:Q54WS6 STRING:Q54WS6
EnsemblProtists:DDB0231748 GeneID:8622047 KEGG:ddi:DDB_G0279465
ProtClustDB:CLSZ2430684 Uniprot:Q54WS6
Length = 434
Score = 118 (46.6 bits), Expect = 0.00028, P = 0.00028
Identities = 40/134 (29%), Positives = 64/134 (47%)
Query: 91 EGSMKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLL 150
E + K + G++ DS L I + V +LAA +HV SF S E + +GT LL
Sbjct: 59 ELNFKFYKGNILDSELLENIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLL 118
Query: 151 DAIKTCKFHHQVKFYQASTSELYGK-VVET----------PQTETTPFYPRSPYACAKLY 199
+ TCK + KF ST E+YG ++E E + P +PY+ +K
Sbjct: 119 E---TCKNYKLKKFIYVSTDEVYGSGLIEDNDDNNNSINQSSNEKSILNPTNPYSASKAG 175
Query: 200 AYWIVVNYREAYNM 213
A +V +Y +++ +
Sbjct: 176 AEHLVQSYYKSFKL 189
>UNIPROTKB|Q4K5C5 [details] [associations]
symbol:PFL_5490 "NAD dependent epimerase/dehydratase family
protein" species:220664 "Pseudomonas protegens Pf-5" [GO:0000271
"polysaccharide biosynthetic process" evidence=ISS] [GO:0003824
"catalytic activity" evidence=ISS] InterPro:IPR001509 Pfam:PF01370
InterPro:IPR016040 GO:GO:0003824 eggNOG:COG0451 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0044237 GO:GO:0000271
HOGENOM:HOG000167992 RefSeq:YP_262558.1 ProteinModelPortal:Q4K5C5
STRING:Q4K5C5 GeneID:3479881 KEGG:pfl:PFL_5490 PATRIC:19880467
OMA:EPNPAND ProtClustDB:CLSK881263
BioCyc:PFLU220664:GIX8-5527-MONOMER Uniprot:Q4K5C5
Length = 311
Score = 109 (43.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 42/168 (25%), Positives = 74/168 (44%)
Query: 100 DMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFH 159
D+ D + L +++ V+P V +LAA S V + Y A V VGT LL+A+
Sbjct: 53 DICDLAALRRVVEEVEPEVVVHLAAISFVAHGEADAIYRANV--VGTRNLLEALAGLSRT 110
Query: 160 HQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGI 219
+ AS++ +YG E+ P + YA +KL ++ + +
Sbjct: 111 PRAVLL-ASSANVYGNAPVELIDESVSLAPANDYAVSKLAMEYMARLWMHRLPIVIARP- 168
Query: 220 LFNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAK 267
FN+ + +F+ KI + + ++LGNLD +RD+ +
Sbjct: 169 -FNYTGVGQASHFLIPKIVSHFQRRA----SVIELGNLDVERDFSDVR 211
Score = 43 (20.2 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 46 EAEDGSYLAEFLISKGYEVHG 66
E G Y+A+ L GYE+ G
Sbjct: 16 EGFTGRYVADELRRSGYEIFG 36
>TAIR|locus:2024902 [details] [associations]
symbol:MUM4 "MUCILAGE-MODIFIED 4" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA;ISS]
[GO:0008152 "metabolic process" evidence=ISS] [GO:0008831
"dTDP-4-dehydrorhamnose reductase activity" evidence=IEA]
[GO:0044237 "cellular metabolic process" evidence=IEA] [GO:0045226
"extracellular polysaccharide biosynthetic process" evidence=IEA]
[GO:0050662 "coenzyme binding" evidence=IEA] [GO:0010192 "mucilage
biosynthetic process" evidence=IMP] [GO:0010214 "seed coat
development" evidence=IMP] [GO:0010280 "UDP-L-rhamnose synthase
activity" evidence=ISS;IDA] [GO:0010253 "UDP-rhamnose biosynthetic
process" evidence=IDA] [GO:0010489
"UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity" evidence=TAS]
[GO:0010490 "UDP-4-keto-rhamnose-4-keto-reductase activity"
evidence=TAS] [GO:0050377 "UDP-glucose 4,6-dehydratase activity"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR001509 InterPro:IPR005888 InterPro:IPR005913
Pfam:PF01370 Pfam:PF04321 InterPro:IPR016040 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0010214 EMBL:AC018748
EMBL:AC024260 GO:GO:0010192 GO:GO:0008831 GO:GO:0045226
HOGENOM:HOG000167988 KO:K12450 ProtClustDB:PLN02260 GO:GO:0008460
GO:GO:0050377 GO:GO:0010280 GO:GO:0010253 TIGRFAMs:TIGR01181
EMBL:AJ565874 EMBL:AY328518 IPI:IPI00522138 PIR:B96575
RefSeq:NP_564633.2 UniGene:At.20215 ProteinModelPortal:Q9LPG6
SMR:Q9LPG6 STRING:Q9LPG6 PaxDb:Q9LPG6 PRIDE:Q9LPG6
EnsemblPlants:AT1G53500.1 GeneID:841785 KEGG:ath:AT1G53500
TAIR:At1g53500 eggNOG:COG1088 InParanoid:Q9LPG6 OMA:CESHKPE
PhylomeDB:Q9LPG6 BioCyc:MetaCyc:AT1G53500-MONOMER
Genevestigator:Q9LPG6 GermOnline:AT1G53500 GO:GO:0010489
GO:GO:0010490 Uniprot:Q9LPG6
Length = 667
Score = 118 (46.6 bits), Expect = 0.00051, P = 0.00051
Identities = 37/126 (29%), Positives = 60/126 (47%)
Query: 93 SMKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMS-EYTAEVDAVGTLRLLD 151
+ K GD+ + ++ + + + AAQ+HV SF S E+T + GT LL+
Sbjct: 60 NFKFVKGDIASDDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKN-NIYGTHVLLE 118
Query: 152 AIKTCKFHHQVK-FYQASTSELYGKVVETPQT---ETTPFYPRSPYACAKLYAYWIVVNY 207
A CK Q++ F ST E+YG+ E E + P +PY+ K A +V+ Y
Sbjct: 119 A---CKVTGQIRRFIHVSTDEVYGETDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAY 175
Query: 208 REAYNM 213
+Y +
Sbjct: 176 GRSYGL 181
>TAIR|locus:2123466 [details] [associations]
symbol:UGE5 "UDP-D-glucose/UDP-D-galactose 4-epimerase 5"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003978 "UDP-glucose 4-epimerase activity"
evidence=IEA;IDA] [GO:0005794 "Golgi apparatus" evidence=ISM]
[GO:0005975 "carbohydrate metabolic process" evidence=IEA]
[GO:0006012 "galactose metabolic process" evidence=IEA] [GO:0016857
"racemase and epimerase activity, acting on carbohydrates and
derivatives" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IPI]
InterPro:IPR001509 InterPro:IPR005886 InterPro:IPR008089
Pfam:PF01370 PRINTS:PR01713 UniPathway:UPA00214 InterPro:IPR016040
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006950 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0044237 eggNOG:COG1087
HOGENOM:HOG000168001 GO:GO:0003978 GO:GO:0006012 InterPro:IPR025308
PANTHER:PTHR10366:SF39 Pfam:PF13950 TIGRFAMs:TIGR01179 KO:K01784
EMBL:AL161518 ProtClustDB:PLN02240 EMBL:AF080118 EMBL:AL049525
EMBL:AY065354 EMBL:AY117180 EMBL:AY140073 EMBL:AY085528
IPI:IPI00540537 PIR:T01881 PIR:T04291 RefSeq:NP_192834.1
UniGene:At.48845 ProteinModelPortal:Q9SN58 SMR:Q9SN58 IntAct:Q9SN58
STRING:Q9SN58 PaxDb:Q9SN58 PRIDE:Q9SN58 EnsemblPlants:AT4G10960.1
GeneID:826696 KEGG:ath:AT4G10960 TAIR:At4g10960 InParanoid:Q9SN58
OMA:ADKAWNA PhylomeDB:Q9SN58 Genevestigator:Q9SN58 Uniprot:Q9SN58
Length = 351
Score = 114 (45.2 bits), Expect = 0.00054, P = 0.00054
Identities = 60/236 (25%), Positives = 100/236 (42%)
Query: 50 GSYLAEFLISKGYEVHGI--IRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
GS+ L+ GY V + + SS+ + R++ L A H E + H D+ D S L
Sbjct: 16 GSHTVLQLLLGGYSVVVVDNLDNSSAVSLQRVKKL---AAEHGE-RLSFHQVDLRDRSAL 71
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
+I S + V + A V S + + VGT+ LL+ + H +
Sbjct: 72 EKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEVMAQ---HGCKNLVFS 128
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGIL----FN- 222
S++ +YG E P TE P +PY KL+ I R+ Y I+ FN
Sbjct: 129 SSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEIC---RDVYGSDPEWKIILLRYFNP 185
Query: 223 ---HESPRRGEN--FVTRKITRSVAKISLGLMEYVQL-GNLDSKRDWGHAKDYVEV 272
H S GE+ + + V ++++G ++ + GN + +D +DY+ V
Sbjct: 186 VGAHPSGDIGEDPRGIPNNLMPFVQQVAVGRRPHLTVFGNDYNTKDGTGVRDYIHV 241
>UNIPROTKB|Q6A1A4 [details] [associations]
symbol:galE "UDP-galactose 4-epimerase" species:644
"Aeromonas hydrophila" [GO:0003978 "UDP-glucose 4-epimerase
activity" evidence=IDA] [GO:0006012 "galactose metabolic process"
evidence=IC] [GO:0042803 "protein homodimerization activity"
evidence=IDA] InterPro:IPR001509 InterPro:IPR005886 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0044237 GO:GO:0003978 GO:GO:0006012 InterPro:IPR025308
PANTHER:PTHR10366:SF39 Pfam:PF13950 TIGRFAMs:TIGR01179
EMBL:AJ785765 ProteinModelPortal:Q6A1A4 SMR:Q6A1A4 Uniprot:Q6A1A4
Length = 338
Score = 113 (44.8 bits), Expect = 0.00066, P = 0.00066
Identities = 51/215 (23%), Positives = 100/215 (46%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHV--KVSFDMSEYTAEVDAVGTLRLLDAIKTC 156
GD+ + + + +I+ V + A V V+ + Y V+ GTLRL+ A++
Sbjct: 57 GDIRNEALMTEILHDHAIETVIHFAGLKAVGESVAKPLEYYDNNVN--GTLRLISAMRAA 114
Query: 157 KFHHQVKFYQASTSELYGKVVETPQTETTPF-YPRSPYACAKLYAYWIVVNYREAYNMFA 215
+ F +S++ +YG + P E+ P P+SPY +KL I+ + ++A ++
Sbjct: 115 NVKN---FIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPEWS 171
Query: 216 CNGI-LFN----HESPRRGEN--FVTRKITRSVAKISLGLMEYVQL-GN------LDSKR 261
+ FN H S GE+ + + +A++++G + + + GN + R
Sbjct: 172 IALLRYFNPVGAHPSGDMGEDPQGIPNNLIPYIAQVAVGRRDSLAIFGNDYPPEDATAVR 231
Query: 262 DWGHAKDYVE--VSSFERIEWRDFVHTYRLYRDIG 294
D+ H D + V++ +++ + VH Y L IG
Sbjct: 232 DYIHVMDLADGHVAAMQQLADKPGVHIYNLGAGIG 266
>TIGR_CMR|CHY_0545 [details] [associations]
symbol:CHY_0545 "UDP-glucose 4-epimerase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003978 "UDP-glucose
4-epimerase activity" evidence=ISS] [GO:0006012 "galactose
metabolic process" evidence=ISS] InterPro:IPR001509
InterPro:IPR005886 Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0044237 eggNOG:COG1087
HOGENOM:HOG000168001 GO:GO:0003978 GO:GO:0006012 InterPro:IPR025308
PANTHER:PTHR10366:SF39 Pfam:PF13950 TIGRFAMs:TIGR01179 KO:K01784
RefSeq:YP_359403.1 ProteinModelPortal:Q3AEN1 SMR:Q3AEN1
STRING:Q3AEN1 GeneID:3728483 KEGG:chy:CHY_0545 PATRIC:21274237
OMA:DTEDGSC BioCyc:CHYD246194:GJCN-546-MONOMER Uniprot:Q3AEN1
Length = 327
Score = 112 (44.5 bits), Expect = 0.00081, P = 0.00081
Identities = 55/202 (27%), Positives = 84/202 (41%)
Query: 79 IQHLYSNPASHVEGSMKLHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYT 138
+ +L V+ KL GD D + L++I + V ++AAQS V S E
Sbjct: 29 VDNLSKGHKKAVDTRAKLIVGDFGDENLLLEIFKKYDIKAVIHMAAQSLVGESMSQPEKY 88
Query: 139 AEVDAVGTLRLLDAIKTCKFHHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKL 198
E + TL LL + V F +ST+ +YG+ + P TE P P + Y +KL
Sbjct: 89 FEENISKTLSLLKVMLKANVKKMV-F--SSTAAVYGEPEKWPITEDFPQKPTNVYGYSKL 145
Query: 199 YAYWIVVNYREAYNMFACNGILFN----HESPRRGE--NFVTRKITRSVAKISLGLMEYV 252
+ YR+ + + FN S GE N T I + K+ LG E +
Sbjct: 146 VIEQCLEWYRQIHGFNYVSLRYFNAAGADPSGDIGEDHNPETHLIPL-IFKVILGEQEEL 204
Query: 253 QLGNLDSKRDWGHA-KDYVEVS 273
+ D G +DY+ V+
Sbjct: 205 TVFGTDYPTPDGTCIRDYIHVN 226
>TAIR|locus:2204639 [details] [associations]
symbol:MUR4 "MURUS 4" species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA;ISS] [GO:0003978 "UDP-glucose
4-epimerase activity" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=ISM;IDA] [GO:0006012 "galactose metabolic process"
evidence=IEA] [GO:0009225 "nucleotide-sugar metabolic process"
evidence=ISS] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
[GO:0019567 "arabinose biosynthetic process" evidence=IMP]
[GO:0050373 "UDP-arabinose 4-epimerase activity" evidence=IDA]
[GO:0009723 "response to ethylene stimulus" evidence=RCA]
[GO:0009738 "abscisic acid mediated signaling pathway"
evidence=RCA] [GO:0035556 "intracellular signal transduction"
evidence=RCA] [GO:0052542 "defense response by callose deposition"
evidence=RCA] [GO:0009832 "plant-type cell wall biogenesis"
evidence=IMP] InterPro:IPR001509 InterPro:IPR005886 Pfam:PF01370
UniPathway:UPA00797 UniPathway:UPA00963 InterPro:IPR016040
GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005794
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0032580
GO:GO:0045227 GO:GO:0009832 EMBL:AY195742 EMBL:AF083751
EMBL:AC007060 EMBL:AY064973 EMBL:BT002614 EMBL:AF325108
EMBL:AK220800 IPI:IPI00521995 PIR:E86431 RefSeq:NP_001031118.1
RefSeq:NP_174350.2 UniGene:At.20201 ProteinModelPortal:Q9SA77
SMR:Q9SA77 STRING:Q9SA77 PaxDb:Q9SA77 PRIDE:Q9SA77
EnsemblPlants:AT1G30620.1 EnsemblPlants:AT1G30620.2 GeneID:839942
KEGG:ath:AT1G30620 TAIR:At1g30620 eggNOG:COG1087
HOGENOM:HOG000168001 InParanoid:Q9SA77 KO:K12448 OMA:SHPNGYN
PhylomeDB:Q9SA77 ProtClustDB:CLSN2686084
BioCyc:MetaCyc:AT1G30620-MONOMER Genevestigator:Q9SA77
GermOnline:AT1G30620 GO:GO:0050373 GO:GO:0003978 GO:GO:0019567
GO:GO:0006012 GO:GO:0033358 InterPro:IPR025308
PANTHER:PTHR10366:SF39 Pfam:PF13950 TIGRFAMs:TIGR01179
Uniprot:Q9SA77
Length = 419
Score = 113 (44.8 bits), Expect = 0.00095, P = 0.00094
Identities = 65/241 (26%), Positives = 104/241 (43%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRI---QHLYSNPASHVEGSMKLHYGDMTDSSC 106
GS+ A L+ + Y V I+ S N + Q L+ P G ++ Y D+ D+
Sbjct: 83 GSHAALRLLKESYRVT-IVDNLSRGNLAAVRILQELFPEP-----GRLQFIYADLGDAKA 136
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMS-EYTAEVDAVGTLRLLDAIKTCKFHHQVK-F 164
+ +I + V + AA ++V S +Y + + TL +L+ + H VK
Sbjct: 137 VNKIFTENAFDAVMHFAAVAYVGESTQFPLKYYHNITS-NTLVVLETMAA----HGVKTL 191
Query: 165 YQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFN-- 222
+ST YG+ P TE TP P +PY AK A I++++ + +M FN
Sbjct: 192 IYSSTCATYGEPDIMPITEETPQVPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVI 251
Query: 223 HESP--RRGENFVTRKITRSVAKIS-------LGLMEYVQLGNLDSKR-DWGHAKDYVEV 272
P R GE R R +IS G+M +Q+ D K D +DY++V
Sbjct: 252 GSDPEGRLGE--APRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADGTCVRDYIDV 309
Query: 273 S 273
+
Sbjct: 310 T 310
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 306 306 0.00099 115 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 84
No. of states in DFA: 609 (65 KB)
Total size of DFA: 226 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 24.62u 0.08s 24.70t Elapsed: 00:00:24
Total cpu time: 24.64u 0.08s 24.72t Elapsed: 00:00:26
Start: Thu Aug 15 12:32:35 2013 End: Thu Aug 15 12:33:01 2013