RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15786
(306 letters)
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium,
rossman-fold, short-chain dehydrogenase/reductase, SDR,
structural genomics,lyase; HET: NDP GDP; 1.84A {Homo
sapiens} SCOP: c.2.1.2
Length = 375
Score = 481 bits (1241), Expect = e-172
Identities = 177/223 (79%), Positives = 200/223 (89%)
Query: 49 DGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+CLV
Sbjct: 36 DGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLV 95
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDA+KTC + VKFYQAS
Sbjct: 96 KIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS 155
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRR 228
TSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPRR
Sbjct: 156 TSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRR 215
Query: 229 GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
G NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE
Sbjct: 216 GANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVE 258
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A
{Escherichia coli} SCOP: c.2.1.2
Length = 372
Score = 479 bits (1234), Expect = e-171
Identities = 152/223 (68%), Positives = 178/223 (79%), Gaps = 1/223 (0%)
Query: 49 DGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
DGSYLAEFL+ KGYEVHGI RR+SSFNT R+ H+Y +P + LHYGD++D+S L
Sbjct: 13 DGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTC-NPKFHLHYGDLSDTSNLT 71
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+I+ VQP EVYNL A SHV VSF+ EYTA+VDA+GTLRLL+AI+ + +FYQAS
Sbjct: 72 RILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS 131
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRR 228
TSELYG V E PQ ETTPFYPRSPYA AKLYAYWI VNYRE+Y M+ACNGILFNHESPRR
Sbjct: 132 TSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRR 191
Query: 229 GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
GE FVTRKITR++A I+ GL + LGN+DS RDWGHAKDYV+
Sbjct: 192 GETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVK 234
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase,
lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A
{Aquifex aeolicus} PDB: 2z95_A*
Length = 345
Score = 468 bits (1207), Expect = e-168
Identities = 131/223 (58%), Positives = 165/223 (73%), Gaps = 8/223 (3%)
Query: 49 DGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
DG+YLA+ L+ KGYEV+G RRS F + R++ L +K+ + D+ + S ++
Sbjct: 15 DGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIEN------DVKIIHMDLLEFSNII 68
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+ I VQP EVYNLAAQS V VSF+ TAEVDA+G LR+L+A++T K KFYQAS
Sbjct: 69 RTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVK--PDTKFYQAS 126
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRR 228
TSE++GKV E PQTE TPFYPRSPYA AKL+ +WI VNYREAYNMFAC+GILFNHESP R
Sbjct: 127 TSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLR 186
Query: 229 GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
G FVTRKIT S+A+I GL + + LGNL++KRDWG+A +YVE
Sbjct: 187 GIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVE 229
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain
dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Length = 381
Score = 466 bits (1201), Expect = e-166
Identities = 138/225 (61%), Positives = 173/225 (76%), Gaps = 3/225 (1%)
Query: 49 DGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
DGSYL EFL+ KGYEVHG+IRRSS+FNT RI H+Y +P + + MKLHY D+TD+S L
Sbjct: 40 DGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLR 99
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCK--FHHQVKFYQ 166
+ I ++P EVYNLAAQSHV VSF++ +YTA+V A G LRLL+A+++ VK+YQ
Sbjct: 100 RWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQ 159
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
A +SE++G PQ+ETTPF+PRSPYA +K A+W VNYREAY +FACNGILFNHESP
Sbjct: 160 AGSSEMFGST-PPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESP 218
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
RRGENFVTRKITR++ +I +GL + LGNL + RDWG A DYVE
Sbjct: 219 RRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVE 263
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase,
rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas
aeruginosa} SCOP: c.2.1.2
Length = 335
Score = 463 bits (1194), Expect = e-166
Identities = 110/223 (49%), Positives = 147/223 (65%), Gaps = 8/223 (3%)
Query: 49 DGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
DG+YLA+ L+ KGY VHG++ R SS R++ L ++ GDM D+ +
Sbjct: 26 DGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEG------DIQYEDGDMADACSVQ 79
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+ + QP+EVYNLAAQS V S++ T VD +G LL+AI+ + +FYQAS
Sbjct: 80 RAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSP--ETRFYQAS 137
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRR 228
TSE++G + Q E TPFYPRSPY AKLY +WI VNYRE++ + A +GILFNHESP R
Sbjct: 138 TSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLR 197
Query: 229 GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
G FVTRK+T +VA+I LG + ++LGN+D+KRDWG A DYVE
Sbjct: 198 GIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVE 240
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 406 bits (1047), Expect = e-144
Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 21/226 (9%)
Query: 49 DGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
G YLA L + EV G R + + ++ ++ + D+ DS +
Sbjct: 24 VGKYLANHLTEQNVEVFGTSRNNEA----KLPNVE------------MISLDIMDSQRVK 67
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
++IS ++P +++LAA+S VK S+ + T + GTL +LDA++ +
Sbjct: 68 KVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSN--LDCRILTIG 125
Query: 169 TSELYGKVV--ETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESP 226
+SE YG ++ E+P +E P SPY +K + Y +AY M + FNH P
Sbjct: 126 SSEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGP 185
Query: 227 RRGENFVTRKITRSVAKISLGLME-YVQLGNLDSKRDWGHAKDYVE 271
+ FVT+ + + I + E +++GNL++ RD+ +D V+
Sbjct: 186 GQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQ 231
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 101 bits (253), Expect = 6e-25
Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 29/193 (15%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS+L + L+ GYEV + + ++GR V S +LH D+ D S
Sbjct: 13 GSHLVDKLVELGYEVVVV----DNLSSGR--------REFVNPSAELHVRDLKDYS---- 56
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK-FYQAS 168
+ ++ V++ AA V++S + V T +L+ + V+ AS
Sbjct: 57 WGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWAR----QTGVRTVVFAS 112
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGIL--FN---- 222
+S +YG P E P+ P S Y AK + Y + + + N
Sbjct: 113 SSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCL--AVRYANVVGP 170
Query: 223 HESPRRGENFVTR 235
+F+ +
Sbjct: 171 RLRHGVIYDFIMK 183
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 98.8 bits (247), Expect = 4e-24
Identities = 50/225 (22%), Positives = 84/225 (37%), Gaps = 29/225 (12%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGS-MKLHYGDMTDSSCLV 108
G +LA L++ G EV + + +E ++L D++D
Sbjct: 20 GGHLARALVASGEEVTVL----DDLRVPPMIPP-EGTGKFLEKPVLELEERDLSD----- 69
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
R VY+LA+ V SF + LL C K S
Sbjct: 70 -------VRLVYHLASHKSVPRSFKQPLDYLDN-VDSGRHLLAL---CTSVGVPKVVVGS 118
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGIL--FNHESP 226
T E+YG+ P E +P PRSPYA +K+ + ++ A GI+ FN P
Sbjct: 119 TCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAP-EVGIVRFFNVYGP 177
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
+ + ++ ++ E G+ + +RD+ + D V+
Sbjct: 178 GERPDALVPRLCANLLT---R-NELPVEGDGEQRRDFTYITDVVD 218
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 97.6 bits (244), Expect = 9e-24
Identities = 39/224 (17%), Positives = 67/224 (29%), Gaps = 33/224 (14%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G Y+ E + + G + R + + Y + D T + Q
Sbjct: 15 GQYVVESIKNDGNTPIILTR----SIGNKAINDY-----------EYRVSDYTLEDLINQ 59
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK-FYQAS 168
+ V +LAA + + + T L DA + + AS
Sbjct: 60 L---NDVDAVVHLAATRGSQGKIS----EFHDNEILTQNLYDACY----ENNISNIVYAS 108
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGI-LFNHESPR 227
T Y P E P Y +KL I Y + + +
Sbjct: 109 TISAYSDETSLPWNEKELPLPDLMYGVSKLACEHIGNIYSRKKGL-CIKNLRFAHLYGFN 167
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
N++ I R + G + N +KR++ +AKD +
Sbjct: 168 EKNNYM---INRFFRQAFHGE-QLTLHANSVAKREFLYAKDAAK 207
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 97.3 bits (243), Expect = 2e-23
Identities = 40/168 (23%), Positives = 63/168 (37%), Gaps = 14/168 (8%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGR---IQHLYSNPASHVEGSMKLHYGDMTDSSC 106
GS L E L+ +V G+ +F TG + + S + + K GD+ +
Sbjct: 40 GSNLLETLLKLDQKVVGL----DNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDD 95
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK-FY 165
+ V V + AA V S + + + G L +L A + +V+ F
Sbjct: 96 CNNACAGVD--YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAAR----DAKVQSFT 149
Query: 166 QASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNM 213
A++S YG P+ E T P SPYA K + Y
Sbjct: 150 YAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYGF 197
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 88.9 bits (221), Expect = 2e-20
Identities = 45/172 (26%), Positives = 67/172 (38%), Gaps = 22/172 (12%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGR---IQHLYSNPASHVEGSMKLHYGDMTDSSC 106
GS L E L+ V G+ +F+TG + + + ++ GD+ D +
Sbjct: 38 GSNLLEKLLKLNQVVIGL----DNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 93
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK-FY 165
Q++ V V + AA V S T + G L +L A K + QV+ F
Sbjct: 94 CEQVMKGVD--HVLHQAALGSVPRSIVDPITTNATNITGFLNILHA---AK-NAQVQSFT 147
Query: 166 QASTSELYGKVVETPQTETTPFYPRSPYACAK----LYAYWIVVNYREAYNM 213
A++S YG P+ E P SPYA K +YA Y Y
Sbjct: 148 YAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQ----VYARTYGF 195
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 88.9 bits (221), Expect = 3e-20
Identities = 30/172 (17%), Positives = 66/172 (38%), Gaps = 23/172 (13%)
Query: 50 GSYLAEFLISKGY-EVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
GS L + L+ G +VH + + + ++ +P +++ +TD + L
Sbjct: 45 GSNLVKRLLELGVNQVHVV----DNLLSAEKINVPDHP------AVRFSETSITDDALLA 94
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK--FYQ 166
+ V++LA + S E + + TL+L + K ++K Y
Sbjct: 95 SLQDEYD--YVFHLATYHGNQSSIHDPLADHENNTLTTLKLYER---LKHFKRLKKVVYS 149
Query: 167 ASTSELYGKVVETPQTETT-----PFYPRSPYACAKLYAYWIVVNYREAYNM 213
A+ + K + + SPY+ +K++ + V Y + + +
Sbjct: 150 AAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQL 201
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 86.9 bits (216), Expect = 9e-20
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 24/160 (15%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS++AE L+ +G +V GI +F TGR +HL +P + G + D + + Q
Sbjct: 34 GSHIAELLLERGDKVVGI----DNFATGRREHLKDHPN------LTFVEGSIADHALVNQ 83
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK-FYQAS 168
+I +QP V + AA + + VG ++ A K + V F
Sbjct: 84 LIGDLQPDAVVHTAASYKDPDDW---YNDTLTNCVGGSNVVQA---AK-KNNVGRFVYFQ 136
Query: 169 TSELYG-KVVETPQTETTPFYP-RSPYACAKL----YAYW 202
T+ YG K ++ P P P S YA +K Y +
Sbjct: 137 TALCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDYLEY 176
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 86.0 bits (214), Expect = 2e-19
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 23/169 (13%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS++ E L+++G EV + + TG+ +V + D+ D + +
Sbjct: 13 GSHIVEDLLARGLEVAVL----DNLATGK--------RENVPKGVPFFRVDLRDKEGVER 60
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK---FYQ 166
+P V + AAQ+ VKVS + EV+ +G L LL+A + + V+ F
Sbjct: 61 AFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACR----QYGVEKLVF-- 114
Query: 167 ASTSE-LYGKVVET-PQTETTPFYPRSPYACAKLYAYWIVVNYREAYNM 213
AST +YG+V E ET P P+SPYA +K + Y ++Y +
Sbjct: 115 ASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGL 163
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 85.5 bits (212), Expect = 2e-19
Identities = 34/224 (15%), Positives = 73/224 (32%), Gaps = 22/224 (9%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G+ L +L K + + I S+ G +K D+++ + +
Sbjct: 12 GTELVPYLAEKYGKKNVIA---------------SDIVQRDTGGIKFITLDVSNRDEIDR 56
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
+ +++LA K +V+ GT +L+A K H K ST
Sbjct: 57 AVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEA---AKQHRVEKVVIPST 112
Query: 170 SELYG-KVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGI-LFNHESPR 227
++G + + T PR+ + K+ A + Y E + + + S +
Sbjct: 113 IGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGL-DVRSLRYPGIISYK 171
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
T + ++ +Y + + D ++
Sbjct: 172 AEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALK 215
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 84.9 bits (211), Expect = 3e-19
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 21/165 (12%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS++ + L + E+ I + ++G V + +L D+ +
Sbjct: 14 GSHVVDKLS-ESNEIVVI----DNLSSGN--------EEFVNEAARLVKADLAADD-IKD 59
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK-FYQAS 168
+ + EV+++AA V++ + + + + T RLL+A++ V S
Sbjct: 60 YLKGAE--EVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMR----KAGVSRIVFTS 113
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNM 213
TS +YG+ P E P +P S Y +KL ++ +Y ++M
Sbjct: 114 TSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYCHTFDM 158
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 83.0 bits (206), Expect = 3e-18
Identities = 40/196 (20%), Positives = 81/196 (41%), Gaps = 39/196 (19%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLY--SNPAS--HVEGSMKLHY--GDMTD 103
GS LA F +S+G ++ +L + + + GD+ +
Sbjct: 14 GSNLASFALSQGIDL---------IV---FDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 61
Query: 104 SSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK 163
+ + ++I+ P ++LA Q + S D E++ GTL LL+A++ +++
Sbjct: 62 KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVR--QYNSNCN 119
Query: 164 FYQASTSELYGKVVETPQ----------------TETTPFYPRSPYACAKLYAYWIVVNY 207
+ST+++YG + + E+T SPY C+K A +++Y
Sbjct: 120 IIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDY 179
Query: 208 REAYNMFACNGILFNH 223
+ + N ++F H
Sbjct: 180 ARIFGL---NTVVFRH 192
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 78.3 bits (194), Expect = 1e-16
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKF 158
G++ + L +I + + N AA+SHV S + + + +GT+ LL+ K
Sbjct: 82 GEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLEL---VKK 138
Query: 159 HHQVKFYQASTSELYGKVVETPQ-TETTPFYPRSPYACAKLYAYWIVVNYREAYNM 213
+ +K Q ST E+YG + +T + TE TP P SPY+ +K A I + Y + Y +
Sbjct: 139 YPHIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADMIALAYYKTYQL 194
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 76.3 bits (188), Expect = 6e-16
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 29/186 (15%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGR---IQHLYSNPASHVEGSMKLHYGDMTDSSC 106
GS+L + L+ G+EV + +F TGR ++H + + +L D+ +
Sbjct: 40 GSHLTDKLMMDGHEVTVV----DNFFTGRKRNVEHWIGHE------NFELINHDVVEP-- 87
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ 166
+ V ++Y+LA+ + T + + +GTL +L K +
Sbjct: 88 ---LYIEVD--QIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAK----RVGARLLL 138
Query: 167 ASTSELYGKVVETPQTET-----TPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILF 221
ASTSE+YG PQ+E P PR+ Y K A + Y + + +F
Sbjct: 139 ASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIF 198
Query: 222 NHESPR 227
N PR
Sbjct: 199 NTFGPR 204
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 74.8 bits (184), Expect = 2e-15
Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 22/167 (13%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G +L++ ++ + T R+ L + M GD+T + V+
Sbjct: 37 GHHLSKRILETTDWEVFGM----DMQTDRLGDLVKHE------RMHFFEGDITINKEWVE 86
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
+ + L A + E+D L ++ + + ST
Sbjct: 87 YHV-KKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAV----KYGKHLVFPST 141
Query: 170 SELYGKVV---ETPQTETTPF----YPRSPYACAKLYAYWIVVNYRE 209
SE+YG P + PR YAC+K ++ Y
Sbjct: 142 SEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGM 188
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 74.4 bits (184), Expect = 2e-15
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKF 158
GD+ D + +++ + V +LAA+SHV S E + +GT LL++I+ +
Sbjct: 61 GDVADYELVKELVR--KVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIR--RE 116
Query: 159 HHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAK 197
+ +V+F ST E+YG +++ TE P SPY+ K
Sbjct: 117 NPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATK 155
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 73.7 bits (182), Expect = 4e-15
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 85 NPAS--HVEGSMKLHY--GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAE 140
N A+ V+ +L + GD+ D+ L + + + + AA+SHV S + E
Sbjct: 44 NRANLAPVDADPRLRFVHGDIRDAGLLARELR--GVDAIVHFAAESHVDRSIAGASVFTE 101
Query: 141 VDAVGTLRLLDAIKTCKFHHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAK 197
+ GT LL + ST+++YG + TE++P P SPYA +K
Sbjct: 102 TNVQGTQTLLQC---AVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASK 155
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 73.2 bits (180), Expect = 7e-15
Identities = 25/172 (14%), Positives = 64/172 (37%), Gaps = 25/172 (14%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
S++A L +G+ V + + +H+ + + H D+ ++
Sbjct: 42 ASHIARRLKHEGHYVIAS-------DWKKNEHM-----TEDMFCDEFHLVDLRVMENCLK 89
Query: 110 IISSVQPREVYNLAAQ-SHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+ V V+NLAA + + + + +++A + + +F+ AS
Sbjct: 90 VTEGVD--HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEA---ARINGIKRFFYAS 144
Query: 169 TSELYGKVVETPQTETT-------PFYPRSPYACAKLYAYWIVVNYREAYNM 213
++ +Y + + T + P P+ + KL + +Y + + +
Sbjct: 145 SACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGI 196
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia
pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Length = 357
Score = 72.6 bits (178), Expect = 1e-14
Identities = 49/230 (21%), Positives = 85/230 (36%), Gaps = 25/230 (10%)
Query: 50 GSYLAEFLISKGYEVHGI----IRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSS 105
G +L+ +L + G V G S F + V M+ GD+ D +
Sbjct: 22 GGWLSLWLQTMGATVKGYSLTAPTVPSLFE-----------TARVADGMQSEIGDIRDQN 70
Query: 106 CLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFY 165
L++ I QP V+++AAQ V++S+ T + +GT+ LL+AI+ +
Sbjct: 71 KLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHV-GGVKAVVN 129
Query: 166 QASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHES 225
S K E PY+ +K A + +YR ++ A G +
Sbjct: 130 ITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVA 189
Query: 226 PRRGENFV-------TRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKD 268
R N + R + + + V + N + R W H +
Sbjct: 190 TVRAGNVIGGGDWALDRIVPDILRAFEQS--QPVIIRNPHAIRPWQHVLE 237
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 70.8 bits (174), Expect = 2e-14
Identities = 27/208 (12%), Positives = 55/208 (26%), Gaps = 34/208 (16%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G + E L + P + + D+ D++ +
Sbjct: 16 GRVMRERLAPMAEILRLADLS---------------PLDPAGPNEECVQCDLADANAVNA 60
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
+++ + +L S K F E + + +G L +A + H Q + AS+
Sbjct: 61 MVAGCD--GIVHLGGISVEK-PF---EQILQGNIIGLYNLYEA---ARAHGQPRIVFASS 111
Query: 170 SELYGKV-VETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRR 228
+ G P P Y +K + + Y + + + +
Sbjct: 112 NHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPN 171
Query: 229 GEN---------FVTRKITRSVAKISLG 247
I LG
Sbjct: 172 NYRMLSTWFSHDDFVSLIEAVFRAPVLG 199
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 71.7 bits (176), Expect = 2e-14
Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 24/186 (12%)
Query: 50 GSYLAEFLISKG-YEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
G++L E L+ + YEV+G+ + I ++P GD++ S +
Sbjct: 13 GNHLTERLLREDHYEVYGL----DIGSDA-ISRFLNHP------HFHFVEGDISIHSEWI 61
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+ + V L A + E+D LR++ ++ + S
Sbjct: 62 EYHVK-KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCV----KYRKRIIFPS 116
Query: 169 TSELYGKVVETPQTET-------TPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILF 221
TSE+YG + E PR Y+ +K ++ Y E + F
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPF 176
Query: 222 NHESPR 227
N PR
Sbjct: 177 NWMGPR 182
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 71.7 bits (176), Expect = 3e-14
Identities = 42/189 (22%), Positives = 66/189 (34%), Gaps = 25/189 (13%)
Query: 50 GSYLAEFLISKGYEVHGI-----------IRRSSSFNTGRIQHLYSNPASHVEGSMKLHY 98
G A L K YEV + + S I S + S++L+
Sbjct: 24 GWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYV 83
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSE---YTAEVDAVGTLRLLDAIKT 155
GD+ D L + S +P V + Q S YT + +GTL +L AIK
Sbjct: 84 GDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKE 143
Query: 156 CKFH-HQVK--------FYQASTSELYGKVVETPQTETTPF--YPRSPYACAKLYAYWIV 204
H VK E Y + +T+T P+ S Y +K++ +
Sbjct: 144 FGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNI 203
Query: 205 VNYREAYNM 213
+A+ +
Sbjct: 204 AFTCKAWGI 212
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 70.8 bits (174), Expect = 3e-14
Identities = 25/166 (15%), Positives = 54/166 (32%), Gaps = 19/166 (11%)
Query: 50 GSYLAEFLISK-GYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
G+ L + L G E +I +S + S P + D + +
Sbjct: 15 GTELTQKLRKLYGTEN--VI--ASDIRKLNTDVVNSGP---------FEVVNALDFNQIE 61
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
++ + ++Y +AA + + +++ +L+ K K + S
Sbjct: 62 HLVEVHKITDIYLMAALLSATAEKNPAFA-WDLNMNSLFHVLNL---AKAKKIKKIFWPS 117
Query: 169 TSELYGKVVETPQT-ETTPFYPRSPYACAKLYAYWIVVNYREAYNM 213
+ ++G T + T P + Y +K Y Y +
Sbjct: 118 SIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGV 163
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 69.7 bits (171), Expect = 5e-14
Identities = 25/166 (15%), Positives = 54/166 (32%), Gaps = 27/166 (16%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS + L + +EV + G E ++ D+ D+ +
Sbjct: 15 GSAIRPHLGTLAHEVRLSDI----VDLG-----------AAEAHEEIVACDLADAQAVHD 59
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK-FYQAS 168
++ + +L S V+ + + + +G L +A + + AS
Sbjct: 60 LVKDCD--GIIHLGGVS-VERPW---NDILQANIIGAYNLYEAAR----NLGKPRIVFAS 109
Query: 169 TSELYGKV-VETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNM 213
++ G T P P S Y +K + + Y +++
Sbjct: 110 SNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDI 155
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 69.5 bits (171), Expect = 1e-13
Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 22/152 (14%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS L E + +G+E+ I +F TG+ + L + + G +TD+ L +
Sbjct: 33 GSNLIEHWLPQGHEILVI----DNFATGKREVL------PPVAGLSVIEGSVTDAGLLER 82
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK---FYQ 166
S +P V + AA D +E A + G++ + A VK
Sbjct: 83 AFDSFKPTHVVHSAAAYKDPD--DWAED-AATNVQGSINVAKAAS----KAGVKRLLN-- 133
Query: 167 ASTSELYGKVVETPQTETTPFYPRSPYACAKL 198
T+ YG+ P +P P + Y +K
Sbjct: 134 FQTALCYGRPATVPIPIDSPTAPFTSYGISKT 165
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2
PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 69.1 bits (170), Expect = 1e-13
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKT--- 155
D+ DS+ + +I QP V +LAA+SHV S E + VGT LL+ +
Sbjct: 57 ADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWS 116
Query: 156 ---CKFHHQVKFYQASTSELYGKVVETPQ----------TETTPFYPRSPYACAK 197
+ +F+ ST E+YG + + TETT + P SPY+ +K
Sbjct: 117 ALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASK 171
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 67.6 bits (166), Expect = 4e-13
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKF 158
GD+ D+ + ++ + + + + AA+SH S + + +GT LL+A +
Sbjct: 61 GDIADAELVDKLAA--KADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAAR---- 114
Query: 159 HHQVKFYQASTSELYGKVVETPQ------------TETTPFYPRSPYACAK 197
+ ++F+ ST E+YG + T T + P SPY+ K
Sbjct: 115 KYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTK 165
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 66.3 bits (162), Expect = 2e-12
Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 15/167 (8%)
Query: 50 GSYLAEFLISKGYEVHGIIRR---SSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
G L + L+ G + + F + G++ D++
Sbjct: 27 GRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEA--------PAGFSGAVDARAADLSAPGE 78
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKT--CKFHHQVKF 164
+++ + +P +++LAA + D + ++ GT L DAI+ K ++ +
Sbjct: 79 AEKLVEA-RPDVIFHLAAIVSGEAELDFDKG-YRINLDGTRYLFDAIRIANGKDGYKPRV 136
Query: 165 YQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAY 211
S+ ++G + P + P + Y K ++ +Y
Sbjct: 137 VFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKAICELLLSDYSRRG 183
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 62.6 bits (153), Expect = 2e-11
Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 17/165 (10%)
Query: 50 GSYLAEFLISKGY-EVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
GS + + L KG ++ + + G + N + + + D
Sbjct: 12 GSNIVKALNDKGITDILVV----DNLKDG---TKFVNLV-DLNIADYMDKEDFLIQIMAG 63
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+ V+ +++ A S +Y + + + LL C ++ F AS
Sbjct: 64 EEFGDVE--AIFHEGACSSTTEW--DGKYMMDNNYQYSKELLHY---CL-EREIPFLYAS 115
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNM 213
++ YG P + Y +K V N
Sbjct: 116 SAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANS 160
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 63.1 bits (154), Expect = 2e-11
Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 17/165 (10%)
Query: 50 GSYLAEFLISKGY-EVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
GS + + L KG ++ + + G + N + + + D
Sbjct: 59 GSNIVKALNDKGITDILVV----DNLKDG---TKFVNLV-DLNIADYMDKEDFLIQIMAG 110
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+ V+ +++ A S +Y + + + LL C ++ F AS
Sbjct: 111 EEFGDVE--AIFHEGACSSTTEW--DGKYMMDNNYQYSKELLHY---CL-EREIPFLYAS 162
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNM 213
++ YG P + + +K V N
Sbjct: 163 SAATYGGRTSDFIESREYEKPLNVFGYSKFLFDEYVRQILPEANS 207
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 61.5 bits (150), Expect = 6e-11
Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 19/156 (12%)
Query: 50 GSYLAEFLISKG--YEVHGIIRRSSSFNTGRIQHL-----YSNPASHVEGSMKLHYGDMT 102
GS LA +V + F + + + + + ++ D+
Sbjct: 23 GSNLAFHFQENHPKAKVVVL----DKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADIN 78
Query: 103 DSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQV 162
+ ++ + + +++ AA S + E + + L LL+ + +
Sbjct: 79 NPL-DLRRLEKLHFDYLFHQAAVS--DTTMLNQELVMKTNYQAFLNLLEI---AR-SKKA 131
Query: 163 KFYQASTSELYGKVVETPQTETTPFYPRSPYACAKL 198
K AS++ +YG + P P + Y +KL
Sbjct: 132 KVIYASSAGVYGNT-KAPNVVGKNESPENVYGFSKL 166
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 58.5 bits (142), Expect = 5e-10
Identities = 27/158 (17%), Positives = 46/158 (29%), Gaps = 28/158 (17%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G + A + + G+++ I R SS R+ +L E +M D + L +
Sbjct: 26 GHHAARAIRAAGHDLVLIHRPSS--QIQRLAYL------EPE----CRVAEMLDHAGLER 73
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDA--VGTLRLLDAIKTCKFHHQVKF-YQ 166
+ + V A + EV + T A C + Y
Sbjct: 74 ALRGLD--GVIFSAG----YYPSRPRRWQEEVASALGQTNPFYAA---CLQARVPRILYV 124
Query: 167 ASTSELYGKVVETPQTETTPFYP----RSPYACAKLYA 200
S + P E + +S Y K
Sbjct: 125 GSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWAL 162
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 50.5 bits (122), Expect = 2e-07
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 31/192 (16%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS+ + L+ +G V ++ + +L + + K + GD+ D + L
Sbjct: 14 GSHAVKKLVDEGLSV--VV----------VDNLQTGHEDAITEGAKFYNGDLRDKAFLRD 61
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSE----YTAEVDAVGTLRLLDAIKTCKFHHQVKFY 165
+ + V + AA S V VS M + Y V G L LL+ + K + F
Sbjct: 62 VFTQENIEAVMHFAADSLVGVS--MEKPLQYYNNNV--YGALCLLEVMDEFKVDKFI-F- 115
Query: 166 QASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGIL--FN- 222
+ST+ YG+V TE T P + Y KL ++ Y +A N+ I FN
Sbjct: 116 -SSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQASNLRYK--IFRYFNV 172
Query: 223 ---HESPRRGEN 231
+ GE+
Sbjct: 173 AGATPNGIIGED 184
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 48.0 bits (114), Expect = 1e-06
Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 24/153 (15%)
Query: 119 VYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQASTSELYGKVVE 178
+ +LA + + + + + +LD + + S+S
Sbjct: 50 IVHLAGVN----RPEHDKEFSLGNVSYLDHVLDI---LTRNTKKPAILLSSSIQAT---- 98
Query: 179 TPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKIT 238
+PY +KL ++ Y E Y N N+ + I
Sbjct: 99 ----------QDNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNS-VIA 147
Query: 239 RSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
KI+ E +Q+ + + + + D V
Sbjct: 148 TFCYKIARN--EEIQVNDRNVELTLNYVDDIVA 178
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 1e-05
Identities = 39/277 (14%), Positives = 75/277 (27%), Gaps = 113/277 (40%)
Query: 8 GEFKNPFR--IHLYLESRTDLEYAVHKIRYRIKTLEDELEEAEDGSYLAEFLISKGYEVH 65
G + F LY + + +TL + + D AE + ++G +
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSA---ETLSELIRTTLD----AEKVFTQGLNIL 216
Query: 66 GIIRRSSSFNTGRIQHLYSNPAS----------------HVEGSMKLHYGDMTD-----S 104
+ S+ T +L S P S + G G++ +
Sbjct: 217 EWLENPSN--TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG---FTPGELRSYLKGAT 271
Query: 105 SCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKF 164
++++V A++ SF + + A + +L F V+
Sbjct: 272 GHSQGLVTAV-------AIAETDSWESF----FVSVRKA---ITVL-------FFIGVRC 310
Query: 165 YQA-STSELYGKVVE--TPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGI-- 219
Y+A + L ++E E P SP M + + +
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVP----SP--------------------MLSISNLTQ 346
Query: 220 -----------------------LFNHESPRRGENFV 233
L N + N V
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVN--GAK---NLV 378
Score = 35.4 bits (81), Expect = 0.022
Identities = 46/290 (15%), Positives = 76/290 (26%), Gaps = 116/290 (40%)
Query: 1 MDLLTSKGEFKNPF-RIHLYLE-----SRTDL------EYAVH-------KIRYRIKTLE 41
MDL + ++ + R + + S D+ +H +IR +
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 42 DELEEAEDGSYLAEFLISKGYEVHGIIRRSSSF-----------NTGRIQHLYSNPASHV 90
E DG E + + E S +F T Q PA
Sbjct: 1693 --FETIVDGKLKTEKIFKEINEHS----TSYTFRSEKGLLSATQFT---Q-----PAL-- 1736
Query: 91 EGSMKLHYGDMTDSSCLVQIISS--VQPREVYNLAAQSHVKVSFDMS--EYTAEVDAVGT 146
+ + S + P + A H S EY A
Sbjct: 1737 ----------TLMEKAAFEDLKSKGLIPADAT-FAG--H-------SLGEYAALASLADV 1776
Query: 147 LRLLDAIKTCKFHHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVN 206
+ + ++ V FY+ G ++ PR
Sbjct: 1777 MSIESLVEV------V-FYR-------GMTMQV-------AVPRDELG------------ 1803
Query: 207 YREAYNMFACN----GILFNHESPRRGENFVTRKITRSVAKISLGLMEYV 252
R Y M A N F+ E+ + + V K + L+E V
Sbjct: 1804 -RSNYGMIAINPGRVAASFSQEA--------LQYVVERVGKRTGWLVEIV 1844
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 43.8 bits (104), Expect = 4e-05
Identities = 44/210 (20%), Positives = 71/210 (33%), Gaps = 46/210 (21%)
Query: 55 EFLISKGYEV-----------HGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTD 103
L + V + ++Q + L GD+ +
Sbjct: 21 ALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80
Query: 104 SSCLVQIISSVQPRE-VYNLAAQSHVKVSFDMSE----YTAEVDAVGTLRLLDAIKTCKF 158
L + + P + V ++ A V S + + Y V VG LRLL A+
Sbjct: 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGES--VRDPLKYYDNNV--VGILRLLQAML---- 132
Query: 159 HHQVK---FYQASTSELYG-------KVVETPQTETTPFYPRSPYACAKLYAYWIVVNYR 208
H+ F +S++ ++G P P SPY +KL A ++ +
Sbjct: 133 LHKCDKIIF--SSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCA 190
Query: 209 EAYNMFACNGIL---FN----HESPRRGEN 231
EAY + GI FN HE GE+
Sbjct: 191 EAYGI---KGICLRYFNACGAHEDGDIGEH 217
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 15/71 (21%)
Query: 4 LTSKGEFKNPFRIH-LYLESRT--DLEYAVHKI---RYRIKT---LEDELEEAEDGSYLA 54
L K ++ I +YLE + + EYA+H+ Y I +D + D Y
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-YFY 474
Query: 55 EFLISKGYEVH 65
+ G+ H
Sbjct: 475 SHI---GH--H 480
Score = 42.1 bits (98), Expect = 2e-04
Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 45/180 (25%)
Query: 74 FNTGRIQHLYSNPASHVEGSMK--LHYGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVS 131
F TG Q+ Y + S E + D+ D I+S E+ ++
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM--PKSILSK---EEIDHIIMSKD---- 59
Query: 132 FDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK-FYQASTSELYGKVVETPQTETTPFYPR 190
GTLRL + + K V+ F + Y ++ +TE R
Sbjct: 60 ----------AVSGTLRLFWTLLS-KQEEMVQKFVEEVLRINYKFLMSPIKTE-----QR 103
Query: 191 SPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGLME 250
P ++Y + R+ L+N ++ + V+R + K+ L+E
Sbjct: 104 QPSMMTRMY-----IEQRDR---------LYN-DNQVFAKYNVSRL--QPYLKLRQALLE 146
Score = 41.0 bits (95), Expect = 4e-04
Identities = 42/321 (13%), Positives = 90/321 (28%), Gaps = 74/321 (23%)
Query: 24 TDLEYAVHKIRYRIKTLEDELEEAEDGSYLAEFLISKGY----EVHGIIRRSSSFNTGRI 79
TD A + L E S L ++L + EV + I
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT----NPRRLSII 333
Query: 80 QHLYSNPASHVEGSMKLHYGDMTD--SSCLVQIISSVQPREVYNLAA--QSHVKVS---- 131
+ + + ++ +T S L ++ + R++++ + +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 132 ----FDMSEYTAEVDAVGTLRLLDAIK-----TCKFHH---QVKFYQASTSELYGKVVET 179
FD+ + V + K T ++K + L+ +V+
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 180 -------PQTETTPFYPRSPYACAKLYAYWIV------VNYREAYNMFACNGILFNHESP 226
+ P Y Y Y + + + E +F + +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQ-------YFYSHIGHHLKNIEHPERMTLF--RMVFLDF--- 500
Query: 227 RRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVSS--FERI--EWRD 282
F+ +KI L++ + K Y+ + +ER+ D
Sbjct: 501 ----RFLEQKIRHD------STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 283 FVHTY--RLYR----DIGHIS 297
F+ L D+ I+
Sbjct: 551 FLPKIEENLICSKYTDLLRIA 571
Score = 36.8 bits (84), Expect = 0.010
Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 19/119 (15%)
Query: 7 KGEFKNPFRIHLYLESRTDLEYAVHKIRYRIKTLEDELEEAEDGSYLAEFLISKGYEVHG 66
E FR ++L D + KIR+ D GS L K Y+ +
Sbjct: 486 HPERMTLFR-MVFL----DFRFLEQKIRH------DSTAWNASGSILNTLQQLKFYKPY- 533
Query: 67 IIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQIISSVQPREVYNLAAQ 125
I + + + E L TD L++I + ++ A +
Sbjct: 534 -ICDNDPKYERLVNAILDFLPKIEE---NLICSKYTD---LLRIALMAEDEAIFEEAHK 585
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 41.2 bits (97), Expect = 3e-04
Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 32/167 (19%)
Query: 50 GSYLAEFLISKG-YEVHGIIRRSSSFNTGRIQHLYSNPASH-VEGSMKLHYGDMTDSSCL 107
G++L E L+ + YEV+G+ + I ++P H VEG + +H +
Sbjct: 328 GNHLTERLLREDHYEVYGL-----DIGSDAISRFLNHPHFHFVEGDISIHSEWIEY---H 379
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
V+ V P L A + E+D LR+ I+ C + + +
Sbjct: 380 VKKCDVVLP-----LVAIATPIEYTRNPLRVFELDFEENLRI---IRYCVKYRK-RIIFP 430
Query: 168 STSELYGKVVETPQTETTPFY-------PRSPYACAK------LYAY 201
STSE+YG + E PR Y+ +K ++AY
Sbjct: 431 STSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAY 477
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 39.1 bits (91), Expect = 0.001
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 17/105 (16%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G + IS G+ + + R N ++Q L + L + D LV
Sbjct: 17 GKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAK----LIEASLDDHQRLVD 72
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK 154
+ V V +S ++ + L+L++AIK
Sbjct: 73 ALKQV------------DVVISA-LAGGVLSHHILEQLKLVEAIK 104
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 38.4 bits (89), Expect = 0.001
Identities = 22/164 (13%), Positives = 45/164 (27%), Gaps = 28/164 (17%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS + E ++G+EV I+R + + + + D+ D +
Sbjct: 13 GSRILEEAKNRGHEVTAIVRNAGK-------------ITQTHKDINILQKDIFDLTLSD- 58
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
L+ Q+ V ++ +S AE L+ + +
Sbjct: 59 ------------LSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLL--VVGGA 104
Query: 170 SELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNM 213
+ L E+ Y A+ A +
Sbjct: 105 ASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAEF 148
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 38.5 bits (90), Expect = 0.002
Identities = 33/151 (21%), Positives = 52/151 (34%), Gaps = 25/151 (16%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G LA L ++G+EV G+ R A + ++ D+T L
Sbjct: 15 GLELARRLTAQGHEVTGLRRS----------------AQPMPAGVQTLIADVTRPDTLAS 58
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
I+ VY +AA + + G L A++ H + +ST
Sbjct: 59 IVHLRPEILVYCVAASEYSDEHY------RLSYVEGLRNTLSALEGAPLQHVF--FVSST 110
Query: 170 SELYGKVVETPQTETTPFYPRSPYACAKLYA 200
+YG+ VE E TP + L A
Sbjct: 111 G-VYGQEVEEWLDEDTPPIAKDFSGKRMLEA 140
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 37.2 bits (87), Expect = 0.004
Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 20/119 (16%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS+L L+ +GY V +R N +++HL P + E + L D+ D +
Sbjct: 18 GSWLVMRLLERGYTVRATVR--DPTNVKKVKHLLDLPKA--ETHLTLWKADLADEGSFDE 73
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVD----AV-GTLRLLDAIKTCKFHHQVK 163
I V+ HV D E + + G L ++ + C V+
Sbjct: 74 AIKGCT--GVF------HVATPMDFESKDPENEVIKPTIEGMLGIMKS---CAAAKTVR 121
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 36.4 bits (84), Expect = 0.008
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSS-SFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
G ++A+ + G+ ++R S+ S N+ + Q L S AS + +G + D + LV
Sbjct: 17 GRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGAN----IVHGSIDDHASLV 72
Query: 109 Q-------IISSVQPREV------YNLAAQSHVKVSFDMSEYTAEVDAVGTL 147
+ +IS+V ++ + F SE+ +VD V +
Sbjct: 73 EAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAV 124
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 35.5 bits (82), Expect = 0.014
Identities = 18/153 (11%), Positives = 41/153 (26%), Gaps = 29/153 (18%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS L +++G+EV ++R H++ + D++ + +
Sbjct: 17 GSALLNEALNRGFEVTAVVRHPEKI---------KIENEHLK----VKKADVSSLDEVCE 63
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
+ V + + L ++D K +F
Sbjct: 64 VCKGADA--VISAFNPGWNNPDI------YDETIKVYLTIIDG---VKKAGVNRFLMVGG 112
Query: 170 SELYGKVVETPQTET--TPFYPRSPYACAKLYA 200
+ G + P + P + K
Sbjct: 113 A---GSLFIAPGLRLMDSGEVPENILPGVKALG 142
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 35.2 bits (81), Expect = 0.030
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 26/133 (19%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRI---QHLYSNPASHVEGSMKLHY-----GDM 101
G+ + + L+ G +V + +S F+ Q +Y+ + GS L G
Sbjct: 490 GAEVLQGLLQGGAKV---VVTTSRFSKQVTDYYQSIYAKYGAK--GS-TLIVVPFNQGSK 543
Query: 102 TDSSCLVQIISSVQPREVYNL--------AAQSHVKVSFD----MSEYTAEVDAVGTLRL 149
D L++ I + AA + + SE+ + LR+
Sbjct: 544 QDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRM 603
Query: 150 LDAIKTCKFHHQV 162
+ +K K +
Sbjct: 604 MGCVKKQKSARGI 616
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 34.5 bits (80), Expect = 0.031
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 21/119 (17%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
S L + L+ KGY V+ +R N ++ HL G +K+ D+TD
Sbjct: 22 ASLLVKLLLQKGYAVNTTVR--DPDNQKKVSHLLELQEL---GDLKIFRADLTDELSFEA 76
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVD----AV-GTLRLLDAIKTCKFHHQVK 163
I+ V+ HV + E D A+ G + ++ A C VK
Sbjct: 77 PIAGCD--FVF------HVATPVHFASEDPENDMIKPAIQGVVNVMKA---CTRAKSVK 124
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 34.5 bits (80), Expect = 0.035
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 19/119 (15%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS++ + L+ GY V+ I R+ + L + P + + D+++
Sbjct: 14 GSWIIKSLLENGYSVNTTI-RADPERKRDVSFLTNLPGA--SEKLHFFNADLSNPDSFAA 70
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVD----AV-GTLRLLDAIKTCKFHHQVK 163
I ++ H D + E V G L +L A C VK
Sbjct: 71 AIEGCV--GIF------HTASPIDFAVSEPEEIVTKRTVDGALGILKA---CVNSKTVK 118
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.037
Identities = 8/26 (30%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 90 VEGSMKLHYGDMTDSSCLVQIISSVQ 115
++ S+KL Y D DS+ + I ++++
Sbjct: 25 LQASLKL-YAD--DSAPALAIKATME 47
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 33.4 bits (77), Expect = 0.077
Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 24/120 (20%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHY---GDMTDSSC 106
S++ E L+ GY+V G R +S +Q + + DM
Sbjct: 24 ASHVVEQLLEHGYKVRGTARSAS--KLANLQKRWDAK-----YPGRFETAVVEDMLKQGA 76
Query: 107 LVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEV--DAV-GTLRLLDAIKTCKFHHQVK 163
++I V H+ S EV A+ GTL L A VK
Sbjct: 77 YDEVIKGAA--GVA------HIASVVSFSNKYDEVVTPAIGGTLNALRAAAATP---SVK 125
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 33.3 bits (76), Expect = 0.078
Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 26/118 (22%)
Query: 50 GSYLAEFLISKG--YEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
G + + L + G++R + + G + GD+TD+ +
Sbjct: 17 GQIVYKKLKEGSDKFVAKGLVRSAQG-------------KEKIGGEADVFIGDITDADSI 63
Query: 108 VQII-----------SSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK 154
+ + + ++ + F+ +Y +VD +G +DA K
Sbjct: 64 NPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAK 121
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 31.9 bits (73), Expect = 0.15
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 21/105 (20%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G + GYEV ++R ++ R+ PA V GD+ ++ + +
Sbjct: 16 GLTTLAQAVQAGYEVTVLVR-----DSSRLPSEGPRPAHVVV-------GDVLQAADVDK 63
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK 154
++ V L V + G ++ A+K
Sbjct: 64 TVAGQ--DAVIVLLG-------TRNDLSPTTVMSEGARNIVAAMK 99
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 32.2 bits (73), Expect = 0.17
Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 19/111 (17%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNT--GRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
G ++ I G + ++R++ + + + + + + V L GD+ D L
Sbjct: 15 GRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVI----LLEGDINDHETL 70
Query: 108 VQ-------IISSVQPREV------YNLAAQSHVKVSFDMSEYTAEVDAVG 145
V+ +I + + ++ F SE+ +VD
Sbjct: 71 VKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDRHD 121
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 32.4 bits (75), Expect = 0.18
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 18/98 (18%)
Query: 144 VGTLRLLDAIKTCKFHHQVK---FYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYA 200
L LL ++ VK F +S++ +YG +P ET P +PY KL A
Sbjct: 107 DSLLSLLRVMR----ERAVKRIVF--SSSATVYGVPERSPIDETFPLSATNPYGQTKLMA 160
Query: 201 YWIVVNYREAYNMFACNGIL---FN----HESPRRGEN 231
I+ + A + FN HES GE+
Sbjct: 161 EQILRDVEAADPSW--RVATLRYFNPVGAHESGLIGED 196
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 31.9 bits (73), Expect = 0.20
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 19/105 (18%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
YL L +KG+E ++R N + L AS + ++ +
Sbjct: 34 ARYLLSELKNKGHEPVAMVR-----NEEQGPELRERGASDIVV------ANLEED--FSH 80
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIK 154
+S+ V A ++ T +D G ++ + +
Sbjct: 81 AFASID--AVVFAAGSGP----HTGADKTILIDLWGAIKTIQEAE 119
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 31.8 bits (72), Expect = 0.26
Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 21/111 (18%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G+++ + + G+ + R +SS T + S A V G++ + LV+
Sbjct: 24 GNHMVKGSLKLGHPTYVFTRPNSS-KTTLLDEFQSLGAIIV-------KGELDEHEKLVE 75
Query: 110 -------IISSVQPREV---YNL---AAQSHVKVSFDMSEYTAEVDAVGTL 147
+IS++ ++ + + + F S++ E D + L
Sbjct: 76 LMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 126
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 31.1 bits (70), Expect = 0.29
Identities = 18/166 (10%), Positives = 39/166 (23%), Gaps = 29/166 (17%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS + +G+EV ++R + V
Sbjct: 13 GSAIVAEARRRGHEVLAVVRDPQ--------KAADRLGATVAT------LVKEPLVLTEA 58
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK-FYQAS 168
+ S +S + L+ ++ + +
Sbjct: 59 DLDS---------VDAVVDALSVPWGSGRGYLHLDFATHLVSLLR----NSDTLAVFILG 105
Query: 169 TSELYGKVVETPQTETTP-FYPRSPYACAKLYAYWIVVNYREAYNM 213
++ L + P P P+ LY Y+ + N+
Sbjct: 106 SASLAMPGADHPMILDFPESAASQPWYDGALYQYYEYQFLQMNANV 151
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 30.4 bits (69), Expect = 0.50
Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 34/153 (22%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMT-DSSCLV 108
G L + L + Y+++ R+ +K + D+ +
Sbjct: 13 GKSLLKSLSTTDYQIYAGARKVEQ-------------VPQYNN-VKAVHFDVDWTPEEMA 58
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK-FYQA 167
+ + + + N++ + +VD G ++L+ A + +VK F
Sbjct: 59 KQLHGMD--AIINVSGSG--------GKSLLKVDLYGAVKLMQAAEK----AEVKRFILL 104
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYA 200
ST ++ + F Y AK +A
Sbjct: 105 STI----FSLQPEKWIGAGFDALKDYYIAKHFA 133
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 30.8 bits (70), Expect = 0.52
Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 30/191 (15%)
Query: 57 LISKGYEVHGI--IRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQIISSV 114
LI GY+ + S+ + R++ L + + + D+ D L ++
Sbjct: 31 LIENGYDCVVADNLSNSTYDSVARLEVL-------TKHHIPFYEVDLCDRKGLEKVFKEY 83
Query: 115 QPREVYNLAAQSHVKVSFDMS-EYTAEVDAVGTLRLLDAIKTCKFHHQVK---FYQASTS 170
+ V + A V S + Y + +GT+ LL+ ++ + V F +S++
Sbjct: 84 KIDSVIHFAGLKAVGESTQIPLRYY-HNNILGTVVLLELMQ----QYNVSKFVF--SSSA 136
Query: 171 ELYGKVVETPQ----TETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGIL--FN-- 222
+YG P E P P +PY K I+ + + IL FN
Sbjct: 137 TVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPI 196
Query: 223 --HESPRRGEN 231
H S GE+
Sbjct: 197 GAHPSGLIGED 207
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 30.1 bits (68), Expect = 1.0
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHV---KVSFDMSEYTAEVDAVGTLRLLDAIKT 155
D+ I + Q V NL+A HV K F + +V+ T + +
Sbjct: 96 LDIGSIEYDAFIKADGQYDYVLNLSALKHVRSEKDPFTLMR-MIDVNVFNTDKTIQQ--- 151
Query: 156 CKFHHQVKFYQAST 169
K++ ST
Sbjct: 152 SIDAGAKKYFCVST 165
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural
genomics, protein structure initiative; 2.04A
{Bacteroides vulgatus atcc 8482}
Length = 320
Score = 29.3 bits (66), Expect = 1.6
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 35 YRIKTLEDELEEAEDGSYLAEFLISKGYEV 64
RI ++ A LA+ + + G+EV
Sbjct: 104 IRIAIDPQNIDRAIV---LAKAIKTMGFEV 130
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 28.5 bits (64), Expect = 2.7
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASH 89
G L L + G+EV ++R+ + + +P +
Sbjct: 160 GRALTAQLQTGGHEVIQLVRKEP-----KPGKRFWDPLNP 194
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.7 bits (61), Expect = 3.6
Identities = 4/15 (26%), Positives = 8/15 (53%), Gaps = 5/15 (33%)
Query: 276 ERI-----EWRDFVH 285
+++ EWR F +
Sbjct: 54 DKLVDTRSEWRTFSN 68
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 27.2 bits (61), Expect = 6.6
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 13/45 (28%)
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDA 143
GD ++ + + + ++P + N AA +TA VD
Sbjct: 38 GDFSNPKGVAETVRKLRPDVIVNAAA------------HTA-VDK 69
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 27.2 bits (60), Expect = 7.6
Identities = 23/151 (15%), Positives = 38/151 (25%), Gaps = 33/151 (21%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
L+ L +G+ + G R R G+ +
Sbjct: 17 ARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWP----------GEEPSLDGVTH 66
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
++ S P + D V L L + ST
Sbjct: 67 LLISTAP---------------------DSGGDPV--LAALGDQIAARAAQFRWVGYLST 103
Query: 170 SELYGKVVETPQTETTPFYPRSPYACAKLYA 200
+ +YG ETTP P + ++ A
Sbjct: 104 TAVYGDHDGAWVDETTPLTPTAARGRWRVMA 134
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 27.1 bits (61), Expect = 8.1
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 13/44 (29%)
Query: 100 DMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDA 143
D+T+ S + Q++ ++P + + AA YT VD
Sbjct: 41 DITNISQVQQVVQEIRPHIIIHCAA------------YTK-VDQ 71
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 26.7 bits (60), Expect = 9.5
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 13/44 (29%)
Query: 100 DMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDA 143
D+T+ + + + +P V N AA +TA VD
Sbjct: 48 DITNVLAVNKFFNEKKPNVVINCAA------------HTA-VDK 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.397
Gapped
Lambda K H
0.267 0.0825 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,723,572
Number of extensions: 275438
Number of successful extensions: 880
Number of sequences better than 10.0: 1
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 78
Length of query: 306
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 213
Effective length of database: 4,105,140
Effective search space: 874394820
Effective search space used: 874394820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)