RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15786
(306 letters)
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
[TaxId: 562]}
Length = 357
Score = 216 bits (551), Expect = 5e-69
Identities = 151/221 (68%), Positives = 176/221 (79%), Gaps = 1/221 (0%)
Query: 49 DGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
DGSYLAEFL+ KGYEVHGI RR+SSFNT R+ H+Y +P + LHYGD++D+S L
Sbjct: 13 DGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPK-FHLHYGDLSDTSNLT 71
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+I+ VQP EVYNL A SHV VSF+ EYTA+VDA+GTLRLL+AI+ + +FYQAS
Sbjct: 72 RILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS 131
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRR 228
TSELYG V E PQ ETTPFYPRSPYA AKLYAYWI VNYRE+Y M+ACNGILFNHESPRR
Sbjct: 132 TSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRR 191
Query: 229 GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDY 269
GE FVTRKITR++A I+ GL + LGN+DS RDWGHAKDY
Sbjct: 192 GETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDY 232
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 347
Score = 212 bits (539), Expect = 2e-67
Identities = 177/223 (79%), Positives = 200/223 (89%)
Query: 49 DGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
DGSYLAEFL+ KGYEVHGI+RRSSSFNTGRI+HLY NP +H+EG+MKLHYGD+TDS+CLV
Sbjct: 13 DGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLV 72
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+II+ V+P E+YNL AQSHVK+SFD++EYTA+VD VGTLRLLDA+KTC + VKFYQAS
Sbjct: 73 KIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS 132
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRR 228
TSELYGKV E PQ ETTPFYPRSPY AKLYAYWIVVN+REAYN+FA NGILFNHESPRR
Sbjct: 133 TSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRR 192
Query: 229 GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
G NFVTRKI+RSVAKI LG +E LGNLD+KRDWGHAKDYVE
Sbjct: 193 GANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVE 235
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 339
Score = 156 bits (395), Expect = 4e-46
Identities = 129/222 (58%), Positives = 161/222 (72%), Gaps = 1/222 (0%)
Query: 49 DGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
DGSYL EFL+ KGYEVHG+IRRSS+FNT RI H+Y +P + + MKLHY D+TD+S L
Sbjct: 13 DGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLR 72
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQ-A 167
+ I ++P EVYNLAAQSHV VSF++ +YTA+V A G LRLL+A+++
Sbjct: 73 RWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQ 132
Query: 168 STSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPR 227
+ S PQ+ETTPF+PRSPYA +K A+W VNYREAY +FACNGILFNHESPR
Sbjct: 133 AGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPR 192
Query: 228 RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDY 269
RGENFVTRKITR++ +I +GL + LGNL + RDWG A DY
Sbjct: 193 RGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDY 234
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 321
Score = 149 bits (376), Expect = 2e-43
Identities = 110/224 (49%), Positives = 146/224 (65%), Gaps = 8/224 (3%)
Query: 49 DGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
DG+YLA+ L+ KGY VHG++ R SS R++ L ++ GDM D+ +
Sbjct: 12 DGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEG------DIQYEDGDMADACSVQ 65
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+ + QP+EVYNLAAQS V S++ T VD +G LL+AI+ +FYQAS
Sbjct: 66 RAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPET--RFYQAS 123
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRR 228
TSE++G + Q E TPFYPRSPY AKLY +WI VNYRE++ + A +GILFNHESP R
Sbjct: 124 TSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLR 183
Query: 229 GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEV 272
G FVTRK+T +VA+I LG + ++LGN+D+KRDWG A DYVE
Sbjct: 184 GIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEA 227
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 150 bits (379), Expect = 2e-43
Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 29/241 (12%)
Query: 49 DGSYLAEFLISKGYE-VHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
GS + +I + V I + + + N + + + + D+ DS+ +
Sbjct: 12 IGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESN------RYNFEHADICDSAEI 65
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFH------HQ 161
+I QP V +LAA+SHV S E + VGT LL+ + +
Sbjct: 66 TRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNN 125
Query: 162 VKFYQASTSELYGKVVETPQ----------TETTPFYPRSPYACAKLYAYWIVVNYREAY 211
+F+ ST E+YG + + TETT + P SPY+ +K + +V +R Y
Sbjct: 126 FRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY 185
Query: 212 NMFACNGILFNHESPR-RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYV 270
+ N+ P E + I ++ L + G D RDW + +D+
Sbjct: 186 GLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPI-----YGKGDQIRDWLYVEDHA 240
Query: 271 E 271
Sbjct: 241 R 241
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 312
Score = 137 bits (345), Expect = 6e-39
Identities = 51/228 (22%), Positives = 90/228 (39%), Gaps = 25/228 (10%)
Query: 49 DGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
GS+L + L+ G+EV + +F TGR +++ + +L D+ +
Sbjct: 13 VGSHLTDKLMMDGHEVTVV----DNFFTGRKRNVEHWIGHE---NFELINHDVVEPLY-- 63
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
++ ++Y+LA+ + T + + +GTL +L K + AS
Sbjct: 64 -----IEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAK----RVGARLLLAS 114
Query: 169 TSELYGKVVETPQTE-----TTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNH 223
TSE+YG PQ+E P PR+ Y K A + Y + + +FN
Sbjct: 115 TSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNT 174
Query: 224 ESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
PR N R ++ + + G V G+ R + + D V
Sbjct: 175 FGPRMHMND-GRVVSNFILQALQGEPLTV-YGSGSQTRAFQYVSDLVN 220
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptomyces venezuelae [TaxId: 54571]}
Length = 322
Score = 121 bits (303), Expect = 1e-32
Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 23/229 (10%)
Query: 50 GSYLAEFLISKGY------EVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTD 103
GS+ L++ Y EV + + + N + + ++P ++ +GD+ D
Sbjct: 13 GSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADP------RLRFVHGDIRD 66
Query: 104 SSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVK 163
+ + + AA+SHV S + E + GT LL +
Sbjct: 67 --AGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQC---AVDAGVGR 121
Query: 164 FYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNH 223
ST+++YG + TE++P P SPYA +K + + Y Y + N+
Sbjct: 122 VVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCNN 181
Query: 224 ESPR-RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
P E + +T + +L L G+ + R+W H D+
Sbjct: 182 YGPYQHPEKLIPLFVTNLLDGGTLPL-----YGDGANVREWVHTDDHCR 225
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Escherichia coli [TaxId:
562]}
Length = 338
Score = 108 bits (270), Expect = 7e-28
Identities = 46/247 (18%), Positives = 92/247 (37%), Gaps = 17/247 (6%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS+ L+ G++V + +S + GD+ + + + +
Sbjct: 13 GSHTCVQLLQNGHDVIILDNLCNSKR-----SVLPVIERLGGKHPTFVEGDIRNEALMTE 67
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
I+ V + A V S + + GTLRL+ + + F +S+
Sbjct: 68 ILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLIS---AMRAANVKNFIFSSS 124
Query: 170 SELYGKVVETPQTE-TTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGI-LFN----H 223
+ +YG + P E P+SPY +KL I+ + ++A ++ + FN H
Sbjct: 125 ATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAH 184
Query: 224 ESPRRGEN--FVTRKITRSVAKISLGLMEYVQL-GNLDSKRDWGHAKDYVEVSSFERIEW 280
S GE+ + + +A++++G + + + GN D +DY+ V
Sbjct: 185 PSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHV 244
Query: 281 RDFVHTY 287
Sbjct: 245 VAMEKLA 251
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 341
Score = 105 bits (263), Expect = 5e-27
Identities = 48/252 (19%), Positives = 87/252 (34%), Gaps = 6/252 (2%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS L E L+ +V G+ ++ + + + S + + K GD+ +
Sbjct: 29 GSNLLETLLKLDQKVVGLDNFATG-HQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNN 87
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
+ V + AA V S + + + G L +L A + K F A++
Sbjct: 88 ACAGVDYV--LHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQS---FTYAAS 142
Query: 170 SELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRRG 229
S YG P+ E T P SPYA K + Y FN R+
Sbjct: 143 SSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQD 202
Query: 230 ENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVEVSSFERIEWRDFVHTYRL 289
N + + + G+ ++ RD+ + ++ V+ + D +
Sbjct: 203 PNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQVYN 262
Query: 290 YRDIGHISVTKL 301
G S+ +L
Sbjct: 263 IAVGGRTSLNQL 274
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 101 bits (252), Expect = 2e-25
Identities = 51/237 (21%), Positives = 98/237 (41%), Gaps = 33/237 (13%)
Query: 50 GSYLAEFLISKGYEVHGII--RRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCL 107
GS ++ + +VH + + + + N ++ + + ++L GD+ D+ +
Sbjct: 15 GSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGD-------RVELVVGDIADAELV 67
Query: 108 VQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQA 167
++ + + + AA+SH S + + +GT LL+A + ++F+
Sbjct: 68 DKLA--AKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAA----RKYDIRFHHV 121
Query: 168 STSELYGKVVET------------PQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFA 215
ST E+YG + T T + P SPY+ K + IV + ++ + A
Sbjct: 122 STDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKA 181
Query: 216 CNGILFNHESPRR-GENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
N+ P + E F+ R+IT +A I L G + RDW H D+
Sbjct: 182 TISNCSNNYGPYQHIEKFIPRQITNILAGIKPKL-----YGEGKNVRDWIHTNDHST 233
>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 347
Score = 94.0 bits (232), Expect = 1e-22
Identities = 45/256 (17%), Positives = 86/256 (33%), Gaps = 15/256 (5%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS+ LI GY+ S+S + L H+ + D+ D L +
Sbjct: 14 GSHTVVELIENGYDCVVADNLSNS-TYDSVARLEVLTKHHI----PFYEVDLCDRKGLEK 68
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
+ + V + A V S + + +GT+ LL+ ++ V A+
Sbjct: 69 VFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATV 128
Query: 170 SELYGKVV-ETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNM------FACNGILFN 222
+ P E P P +PY K I+ + + +
Sbjct: 129 YGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGA 188
Query: 223 HESPRRGEN--FVTRKITRSVAKISLGLMEYVQL-GNLDSKRDWGHAKDYVEVSSFERIE 279
H S GE+ + + +A++++G E + + G+ RD +DY+ V +
Sbjct: 189 HPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGH 248
Query: 280 WRDFVHTYRLYRDIGH 295
+ + G
Sbjct: 249 IAALQYLEAYNENEGL 264
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi
[TaxId: 90370]}
Length = 338
Score = 93.3 bits (230), Expect = 2e-22
Identities = 49/242 (20%), Positives = 96/242 (39%), Gaps = 28/242 (11%)
Query: 49 DGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
GS LA F +S+G ++ S T + L S + + +GD+ + + +
Sbjct: 12 LGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLG------NFEFVHGDIRNKNDVT 65
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
++I+ P ++LA Q + S D E++ GTL LL+A+ +++ +S
Sbjct: 66 RLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAV--RQYNSNCNIIYSS 123
Query: 169 TSELYGKVVETPQ----------------TETTPFYPRSPYACAKLYAYWIVVNYREAYN 212
T+++YG + + E+T SPY C+K A +++Y +
Sbjct: 124 TNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFG 183
Query: 213 MFACNGIL---FNHESPRRGENFVTRKITRSVAKISLGLMEYVQL-GNLDSKRDWGHAKD 268
+ + + + +I G+ + + GN RD HA+D
Sbjct: 184 LNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAED 243
Query: 269 YV 270
+
Sbjct: 244 MI 245
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose
epimerase/reductase (GDP-fucose synthetase) {Escherichia
coli [TaxId: 562]}
Length = 315
Score = 90.3 bits (223), Expect = 2e-21
Identities = 33/249 (13%), Positives = 69/249 (27%), Gaps = 40/249 (16%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
GS + L +G + R ++ DS +
Sbjct: 15 GSAIRRQLEQRGDVELVLRTRDE--------------------------LNLLDSRAVHD 48
Query: 110 IISSVQPREVYNLA-AQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+S + +VY A + + + + ++ + K
Sbjct: 49 FFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIH---AAHQNDVNKLLFLG 105
Query: 169 TSELYGKVVETPQTET-----TPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNH 223
+S +Y K+ + P E+ T PYA AK+ + +Y Y + + N
Sbjct: 106 SSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNL 165
Query: 224 ESPRRGENFVTRKITRSVAKISLGLM-----EYVQLGNLDSKRDWGHAKDYVEVSSFERI 278
P + + ++ + + V G+ R++ H D S
Sbjct: 166 YGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVME 225
Query: 279 EWRDFVHTY 287
+
Sbjct: 226 LAHEVWLEN 234
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 346
Score = 79.0 bits (193), Expect = 2e-17
Identities = 39/247 (15%), Positives = 78/247 (31%), Gaps = 11/247 (4%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEG-SMKLHYGDMTDSSCLV 108
GS+ L+ GY I ++F G + G S++ D+ D L
Sbjct: 15 GSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQ 74
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
++ V + A V S V+ GT++LL+ +K + V
Sbjct: 75 RLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSS-- 132
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGI-LFNHESPR 227
+ +PY +K + ++ + +A + + FN
Sbjct: 133 ATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAH 192
Query: 228 RGENF------VTRKITRSVAKISLGLMEYVQL-GNLDSKRDWGHAKDYVEVSSFERIEW 280
+ + V+++++G E + + GN D +DY+ V +
Sbjct: 193 ASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHI 252
Query: 281 RDFVHTY 287
Sbjct: 253 AALRKLK 259
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 74.6 bits (182), Expect = 8e-16
Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 18/227 (7%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
S++A L +G+ V + + T + + H D+ ++
Sbjct: 28 ASHIARRLKHEGHYVIASDWKKNEHMTEDMFCD------------EFHLVDLRVMENCLK 75
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCK----FHHQVKFY 165
+ V A + + + + +++A + F+
Sbjct: 76 VTEGV-DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACI 134
Query: 166 QASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHES 225
+L V +++ P P+ + KL + +Y + + + G N
Sbjct: 135 YPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYG 194
Query: 226 PR-RGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
P + + K + G+ R + + VE
Sbjct: 195 PFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVE 241
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia
pseudotuberculosis [TaxId: 633]}
Length = 356
Score = 64.1 bits (154), Expect = 3e-12
Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 14/210 (6%)
Query: 49 DGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLV 108
G +L+ +L + G V G + + + L+ + V M+ GD+ D + L+
Sbjct: 20 KGGWLSLWLQTMGATVKGYSLTAPT-----VPSLFET--ARVADGMQSEIGDIRDQNKLL 72
Query: 109 QIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAS 168
+ I QP V+++AAQ V++S+ T + +GT+ LL+AI+ V +
Sbjct: 73 ESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSD 132
Query: 169 TSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRR 228
+ E PY+ +K A + +YR ++ A G + R
Sbjct: 133 KCYDNKE-WIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVR 191
Query: 229 GEN------FVTRKITRSVAKISLGLMEYV 252
N + +I + + +
Sbjct: 192 AGNVIGGGDWALDRIVPDILRAFEQSQPVI 221
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
5691]}
Length = 383
Score = 52.1 bits (123), Expect = 3e-08
Identities = 36/262 (13%), Positives = 66/262 (25%), Gaps = 38/262 (14%)
Query: 50 GSYLAEFLIS-KGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGS-----------MKLH 97
GS+ L+ + V + + N A ++ S L
Sbjct: 15 GSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALE 74
Query: 98 YGDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCK 157
GD+ + L + + P + + V + L
Sbjct: 75 VGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH 134
Query: 158 -----FHHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYN 212
+ + P P SPY +KL A ++ + EAY
Sbjct: 135 KCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYG 194
Query: 213 MFACNGILFN----------HESPRRGENFVTRKITRSVAKISLGLMEYVQ--------- 253
+ FN E + + + + R ++ I+ +
Sbjct: 195 IKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRM 254
Query: 254 --LGNLDSKRDWGHAKDYVEVS 273
G D +DYV V
Sbjct: 255 PIFGTDYPTPDGTCVRDYVHVC 276
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 393
Score = 41.5 bits (95), Expect = 7e-05
Identities = 27/185 (14%), Positives = 45/185 (24%), Gaps = 11/185 (5%)
Query: 50 GSYLAEFLISKGYEVHGI-----------IRRSSSFNTGRIQHLYSNPASHVEGSMKLHY 98
G A L K YEV + + S I S + S++L+
Sbjct: 14 GWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYV 73
Query: 99 GDMTDSSCLVQIISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKF 158
GD+ D L + S +P V + Q S + L+ + K
Sbjct: 74 GDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKE 133
Query: 159 HHQVKFYQASTSELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNG 218
+ + E + Y Y + + N
Sbjct: 134 FGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNI 193
Query: 219 ILFNH 223
Sbjct: 194 AFTCK 198
>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces
salmonicolor [TaxId: 5005]}
Length = 342
Score = 40.2 bits (92), Expect = 2e-04
Identities = 36/270 (13%), Positives = 65/270 (24%), Gaps = 29/270 (10%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
S++ E L+ GY+V G R +S +Q + + DM +
Sbjct: 24 ASHVVEQLLEHGYKVRGTARSAS--KLANLQKRWDAK--YPGRFETAVVEDMLKQGAYDE 79
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
+ +A + V + + GTL L A + ++
Sbjct: 80 -----VIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTV 134
Query: 170 SELYGK------------------VVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAY 211
S L K E+ P YA +K A + +
Sbjct: 135 SALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDEN 194
Query: 212 NMFACNGILFNHESPRRGENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHAKDYVE 271
+ G F + S + + L L +
Sbjct: 195 KPHFTLNA--VLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDI 252
Query: 272 VSSFERIEWRDFVHTYRLYRDIGHISVTKL 301
+ R+Y G +
Sbjct: 253 GLLHLGCLVLPQIERRRVYGTAGTFDWNTV 282
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
arborvitae (Thuja plicata) [TaxId: 3316]}
Length = 312
Score = 37.4 bits (85), Expect = 0.001
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
G + IS G+ + + R N ++Q L + L + D
Sbjct: 16 GKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAK----LIEASLDDHQR 68
>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase
(RmlD) {Salmonella enterica serovar typhimurium [TaxId:
90371]}
Length = 298
Score = 33.8 bits (75), Expect = 0.020
Identities = 23/174 (13%), Positives = 50/174 (28%), Gaps = 28/174 (16%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G L L G + + K GD ++ + +
Sbjct: 13 GWELQRSLAPVGNLIALDVHS------------------------KEFCGDFSNPKGVAE 48
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
+ ++P + + + D +E E+ + ++AI ST
Sbjct: 49 TVRKLRPDVIV----NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYST 104
Query: 170 SELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNH 223
++ + P ET P + Y KL + + + +F + +
Sbjct: 105 DYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAGK 158
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
{Aspergillus nidulans [TaxId: 162425]}
Length = 350
Score = 33.1 bits (74), Expect = 0.039
Identities = 28/217 (12%), Positives = 55/217 (25%), Gaps = 35/217 (16%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G+ L + G+ V + + L + P + L G + ++ L+
Sbjct: 16 GASLIRVAAAVGHHVRAQVHSLKG---LIAEELQAIPN------VTLFQGPLLNNVPLMD 66
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
++F + A + L DA K +
Sbjct: 67 -------------TLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIY----- 108
Query: 170 SELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFNHESPRRG 229
S + + P + P+ GI N+ +
Sbjct: 109 SSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVY--------AGIYNNNFTSLPY 160
Query: 230 ENFVTRKITRSVAKISLGLMEYVQLGNLDSKRDWGHA 266
F + + + L LD++ D G A
Sbjct: 161 PLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPA 197
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase
{Loblolly pine (Pinus taeda) [TaxId: 3352]}
Length = 307
Score = 32.1 bits (71), Expect = 0.079
Identities = 10/53 (18%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNT----GRIQHLYSNPASHVEGSMKLHY 98
G ++A+ + G+ ++R S++ + ++ ++ A+ V GS+ H
Sbjct: 16 GRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHA 68
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 205
Score = 30.8 bits (68), Expect = 0.16
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLY 83
G + GYEV ++R SS + + +
Sbjct: 16 GLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAH 49
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 27.6 bits (61), Expect = 0.65
Identities = 8/58 (13%), Positives = 21/58 (36%)
Query: 20 LESRTDLEYAVHKIRYRIKTLEDELEEAEDGSYLAEFLISKGYEVHGIIRRSSSFNTG 77
LE + ++ + + ++ + L + + G +H I S ++G
Sbjct: 38 LELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGSGPSSG 95
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 281
Score = 29.0 bits (63), Expect = 0.66
Identities = 20/173 (11%), Positives = 40/173 (23%), Gaps = 35/173 (20%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSCLVQ 109
G + + L K EV + D+T+ + +
Sbjct: 14 GREIQKQLKGKNVEVIPTDVQD---------------------------LDITNVLAVNK 46
Query: 110 IISSVQPREVYNLAAQSHVKVSFDMSEYTAEVDAVGTLRLLDAIKTCKFHHQVKFYQAST 169
+ +P V N AA + V + + +++A+
Sbjct: 47 FFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAI--------GPKNLAAAAYSVGAEIV 98
Query: 170 SELYGKVVETPQTETTPFYPRSPYACAKLYAYWIVVNYREAYNMFACNGILFN 222
V + E + A N+ +A N
Sbjct: 99 QISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENFVKALNPKYYIVRTAW 151
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 28.0 bits (61), Expect = 1.2
Identities = 11/81 (13%), Positives = 17/81 (20%), Gaps = 3/81 (3%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSS---FNTGRIQHLYSNPASHVEGSMKLHYGDMTDSSC 106
G A +L KG V + + L
Sbjct: 13 GHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD 72
Query: 107 LVQIISSVQPREVYNLAAQSH 127
I+ V ++AA
Sbjct: 73 ADVILIVVPAIHHASIAANIA 93
>d2nlza1 d.153.1.6 (A:3-539) Cephalosporin acylase {Bacillus
halodurans [TaxId: 86665]}
Length = 537
Score = 26.8 bits (58), Expect = 3.7
Identities = 12/66 (18%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 25 DLEYAVHKIRYRIKTLEDELEEAEDGSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHLYS 84
+ + A+ R++ + E +A+ L+ +G+++ ++ +F GR Q ++
Sbjct: 459 NPQAALDAPRWQWTNGKQVQVEPTFPVDIAQALVRRGHKIQ-VVLDEGAF--GRGQIIWR 515
Query: 85 NPASHV 90
+P + V
Sbjct: 516 DPTTGV 521
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE
{Escherichia coli [TaxId: 562]}
Length = 167
Score = 26.0 bits (56), Expect = 4.2
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 50 GSYLAEFLISKGYEVHGIIRRSSSFNTGRIQHL 82
G L +G+EV G +R + + +
Sbjct: 12 GQLWLTALCKQGHEVQGWLRVPQPYCSVNLVET 44
>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase
{Escherichia coli [TaxId: 562]}
Length = 307
Score = 26.5 bits (56), Expect = 4.9
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 50 GSYLAEFLISKGY-EVHGIIRRSSSFNTGRIQHL 82
GS + + L KG ++ + + L
Sbjct: 12 GSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL 45
>d1eara1 b.107.1.1 (A:1-74) Urease metallochaperone UreE, N-terminal
domain {Bacillus pasteurii [TaxId: 1474]}
Length = 74
Score = 24.3 bits (53), Expect = 7.1
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 254 LGNLDSKRDWGHAKDYVEVSSFER 277
+G++D D++EV +
Sbjct: 7 VGHIDDLSHQIKKVDWLEVEWEDL 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.397
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,151,462
Number of extensions: 52572
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 34
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)