Query psy1579
Match_columns 258
No_of_seqs 180 out of 1320
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 21:22:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1324|consensus 100.0 5.3E-50 1.1E-54 348.7 14.8 179 2-219 5-188 (190)
2 PF00186 DHFR_1: Dihydrofolate 100.0 1.5E-47 3.3E-52 323.0 14.4 158 2-219 3-161 (161)
3 PRK10769 folA dihydrofolate re 100.0 3.3E-44 7.2E-49 302.3 16.2 157 1-220 2-159 (159)
4 PTZ00164 bifunctional dihydrof 100.0 1.8E-38 3.8E-43 309.2 17.7 174 1-221 10-190 (514)
5 COG0262 FolA Dihydrofolate red 100.0 6.5E-38 1.4E-42 264.2 17.5 161 2-219 3-166 (167)
6 PRK00478 scpA segregation and 100.0 5.5E-34 1.2E-38 277.0 15.8 156 1-224 2-158 (505)
7 cd00209 DHFR Dihydrofolate red 100.0 6.6E-31 1.4E-35 217.6 17.1 156 1-218 1-158 (158)
8 PF01872 RibD_C: RibD C-termin 99.2 2.6E-10 5.7E-15 96.0 12.0 149 5-201 7-195 (200)
9 TIGR00227 ribD_Cterm riboflavi 98.9 1.7E-08 3.8E-13 86.1 11.4 130 3-180 7-176 (216)
10 PRK05625 5-amino-6-(5-phosphor 98.9 6.6E-08 1.4E-12 83.4 14.9 145 5-198 9-203 (217)
11 TIGR00326 eubact_ribD riboflav 98.7 1.1E-07 2.3E-12 88.2 11.0 128 5-180 147-307 (344)
12 PRK14059 hypothetical protein; 98.1 0.00032 6.9E-09 63.3 17.4 162 3-220 35-250 (251)
13 TIGR01508 rib_reduct_arch 2,5- 97.9 0.00088 1.9E-08 58.3 15.8 128 3-180 5-171 (210)
14 PRK14719 bifunctional RNAse/5- 97.4 0.01 2.2E-07 56.7 16.6 131 3-181 144-316 (360)
15 PRK10786 ribD bifunctional dia 97.2 0.0094 2E-07 56.7 14.2 130 4-181 152-328 (367)
16 COG1985 RibD Pyrimidine reduct 97.0 0.063 1.4E-06 48.1 16.0 134 5-186 10-185 (218)
17 PLN02807 diaminohydroxyphospho 94.7 1.1 2.3E-05 43.5 14.1 49 91-181 292-346 (380)
18 PRK00536 speE spermidine synth 41.4 16 0.00034 34.0 1.6 45 107-189 72-118 (262)
19 PHA03370 virion protein US2; P 39.0 81 0.0018 30.1 5.9 87 90-218 112-209 (269)
20 PF01344 Kelch_1: Kelch motif; 32.7 26 0.00055 22.7 1.2 12 108-119 11-22 (47)
21 PF02476 US2: US2 family; Int 29.2 1.5E+02 0.0033 25.3 5.5 40 109-186 12-53 (126)
22 cd08190 HOT Hydroxyacid-oxoaci 27.4 60 0.0013 31.4 3.1 27 91-121 68-94 (414)
23 PRK09860 putative alcohol dehy 27.3 62 0.0014 30.9 3.2 73 45-121 11-102 (383)
24 cd08176 LPO Lactadehyde:propan 26.1 58 0.0012 30.8 2.7 73 45-121 8-99 (377)
25 cd08177 MAR Maleylacetate redu 25.8 43 0.00093 31.2 1.8 27 91-121 65-91 (337)
26 TIGR01143 murF UDP-N-acetylmur 25.2 99 0.0021 29.4 4.1 52 59-117 282-333 (417)
27 COG1125 OpuBA ABC-type proline 23.8 77 0.0017 30.8 3.1 34 84-126 188-221 (309)
28 PRK00103 rRNA large subunit me 23.8 73 0.0016 27.5 2.7 15 107-121 97-111 (157)
29 TIGR03609 S_layer_CsaB polysac 23.5 97 0.0021 27.7 3.5 48 65-121 28-77 (298)
30 cd08189 Fe-ADH5 Iron-containin 22.4 88 0.0019 29.6 3.2 27 91-121 71-97 (374)
31 PF00941 FAD_binding_5: FAD bi 22.3 95 0.002 26.4 3.1 31 86-121 5-35 (171)
32 cd08193 HVD 5-hydroxyvalerate 22.0 45 0.00098 31.5 1.2 73 45-121 6-97 (376)
33 cd08188 Fe-ADH4 Iron-containin 21.8 55 0.0012 31.1 1.7 72 46-121 9-99 (377)
34 cd08194 Fe-ADH6 Iron-containin 21.6 97 0.0021 29.3 3.3 27 91-121 68-94 (375)
35 PF12242 Eno-Rase_NADH_b: NAD( 20.7 1.1E+02 0.0023 24.4 2.8 31 91-121 22-52 (78)
36 PF13964 Kelch_6: Kelch motif 20.7 60 0.0013 21.5 1.3 12 108-119 11-22 (50)
37 PF09895 DUF2122: RecB-family 20.6 2.7E+02 0.006 23.0 5.3 73 83-177 19-91 (106)
38 smart00612 Kelch Kelch domain. 20.2 61 0.0013 20.1 1.2 8 110-117 1-8 (47)
39 PRK10624 L-1,2-propanediol oxi 20.2 72 0.0016 30.3 2.1 73 45-121 10-101 (382)
40 cd08551 Fe-ADH iron-containing 20.1 1E+02 0.0022 28.9 3.1 27 91-121 68-94 (370)
No 1
>KOG1324|consensus
Probab=100.00 E-value=5.3e-50 Score=348.74 Aligned_cols=179 Identities=41% Similarity=0.657 Sum_probs=156.9
Q ss_pred eEEEEEeccceeecCCCcccCChhhhhHHHHHHcCCCCCCccceEEEeccccccccCCCCCCCCCcEEEEcCcCCCCCCC
Q psy1579 2 LMITVFLKVQGFFFEACQIFYTRKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQL 81 (258)
Q Consensus 2 ~~I~a~~~~~giG~~g~lPW~l~~Dm~~F~~iT~~~~~~~~~naVIMGRKTweSip~~~rPL~~R~nvVlSr~~~~~~~~ 81 (258)
-+|+|+.++.|||++|+|||++|.||+||+++|+.+.+|++.||||||||||||||+++|||+||.||||||+..... .
T Consensus 5 ~~Vva~~~~mGIGk~g~LPW~lpsemkyF~~vT~~tsd~~k~NaViMGRKtweSiP~k~RPL~gRiNiVLSR~~~~~~-~ 83 (190)
T KOG1324|consen 5 NLVVALSPNMGIGKNGDLPWPLPSEMKYFRRVTTSTSDPSKKNAVIMGRKTWESIPEKFRPLPGRINVVLSRSLKEDF-A 83 (190)
T ss_pred EEEEEEccccCcccCCCCCCCCHHHHHHHHHHhhccCCcccceeEEecccccccCCcccCCCCCceEEEEecccCcCc-C
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999987522 2
Q ss_pred CCCcEEEeCCHHHHHHHHHhhccCCCCCcEEEEeChhhhcccccccccccCCcccccchhhhcccCCccchhhhhhhHhh
Q psy1579 82 TGPNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQES 161 (258)
Q Consensus 82 ~~~~v~v~~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~ 161 (258)
..+++++++|+|.|+++|.+..++.+.++||||||+++|. ++
T Consensus 84 ~t~~~~~~~slesAl~lL~~pp~~~~ve~vfvIGG~~vy~--------------------------------------~a 125 (190)
T KOG1324|consen 84 PTENVFLSSSLESALDLLEEPPSSNSVEMVFVIGGSEVYS--------------------------------------EA 125 (190)
T ss_pred CccCEEEeccHHHHHHhhcCCccccceeEEEEEcCHHHHH--------------------------------------HH
Confidence 3467999999999999999988888899999999999999 99
Q ss_pred hCCCcccEEEEEeecccccccccCCCCC-CCcEEEec--CCC--CCCCcccCCccEEEEEEEE
Q psy1579 162 LNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKD--PNI--PDDVQKENDLNFQFKVFQK 219 (258)
Q Consensus 162 l~~p~~D~i~lT~I~~~fe~DtfFP~l~-~~f~li~~--~~i--~~~~~een~~~f~f~~y~r 219 (258)
|++|.||+|++|+|+..|+||+|||.++ ..++-+.. |.. ...+|+|+++++.+..|..
T Consensus 126 l~~p~~~~i~~T~I~~~~~cDtffP~id~s~y~~~~~~~pv~~~~~~~~~e~~lk~k~~~~e~ 188 (190)
T KOG1324|consen 126 LNSPRCDAIHITEIFQSFECDTFFPAIDTSSYEKWDKLFPVSENGLRVQEETFLKPKSAIFEE 188 (190)
T ss_pred HcCcCcceEEEEEecccCCcccccccCChHHhchhhhcCcccccccchhhhcCccceeecccc
Confidence 9999999999999999999999999998 33333211 111 1236788888888877654
No 2
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=100.00 E-value=1.5e-47 Score=323.05 Aligned_cols=158 Identities=39% Similarity=0.752 Sum_probs=142.5
Q ss_pred eEEEEEeccceeecCCCcccCChhhhhHHHHHHcCCCCCCccceEEEeccccccccCCCCCCCCCcEEEEcCcCCCCCCC
Q psy1579 2 LMITVFLKVQGFFFEACQIFYTRKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQL 81 (258)
Q Consensus 2 ~~I~a~~~~~giG~~g~lPW~l~~Dm~~F~~iT~~~~~~~~~naVIMGRKTweSip~~~rPL~~R~nvVlSr~~~~~~~~ 81 (258)
.||+|+++|++||.+|+|||++|+||+||+++|++ ++||||||||||+| .+|||+|.||||||+...
T Consensus 3 ~lI~A~~~n~~IG~~~~lPW~~p~Dl~~Fk~~T~~-------~~vIMGrkT~eslp--~~pLp~R~niVlSr~~~~---- 69 (161)
T PF00186_consen 3 SLIVAVDKNGGIGKDGKLPWHLPEDLKFFKKLTTG-------NPVIMGRKTFESLP--FRPLPGRINIVLSRNPDY---- 69 (161)
T ss_dssp EEEEEEETTSEEEBTTBSSSSSHHHHHHHHHHHTT-------CEEEEEHHHHHHST--GSSBTTSEEEEESSSTTS----
T ss_pred EEEEEECCCCcccCCCccccccHHHHHHHHHccCC-------ccEEEeeCchhcCC--ccCCCCCeEEEEEcCccc----
Confidence 58999999999999999999999999999999998 89999999999999 579999999999999874
Q ss_pred CCCcEEEeCCHHHHHHHHHhhccCCCCCcEEEEeChhhhcccccccccccCCcccccchhhhcccCCccchhhhhhhHhh
Q psy1579 82 TGPNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQES 161 (258)
Q Consensus 82 ~~~~v~v~~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~ 161 (258)
..+++.+++|+++|++.+++ ..++||||||++||+ ++
T Consensus 70 ~~~~~~~~~s~~~al~~~~~-----~~~~i~ViGG~~iy~--------------------------------------~~ 106 (161)
T PF00186_consen 70 EPEGVEVVSSLEEALELAKD-----KDEEIFVIGGAEIYE--------------------------------------QF 106 (161)
T ss_dssp CTTTSEEESSHHHHHHHHTT-----SESEEEEEE-HHHHH--------------------------------------HH
T ss_pred ccCCceeeCCHHHHHHHhhc-----cCCcEEEECCHHHHH--------------------------------------HH
Confidence 23588999999999996654 258999999999999 88
Q ss_pred hCCCcccEEEEEeecccccccccCCCCC-CCcEEEecCCCCCCCcccCCccEEEEEEEE
Q psy1579 162 LNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKDPNIPDDVQKENDLNFQFKVFQK 219 (258)
Q Consensus 162 l~~p~~D~i~lT~I~~~fe~DtfFP~l~-~~f~li~~~~i~~~~~een~~~f~f~~y~r 219 (258)
| ++||++|+|+|+..++||+|||.++ ++|+++....++. +++++++|+|++|+|
T Consensus 107 l--~~~d~l~lT~I~~~~~~D~~fP~~d~~~~~~~~~~~~~~--~~~~~~~~~f~~y~R 161 (161)
T PF00186_consen 107 L--PYADRLYLTRIDGDFEGDTFFPEIDESEFKLVSEEEHPK--DEENGIKYTFVTYER 161 (161)
T ss_dssp H--HGESEEEEEEESSESTTSEECSSCCTTTEEEEEEEEEEH--BEETTSEEEEEEEEE
T ss_pred H--HhCCeEEEEEEcCccccceECCCCChHHCEEEEEEeccc--CCCCCCCEEEEEEEC
Confidence 8 6999999999999999999999997 8999998865542 367999999999987
No 3
>PRK10769 folA dihydrofolate reductase; Provisional
Probab=100.00 E-value=3.3e-44 Score=302.28 Aligned_cols=157 Identities=30% Similarity=0.547 Sum_probs=138.9
Q ss_pred CeEEEEEeccceeecCCCcccCChhhhhHHHHHHcCCCCCCccceEEEeccccccccCCCCCCCCCcEEEEcCcCCCCCC
Q psy1579 1 MLMITVFLKVQGFFFEACQIFYTRKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQ 80 (258)
Q Consensus 1 ~~~I~a~~~~~giG~~g~lPW~l~~Dm~~F~~iT~~~~~~~~~naVIMGRKTweSip~~~rPL~~R~nvVlSr~~~~~~~ 80 (258)
+.||+|+++|++||.+|+|||++|+||+||+++|++ ++||||||||||+| +|||+|.|+|+||+..
T Consensus 2 i~~I~A~~~~~~IG~~~~lPW~~~~D~~~Fk~~T~~-------~~vIMGRkTyes~~---~plp~r~~iVlSr~~~---- 67 (159)
T PRK10769 2 ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLN-------KPVIMGRHTWESIG---RPLPGRKNIVISSQPG---- 67 (159)
T ss_pred EEEEEEECCCCcEecCCCcCcCCHHHHHHHHHHhCC-------CeEEEeHHHHHhhh---hhcCCCcEEEECCCCC----
Confidence 358999999999999999999999999999999998 79999999999997 7999999999999753
Q ss_pred CCCCcEEEeCCHHHHHHHHHhhccCCCCCcEEEEeChhhhcccccccccccCCcccccchhhhcccCCccchhhhhhhHh
Q psy1579 81 LTGPNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQE 160 (258)
Q Consensus 81 ~~~~~v~v~~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~ 160 (258)
..+++++++|+++|++.+++ .++||||||+++|+ +
T Consensus 68 -~~~~v~~~~~l~~~l~~~~~------~~~I~viGG~~iy~--------------------------------------~ 102 (159)
T PRK10769 68 -TDDRVTWVKSVDEALAAAGD------VPEIMVIGGGRVYE--------------------------------------Q 102 (159)
T ss_pred -CCCCEEEECCHHHHHHHhcC------CCCEEEECcHHHHH--------------------------------------H
Confidence 24678889999999986642 36799999999999 8
Q ss_pred hhCCCcccEEEEEeecccccccccCCCCC-CCcEEEecCCCCCCCcccCCccEEEEEEEEc
Q psy1579 161 SLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKDPNIPDDVQKENDLNFQFKVFQKE 220 (258)
Q Consensus 161 ~l~~p~~D~i~lT~I~~~fe~DtfFP~l~-~~f~li~~~~i~~~~~een~~~f~f~~y~r~ 220 (258)
+| ++||++++|.|+..|+||+|||.++ ++|+++.....+ .+++|++.|+|.+|+|+
T Consensus 103 ~l--~~~Del~lT~i~~~~~gD~~fP~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~y~r~ 159 (159)
T PRK10769 103 FL--PKAQRLYLTHIDAEVEGDTHFPDYEPDEWESVFSEFHD--ADEQNSHSYCFEILERR 159 (159)
T ss_pred HH--HHCCEEEEEEECccccCCEECCCCChHHCEEEEEEecc--ccCCCCccEEEEEEEeC
Confidence 88 5699999999999999999999998 789998765443 24678899999999983
No 4
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=100.00 E-value=1.8e-38 Score=309.17 Aligned_cols=174 Identities=34% Similarity=0.641 Sum_probs=151.4
Q ss_pred CeEEEEEeccceeecCCCcccCChhhhhHHHHHHcCC------CCCCccceEEEeccccccccCCCCCCCCCcEEEEcCc
Q psy1579 1 MLMITVFLKVQGFFFEACQIFYTRKDMAHFSRITKKT------ENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRN 74 (258)
Q Consensus 1 ~~~I~a~~~~~giG~~g~lPW~l~~Dm~~F~~iT~~~------~~~~~~naVIMGRKTweSip~~~rPL~~R~nvVlSr~ 74 (258)
+.+|+|++++++||.+|.|||++|+||+||+++|+.+ ++|++.++||||||||||+|...||||+|.||||||+
T Consensus 10 i~lIvA~~~n~~IG~~g~LPW~lpeDlk~Fk~~T~~~~~~~~~~~~~~~~~VIMGRkTyESip~~~rPLp~R~nIVLSr~ 89 (514)
T PTZ00164 10 FSIVVAVTLKRGIGIGNSLPWHIPEDMKFFSKITTYVREEKYEKSPKKQNAVIMGRKTWESIPKKFRPLKNRINVVLSRT 89 (514)
T ss_pred EEEEEEECCCCCeeCCCCCCcCCHHHHHHHHHHhccccccccccccCCCcEEEEcHHHHHhhhhhccccCCCeEEEEcCC
Confidence 3689999999999999999999999999999999953 4678889999999999999977799999999999998
Q ss_pred CCCCCCCCCCcEEEeCCHHHHHHHHHhhccCCCCCcEEEEeChhhhcccccccccccCCcccccchhhhcccCCccchhh
Q psy1579 75 SDLGSQLTGPNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFS 154 (258)
Q Consensus 75 ~~~~~~~~~~~v~v~~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 154 (258)
... ....+++.+.+|+++|++.+++.. ..++||||||+++|+
T Consensus 90 ~~~--~~~~~~v~v~~sl~eal~~lk~~~---~~~dI~VIGG~~Iy~--------------------------------- 131 (514)
T PTZ00164 90 LTE--EEADPGVLVFGSLEDALRLLAEDL---SIEKIFIIGGASVYR--------------------------------- 131 (514)
T ss_pred CCc--ccCCCCEEEeCCHHHHHHHHhccC---CCCcEEEEchHHHHH---------------------------------
Confidence 753 223467899999999999998631 347899999999999
Q ss_pred hhhhHhhhCCCcccEEEEEeecccccccccCCCCC-CCcEEEecCCCCCCCcccCCccEEEEEEEEcC
Q psy1579 155 VLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKDPNIPDDVQKENDLNFQFKVFQKEL 221 (258)
Q Consensus 155 ~l~~~~~l~~p~~D~i~lT~I~~~fe~DtfFP~l~-~~f~li~~~~i~~~~~een~~~f~f~~y~r~~ 221 (258)
++|++++||++++|.|+..++||+|||.++ +.|+++.... ..+++++.|+|.+|+|+.
T Consensus 132 -----~~L~~~lvDel~LTvI~~~geGD~~FP~~~~~~~~l~~~s~----~~~~~~v~y~f~~y~r~~ 190 (514)
T PTZ00164 132 -----EALSANLLDKIYLTRVNSEYECDVFFPKIPESFFIVAIVSQ----TFSTNGTSYDFVIYEKKN 190 (514)
T ss_pred -----HHhcCCCCCEEEEEEEEeccccCccCCCCCchhcEEEEEEE----eccCCCceEEEEEEeccC
Confidence 999999999999999988889999999987 6788876321 235688999999999986
No 5
>COG0262 FolA Dihydrofolate reductase [Coenzyme metabolism]
Probab=100.00 E-value=6.5e-38 Score=264.24 Aligned_cols=161 Identities=31% Similarity=0.560 Sum_probs=142.5
Q ss_pred eEEEEEeccceeecCCCcccCChhhhhHHHHHHcCCCCCCccceEEEeccccccccCCCCCCCCCcEEEEcCcCCCCCCC
Q psy1579 2 LMITVFLKVQGFFFEACQIFYTRKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQL 81 (258)
Q Consensus 2 ~~I~a~~~~~giG~~g~lPW~l~~Dm~~F~~iT~~~~~~~~~naVIMGRKTweSip~~~rPL~~R~nvVlSr~~~~~~~~ 81 (258)
++|+|++.++.||.+|+|||++++|++||++.|.+ +.||||||||||||.+.+||++|.|||+||+...
T Consensus 3 ~~i~A~s~dG~Ig~~~~lpW~~~~~~~~Fk~~t~~-------~~viMGRkT~esl~~~~~pl~~r~~iV~sr~~~~---- 71 (167)
T COG0262 3 ILIVAVSLDGVIGRDNSLPWHLPEDLAHFKATTLG-------KPVIMGRKTYESLPGEWRPLPGRKNIVLSRNPDL---- 71 (167)
T ss_pred EEEEEEcCCCeeecCCCCCCCChhHHHHHHHhhCC-------CCEEEccchhhhccccCCCCCCCeEEEEecCccc----
Confidence 68999999999999999999999999999999998 4699999999999988889999999999999443
Q ss_pred CCCc-EEEeCCHHHHHHHHHhhccCCCCCcEEEEeChhhhcccccccccccCCcccccchhhhcccCCccchhhhhhhHh
Q psy1579 82 TGPN-VTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQE 160 (258)
Q Consensus 82 ~~~~-v~v~~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~ 160 (258)
..++ +.+.+|+++|+..+++. ..++||||||+++|+ +
T Consensus 72 ~~e~~~~v~~s~~~al~~~~~~----~~~~i~IiGG~~l~~--------------------------------------~ 109 (167)
T COG0262 72 KTEGGVEVVDSIEEALLLLLKE----EGEDIFIIGGGELYR--------------------------------------Q 109 (167)
T ss_pred ccCCCEEEeCCHHHHHHHHhhc----CCCeEEEEcCHHHHH--------------------------------------H
Confidence 4456 99999999999999864 268999999999999 9
Q ss_pred hhCCCcccEEEEEeecccc-cccccCCCCC-CCcEEEecCCCCCCCcccCCccEEEEEEEE
Q psy1579 161 SLNSPYCDKVYVTQIHHHF-DCDTFFPSLS-DKFQLIKDPNIPDDVQKENDLNFQFKVFQK 219 (258)
Q Consensus 161 ~l~~p~~D~i~lT~I~~~f-e~DtfFP~l~-~~f~li~~~~i~~~~~een~~~f~f~~y~r 219 (258)
+|..+++|++++|.||..+ +||+|||..+ ..|+++..+ ...+.+.+.++|..|++
T Consensus 110 ~l~~~l~Del~lt~ip~~lg~Gd~~Fp~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 166 (167)
T COG0262 110 FLPAGLADELILTIIPVLLGEGDTLFPEGDPADWELVSSE----DADEKGGYFYTFESYER 166 (167)
T ss_pred HhccccccEEEEEEeeeeccCCCccCCCCCccceEEeeee----ecccCCceeEEEEEeec
Confidence 9988899999999999999 9999999965 789988775 11345777788888765
No 6
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=100.00 E-value=5.5e-34 Score=277.05 Aligned_cols=156 Identities=17% Similarity=0.361 Sum_probs=131.8
Q ss_pred CeEEEEEeccceeecCCCcccCChhhhhHHHHHHcCCCCCCccceEEEeccccccccCCCCCCCCCcEEEEcCcCCCCCC
Q psy1579 1 MLMITVFLKVQGFFFEACQIFYTRKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQ 80 (258)
Q Consensus 1 ~~~I~a~~~~~giG~~g~lPW~l~~Dm~~F~~iT~~~~~~~~~naVIMGRKTweSip~~~rPL~~R~nvVlSr~~~~~~~ 80 (258)
+.||+|+++++|||.+|.|||++|+||+||+++|++ ++||||||||||+| +|||+|.|||+||+.... .
T Consensus 2 i~lI~A~~~n~~IG~~~~LPW~~peDl~~Fk~~T~~-------~tVVMGRkTyEsi~---~~Lp~R~niVlSr~~~~~-~ 70 (505)
T PRK00478 2 IKLIWCEDLNFGIAKNNQIPWKIDEELNHFHQTTTN-------HTIVMGYNTFQAMN---KILANQANIVISKKHQRE-L 70 (505)
T ss_pred EEEEEEECCCCcccCCCCCCCCCHHHHHHHHHHhCC-------CeEEEehHHHHhhh---hcCCCCeEEEECCCCccc-c
Confidence 359999999999999999999999999999999998 79999999999998 689999999999986531 0
Q ss_pred CCCCcEEEeCCHHHHHHHHHhhccCCCCCcEEEEeChhhhcccccccccccCCcccccchhhhcccCCccchhhhhhhHh
Q psy1579 81 LTGPNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQE 160 (258)
Q Consensus 81 ~~~~~v~v~~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~ 160 (258)
...+++++++|+++|++... .++||||||+++|+ +
T Consensus 71 ~~~~~v~v~~sl~~~L~~~~-------~~dI~IIGG~~Ly~--------------------------------------~ 105 (505)
T PRK00478 71 KNNNELFVFNDLKKLLIDFS-------NVDLFIIGGKKTIE--------------------------------------Q 105 (505)
T ss_pred CCCCCeEEECCHHHHHHhCC-------CCCEEEEChHHHHH--------------------------------------H
Confidence 12368999999999976421 35799999999999 8
Q ss_pred hhCCCcccEEEEEeecccccccccCCCCC-CCcEEEecCCCCCCCcccCCccEEEEEEEEcCCCC
Q psy1579 161 SLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKDPNIPDDVQKENDLNFQFKVFQKELAPK 224 (258)
Q Consensus 161 ~l~~p~~D~i~lT~I~~~fe~DtfFP~l~-~~f~li~~~~i~~~~~een~~~f~f~~y~r~~~~~ 224 (258)
++ ++||++|+|.|+..++||+||+ ++ ++|+++..... .+|.+.+|+|+..-+
T Consensus 106 ~l--~~vDel~lT~Ip~~~g~d~~f~-~~~~~~~Lv~~~~~---------~~~v~~~Y~rk~~~~ 158 (505)
T PRK00478 106 FI--KYADQLIISKLNADYKCDLFVN-LNYDDFSLVQTKEY---------DQFVVEYWEKKPNTK 158 (505)
T ss_pred HH--HhCCEEEEEEeccccCCCCCCC-CChhhheeeeeEEc---------CcEEEEEEEecCCCC
Confidence 98 5799999999999999999984 44 78988765322 238999999885544
No 7
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=99.97 E-value=6.6e-31 Score=217.56 Aligned_cols=156 Identities=35% Similarity=0.672 Sum_probs=135.5
Q ss_pred CeEEEEEeccceeecCCCcccCChhhhhHHHHHHcCCCCCCccceEEEeccccccccCCCCCCCCCcEEEEcCcCCCCCC
Q psy1579 1 MLMITVFLKVQGFFFEACQIFYTRKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQ 80 (258)
Q Consensus 1 ~~~I~a~~~~~giG~~g~lPW~l~~Dm~~F~~iT~~~~~~~~~naVIMGRKTweSip~~~rPL~~R~nvVlSr~~~~~~~ 80 (258)
+.+|+|++.++.||.++++||..++||++|++.|++ +++||||||||+++. +|+|+|.++|+||+...
T Consensus 1 i~~~~a~sldG~i~~~~~~~W~~~~d~~~f~~~~~~-------~~ivmGR~Tye~~~~--~~~~~~~~~V~S~~~~~--- 68 (158)
T cd00209 1 ISLIVAVDENGVIGKDNKLPWHLPEDLKHFKKTTTG-------NPVIMGRKTFESIPR--RPLPGRTNIVLSRQLDY--- 68 (158)
T ss_pred CEEEEEECCCCceeCCCCcCcCCHHHHHHHHHHHCC-------CeEEEChhhHhhCCC--cCCCCCCEEEEccCCCc---
Confidence 578999999999999888999999999999999875 899999999999985 58999999999998763
Q ss_pred CCCCcEEEeCCHHHHHHHHHhhccCCCCCcEEEEeChhhhcccccccccccCCcccccchhhhcccCCccchhhhhhhHh
Q psy1579 81 LTGPNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQE 160 (258)
Q Consensus 81 ~~~~~v~v~~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~ 160 (258)
...+++++.++++++++.|+ . ..++|||+||+++|+ +
T Consensus 69 ~~~~~~~~~~~~~~~v~~lk-~----~~~~I~v~GG~~l~~--------------------------------------~ 105 (158)
T cd00209 69 QDAEGVEVVHSLEEALELAE-N----TVEEIFVIGGAEIYK--------------------------------------Q 105 (158)
T ss_pred CCCCCeEEECCHHHHHHHHh-c----CCCeEEEECcHHHHH--------------------------------------H
Confidence 23578888889999999998 3 367899999999999 8
Q ss_pred hhCCCcccEEEEEeecccccccccCCCCC-CCcEEEe-cCCCCCCCcccCCccEEEEEEE
Q psy1579 161 SLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIK-DPNIPDDVQKENDLNFQFKVFQ 218 (258)
Q Consensus 161 ~l~~p~~D~i~lT~I~~~fe~DtfFP~l~-~~f~li~-~~~i~~~~~een~~~f~f~~y~ 218 (258)
++++ +|+++++.+|..++||++||... ..|++++ ...++ +++.+|.|.+|+
T Consensus 106 ~l~~--iDe~~l~v~pv~~~G~~~f~~~~~~~l~l~~~~~~~~-----~~~~~~~~~~~~ 158 (158)
T cd00209 106 ALPY--ADRLYLTRIHAEFEGDTFFPEIDESEWELVSEEEVFE-----EDGYSYTFETYE 158 (158)
T ss_pred HHhh--CCEEEEEEECCcccCCEECCCCCchhcEEEEEEeecc-----cCCccEEEEEEC
Confidence 9866 99999999999999999999874 7899987 54443 355788988873
No 8
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=99.19 E-value=2.6e-10 Score=96.00 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=103.4
Q ss_pred EEEeccce-eecCCCcccCC-hhhhhHHHHHHcCCCCCCccceEEEeccccccccC----CCCCC---------CCCcEE
Q psy1579 5 TVFLKVQG-FFFEACQIFYT-RKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPE----KFRPL---------PGRYNV 69 (258)
Q Consensus 5 ~a~~~~~g-iG~~g~lPW~l-~~Dm~~F~~iT~~~~~~~~~naVIMGRKTweSip~----~~rPL---------~~R~nv 69 (258)
+|++=.|- -++++...|.. ++|.+++.++... .+++||||+|++.... +..+. +....|
T Consensus 7 ~a~SlDG~ia~~~~~~~~~~~~~~~~~~~~l~~~------~dail~G~~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (200)
T PF01872_consen 7 MAMSLDGKIAGPDGDSGWLSGDEDREFLHELRSE------ADAILVGRNTVRADNPSLTVRWPGDPPPRERGRAKQPPKV 80 (200)
T ss_dssp EEEETTSEESSTTSCGCTSSSHHHHHHHHHHHHH------CSEEEEEHHHHHHHTHHTSSHSSTSSCHHCTTCHSSSEEE
T ss_pred EeeccCcCEECCCCCccCCCCHHHHHHHHHHHhh------CCEEEeccchhhhcCccccccCccccchhhhhhccCCeEE
Confidence 34444444 45788888874 5566777777754 3899999999986322 11112 456799
Q ss_pred EEcCcCCCCC--C---CCCCcEEEeCC---------------HHHHHHHHHhhccCCCCCcEEEEeChhhhccccccccc
Q psy1579 70 VLTRNSDLGS--Q---LTGPNVTTTSS---------------LDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNR 129 (258)
Q Consensus 70 VlSr~~~~~~--~---~~~~~v~v~~s---------------l~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~~~~~~~~ 129 (258)
|+|++..... . ...+-+.+++. +.++++.|++. ..++|+|.||+++..
T Consensus 81 V~s~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~l~v~~dl~~~l~~L~~~----g~~~i~v~GG~~l~~-------- 148 (200)
T PF01872_consen 81 VVSRSLKLPPDARLFNDDKPVLVITSEKAPDEYLERLRVRVDLEEALRRLKER----GGKDILVEGGGSLNG-------- 148 (200)
T ss_dssp EEESTCCTTTTCCCCSSSSSEEEEEESTSSHHHHHHHHESEHHHHHHHHHHHT----TTSEEEEEEHHHHHH--------
T ss_pred EEecccccccccccccCCCceEEEeecccccccccceEEecCHHHHHHHHHhc----CCCEEEEechHHHHH--------
Confidence 9999886321 1 11223344444 99999999875 579999999999999
Q ss_pred ccCCcccccchhhhcccCCccchhhhhhhHhhhCCCcccEEEEEeecccc-c-ccccCCCCC-C--CcEEEecCCCC
Q psy1579 130 LSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHF-D-CDTFFPSLS-D--KFQLIKDPNIP 201 (258)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~l~~p~~D~i~lT~I~~~f-e-~DtfFP~l~-~--~f~li~~~~i~ 201 (258)
++|++.++||++++..|..+ . +.++|+... . +|++++...+.
T Consensus 149 ------------------------------~~l~~gLvDEl~l~i~Pv~lG~~~~~lf~~~~~~~~~l~l~~~~~~~ 195 (200)
T PF01872_consen 149 ------------------------------SFLRAGLVDELSLTIAPVLLGGGGPPLFDGGSPRSLRLELVSVRTFG 195 (200)
T ss_dssp ------------------------------HHHHTT--SEEEEEEESEE-SSTSEESSTSSTSSSEEEEEEEEEEET
T ss_pred ------------------------------HHHhCCCCCEEEEEEeeEEeCCCCCCCCCCCCCcccceEEEEEEEeC
Confidence 99999999999999999877 4 678999775 3 58887765443
No 9
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=98.90 E-value=1.7e-08 Score=86.14 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=83.1
Q ss_pred EEEEEecccee-ecCCCcccC-ChhhhhHHHHHHcCCCCCCccceEEEeccccccc----cCC-------CCCC------
Q psy1579 3 MITVFLKVQGF-FFEACQIFY-TRKDMAHFSRITKKTENSNRVNAVIMGRKTWDSI----PEK-------FRPL------ 63 (258)
Q Consensus 3 ~I~a~~~~~gi-G~~g~lPW~-l~~Dm~~F~~iT~~~~~~~~~naVIMGRKTweSi----p~~-------~rPL------ 63 (258)
+..|++-.|-| +.+|..-|. -+++..++.++-.. .++|||||+||+.- -.+ ..|+
T Consensus 7 ~~~a~SlDG~ia~~~g~~~wi~~~~~~~~~~~lr~~------~DailvG~~T~~~d~p~l~~r~~~~~~~~~P~~vv~~~ 80 (216)
T TIGR00227 7 LKYAMSLDGKIATASGESSWITSEEARRDVHQLRAQ------SDAILVGSGTVLADDPRLTVRWVELDELRNPVRVVLDS 80 (216)
T ss_pred EEEEEcCCCCeeCCCCcccCcCCHHHHHHHHHHHhH------cCEEEECcCeEeccCCcceeeccCcccCCCCeEEEECC
Confidence 34555555544 466777786 45555666666654 48999999999962 111 0111
Q ss_pred -----------C-CCcEEEEcCcCCCCCC---CCCCcEEE----eC--CHHHHHHHHHhhccCCCCCcEEEEeChhhhcc
Q psy1579 64 -----------P-GRYNVVLTRNSDLGSQ---LTGPNVTT----TS--SLDQAIDLLRHKKSKGEIENVWVIGGSSIYKL 122 (258)
Q Consensus 64 -----------~-~R~nvVlSr~~~~~~~---~~~~~v~v----~~--sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~ 122 (258)
. ....+|+|++...... ....++.+ .. ++.++++.|++. ..++|||.||+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~~~~~g~~~i~~~~~~~dl~~~l~~L~~~----g~~~llveGG~~L~~- 155 (216)
T TIGR00227 81 QLRVPPTARLLNDDAPTWVATTEPADEEKVKELEDFGVEVLVLETKRVDLKKLMEILYEE----GINSVMVEGGGTLNG- 155 (216)
T ss_pred CCCCCcccccccCCCCEEEEEcCCCCHHHHHHHHHCCcEEEECCCCCcCHHHHHHHHHHc----CCCEEEEeeCHHHHH-
Confidence 0 1234444443211000 01112322 23 789999999764 578999999999999
Q ss_pred cccccccccCCcccccchhhhcccCCccchhhhhhhHhhhCCCcccEEEEEeeccccc
Q psy1579 123 TEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFD 180 (258)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~l~~p~~D~i~lT~I~~~fe 180 (258)
++++++++|+++++..|..+.
T Consensus 156 -------------------------------------~fl~~~LvDel~l~i~P~ilG 176 (216)
T TIGR00227 156 -------------------------------------SLLKEGLVDELIVYIAPKLLG 176 (216)
T ss_pred -------------------------------------HHHHCCCCCEEEEEECchhhC
Confidence 899999999999999998775
No 10
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=98.89 E-value=6.6e-08 Score=83.37 Aligned_cols=145 Identities=17% Similarity=0.134 Sum_probs=91.5
Q ss_pred EEEecccee-ecCCCcccCC-hhhhhHHHHHHcCCCCCCccceEEEeccccccc-cCC-C-C-C--C-CCCcEEEEcCcC
Q psy1579 5 TVFLKVQGF-FFEACQIFYT-RKDMAHFSRITKKTENSNRVNAVIMGRKTWDSI-PEK-F-R-P--L-PGRYNVVLTRNS 75 (258)
Q Consensus 5 ~a~~~~~gi-G~~g~lPW~l-~~Dm~~F~~iT~~~~~~~~~naVIMGRKTweSi-p~~-~-r-P--L-~~R~nvVlSr~~ 75 (258)
+|.+-.|-| +.+|.. |.. +++..++.++-.. .++|+||++|++.- |.- - | + . +....||++++.
T Consensus 9 ~a~SlDG~Ia~~~g~~-~it~~~~~~~~~~lR~~------~DaiLvG~~T~~~d~p~l~~~R~~~~~~~~P~~vVld~~~ 81 (217)
T PRK05625 9 AAMSADGKLATKTRYS-RISGPEDFDRVHELRAE------VDAVMVGIGTVLADDPSLTVHRYAAGKPENPIRVVVDSSA 81 (217)
T ss_pred eEecCCCceeCCCCCC-CcCCHHHHHHHHHHHHH------CCEEEEccceEEccCCcceeeeccCCCCCCCEEEEECCCC
Confidence 445555544 467777 874 5677777776654 48999999999862 100 0 0 0 0 022345555433
Q ss_pred CCCC-----CC--------------------CCCcEEEe------CCHHHHHHHHHhhccCCCCCcEEEEeChhhhcccc
Q psy1579 76 DLGS-----QL--------------------TGPNVTTT------SSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTE 124 (258)
Q Consensus 76 ~~~~-----~~--------------------~~~~v~v~------~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~~~ 124 (258)
.... +. ...++.+. -++.++++.|++. +.++|||.||+++..
T Consensus 82 ~l~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~~~~v~~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~~l~~--- 154 (217)
T PRK05625 82 RTPPDARILDGPAKTIVAVSEAAPSEKVEELEKKGAEVIVAGGERVDLPDLLEDLYER----GIKRLMVEGGGTLIW--- 154 (217)
T ss_pred CCCCcccccCCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHC----CCCEEEEecCHHHHH---
Confidence 2210 00 11122222 3778888888764 578999999999999
Q ss_pred cccccccCCcccccchhhhcccCCccchhhhhhhHhhhCCCcccEEEEEeeccccc---ccccCCCC-----C--CCcEE
Q psy1579 125 PLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFD---CDTFFPSL-----S--DKFQL 194 (258)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~l~~p~~D~i~lT~I~~~fe---~DtfFP~l-----~--~~f~l 194 (258)
++|+++++|+++++..|..+. +-.+|+.. . ..|++
T Consensus 155 -----------------------------------~fl~~~LvDel~l~i~P~ilG~~~g~~~~~~~~~~~~~~~~~l~l 199 (217)
T PRK05625 155 -----------------------------------SMFKEGLVDEVRVTVGPKIIGGKDAPTLADGEGFIEEEDPLKLEL 199 (217)
T ss_pred -----------------------------------HHHHCCCCcEEEEEEcCeeecCCCCCCccCCCCcCccccccccEE
Confidence 999999999999999998775 55677642 1 35666
Q ss_pred EecC
Q psy1579 195 IKDP 198 (258)
Q Consensus 195 i~~~ 198 (258)
.+..
T Consensus 200 ~~~~ 203 (217)
T PRK05625 200 AKVC 203 (217)
T ss_pred eEEE
Confidence 5544
No 11
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=98.71 E-value=1.1e-07 Score=88.15 Aligned_cols=128 Identities=13% Similarity=0.113 Sum_probs=80.4
Q ss_pred EEEeccce-eecCCCcccCC-hhhhhHHHHHHcCCCCCCccceEEEeccccccccCC---CCCC--CCCcEEEEcCcCCC
Q psy1579 5 TVFLKVQG-FFFEACQIFYT-RKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEK---FRPL--PGRYNVVLTRNSDL 77 (258)
Q Consensus 5 ~a~~~~~g-iG~~g~lPW~l-~~Dm~~F~~iT~~~~~~~~~naVIMGRKTweSip~~---~rPL--~~R~nvVlSr~~~~ 77 (258)
.|++-.|- -+.+|...|.. +++..++.++... .++++|||+|++.-... .+|- +....||++++...
T Consensus 147 ~a~SLDG~Ia~~~g~~~wi~~~~~~~~~~~lra~------~DailvG~~T~~~d~p~l~~r~~~~~~~P~~vV~d~~~~~ 220 (344)
T TIGR00326 147 LAASLDGKIATASGESKWITSEAARTDAQQLRAQ------SDAILVGGGTVKADNPALTARLDEATEQPLRVVLDTQLRI 220 (344)
T ss_pred EeeCCCCCccccCCCccccCCHHHHHHHHHHHHH------CCEEEEChhhHhHhCCcccccCCCCCCCCeEEEEcCCCCC
Confidence 34444443 44677888975 4445555555444 48999999999842110 1111 11233444444321
Q ss_pred CC----------------------CCCCCcEEEe----CCHHHHHHHHHhhccCCCCCcEEEEeChhhhccccccccccc
Q psy1579 78 GS----------------------QLTGPNVTTT----SSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLS 131 (258)
Q Consensus 78 ~~----------------------~~~~~~v~v~----~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~~~~~~~~~~ 131 (258)
.. .....++.+. .|+.++++.|++. +.++|||.||+++..
T Consensus 221 ~~~~~~~~~~~~~~V~s~~~~~~~~~~~~~v~v~~~~~~dl~~~l~~L~~~----g~~~ilveGG~~L~~---------- 286 (344)
T TIGR00326 221 PEFAKLIPQIAPTWIFTTARDKKKRLEAFEVNIFPLEKVTIREVMTQLGKR----GINSVLVEGGPNLLG---------- 286 (344)
T ss_pred CCcchhhcCCCCEEEEECChhhhhHHhhCCeEEecCCCCCHHHHHHHHHhC----CCCEEEEeeHHHHHH----------
Confidence 00 0011122221 2788889888754 578999999999999
Q ss_pred CCcccccchhhhcccCCccchhhhhhhHhhhCCCcccEEEEEeeccccc
Q psy1579 132 TFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFD 180 (258)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~l~~p~~D~i~lT~I~~~fe 180 (258)
++++++++|+++++..|..+.
T Consensus 287 ----------------------------~ll~~gLVDEl~l~i~P~ilG 307 (344)
T TIGR00326 287 ----------------------------SFLDEGLVDELIIYIAPKLLG 307 (344)
T ss_pred ----------------------------HHHHCCCCeEEEEEEccEEec
Confidence 999999999999999997764
No 12
>PRK14059 hypothetical protein; Provisional
Probab=98.10 E-value=0.00032 Score=63.34 Aligned_cols=162 Identities=14% Similarity=0.096 Sum_probs=101.9
Q ss_pred EEEEEeccceeecCCCcccC-ChhhhhHHHHHHcCCCCCCccceEEEeccccccccCCC----------C---CC-CCCc
Q psy1579 3 MITVFLKVQGFFFEACQIFY-TRKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKF----------R---PL-PGRY 67 (258)
Q Consensus 3 ~I~a~~~~~giG~~g~lPW~-l~~Dm~~F~~iT~~~~~~~~~naVIMGRKTweSip~~~----------r---PL-~~R~ 67 (258)
+.+|++-.|-|..+|.--|- -++|.++.-++-.. .+||+.|.+|-..=-... | -. +.-.
T Consensus 35 lk~A~SlDGkia~~g~s~~It~~~~r~~~h~lRa~------~DAIlVG~~Tv~~DnP~L~r~~~~~~~~R~~~g~~~~P~ 108 (251)
T PRK14059 35 ANFVTSLDGAATVDGRSGGLGGPADRRVFGLLRAL------ADVVVVGAGTVRAENYGGVRLSAAARQQRQARGQAEVPP 108 (251)
T ss_pred EEEEEcCcccccCCCCCcCcCCHHHHHHHHHHHHH------CCEEEEchhhhhhcCccccccCHHHHHHHHhcCCCCCCc
Confidence 45566666667777776676 46777777766665 389999999975311000 0 00 1223
Q ss_pred EEEEcCcCCCCC-----CCCC-C----------------------cEEE-e-----CCHHHHHHHHHhhccCCCCCcEEE
Q psy1579 68 NVVLTRNSDLGS-----QLTG-P----------------------NVTT-T-----SSLDQAIDLLRHKKSKGEIENVWV 113 (258)
Q Consensus 68 nvVlSr~~~~~~-----~~~~-~----------------------~v~v-~-----~sl~~ai~~l~~~~~~~~~~~I~V 113 (258)
.||++++..... +... + ++.+ . -|+.++++.|+.. ...+|||
T Consensus 109 ~vVld~~~~lp~~~~lf~~~~~~~iv~t~~~~~~~~~~~l~~~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~~~vlv 184 (251)
T PRK14059 109 IAVVSRSGDLDPDSRLFTETEVPPLVLTCAAAAADRRRRLAGLAEVADVVVAGPDTVDLAAAVAALAAR----GLRRILC 184 (251)
T ss_pred EEEecCCcCCCccchhhccCCCCeEEEEcCCCCHHHHHHHhhccCCcEEEECCCCCCCHHHHHHHHHhC----CCCEEEE
Confidence 467766544310 0000 0 1111 1 2677888888754 5789999
Q ss_pred EeChhhhcccccccccccCCcccccchhhhcccCCccchhhhhhhHhhhCCCcccEEEEEeeccccccc--ccCCCC-C-
Q psy1579 114 IGGSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCD--TFFPSL-S- 189 (258)
Q Consensus 114 iGGa~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~l~~p~~D~i~lT~I~~~fe~D--tfFP~l-~- 189 (258)
-||+++.. +++++.++|+++++..|..+.+. ++|+.. .
T Consensus 185 eGG~~l~~--------------------------------------~fl~~~LvDel~l~i~P~ilG~g~~~~f~~~~~~ 226 (251)
T PRK14059 185 EGGPTLLG--------------------------------------QLLAADLVDELCLTIAPVLAGGVARRIVTGPGQA 226 (251)
T ss_pred echHHHHH--------------------------------------HHHHcCCCeEEEEEEccEEECCCCcccCCCCCCC
Confidence 99999999 99999999999999999888433 566643 2
Q ss_pred -CCcEEEecCCCCCCCcccCCccEEEEEEEEc
Q psy1579 190 -DKFQLIKDPNIPDDVQKENDLNFQFKVFQKE 220 (258)
Q Consensus 190 -~~f~li~~~~i~~~~~een~~~f~f~~y~r~ 220 (258)
..|++......+ +| ..|..|++.
T Consensus 227 ~~~l~L~~~~~~~------~g--~v~l~Y~~~ 250 (251)
T PRK14059 227 PTRMRLAHVLTDD------DG--YLFLRYVRA 250 (251)
T ss_pred CcCeEEEEEEEcC------CC--EEEEEEEeC
Confidence 567776543222 34 577888754
No 13
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=97.90 E-value=0.00088 Score=58.35 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=84.7
Q ss_pred EEEEEeccceeec-CCCcccC-ChhhhhHHHHHHcCCCCCCccceEEEecccccc----ccCCCCC--CCCCcEEEEcCc
Q psy1579 3 MITVFLKVQGFFF-EACQIFY-TRKDMAHFSRITKKTENSNRVNAVIMGRKTWDS----IPEKFRP--LPGRYNVVLTRN 74 (258)
Q Consensus 3 ~I~a~~~~~giG~-~g~lPW~-l~~Dm~~F~~iT~~~~~~~~~naVIMGRKTweS----ip~~~rP--L~~R~nvVlSr~ 74 (258)
+.+|++-.|-|.. +|. -|- -++|.+++.++-.. .+||+.|..|-.. +.-+. | -.....||++++
T Consensus 5 lk~A~SlDGkia~~~g~-~~it~~~~r~~~h~lRa~------~DaIlvG~~Tv~~D~P~L~~r~-~~~~~~P~rvVld~~ 76 (210)
T TIGR01508 5 VNVAMSLDGKLATINRD-SRISCEEDLIRVHEIRAE------VDAIMVGIGTVLADDPRLTVKK-IKSDRNPVRVVVDSK 76 (210)
T ss_pred EEEeecCcccccCCCCC-cCcCCHHHHHHHHHHHHH------CCEEEECcCeEEecCCcccccC-cccCCCCEEEEECCC
Confidence 5567776776664 445 443 46777777777765 4899999999853 22110 1 112356777776
Q ss_pred CCCCC-----CCCCC--------------------cE--EEe----CCHHHHHHHHHhhccCCCCCcEEEEeChhhhccc
Q psy1579 75 SDLGS-----QLTGP--------------------NV--TTT----SSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLT 123 (258)
Q Consensus 75 ~~~~~-----~~~~~--------------------~v--~v~----~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~~ 123 (258)
.+... +...+ ++ ... -++.++++.|++. ..++|||-||+++..
T Consensus 77 ~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~~l~~-- 150 (210)
T TIGR01508 77 LRVPLNARILNKDAKTIIATSEDEPEEKVEELEDKGVEVVKFGEGRVDLKKLLDILYDK----GVRRLMVEGGGTLIW-- 150 (210)
T ss_pred CCCCCcchhhcCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHC----CCCEEEEeeCHHHHH--
Confidence 64420 00000 11 111 1567777777654 679999999999999
Q ss_pred ccccccccCCcccccchhhhcccCCccchhhhhhhHhhhCCCcccEEEEEeeccccc
Q psy1579 124 EPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFD 180 (258)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~l~~p~~D~i~lT~I~~~fe 180 (258)
++++++++||++++..|..+.
T Consensus 151 ------------------------------------~fl~~~LvDel~l~i~P~ilG 171 (210)
T TIGR01508 151 ------------------------------------SLFKENLVDEISVYIAPKIFG 171 (210)
T ss_pred ------------------------------------HHHHCCCCcEEEEEEcCEEEc
Confidence 999999999999999998775
No 14
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=97.40 E-value=0.01 Score=56.75 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=81.3
Q ss_pred EEEEEeccceeec-CCCcccCChhhhhHHHHHHcCCCCCCccceEEEeccccccccCC--CC-----CCCCCcEEEEcCc
Q psy1579 3 MITVFLKVQGFFF-EACQIFYTRKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEK--FR-----PLPGRYNVVLTRN 74 (258)
Q Consensus 3 ~I~a~~~~~giG~-~g~lPW~l~~Dm~~F~~iT~~~~~~~~~naVIMGRKTweSip~~--~r-----PL~~R~nvVlSr~ 74 (258)
+-+|++-.|-|.. +|.-...-+++.++.-++-.. .+||++|..|--.=-.. -| |-++-..||++++
T Consensus 144 lK~A~SLDGkIA~~~G~s~IT~~~ar~~vh~lRa~------~DAILVG~~Tv~~DnP~LtvR~~~~~~~~~P~RVVlD~~ 217 (360)
T PRK14719 144 SNVGMTLDGKLATIENDSRISGENDLKRVHEIRKD------VDAIMVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSN 217 (360)
T ss_pred EEEEEcCcCcccCCCCCCCcCCHHHHHHHHHHHHH------CCEEEECcchHhhcCCCCccccccccCCCCCEEEEEeCC
Confidence 3455555565553 333223346777777776665 48999999998321100 01 1122345666665
Q ss_pred CCCCC-----CCCCC-----------------------cEEEe------CCHHHHHHHHHhhccCCCCCcEEEEeChhhh
Q psy1579 75 SDLGS-----QLTGP-----------------------NVTTT------SSLDQAIDLLRHKKSKGEIENVWVIGGSSIY 120 (258)
Q Consensus 75 ~~~~~-----~~~~~-----------------------~v~v~------~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy 120 (258)
..... +...+ ++.+. -|+.++++.|... +..+|||-||+++.
T Consensus 218 l~lp~~~~lf~~~~~~ii~t~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~dl~~~l~~L~~~----gi~svlVEGG~~l~ 293 (360)
T PRK14719 218 LKIPLNARVLNKDAKTVIATTTPISDEKEEKIRKLKEMGITVLQAGVQKVDLRKIMNEIYKM----GINKILLEGGGTLN 293 (360)
T ss_pred CCCCcchhhhcCCCCEEEEEcccccccchHHHHHHHhcCcEEEEcCCCCCCHHHHHHHHHhC----CCCEEEEEeCHHHH
Confidence 43210 00001 11111 1567777777654 68999999999999
Q ss_pred cccccccccccCCcccccchhhhcccCCccchhhhhhhHhhhCCCcccEEEEEeecccccc
Q psy1579 121 KLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDC 181 (258)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~l~~p~~D~i~lT~I~~~fe~ 181 (258)
. ++++..++|+++++..|..+.+
T Consensus 294 ~--------------------------------------sfl~~~LvDel~l~iaP~ilGg 316 (360)
T PRK14719 294 W--------------------------------------GMFKENLINEVRVYIAPKVFGG 316 (360)
T ss_pred H--------------------------------------HHHHCCCceEEEEEEccEEECC
Confidence 9 9999999999999999987754
No 15
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=97.24 E-value=0.0094 Score=56.67 Aligned_cols=130 Identities=13% Similarity=0.118 Sum_probs=85.3
Q ss_pred EEEEeccceee-cCCCcccC-ChhhhhHHHHHHcCCCCCCccceEEEeccccccccCCC--C-C-C-------------C
Q psy1579 4 ITVFLKVQGFF-FEACQIFY-TRKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKF--R-P-L-------------P 64 (258)
Q Consensus 4 I~a~~~~~giG-~~g~lPW~-l~~Dm~~F~~iT~~~~~~~~~naVIMGRKTweSip~~~--r-P-L-------------~ 64 (258)
-.|++-.+-|. .+|.--|. -++|.+++.++-.. .++|++|..|-..=-... | | + +
T Consensus 152 k~A~SlDGkia~~~g~s~~is~~~~~~~~h~lRa~------~DaIlVGa~Tv~~D~P~Lt~R~~~~~~~~~~~~~~~~~~ 225 (367)
T PRK10786 152 KLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ------SHAILTSSATVLADDPALTVRWSELDAQTQALYPQENLR 225 (367)
T ss_pred EEeecCCCCccCCCCcccccCCHHHHHHHHHHHhH------CCEEEECcChHhhcCCCccccccccccccccccccccCC
Confidence 34555555555 56666675 57888888887765 489999999985311110 1 0 0 1
Q ss_pred CCcEEEEcCcCCCCC-----CCCCCcEE------------------Ee-----CCHHHHHHHHHhhccCCCCCcEEEEeC
Q psy1579 65 GRYNVVLTRNSDLGS-----QLTGPNVT------------------TT-----SSLDQAIDLLRHKKSKGEIENVWVIGG 116 (258)
Q Consensus 65 ~R~nvVlSr~~~~~~-----~~~~~~v~------------------v~-----~sl~~ai~~l~~~~~~~~~~~I~ViGG 116 (258)
.-..||++++..... +...+... +. -|+.++++.|.+. ...+|||-||
T Consensus 226 ~P~rvV~d~~g~l~~~~~~f~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~vdl~~~L~~L~~~----Gi~~l~veGG 301 (367)
T PRK10786 226 QPVRIVIDSQNRVTPEHRIVQQPGETWLARTQEDSREWPETVRTLLLPEHNGHLDLVVLMMQLGKQ----QINSIWVEAG 301 (367)
T ss_pred CCcEEEEcCCCCCCchhhhhcCCCCEEEEEcCchhhhhhcCceEEEEeCCCCCcCHHHHHHHHHhC----CCCEEEEeeC
Confidence 124688888764320 00111111 11 1567778777654 6899999999
Q ss_pred hhhhcccccccccccCCcccccchhhhcccCCccchhhhhhhHhhhCCCcccEEEEEeecccccc
Q psy1579 117 SSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDC 181 (258)
Q Consensus 117 a~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~l~~p~~D~i~lT~I~~~fe~ 181 (258)
+.+.. +++++.++|+++++..|..+.+
T Consensus 302 ~~l~~--------------------------------------~~l~~~lvDe~~~~~aP~~~G~ 328 (367)
T PRK10786 302 PTLAG--------------------------------------ALLQAGLVDELIVYIAPKLLGS 328 (367)
T ss_pred HHHHH--------------------------------------HHHHCCCccEEEEEEcceeccC
Confidence 99999 9999999999999999977743
No 16
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=96.96 E-value=0.063 Score=48.12 Aligned_cols=134 Identities=15% Similarity=0.184 Sum_probs=88.4
Q ss_pred EEEeccceee-cCCCcccC-ChhhhhHHHHHHcCCCCCCccceEEEecccccc-ccC---CCCCC---CCCcEEEEcCcC
Q psy1579 5 TVFLKVQGFF-FEACQIFY-TRKDMAHFSRITKKTENSNRVNAVIMGRKTWDS-IPE---KFRPL---PGRYNVVLTRNS 75 (258)
Q Consensus 5 ~a~~~~~giG-~~g~lPW~-l~~Dm~~F~~iT~~~~~~~~~naVIMGRKTweS-ip~---~~rPL---~~R~nvVlSr~~ 75 (258)
.|++=.|.++ .+|..-|. -+++.++.-++-.. .++|+.|..|-.. -|. +.-+. ++-..||++++.
T Consensus 10 ~a~SlDGkia~~~g~s~~it~~~ar~~vh~lRa~------~daIlvG~~TV~~DnP~Ltvr~~~~~~~~~P~rVIlD~~~ 83 (218)
T COG1985 10 LAMSLDGKIATASGSSKWITGEEARADVHELRAE------SDAILVGSGTVLADNPSLTVRLPEGGEERNPVRVILDSRL 83 (218)
T ss_pred EEEcccCccccCCCCceeEeCHHHHHHHHHHHHH------cCEEEECccEEEeeCCccccccCCCCccCCCEEEEECCCC
Confidence 4455555555 45555587 46666655555554 3799999999853 221 22222 455678888875
Q ss_pred CCC-----CC-CC-CCcEEEeC------------------------CHHHHHHHHHhhccCCCCCcEEEEeChhhhcccc
Q psy1579 76 DLG-----SQ-LT-GPNVTTTS------------------------SLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTE 124 (258)
Q Consensus 76 ~~~-----~~-~~-~~~v~v~~------------------------sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~~~ 124 (258)
... .+ .. .+...+++ |+.++++.|.+. .+..|+|=||+.+..
T Consensus 84 rlp~~~~v~~~~~~~p~~v~~~~~~~~~~~~~~~g~~~i~~~~~~vdl~~~l~~L~~~----~i~~vlvEGG~~L~~--- 156 (218)
T COG1985 84 RLPLDSRVFRTGEGAPTIVVTTEPEEKLRELKEAGVEVILLPDGRVDLAALLEELAER----GINSVLVEGGATLNG--- 156 (218)
T ss_pred cCCchhhhhccCCCCcEEEEecCchhhhhHHHhCCCEEEEcCCCccCHHHHHHHHHhC----CCcEEEEccCHHHHH---
Confidence 542 01 11 13333333 467788888765 489999999999999
Q ss_pred cccccccCCcccccchhhhcccCCccchhhhhhhHhhhCCCcccEEEEEeecccccc--cccCC
Q psy1579 125 PLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDC--DTFFP 186 (258)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~l~~p~~D~i~lT~I~~~fe~--DtfFP 186 (258)
++|+..++|++.++.-|..+.+ -+++.
T Consensus 157 -----------------------------------s~l~~glVDel~l~iaP~i~G~~~~~~~~ 185 (218)
T COG1985 157 -----------------------------------SFLEAGLVDELLLYIAPKILGGSARTLVG 185 (218)
T ss_pred -----------------------------------HHHHcCCCcEEEEEEechhhcCCCCcccc
Confidence 9999999999999999988854 34444
No 17
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=94.69 E-value=1.1 Score=43.53 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=42.0
Q ss_pred CHHHHHHHHHhhccCCCCCcEEEEe------ChhhhcccccccccccCCcccccchhhhcccCCccchhhhhhhHhhhCC
Q psy1579 91 SLDQAIDLLRHKKSKGEIENVWVIG------GSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNS 164 (258)
Q Consensus 91 sl~~ai~~l~~~~~~~~~~~I~ViG------Ga~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~l~~ 164 (258)
+++++++.|.+. ...+|+|=| |+++.. ++|+.
T Consensus 292 dl~~iL~~L~~~----Gi~svLVEGG~~~~~G~~L~~--------------------------------------sfl~~ 329 (380)
T PLN02807 292 NLDSILDLCYQR----GLCSVLLDLRGNVGGLESLLK--------------------------------------DALED 329 (380)
T ss_pred CHHHHHHHHHHC----CCCEEEEecCCCCCCHHHHHH--------------------------------------HHHHC
Confidence 677788888654 689999999 788888 89999
Q ss_pred CcccEEEEEeecccccc
Q psy1579 165 PYCDKVYVTQIHHHFDC 181 (258)
Q Consensus 165 p~~D~i~lT~I~~~fe~ 181 (258)
.++|++++++.|..+.+
T Consensus 330 ~LvDei~~yiAP~ilG~ 346 (380)
T PLN02807 330 KLLQKVVVEVLPFWSGS 346 (380)
T ss_pred CCccEEEEEEcCceecC
Confidence 99999999999988854
No 18
>PRK00536 speE spermidine synthase; Provisional
Probab=41.38 E-value=16 Score=34.01 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=33.4
Q ss_pred CCCcEEEEeChhhhcccccccccccCCcccccchhhhcccCCccchhhhhhhHhhhCCCcccEEEEEeecccc--ccccc
Q psy1579 107 EIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHF--DCDTF 184 (258)
Q Consensus 107 ~~~~I~ViGGa~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~l~~p~~D~i~lT~I~~~f--e~Dtf 184 (258)
..++|.||||+.--. +.|.|+++ +++.+-.|+... -|-.|
T Consensus 72 ~pk~VLIiGGGDGg~------------------------------------~REvLkh~--~~v~mVeID~~Vv~~~k~~ 113 (262)
T PRK00536 72 ELKEVLIVDGFDLEL------------------------------------AHQLFKYD--THVDFVQADEKILDSFISF 113 (262)
T ss_pred CCCeEEEEcCCchHH------------------------------------HHHHHCcC--CeeEEEECCHHHHHHHHHH
Confidence 579999999987655 23899887 478777777544 47778
Q ss_pred CCCCC
Q psy1579 185 FPSLS 189 (258)
Q Consensus 185 FP~l~ 189 (258)
||.+.
T Consensus 114 lP~~~ 118 (262)
T PRK00536 114 FPHFH 118 (262)
T ss_pred CHHHH
Confidence 88654
No 19
>PHA03370 virion protein US2; Provisional
Probab=39.04 E-value=81 Score=30.08 Aligned_cols=87 Identities=14% Similarity=0.322 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHhhccCCCCCcEEEEeChhhhcccccccccccCCcccccchhhhcccCCccchhhhhhhHhhh-CCCccc
Q psy1579 90 SSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESL-NSPYCD 168 (258)
Q Consensus 90 ~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~l-~~p~~D 168 (258)
.|+.+-...|.+.......-+.||+|-|.|+. .++ +.|.--
T Consensus 112 ~sv~sGy~~LnSg~~gn~pyhLWVlGAADLC~--------------------------------------p~~e~ip~pk 153 (269)
T PHA03370 112 QDVLSGYLMLESEVSGNHSYSLWIVGAADICR--------------------------------------PAIEQIPLPK 153 (269)
T ss_pred hhHHHHHHHhccccccCcceeeEEechHHHHH--------------------------------------HHHHhCCCCc
Confidence 34555555665543333445799999999999 333 347788
Q ss_pred EEEEEeecccccc------cccCCCCC----CCcEEEecCCCCCCCcccCCccEEEEEEE
Q psy1579 169 KVYVTQIHHHFDC------DTFFPSLS----DKFQLIKDPNIPDDVQKENDLNFQFKVFQ 218 (258)
Q Consensus 169 ~i~lT~I~~~fe~------DtfFP~l~----~~f~li~~~~i~~~~~een~~~f~f~~y~ 218 (258)
+++..+++..+.| |.+-|.+. .+|....+.. ..+++|....|++--
T Consensus 154 Rli~~kv~~tW~G~~W~lPd~~~~~~ts~W~P~~~~~~~k~----~~~~~~~~c~y~~ig 209 (269)
T PHA03370 154 RLLAIKVPGTWSGMPWAIPDGIQTLLTSTWEPKFDTTEDKA----HFEDSGMKCVYKIIG 209 (269)
T ss_pred eEEEEEcCccccCCcccCCCCCCcceeccCCCCCCchhhhh----hhhcCCceEEeeecC
Confidence 8999999988765 44445443 3444443322 345678777766653
No 20
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=32.65 E-value=26 Score=22.70 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=9.9
Q ss_pred CCcEEEEeChhh
Q psy1579 108 IENVWVIGGSSI 119 (258)
Q Consensus 108 ~~~I~ViGGa~i 119 (258)
.+.|||+||..-
T Consensus 11 ~~~iyv~GG~~~ 22 (47)
T PF01344_consen 11 GNKIYVIGGYDG 22 (47)
T ss_dssp TTEEEEEEEBES
T ss_pred CCEEEEEeeecc
Confidence 478999999765
No 21
>PF02476 US2: US2 family; InterPro: IPR003485 This is a family of unique short (US) region proteins from Herpesviridae strains. The US2 family has no known function.
Probab=29.21 E-value=1.5e+02 Score=25.34 Aligned_cols=40 Identities=15% Similarity=0.455 Sum_probs=29.9
Q ss_pred CcEEEEeChhhhcccccccccccCCcccccchhhhcccCCccchhhhhhhHhhhC-CCcccEEEEEeeccccccccc-CC
Q psy1579 109 ENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLN-SPYCDKVYVTQIHHHFDCDTF-FP 186 (258)
Q Consensus 109 ~~I~ViGGa~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~l~-~p~~D~i~lT~I~~~fe~Dtf-FP 186 (258)
=++||+|-|.|++ .+|+ .+..-|++-.+|...+.|-.+ .|
T Consensus 12 yhLWVvGAADLC~--------------------------------------Pvl~~ip~pkRlv~~~v~~~w~g~sW~~P 53 (126)
T PF02476_consen 12 YHLWVVGAADLCR--------------------------------------PVLEHIPGPKRLVYAKVPGAWAGMSWALP 53 (126)
T ss_pred eeEEEechHHHHH--------------------------------------HHHHhCCCCceEEEEecCCccCCCccCCC
Confidence 4699999999999 3332 355559999999988866665 55
No 22
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=27.37 E-value=60 Score=31.39 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=19.3
Q ss_pred CHHHHHHHHHhhccCCCCCcEEEEeChhhhc
Q psy1579 91 SLDQAIDLLRHKKSKGEIENVWVIGGSSIYK 121 (258)
Q Consensus 91 sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~ 121 (258)
+++++++++++. +.+-|.-+||+++..
T Consensus 68 ~v~~~~~~~~~~----~~D~IIaiGGGSviD 94 (414)
T cd08190 68 SFKDAIAFAKKG----QFDAFVAVGGGSVID 94 (414)
T ss_pred HHHHHHHHHHhc----CCCEEEEeCCccHHH
Confidence 466777777664 356677799999887
No 23
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=27.32 E-value=62 Score=30.92 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=43.1
Q ss_pred eEEEeccccccccCCCCCCCCCcEEEEcCcCC--CCC------CCCCC--cEEEe---------CCHHHHHHHHHhhccC
Q psy1579 45 AVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSD--LGS------QLTGP--NVTTT---------SSLDQAIDLLRHKKSK 105 (258)
Q Consensus 45 aVIMGRKTweSip~~~rPL~~R~nvVlSr~~~--~~~------~~~~~--~v~v~---------~sl~~ai~~l~~~~~~ 105 (258)
-|+.|+...+.+++..+.+..+..+|+|...- .+. .+... .+.++ .+++++++.+++.
T Consensus 11 ~i~~G~g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~--- 87 (383)
T PRK09860 11 VNVIGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKEN--- 87 (383)
T ss_pred eEEECcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHc---
Confidence 47889999998887656665566667765421 110 01111 22333 2355677777654
Q ss_pred CCCCcEEEEeChhhhc
Q psy1579 106 GEIENVWVIGGSSIYK 121 (258)
Q Consensus 106 ~~~~~I~ViGGa~iy~ 121 (258)
+.+-|.-+||++...
T Consensus 88 -~~D~IiaiGGGS~iD 102 (383)
T PRK09860 88 -NCDSVISLGGGSPHD 102 (383)
T ss_pred -CCCEEEEeCCchHHH
Confidence 345556599988877
No 24
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=26.07 E-value=58 Score=30.84 Aligned_cols=73 Identities=15% Similarity=0.288 Sum_probs=39.2
Q ss_pred eEEEeccccccccCCCCCCCCCcEEEEcCcCCC--CC------CCC--CCcEEEeC---------CHHHHHHHHHhhccC
Q psy1579 45 AVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDL--GS------QLT--GPNVTTTS---------SLDQAIDLLRHKKSK 105 (258)
Q Consensus 45 aVIMGRKTweSip~~~rPL~~R~nvVlSr~~~~--~~------~~~--~~~v~v~~---------sl~~ai~~l~~~~~~ 105 (258)
-|+.|+..++.+++..+.+..++-+|++..... +. .+. +-.+.+.. .++++++.++..
T Consensus 8 ~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~--- 84 (377)
T cd08176 8 TNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKE--- 84 (377)
T ss_pred eEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhc---
Confidence 367788888887765444544555666543221 10 001 11233332 255666666653
Q ss_pred CCCCcEEEEeChhhhc
Q psy1579 106 GEIENVWVIGGSSIYK 121 (258)
Q Consensus 106 ~~~~~I~ViGGa~iy~ 121 (258)
+.+-|.-+||+++..
T Consensus 85 -~~D~IIavGGGS~iD 99 (377)
T cd08176 85 -GCDFIISIGGGSPHD 99 (377)
T ss_pred -CCCEEEEeCCcHHHH
Confidence 345566699998865
No 25
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=25.78 E-value=43 Score=31.18 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=19.3
Q ss_pred CHHHHHHHHHhhccCCCCCcEEEEeChhhhc
Q psy1579 91 SLDQAIDLLRHKKSKGEIENVWVIGGSSIYK 121 (258)
Q Consensus 91 sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~ 121 (258)
+++++.+.++.. +.+-|.-+||+++..
T Consensus 65 ~v~~~~~~~~~~----~~d~IIaiGGGs~iD 91 (337)
T cd08177 65 VTEAAVAAAREA----GADGIVAIGGGSTID 91 (337)
T ss_pred HHHHHHHHHHhc----CCCEEEEeCCcHHHH
Confidence 566777777653 356677799999877
No 26
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=25.22 E-value=99 Score=29.39 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=26.4
Q ss_pred CCCCCCCCcEEEEcCcCCCCCCCCCCcEEEeCCHHHHHHHHHhhccCCCCCcEEEEeCh
Q psy1579 59 KFRPLPGRYNVVLTRNSDLGSQLTGPNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGS 117 (258)
Q Consensus 59 ~~rPL~~R~nvVlSr~~~~~~~~~~~~v~v~~sl~~ai~~l~~~~~~~~~~~I~ViGGa 117 (258)
.++|.++|.. +...+... -....-...-.++..|++.+++. ..+.|+|+|+.
T Consensus 282 ~~~~~~gR~e-~~~~~~~~--vidDsya~np~s~~~al~~l~~~----~~r~i~VlG~~ 333 (417)
T TIGR01143 282 ELKLVKGRFE-IQTKNGLT--LIDDTYNANPDSMRAALDALARF----PGKKILVLGDM 333 (417)
T ss_pred hCCCCCCcee-EEcCCCcE--EEEcCCCCCHHHHHHHHHHHHhC----CCCEEEEEcCc
Confidence 3678999988 44322110 00000001123566677777643 13678888874
No 27
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=23.82 E-value=77 Score=30.80 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=27.6
Q ss_pred CcEEEeCCHHHHHHHHHhhccCCCCCcEEEEeChhhhcccccc
Q psy1579 84 PNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPL 126 (258)
Q Consensus 84 ~~v~v~~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~~~~~ 126 (258)
.-++|++|++||+.+. .+|.|..++.+.+...|-
T Consensus 188 TivfVTHDidEA~kLa---------dri~vm~~G~i~Q~~~P~ 221 (309)
T COG1125 188 TIVFVTHDIDEALKLA---------DRIAVMDAGEIVQYDTPD 221 (309)
T ss_pred EEEEEecCHHHHHhhh---------ceEEEecCCeEEEeCCHH
Confidence 4578999999999976 468898888998866665
No 28
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=23.80 E-value=73 Score=27.45 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=10.7
Q ss_pred CCCcEEEEeChhhhc
Q psy1579 107 EIENVWVIGGSSIYK 121 (258)
Q Consensus 107 ~~~~I~ViGGa~iy~ 121 (258)
..+-+|||||+.-..
T Consensus 97 ~~~i~F~IGGa~G~~ 111 (157)
T PRK00103 97 RSDVAFVIGGADGLS 111 (157)
T ss_pred CccEEEEEcCccccC
Confidence 346799999975443
No 29
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=23.47 E-value=97 Score=27.67 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=28.7
Q ss_pred CCcEEEEcCcCCCCCCCCCCcEEE--eCCHHHHHHHHHhhccCCCCCcEEEEeChhhhc
Q psy1579 65 GRYNVVLTRNSDLGSQLTGPNVTT--TSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYK 121 (258)
Q Consensus 65 ~R~nvVlSr~~~~~~~~~~~~v~v--~~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~ 121 (258)
+-.-+|+|+++.... ...++.. ..++.+.++.+++ -++.|+||++++.
T Consensus 28 ~~~~~v~s~~p~~~~--~~~~v~~~~r~~~~~~~~~l~~-------~D~vI~gGG~l~~ 77 (298)
T TIGR03609 28 GVEPTVLSNDPAETA--KLYGVEAVNRRSLLAVLRALRR-------ADVVIWGGGSLLQ 77 (298)
T ss_pred CCeEEEecCChHHHH--hhcCceEEccCCHHHHHHHHHH-------CCEEEECCccccc
Confidence 445677777764311 1123332 2467677777764 3688899998886
No 30
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=22.39 E-value=88 Score=29.58 Aligned_cols=27 Identities=19% Similarity=0.530 Sum_probs=18.8
Q ss_pred CHHHHHHHHHhhccCCCCCcEEEEeChhhhc
Q psy1579 91 SLDQAIDLLRHKKSKGEIENVWVIGGSSIYK 121 (258)
Q Consensus 91 sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~ 121 (258)
+++++++.+++. +.+-|.-+||+++..
T Consensus 71 ~v~~~~~~~~~~----~~d~IIaiGGGS~~D 97 (374)
T cd08189 71 NVEAGLALYREN----GCDAILAVGGGSVID 97 (374)
T ss_pred HHHHHHHHHHhc----CCCEEEEeCCccHHH
Confidence 366777777764 345566699999887
No 31
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=22.25 E-value=95 Score=26.38 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=22.1
Q ss_pred EEEeCCHHHHHHHHHhhccCCCCCcEEEEeChhhhc
Q psy1579 86 VTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYK 121 (258)
Q Consensus 86 v~v~~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~ 121 (258)
.+.-.|++||+++++.. .+-.+|.||..+..
T Consensus 5 ~~~P~sl~ea~~ll~~~-----~~a~~vaGgT~l~~ 35 (171)
T PF00941_consen 5 YFRPKSLEEALELLAKG-----PDARIVAGGTDLGV 35 (171)
T ss_dssp EEE-SSHHHHHHHHHHG-----TTEEEESS-TTHHH
T ss_pred EEccCCHHHHHHHHhcC-----CCCEEEeCCCccch
Confidence 34557999999999942 46788888887765
No 32
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=21.97 E-value=45 Score=31.45 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=40.1
Q ss_pred eEEEeccccccccCCCCCCCCCcEEEEcCcCC--CCC------CCC--CCcEEEe---------CCHHHHHHHHHhhccC
Q psy1579 45 AVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSD--LGS------QLT--GPNVTTT---------SSLDQAIDLLRHKKSK 105 (258)
Q Consensus 45 aVIMGRKTweSip~~~rPL~~R~nvVlSr~~~--~~~------~~~--~~~v~v~---------~sl~~ai~~l~~~~~~ 105 (258)
-|+.|+..++.+++..+.+..+..+|+|.... .+. .+. +..+.++ .+++++++.+++.
T Consensus 6 ~i~~G~g~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~--- 82 (376)
T cd08193 6 RIVFGAGSLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAA--- 82 (376)
T ss_pred eEEECcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhc---
Confidence 36777777777776444454455556654431 110 000 1122222 2355666666653
Q ss_pred CCCCcEEEEeChhhhc
Q psy1579 106 GEIENVWVIGGSSIYK 121 (258)
Q Consensus 106 ~~~~~I~ViGGa~iy~ 121 (258)
+.+-|.-+||+++..
T Consensus 83 -~~D~IIaiGGGs~iD 97 (376)
T cd08193 83 -GADGVIGFGGGSSMD 97 (376)
T ss_pred -CCCEEEEeCCchHHH
Confidence 356677799999887
No 33
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.80 E-value=55 Score=31.06 Aligned_cols=72 Identities=17% Similarity=0.241 Sum_probs=40.4
Q ss_pred EEEeccccccccCCCCCCCCCcEEEEcCcCCC--CC------CCC--CCcEEEe---------CCHHHHHHHHHhhccCC
Q psy1579 46 VIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDL--GS------QLT--GPNVTTT---------SSLDQAIDLLRHKKSKG 106 (258)
Q Consensus 46 VIMGRKTweSip~~~rPL~~R~nvVlSr~~~~--~~------~~~--~~~v~v~---------~sl~~ai~~l~~~~~~~ 106 (258)
|+.|+..++.+++..+.+..++.+|++..... +. .+. +..+.++ .++++++++++..
T Consensus 9 i~~G~g~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~---- 84 (377)
T cd08188 9 IIFGRGALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLEN---- 84 (377)
T ss_pred eEECcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhc----
Confidence 77888888888765445544555666653221 10 000 1122222 2355666666653
Q ss_pred CCCcEEEEeChhhhc
Q psy1579 107 EIENVWVIGGSSIYK 121 (258)
Q Consensus 107 ~~~~I~ViGGa~iy~ 121 (258)
..+-|.-+||++...
T Consensus 85 ~~d~IIaiGGGsviD 99 (377)
T cd08188 85 GCDVIIAVGGGSPID 99 (377)
T ss_pred CCCEEEEeCCchHHH
Confidence 355677799998887
No 34
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=21.59 E-value=97 Score=29.32 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=19.2
Q ss_pred CHHHHHHHHHhhccCCCCCcEEEEeChhhhc
Q psy1579 91 SLDQAIDLLRHKKSKGEIENVWVIGGSSIYK 121 (258)
Q Consensus 91 sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~ 121 (258)
+++++++.++.. ..+-|.-+||+++..
T Consensus 68 ~v~~~~~~~~~~----~~D~IIaiGGGS~~D 94 (375)
T cd08194 68 SVEEGVKLAKEG----GCDVIIALGGGSPID 94 (375)
T ss_pred HHHHHHHHHHhc----CCCEEEEeCCchHHH
Confidence 366777777664 355666699998887
No 35
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=20.72 E-value=1.1e+02 Score=24.41 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=20.2
Q ss_pred CHHHHHHHHHhhccCCCCCcEEEEeChhhhc
Q psy1579 91 SLDQAIDLLRHKKSKGEIENVWVIGGSSIYK 121 (258)
Q Consensus 91 sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~ 121 (258)
++.+.|+..+.+..-...++|.|||+++-|-
T Consensus 22 ~V~~qI~yvk~~~~~~GpK~VLViGaStGyG 52 (78)
T PF12242_consen 22 NVENQIEYVKSQGKINGPKKVLVIGASTGYG 52 (78)
T ss_dssp HHHHHHHHHHHC---TS-SEEEEES-SSHHH
T ss_pred HHHHHHHHHHhcCCCCCCceEEEEecCCccc
Confidence 4666777777644334458999999999998
No 36
>PF13964 Kelch_6: Kelch motif
Probab=20.67 E-value=60 Score=21.54 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=9.8
Q ss_pred CCcEEEEeChhh
Q psy1579 108 IENVWVIGGSSI 119 (258)
Q Consensus 108 ~~~I~ViGGa~i 119 (258)
.++|||+||..-
T Consensus 11 ~~~iyv~GG~~~ 22 (50)
T PF13964_consen 11 GGKIYVFGGYDN 22 (50)
T ss_pred CCEEEEECCCCC
Confidence 468999999765
No 37
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=20.61 E-value=2.7e+02 Score=23.02 Aligned_cols=73 Identities=27% Similarity=0.413 Sum_probs=42.0
Q ss_pred CCcEEEeCCHHHHHHHHHhhccCCCCCcEEEEeChhhhcccccccccccCCcccccchhhhcccCCccchhhhhhhHhhh
Q psy1579 83 GPNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESL 162 (258)
Q Consensus 83 ~~~v~v~~sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~l 162 (258)
+.++.+..|+.+|++.|+ .+.|++++-...=. .+. -+-+.+|-+++........|+=.-|
T Consensus 19 gk~livlpdl~DAiEvl~-------p~~V~~i~~~~~~~--~~~-----~~~~~~~rvllVf~G~d~gfsk~El------ 78 (106)
T PF09895_consen 19 GKSLIVLPDLKDAIEVLK-------PDVVYLISRSGEEE--EKL-----EFLKIEGRVLLVFSGSDPGFSKIEL------ 78 (106)
T ss_pred CCcEEEeCCHHHHHHhcC-------CcEEEEEcCccccc--ccc-----cccCcCCcEEEEEeCCCCCCChhHh------
Confidence 346888999999999996 36788876543322 110 1123555566656665555544433
Q ss_pred CCCcccEEEEEeecc
Q psy1579 163 NSPYCDKVYVTQIHH 177 (258)
Q Consensus 163 ~~p~~D~i~lT~I~~ 177 (258)
+.-+.+++.-+..
T Consensus 79 --~~g~~v~~~~v~~ 91 (106)
T PF09895_consen 79 --ELGEAVYIRGVER 91 (106)
T ss_pred --cCCceEEeeccCc
Confidence 2344555555443
No 38
>smart00612 Kelch Kelch domain.
Probab=20.19 E-value=61 Score=20.09 Aligned_cols=8 Identities=38% Similarity=1.036 Sum_probs=6.4
Q ss_pred cEEEEeCh
Q psy1579 110 NVWVIGGS 117 (258)
Q Consensus 110 ~I~ViGGa 117 (258)
+|||+||.
T Consensus 1 ~iyv~GG~ 8 (47)
T smart00612 1 KIYVVGGF 8 (47)
T ss_pred CEEEEeCC
Confidence 48999995
No 39
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=20.18 E-value=72 Score=30.31 Aligned_cols=73 Identities=14% Similarity=0.277 Sum_probs=38.8
Q ss_pred eEEEeccccccccCCCCCCCCCcEEEEcCcCCC--CC------CCC--CCcEEEe---------CCHHHHHHHHHhhccC
Q psy1579 45 AVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDL--GS------QLT--GPNVTTT---------SSLDQAIDLLRHKKSK 105 (258)
Q Consensus 45 aVIMGRKTweSip~~~rPL~~R~nvVlSr~~~~--~~------~~~--~~~v~v~---------~sl~~ai~~l~~~~~~ 105 (258)
-|++|+-.++.+++..+.+..+.-+|++..... +. .+. +-.+.++ .+++++++.+++.
T Consensus 10 ~i~~G~g~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--- 86 (382)
T PRK10624 10 TAYFGRGAIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKAS--- 86 (382)
T ss_pred eEEECcCHHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhc---
Confidence 466687777777764444544555555543211 00 000 1122222 3355666777664
Q ss_pred CCCCcEEEEeChhhhc
Q psy1579 106 GEIENVWVIGGSSIYK 121 (258)
Q Consensus 106 ~~~~~I~ViGGa~iy~ 121 (258)
+.+-|.-+||+++..
T Consensus 87 -~~D~IIaiGGGS~iD 101 (382)
T PRK10624 87 -GADYLIAIGGGSPQD 101 (382)
T ss_pred -CCCEEEEeCChHHHH
Confidence 344555599999887
No 40
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=20.11 E-value=1e+02 Score=28.88 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=18.7
Q ss_pred CHHHHHHHHHhhccCCCCCcEEEEeChhhhc
Q psy1579 91 SLDQAIDLLRHKKSKGEIENVWVIGGSSIYK 121 (258)
Q Consensus 91 sl~~ai~~l~~~~~~~~~~~I~ViGGa~iy~ 121 (258)
+++++++.++.. ..+-|.-+||+++..
T Consensus 68 ~v~~~~~~~~~~----~~d~IiaiGGGs~~D 94 (370)
T cd08551 68 NVDAAVAAYREE----GCDGVIAVGGGSVLD 94 (370)
T ss_pred HHHHHHHHHHhc----CCCEEEEeCCchHHH
Confidence 466777777654 245566699998877
Done!