RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1579
(258 letters)
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs,
lipophilic antifolates; HET: LII NDP; 1.05A {Homo
sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A*
1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A*
1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A*
3ghw_A* 3ntz_A* 3nu0_A* ...
Length = 186
Score = 190 bits (484), Expect = 4e-61
Identities = 63/198 (31%), Positives = 100/198 (50%), Gaps = 43/198 (21%)
Query: 24 RKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTG 83
R + +F R+T + + N VIMG+KTW SIPEK RPL GR N+VL+R G
Sbjct: 28 RNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKE--PPQG 85
Query: 84 PNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLC 143
+ SLD A+ L + +++ VW++GGSS+YK
Sbjct: 86 -AHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYK---------------------- 122
Query: 144 TRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLI-KDPNIP 201
E++N P K++VT+I F+ DTFFP + +K++L+ + P +
Sbjct: 123 ----------------EAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVL 166
Query: 202 DDVQKENDLNFQFKVFQK 219
DVQ+E + ++F+V++K
Sbjct: 167 SDVQEEKGIKYKFEVYEK 184
>3nzb_X Dihydrofolate reductase; pneumocystius carinii DHFR inhibitor
complexes, oxidoreducta oxidoreductase-oxidoreductase
inhibitor complex; HET: D2N NAP; 1.45A {Pneumocystis
carinii} PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A*
1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 3nz6_X*
3nz9_X* 3nza_X* 2fzi_A* 3nzc_X* 3td8_A* 4cd2_A* 1vj3_A*
Length = 206
Score = 180 bits (458), Expect = 4e-57
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 61/218 (27%)
Query: 24 RKDMAHFSRITK---KTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQ 80
+K++++F R+T ++ +N V+MGRKTW+SIP +FRPL GR NVV+TRN L
Sbjct: 30 KKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLD-- 87
Query: 81 LTGPNVTTTSSLDQAIDLLRH---KKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKK 137
G + + SLD A++LL +S +I ++VIGG+ +YK
Sbjct: 88 -LGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYK---------------- 130
Query: 138 GLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLSDK------ 191
+++ P D++ T I+ CD FFP
Sbjct: 131 ----------------------AAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSV 168
Query: 192 --------FQLIKDPNIPDDVQKENDLNFQFKVFQKEL 221
+ +P E+ +++F+++ ++L
Sbjct: 169 WKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL 206
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target;
HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1
PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A*
1m79_A* 1m7a_A* 3qlr_A* 3qls_A* 3qlw_A*
Length = 192
Score = 178 bits (454), Expect = 1e-56
Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 58/209 (27%)
Query: 24 RKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTG 83
RK++ +F +T +T N NAVIMGRKTW+SIP+KFRPLP R N++L+R+ + +++
Sbjct: 30 RKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYE--NEIID 87
Query: 84 PNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLC 143
N+ SS++ +++L+ ++E V++IGG+ IY
Sbjct: 88 DNIIHASSIESSLNLV------SDVERVFIIGGAEIYN---------------------- 119
Query: 144 TRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHH----HFDCDTFFPSLSDKFQLIK--- 196
E +N+ + +T+I H + DTF + +
Sbjct: 120 ----------------ELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSE 163
Query: 197 -----DPNIPDDVQKENDLNFQFKVFQKE 220
+ +D KE D + + ++ ++
Sbjct: 164 LQKFVGDTVLEDDIKEGDFTYNYTLWTRK 192
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase;
HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A*
3eek_A* 3eel_A* 3eem_A* 3qlx_A* 3qly_A* 3qlz_A*
Length = 227
Score = 168 bits (426), Expect = 5e-52
Identities = 51/229 (22%), Positives = 90/229 (39%), Gaps = 71/229 (31%)
Query: 24 RKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTG 83
K+M +F +T T ++++ N VIMGRKTW+SIP+KFRPLP R NVV++R+ D +
Sbjct: 30 AKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRPLPKRINVVVSRSFDGELRKVE 89
Query: 84 PNVTTTSSLDQAIDLLR-HKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILL 142
+ ++SL + L+ ++ +IE +++IGG IY+
Sbjct: 90 DGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYR--------------------- 128
Query: 143 CTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFD-----CDTFFPSLSDKFQLIKD 197
+S+ D +T+I + DTF + + +
Sbjct: 129 -----------------QSM--DLADHWLITKIMPLPETTIPQMDTFLQKQELEQRFYDN 169
Query: 198 PN-------------------------IPDDVQKENDLNFQFKVFQKEL 221
+ + +E F F ++ K+L
Sbjct: 170 SDKLVDFLPSSIQLEGRLTSQEWNGELVKGLPVQEKGYQFYFTLYTKKL 218
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase;
oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A
{Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A*
1j3j_A* 1j3i_A* 3dga_A*
Length = 280
Score = 168 bits (426), Expect = 2e-51
Identities = 52/243 (21%), Positives = 86/243 (35%), Gaps = 77/243 (31%)
Query: 24 RKDMAHFSRITKKTENSNRV----------------------------NAVIMGRKTWDS 55
DM +F +T S N V+MGR W+S
Sbjct: 52 SLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVMGRTNWES 111
Query: 56 IPEKFRPLPGRYNVVLTRNSDLGSQLTGPNVTTTSSLDQAIDLLRHKKSKGEIENVWVIG 115
IP+KF+PL R NV+L+R + +V + ++ I LL K +++G
Sbjct: 112 IPKKFKPLSNRINVILSRTLKK--EDFDEDVYIINKVEDLIVLL----GKLNYYKCFILG 165
Query: 116 GSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQI 175
GS +Y+ E L K+Y T+I
Sbjct: 166 GSVVYQ--------------------------------------EFLEKKLIKKIYFTRI 187
Query: 176 HHHFDCDTFFPSL-SDKFQLIKDPNIPDDVQKENDLNFQFKVFQKELAPKPHSLNVWNHK 234
+ ++CD FFP + +++Q+I DV N+ F +++K + N +
Sbjct: 188 NSTYECDVFFPEINENEYQIISV----SDVYTSNNTTLDFIIYKKTNNKMLNEQNCIKGE 243
Query: 235 NYN 237
N
Sbjct: 244 EKN 246
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax,
pyrimethamine, malaria, drug resistance, oxidoreductase;
HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A*
2blc_A* 2bla_A*
Length = 238
Score = 164 bits (416), Expect = 2e-50
Identities = 48/235 (20%), Positives = 81/235 (34%), Gaps = 87/235 (37%)
Query: 24 RKDMAHFSRITKKTENSNRV--------------------------------------NA 45
DM +FS +T + S N
Sbjct: 51 SVDMKYFSSVTTYVDESKYEKLKWKRERYLRMEASQGGGDNTSGGDNTHGGDNADKLQNV 110
Query: 46 VIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTGPNVTTTSSLDQAIDLLRHKKSK 105
V+MGR +W+SIP++++PLP R NVVL++ + V S+D + LL+ K
Sbjct: 111 VVMGRSSWESIPKQYKPLPNRINVVLSKTLTK--EDVKEKVFIIDSIDDLLLLLK----K 164
Query: 106 GEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNSP 165
+ ++IGG+ +Y+ E L+
Sbjct: 165 LKYYKCFIIGGAQVYR--------------------------------------ECLSRN 186
Query: 166 YCDKVYVTQIHHHFDCDTFFPSL-SDKFQLIKDPNIPDDVQKENDLNFQFKVFQK 219
++Y T+I+ + CD FFP +F++ +V F V+ K
Sbjct: 187 LIKQIYFTRINGAYPCDVFFPEFDESEFRVTS----VSEVYNSKGTTLDFLVYSK 237
>3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB:
3qfx_A*
Length = 240
Score = 162 bits (412), Expect = 8e-50
Identities = 52/223 (23%), Positives = 79/223 (35%), Gaps = 61/223 (27%)
Query: 24 RKDMAHFSRITKKTENS------NRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDL 77
+DM +F R+T ++ NAV+MGRKTWDS+P KFRPL R NVVL+R++
Sbjct: 52 PEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKTWDSLPPKFRPLSNRLNVVLSRSATK 111
Query: 78 GSQLTGP------------NVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEP 125
L G V L+ A+ +L K+ IE V+ IGG +IYK
Sbjct: 112 EQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLVSKEHTSSIETVFCIGGGTIYKQALC 171
Query: 126 LMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHH-HFDCDTF 184
++ T + C F
Sbjct: 172 APCVN-----------------------------------VLQAIHRTVVRPASNSCSVF 196
Query: 185 FP------SLSDKFQLIKDPNIPDDVQK-ENDLNFQFKVFQKE 220
F + +L+++ + V +QF+
Sbjct: 197 FDIPAAGTKTPEGLELVRESITDERVSTGAGGKKYQFEKLVPR 239
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A
{Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Length = 515
Score = 151 bits (384), Expect = 5e-43
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 56/203 (27%)
Query: 24 RKDMAHFSRIT------KKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDL 77
D T ++N + N VI GRKT++SIP+ PL R NV+L+R
Sbjct: 39 THDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPKASLPLKNRINVILSRTVK- 97
Query: 78 GSQLTGPNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKK 137
P L AI L ++ ++++GGS +YK
Sbjct: 98 ----EVPGCLVYEDLSTAIRDL---RANVPHNKIFILGGSFLYK---------------- 134
Query: 138 GLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLSDKFQLIKD 197
E L++ CDK+Y+T+++ + DT+FP + D F++
Sbjct: 135 ----------------------EVLDNGLCDKIYLTRLNKEYPGDTYFPDIPDTFEITAI 172
Query: 198 PNIPDDVQKENDLNFQFKVFQKE 220
+ +++ F +++++
Sbjct: 173 ----SPTFSTDFVSYDFVIYERK 191
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover,
non-active site, oxidoreductase; HET: UMP CB3 MTX NDP;
2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A*
3dl5_A* 3dl6_A* 2oip_A*
Length = 521
Score = 149 bits (378), Expect = 4e-42
Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 50/197 (25%)
Query: 24 RKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTG 83
+D+ FS+IT +SN+ NA+IMGRKTWDSI RPL R VV++ + L
Sbjct: 30 SEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRPLKNRIIVVISSS--LPQDEAD 85
Query: 84 PNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLC 143
PNV +L+ +I+ L + S IEN++V GG SIY+
Sbjct: 86 PNVVVFRNLEDSIENLMNDDS---IENIFVCGGESIYR---------------------- 120
Query: 144 TRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHH-HFDCDTFFPSLSDKFQLIKDPNIPD 202
++L + D++Y+T++ + DT+FP + + F +
Sbjct: 121 ----------------DALKDNFVDRIYLTRVALEDIEFDTYFPEIPETFLPVYM----S 160
Query: 203 DVQKENDLNFQFKVFQK 219
++++ F +F+K
Sbjct: 161 QTFCTKNISYDFMIFEK 177
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A
{Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A*
1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A
2lf1_A*
Length = 162
Score = 138 bits (351), Expect = 2e-41
Identities = 36/195 (18%), Positives = 63/195 (32%), Gaps = 61/195 (31%)
Query: 26 DMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTGPN 85
D+ +F T +++GR+T++S P+ RPLP R NVVLT D
Sbjct: 26 DLHYFRAQTVG-------KIMVVGRRTYESFPK--RPLPERTNVVLTHQED----YQAQG 72
Query: 86 VTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTR 145
+ + + + + GG+ I+ +
Sbjct: 73 AVVVHDVAAVFAYAKQHLD----QELVIAGGAQIFTAFK--------------------- 107
Query: 146 KSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKDPNIPDDV 204
D + VT++ F+ DT L+ D F + + D
Sbjct: 108 -------------------DDVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRTVEDT- 147
Query: 205 QKENDLNFQFKVFQK 219
L ++V+QK
Sbjct: 148 --NPALTHTYEVWQK 160
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon
metabolism, lipophilic antifolates, NADP,
oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium
avium} PDB: 2w3v_A*
Length = 167
Score = 136 bits (345), Expect = 2e-40
Identities = 47/199 (23%), Positives = 70/199 (35%), Gaps = 66/199 (33%)
Query: 26 DMAHFSRITK-KTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTGP 84
D+ F +T T VIMGR+TW+S+P K RPLPGR NVV++R D
Sbjct: 31 DLTRFKEVTMGHT--------VIMGRRTWESLPAKVRPLPGRRNVVVSRRPD----FVAE 78
Query: 85 NVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCT 144
SL+ A+ WVIGG+ IY L
Sbjct: 79 GARVAGSLEAALAYAG------SDPAPWVIGGAQIYLLAL-------------------- 112
Query: 145 RKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHF---DCDTFFPSLSDKFQLIKDPNIP 201
P+ + VT+I D D P+L D + +
Sbjct: 113 --------------------PHATRCEVTEIEIDLRRDDDDALAPALDDSWVGETGEWLA 152
Query: 202 DDVQKENDLNFQFKVFQKE 220
+ L ++F ++++
Sbjct: 153 SR----SGLRYRFHSYRRD 167
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design,
folateanalogs, rossmann fold; HET: NDP MTX; 1.70A
{Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A*
1dg7_A* 1dg8_A* 2cig_A*
Length = 159
Score = 133 bits (336), Expect = 2e-39
Identities = 45/197 (22%), Positives = 67/197 (34%), Gaps = 68/197 (34%)
Query: 26 DMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTGPN 85
D AHF IT + ++MGR+TWDS+P K RPLPGR NVVL+R +D
Sbjct: 27 DQAHFREITMG-------HTIVMGRRTWDSLPAKVRPLPGRRNVVLSRQAD----FMASG 75
Query: 86 VTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTR 145
SL++A+ WVIGG +Y L
Sbjct: 76 AEVVGSLEEALTS----------PETWVIGGGQVYALAL--------------------- 104
Query: 146 KSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDC---DTFFPSLSDKFQLIKDPNIPD 202
PY + VT++ D P L + ++
Sbjct: 105 -------------------PYATRCEVTEVDIGLPREAGDALAPVLDETWRGETGEWRFS 145
Query: 203 DVQKENDLNFQFKVFQK 219
+ L ++ + +
Sbjct: 146 R----SGLRYRLYSYHR 158
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A
{Geobacillus stearothermophilus}
Length = 164
Score = 133 bits (336), Expect = 3e-39
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 62/195 (31%)
Query: 26 DMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTGPN 85
D+A+F R+T +A++MGRKT+++I RPLPGR NVV+T N
Sbjct: 27 DLAYFKRVTMG-------HAIVMGRKTFEAIG---RPLPGRDNVVVTGNRS----FRPEG 72
Query: 86 VTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTR 145
SL++ + + V++IGG+ +++ T
Sbjct: 73 CLVLHSLEEVKQWI-----ASRADEVFIIGGAELFRATM--------------------- 106
Query: 146 KSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKDPNIPDDV 204
P D++YVT+I F DTF+P +S D+++++ D
Sbjct: 107 -------------------PIVDRLYVTKIFASFPGDTFYPPISDDEWEIVSYTPGGKD- 146
Query: 205 QKENDLNFQFKVFQK 219
++N F ++++
Sbjct: 147 -EKNPYEHAFIIYER 160
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET:
NDP MTX; 1.70A {Moritella profunda} PDB: 3ia5_A 2zza_A*
Length = 162
Score = 129 bits (328), Expect = 5e-38
Identities = 45/195 (23%), Positives = 78/195 (40%), Gaps = 63/195 (32%)
Query: 26 DMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTGPN 85
++ F R T ++MGR T++SI RPLPGR N+VL+R +D
Sbjct: 28 ELQLFKRATLG-------KPIVMGRNTFESIG---RPLPGRLNIVLSRQTD----YQPEG 73
Query: 86 VTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTR 145
VT ++L+ A+ G++E + +IGG++IY
Sbjct: 74 VTVVATLEDAVVAA------GDVEELMIIGGATIYNQCL--------------------- 106
Query: 146 KSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKDPNIPDDV 204
D++Y+T I + DT+FP +Q I+ + D
Sbjct: 107 -------------------AAADRLYLTHIELTTEGDTWFPDYEQYNWQEIEHESYAAD- 146
Query: 205 QKENDLNFQFKVFQK 219
+N N++F + ++
Sbjct: 147 -DKNPHNYRFSLLER 160
>3s9u_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5DR; 1.90A
{Bacillus anthracis} PDB: 3sa1_A* 3sa2_A* 3sai_A*
3e0b_A* 3jvx_A* 3jwm_A* 3jwk_A* 3jw5_A* 3jwf_A* 3jwc_A*
3jw3_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Length = 165
Score = 129 bits (328), Expect = 6e-38
Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 63/195 (32%)
Query: 26 DMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTGPN 85
++ + + T + +IMGRK +++I RPLPGR N+++TRN
Sbjct: 31 ELQYVKKTTMG-------HPLIMGRKNYEAIG---RPLPGRRNIIVTRNEG----YHVEG 76
Query: 86 VTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTR 145
S+++ +L +++ E +++ GG+ IY L
Sbjct: 77 CEVAHSVEEVFELCKNE------EEIFIFGGAQIYDLFL--------------------- 109
Query: 146 KSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKDPNIPDDV 204
PY DK+Y+T+IHH F+ DTFFP + ++ + D
Sbjct: 110 -------------------PYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTD- 149
Query: 205 QKENDLNFQFKVFQK 219
++N + + V++K
Sbjct: 150 -EKNPYTYYYHVYEK 163
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold,
adenine nucleotide BIN domain, antibiotic resistance,
methotrexate resistance; HET: MTX NAP; 1.50A
{Escherichia coli} PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A*
1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A*
1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A*
1rd7_A* 1re7_A* ...
Length = 159
Score = 129 bits (326), Expect = 1e-37
Identities = 47/195 (24%), Positives = 72/195 (36%), Gaps = 64/195 (32%)
Query: 26 DMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTGPN 85
D+A F R T VIMGR TW+SI RPLPGR N++L+
Sbjct: 27 DLAWFKRNTLN-------KPVIMGRHTWESIG---RPLPGRKNIILSSQPGT-----DDR 71
Query: 86 VTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTR 145
VT S+D+AI G++ + VIGG +Y+
Sbjct: 72 VTWVKSVDEAIAAC------GDVPEIMVIGGGRVYEQFL--------------------- 104
Query: 146 KSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKDPNIPDDV 204
P K+Y+T I + DT FP D ++ + D
Sbjct: 105 -------------------PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDAD- 144
Query: 205 QKENDLNFQFKVFQK 219
+N ++ F++ ++
Sbjct: 145 -AQNSHSYCFEILER 158
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib
complex; HET: NDP TOP; 1.90A {Coxiella burnetii} PDB:
3tq9_A* 3tqa_A* 3tqb_A*
Length = 178
Score = 128 bits (325), Expect = 2e-37
Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 63/195 (32%)
Query: 26 DMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTGPN 85
D+AHF IT ++MGR+T+DSI +PLP R N+V+T+ + L
Sbjct: 28 DLAHFKSITLG-------KPIVMGRRTFDSIG---KPLPHRRNIVITQQKN----LIIEG 73
Query: 86 VTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTR 145
SLD A+ L + V +IGG+ I+K
Sbjct: 74 CDIFYSLDDALSAL------TKEPEVIIIGGARIFKEAL--------------------- 106
Query: 146 KSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKDPNIPDDV 204
P DK+ +T I+H F+ D +FP + ++++ D
Sbjct: 107 -------------------PKADKMILTIINHSFEGDVYFPEWNDKEWKITSQIKHERD- 146
Query: 205 QKENDLNFQFKVFQK 219
++N FQF ++
Sbjct: 147 -EKNPYPFQFLELRR 160
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine,
antifolate resistance, oxidoreductase, transferase; HET:
CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A*
3qgt_A*
Length = 608
Score = 137 bits (347), Expect = 2e-37
Identities = 51/224 (22%), Positives = 83/224 (37%), Gaps = 77/224 (34%)
Query: 25 KDMAHFSRITKKTENS----------------------------NRVNAVIMGRKTWDSI 56
DM +F +T S N V+MGR W+SI
Sbjct: 53 LDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVMGRTNWESI 112
Query: 57 PEKFRPLPGRYNVVLTRNSDLGSQLTGPNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGG 116
P+KF+PL R NV+L+R L + +V + ++ I LL K +++GG
Sbjct: 113 PKKFKPLSNRINVILSRT--LKKEDFDEDVYIINKVEDLIVLL----GKLNYYKCFILGG 166
Query: 117 SSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIH 176
S +Y+ E L K+Y T+I+
Sbjct: 167 SVVYQ--------------------------------------EFLEKKLIKKIYFTRIN 188
Query: 177 HHFDCDTFFPSLSDK-FQLIKDPNIPDDVQKENDLNFQFKVFQK 219
++CD FFP +++ +Q+I DV N+ F +++K
Sbjct: 189 STYECDVFFPEINENEYQIISVS----DVYTSNNTTLDFIIYKK 228
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha
helices, oxidoreductase; HET: NDP MTX; 1.95A
{Streptococcus pneumoniae}
Length = 190
Score = 128 bits (324), Expect = 4e-37
Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 62/197 (31%)
Query: 25 KDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTGP 84
++ HF T +A++MGR T+D + R LP R ++LTRN +
Sbjct: 49 AELQHFKETTLN-------HAILMGRVTFDGMGR--RLLPKRETLILTRNPE----EKID 95
Query: 85 NVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCT 144
V T + +D + +N++++GG I++ E
Sbjct: 96 GVATFHDVQSVLDWY-----SAQEKNLYIVGGKQIFQAFE-------------------- 130
Query: 145 RKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLSD--KFQLIKDPNIPD 202
PY D+V VT IH + DT+FP+ D F+ +
Sbjct: 131 --------------------PYLDEVIVTHIHARVEGDTYFPAEFDLSLFETVSSKFYTK 170
Query: 203 DVQKENDLNFQFKVFQK 219
D ++N +F + ++
Sbjct: 171 D--EKNPYDFTIQYRKR 185
>2w9h_A DHFR, dihydrofolate reductase; oxidoreductase, one-carbon
metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB:
2w9g_A* 3sqy_X* 3srq_X* 3srr_X* 3srs_X* 3sru_X* 3srw_X*
3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3sr5_X* 3frb_X*
3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* ...
Length = 159
Score = 125 bits (317), Expect = 2e-36
Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 66/195 (33%)
Query: 26 DMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTGPN 85
D+ H +++ + ++MGRKT++SI +PLP R NVVLT ++
Sbjct: 28 DLKHVKKLSTG-------HTLVMGRKTFESIG---KPLPNRRNVVLTSDTS----FNVEG 73
Query: 86 VTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTR 145
V S++ L +V++ GG ++++
Sbjct: 74 VDVIHSIEDIYQL---------PGHVFIFGGQTLFEEMI--------------------- 103
Query: 146 KSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSL-SDKFQLIKDPNIPDDV 204
D +Y+T I F DTFFP + +++ D
Sbjct: 104 -------------------DKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLD- 143
Query: 205 QKENDLNFQFKVFQK 219
++N + F +
Sbjct: 144 -EKNTIPHTFLHLIR 157
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme;
2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A
2jyb_A
Length = 162
Score = 124 bits (313), Expect = 8e-36
Identities = 29/195 (14%), Positives = 71/195 (36%), Gaps = 67/195 (34%)
Query: 26 DMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTGPN 85
D + + V++GR T++S+ LPG +V++R+ +
Sbjct: 29 DKKQYRSRIAD-------DPVVLGRTTFESMR---DDLPGSAQIVMSRSE---RSFSVDT 75
Query: 86 VTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTR 145
+S+++A+D+ + E +VIGG++IY L +
Sbjct: 76 AHRAASVEEAVDIAA----SLDAETAYVIGGAAIYALFQ--------------------- 110
Query: 146 KSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKDPNIPDDV 204
P+ D++ ++++ ++ DT++P +++L
Sbjct: 111 -------------------PHLDRMVLSRVPGEYEGDTYYPEWDAAEWEL---------D 142
Query: 205 QKENDLNFQFKVFQK 219
+ + F + + +
Sbjct: 143 AETDHEGFTLQEWVR 157
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS
antifolate complex, methyltransfe multifunctional
enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB:
3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A*
3kjs_A*
Length = 521
Score = 126 bits (318), Expect = 1e-33
Identities = 58/228 (25%), Positives = 78/228 (34%), Gaps = 63/228 (27%)
Query: 24 RKDMAHFSRIT------KKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDL 77
+DM F +T + + NAV+MGRKTWDSIP KFRPLPGR NVVL+
Sbjct: 46 PEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGRKTWDSIPPKFRPLPGRLNVVLSSTLTT 105
Query: 78 GSQL------------TGPNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEP 125
L V L+QA+ LL IE V+ IGG S+Y
Sbjct: 106 QHLLDGLPDEEKRNLHADSIVAVNGGLEQALRLLASPNYTPSIETVYCIGGGSVYA---- 161
Query: 126 LMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCD---KVYVTQIH-HHFDC 181
E+L P +Y T I C
Sbjct: 162 ----------------------------------EALRPPCVHLLQAIYRTTIRASESSC 187
Query: 182 DTFFP-SLSDKFQLIKDPNIPDDVQKENDL--NFQFKVFQKELAPKPH 226
FF S + + +E + K + ++L P+
Sbjct: 188 SVFFRVPESGTEAAAGIEWQRETISEELTSANGNETKYYFEKLIPRNR 235
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH,
oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage
T4} SCOP: c.71.1.1
Length = 193
Score = 112 bits (282), Expect = 7e-31
Identities = 36/208 (17%), Positives = 62/208 (29%), Gaps = 73/208 (35%)
Query: 25 KDMAHFSRITK-KTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNS-DLGSQLT 82
KD+ +F T+ +IMG KT+ S+P LPGR ++V+ + D
Sbjct: 35 KDLQNFKARTEGTI--------MIMGAKTFQSLP---TLLPGRSHIVVCDLARDYPVTKD 83
Query: 83 GPNVTTTSSLDQAIDLL------------RHKKSKGEIENVWVIGGSSIYKLTEPLMNRL 130
G + +Q I + + + V VIGG ++
Sbjct: 84 GDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQNSKVSVIGGPALLYAAL------ 137
Query: 131 STFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQI------HHHFDCDTF 184
PY D+V V++I + D
Sbjct: 138 ----------------------------------PYADEVVVSRIVKRHRVNSTVQLDAS 163
Query: 185 FPSLSDKFQLIKDPNIPDDVQKENDLNF 212
F K ++++ D + L
Sbjct: 164 FLDDISKREMVETHWYKID--EVTTLTE 189
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase;
2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Length = 168
Score = 110 bits (276), Expect = 3e-30
Identities = 40/170 (23%), Positives = 55/170 (32%), Gaps = 54/170 (31%)
Query: 26 DMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTGPN 85
D +F +IT + V+MGR T++ I RPLP R NVVLTR
Sbjct: 27 DRKNFRKITT------EIGNVVMGRITFEEIG---RPLPERLNVVLTRRPKT--SNNPSL 75
Query: 86 VTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCTR 145
V S + L K + V VIGG +++
Sbjct: 76 VFFNGSPADVVKFLEGKGYE----RVAVIGGKTVF------------------------- 106
Query: 146 KSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHF-DCDTFFPSLSDKFQL 194
E L D+++VT + F FF F L
Sbjct: 107 -------------TEFLREKLVDELFVTVEPYVFGKGIPFFDEFEGYFPL 143
>3kgy_A Bifunctional deaminase-reductase domain protein; putative
dihydrofolate reductase, structural genomics; HET: MSE
NDP; 1.50A {Chloroflexus aurantiacus j-10-fl}
Length = 231
Score = 48.1 bits (114), Expect = 5e-07
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 41 NRVNAVIMGRKTWDSIPEKF--RPLPGRYNVVLTRNSDLGSQLTGPNVTTTSSLDQAIDL 98
R A IMG++ ++ + VLT G + L
Sbjct: 94 ERTGAHIMGKRMFEGGERGWPEEAPFHTPVYVLTHERRNPWVRPGGTTFYFVNDGPEQAL 153
Query: 99 LRHKKSKGEIENVWVIGGSSIYKLTEPLMN-------RLSTFP 134
+++ GE ++ + GG++ + + +N ++ P
Sbjct: 154 ALAREAAGE-RDIRISGGAN---VIQQYLNLGLVDELEIALIP 192
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Length = 197
Score = 43.9 bits (104), Expect = 1e-05
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 41 NRVNAVIMGRKTWDSIPEKFRPLP-GRYNVVLTRNSDLGSQLTGPNVTTTSSLDQAIDLL 99
RV+ ++MGR T D + P + VL+ Q V + +D++
Sbjct: 62 ERVDGLVMGRNTLDMVLSFDCDWPYSKPVFVLSNTMTEVPQGYEDKVFLVK--GKLVDII 119
Query: 100 RHKKSKGEIENVWVIGGSSI 119
+KG +++ GG +I
Sbjct: 120 ADLNAKGF-NELYIDGGVTI 138
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center
for structural genomics, JCSG, protein structu
initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Length = 178
Score = 43.8 bits (104), Expect = 1e-05
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 41 NRVNAVIMGRKTWDSI----PEKFRPLPGRYNVVLTRNSDLGSQLTGPNVTTTS-SLDQA 95
++++ VIMGR T++ + + R ++T + + S +
Sbjct: 46 SKIDTVIMGRTTYEQVTQKLSPEKYVYADRQTYIVTSH----LGEDTDKIKYWKQSPVEL 101
Query: 96 IDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMN-------RLSTFP 134
+ ++ +K K +VW++GG+ + +PL+ L+T P
Sbjct: 102 VKRIQKEKGK----DVWIVGGAK---IIDPLVQANLIDTYILTTVP 140
>2xw7_A Dihydrofolate reductase; oxidoreductase, NADPH; HET: PG4 NDP; 2.00A
{Mycobacterium smegmatis}
Length = 178
Score = 43.5 bits (103), Expect = 1e-05
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 41 NRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTGPNVTTTSSLDQAIDLLR 100
+ ++MG T++ + E + VLT ++ ++ + S D A
Sbjct: 46 ETIGVLVMGASTYEWVVEHGDWSYDQPAWVLTHRPEIAAE--SHPMQVFSG-DVAELHPE 102
Query: 101 HKKSKGEIENVWVIGGSSI 119
+ G ++VWV+GG +
Sbjct: 103 LVAAAGG-KDVWVVGGGDV 120
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Length = 189
Score = 40.8 bits (96), Expect = 1e-04
Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 30/114 (26%)
Query: 41 NRVNAVIMGRKTWDSI---------PEKFRPLPGRYN----VVLTRNSDLGSQLTGPNVT 87
N+++ ++ GRK++D P+ + L + V +R + ++ +
Sbjct: 46 NQIDTILYGRKSFDLWGQYIPKNEDPDTEKELWKLVHSKKKYVFSRTQN---EIDNQAIF 102
Query: 88 TTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMN-------RLSTFP 134
++ + ++ L+ K ++W+ GG+S L +N RLS P
Sbjct: 103 INDNILEEVNKLKKNPGK----DIWLYGGAS---LITTFINLGLVDEFRLSIHP 149
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.011
Identities = 37/206 (17%), Positives = 64/206 (31%), Gaps = 52/206 (25%)
Query: 56 IPEKFRPLPGRYNVVLTRNSDLGSQLTGPNVTTT--SSLDQ-AIDLLRHKKSKGEI--EN 110
I E R ++ N D +TT SSL+ R + + +
Sbjct: 333 IAESIRDGLATWDNWKHVNCD--------KLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 111 VWV-------IGGSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLN 163
+ I I ++N+L K L+ K S+ S+ L
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKL----HKYSLV----EKQPKESTISIPSIYLELK 436
Query: 164 SPYCDKV---------YVTQIHHHFDCDTFFPSLSDK--FQLI----KDPNIPDDVQKEN 208
++ Y I FD D P D+ + I K+ P+ +
Sbjct: 437 VKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 209 D--LNFQFKVFQKELAPKPHSLNVWN 232
L+F+F ++++ H WN
Sbjct: 495 MVFLDFRF--LEQKIR---HDSTAWN 515
Score = 34.1 bits (77), Expect = 0.047
Identities = 36/228 (15%), Positives = 67/228 (29%), Gaps = 61/228 (26%)
Query: 5 TVFLKVQGFFFEACQIFYTRKDMAHFSRITKKTEN-SNRVNAVIMGRK----------TW 53
TV +Q ++ + +R D H S I + + + ++ +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSD--HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 54 DS-IPEKF----RPLPGRYNVVLTRNSDLGSQLTGPNVTTTSSLDQAIDLLRHKKSKGEI 108
++ F + L + TR + L TT SLD L + K +
Sbjct: 255 NAKAWNAFNLSCKIL------LTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 109 ENVWVIGGSSIYKL------TEPLMNRLSTFPKKKGLILLCT----RKSNASFMFSVL-- 156
++ L T P LS + L T + N + +++
Sbjct: 308 LK-YL--DCRPQDLPREVLTTNPRR--LSIIAESIR-DGLATWDNWKHVNCDKLTTIIES 361
Query: 157 SLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLSDKFQLIKDPNIPDDV 204
SL L K++ + FP +IP +
Sbjct: 362 SL-NVLEPAEYRKMFD-------RL-SVFP---------PSAHIPTIL 391
Score = 28.3 bits (62), Expect = 3.4
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 29/96 (30%)
Query: 176 HHHFDCDT---------FFPSLSDKF--------------QLIKDPNIPDDVQKENDLNF 212
HHH D +T D F ++ I + ++ ++
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 213 QFKVFQKELAPKPHS-----LNVWNHKNYNFRVTVI 243
++F L K + NY F ++ I
Sbjct: 64 TLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPI 98
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine
biosynthesis, NAD, ST genomics, PSI, protein structure
initiative; 1.65A {Mycobacterium tuberculosis} SCOP:
c.77.1.1 PDB: 2g4o_A
Length = 337
Score = 30.2 bits (69), Expect = 0.62
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 6/26 (23%)
Query: 64 PGRYNVVLTRN------SDLGSQLTG 83
PGR++V++T N +DL + + G
Sbjct: 222 PGRFDVIVTDNLFGDIITDLAAAVCG 247
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell
division, DNA replication, nuclear protein; HET: DNA;
NMR {Homo sapiens} SCOP: g.39.1.12
Length = 117
Score = 28.9 bits (64), Expect = 0.82
Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 10/70 (14%)
Query: 164 SPYCDKVYVTQIHHHFDCDTFFPSLSDKFQLIKDPNIPDDVQKENDLNF--------QFK 215
+P+ + + +H C F L K +++ +L
Sbjct: 38 NPFSESGGDMKEWYHIKC--MFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQHIA 95
Query: 216 VFQKELAPKP 225
+ A P
Sbjct: 96 DLSSKAAGTP 105
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative
decarboxylase, amino-acid biosynthes lysine
biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB:
3ty3_A
Length = 366
Score = 29.1 bits (66), Expect = 1.3
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 6/26 (23%)
Query: 64 PGRYNVVLTRN------SDLGSQLTG 83
P ++VV+ N SD + L G
Sbjct: 246 PECFDVVVAPNLYGDILSDGAASLIG 271
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase, lysine biosyn; 1.85A {Thermus
thermophilus} PDB: 3asj_A* 3ah3_A
Length = 333
Score = 29.0 bits (66), Expect = 1.6
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 6/26 (23%)
Query: 64 PGRYNVVLTRN------SDLGSQLTG 83
P R++V++T N SDL + L G
Sbjct: 213 PERFDVIVTTNLLGDILSDLAAGLVG 238
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 28.5 bits (64), Expect = 2.2
Identities = 6/33 (18%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 88 TTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIY 120
S++ + L ++ + + + +VI SS+
Sbjct: 56 FKESVNTLLKELE-EQLQKSLRSDFVISFSSVS 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 2.9
Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 40/148 (27%)
Query: 81 LTGPNV-TTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGL 139
L G ++ + L Q D K+K I+N Y + R F KK
Sbjct: 96 LEGNDIHALAAKLLQENDT-TLVKTKELIKN---------YITARIMAKR--PFDKKSNS 143
Query: 140 ILL-CTRKSNASFM--F-------SVLS-LQESLNSPYCDKVYVTQI------------H 176
L + NA + F L++ L Y V V +
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD-LYQTY--HVLVGDLIKFSAETLSELIR 200
Query: 177 HHFDCDTFFPSLSDKFQLIKDPN-IPDD 203
D + F + + +++P+ PD
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDK 228
Score = 28.5 bits (63), Expect = 3.0
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 74 NSDLGSQ--LTGPNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLM 127
N + Q G +LD ++L K + I+ + + S+ ++ L
Sbjct: 1847 NVE-NQQYVAAG----DLRALDTVTNVLNFIKLQK-IDIIELQKSLSLEEVEGHLF 1896
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A
{Saccharomyces cerevisiae}
Length = 386
Score = 27.4 bits (60), Expect = 4.6
Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 18/113 (15%)
Query: 141 LLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHH----HFDCDTFFPSLSDKF---- 192
+L + SN + + +LN QI + + + ++
Sbjct: 277 ILQLKISNLNEFKLLFDFWYALNP--------AQIQAILLKYKPANKGEAGVPNEILNYL 328
Query: 193 -QLIKDPNIPDDVQKENDLNFQFKVFQKEL-APKPHSLNVWNHKNYNFRVTVI 243
+IK N+ + E L+ QF + L N + +I
Sbjct: 329 ANVIKRENLSLPGKMEIMLSAQFDSAKNHLRYDTSAITQNSNTEGLATVSKII 381
>2hb0_A CFA/I fimbrial subunit E; CFAE, adhesin, ETEC, traveler'S disease,
cell adhesion; 2.30A {Escherichia coli}
Length = 369
Score = 27.0 bits (59), Expect = 6.1
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 58 EKFRPLPGRY----NVVLTRNSD-LGSQLTGPNVTTTSSLDQAIDLLR 100
+ P G+Y + T +S L ++ N+T T+S+D IDLL+
Sbjct: 314 KVKNPEAGQYMGNIKITFTPSSQTLDNKQVEKNITVTASVDPVIDLLQ 361
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 26.9 bits (59), Expect = 6.6
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 174 QIHHHF-DCDTFFPSLSDKFQLIKDPNIPDDVQKENDLNFQFKVFQKEL 221
+ + D +S+K + P + D L +F+ F +E
Sbjct: 111 HLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARET 159
>2wzp_P Lactococcal phage P2 ORF15; baseplate, viral protein; 2.60A
{Lactococcus phage P2} PDB: 2x53_S 2x54_S 2x5a_S
Length = 326
Score = 27.0 bits (59), Expect = 6.6
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 172 VTQIHHHFDCDTFFPSLSDKFQLIKDPNIPDDV--QKENDLNFQFKVFQ 218
+TQ F +TF SL + +QL+KD +D+ +K L +Q ++FQ
Sbjct: 84 ITQPQIEFKLETFGESLEENYQLMKD--FVNDILSKKFVTLEYQTEIFQ 130
>3f83_A Fusion of the minor pilin CFAE and major pilin CF; ETEC, E. coli,
CFA/I, CFAB, diarrhea, fimbriae, projection, fimbrium,
cell adhesion; 2.30A {Escherichia coli}
Length = 519
Score = 26.7 bits (58), Expect = 9.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 62 PLPGRY----NVVLTRNSDLGSQLTGPNVTTTSSLDQAIDLL 99
P G Y ++V+T SD ++ N+T T+S+D IDLL
Sbjct: 472 PTAGNYSGVVSLVMTLGSD--NKQVEKNITVTASVDPVIDLL 511
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.414
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,809,355
Number of extensions: 207228
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 481
Number of HSP's successfully gapped: 73
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)