RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1579
(258 letters)
>d1kmva_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 186
Score = 103 bits (258), Expect = 5e-28
Identities = 62/198 (31%), Positives = 100/198 (50%), Gaps = 43/198 (21%)
Query: 24 RKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTG 83
R + +F R+T + + N VIMG+KTW SIPEK RPL GR N+VL+R Q
Sbjct: 28 RNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQ--- 84
Query: 84 PNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLC 143
+ SLD A+ L + +++ VW++GGSS+Y
Sbjct: 85 GAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVY----------------------- 121
Query: 144 TRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKD-PNIP 201
+E++N P K++VT+I F+ DTFFP + +K++L+ + P +
Sbjct: 122 ---------------KEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVL 166
Query: 202 DDVQKENDLNFQFKVFQK 219
DVQ+E + ++F+V++K
Sbjct: 167 SDVQEEKGIKYKFEVYEK 184
>d2fzia1 c.71.1.1 (A:1-206) Dihydrofolate reductases, eukaryotic
type {Fungus (Pneumocystis carinii) [TaxId: 4754]}
Length = 206
Score = 95.7 bits (237), Expect = 1e-24
Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 55/215 (25%)
Query: 24 RKDMAHFSRITKKTENSNRV---NAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQ 80
+K++++F R+T + N V+MGRKTW+SIP +FRPL GR NVV+TRN L
Sbjct: 30 KKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLG 89
Query: 81 LTGPNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLI 140
+ + + + +S +I ++VIGG+ +YK
Sbjct: 90 NGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAM---------------- 133
Query: 141 LLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLSD--KFQLIK-- 196
+ P D++ T I+ CD FFP ++ +
Sbjct: 134 ----------------------DHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKK 171
Query: 197 ----------DPNIPDDVQKENDLNFQFKVFQKEL 221
+P E+ +++F+++ ++L
Sbjct: 172 EKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL 206
>d1j3ka_ c.71.1.1 (A:) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, DFR domain {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 231
Score = 96.1 bits (238), Expect = 1e-24
Identities = 51/225 (22%), Positives = 83/225 (36%), Gaps = 77/225 (34%)
Query: 24 RKDMAHFSRITKKTENSNRV----------------------------NAVIMGRKTWDS 55
DM +F +T S N V+MGR W+S
Sbjct: 52 SLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVMGRTNWES 111
Query: 56 IPEKFRPLPGRYNVVLTRNSDLGSQLTGPNVTTTSSLDQAIDLLRHKKSKGEIENVWVIG 115
IP+KF+PL R NV+L+R L + +V + ++ I LL +++G
Sbjct: 112 IPKKFKPLSNRINVILSRT--LKKEDFDEDVYIINKVEDLIVLLGKL----NYYKCFILG 165
Query: 116 GSSIYKLTEPLMNRLSTFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQI 175
GS +Y QE L K+Y T+I
Sbjct: 166 GSVVY--------------------------------------QEFLEKKLIKKIYFTRI 187
Query: 176 HHHFDCDTFFPSLS-DKFQLIKDPNIPDDVQKENDLNFQFKVFQK 219
+ ++CD FFP ++ +++Q+I DV N+ F +++K
Sbjct: 188 NSTYECDVFFPEINENEYQIISV----SDVYTSNNTTLDFIIYKK 228
>d1aoea_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 192
Score = 89.9 bits (222), Expect = 1e-22
Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 58/208 (27%)
Query: 24 RKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTG 83
RK++ +F +T +T N NAVIMGRKTW+SIP+KFRPLP R N++L+R+ + +++
Sbjct: 30 RKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYE--NEIID 87
Query: 84 PNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLC 143
N+ SS++ +++L+ ++E V++IGG+ IY
Sbjct: 88 DNIIHASSIESSLNLVS------DVERVFIIGGAEIY----------------------- 118
Query: 144 TRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHH----HFDCDTFFPSLSDKFQLIK--- 196
E +N+ + +T+I H + DTF + +
Sbjct: 119 ---------------NELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSE 163
Query: 197 -----DPNIPDDVQKENDLNFQFKVFQK 219
+ +D KE D + + ++ +
Sbjct: 164 LQKFVGDTVLEDDIKEGDFTYNYTLWTR 191
>d1seja1 c.71.1.1 (A:3-180) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, DFR domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 178
Score = 83.3 bits (205), Expect = 2e-20
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 50/197 (25%)
Query: 24 RKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTG 83
+D+ FS+IT +SN+ NA+IMGRKTWDSI + L R VV++ + L
Sbjct: 28 SEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIGRRP--LKNRIIVVISSS--LPQDEAD 83
Query: 84 PNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLC 143
PNV +L+ +I+ L + S IEN++V GG SIY+
Sbjct: 84 PNVVVFRNLEDSIENLMNDDS---IENIFVCGGESIYRDALK------------------ 122
Query: 144 TRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHH-FDCDTFFPSLSDKFQLIKDPNIPD 202
+ D++Y+T++ + DT+FP + + F +
Sbjct: 123 --------------------DNFVDRIYLTRVALEDIEFDTYFPEIPETFLPV----YMS 158
Query: 203 DVQKENDLNFQFKVFQK 219
++++ F +F+K
Sbjct: 159 QTFCTKNISYDFMIFEK 175
>d1juva_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Bacteriophage T4 [TaxId: 10665]}
Length = 193
Score = 82.5 bits (203), Expect = 8e-20
Identities = 34/214 (15%), Positives = 63/214 (29%), Gaps = 73/214 (34%)
Query: 24 RKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNS-DLGSQLT 82
+KD+ +F T+ +IMG KT+ S+ LPGR ++V+ + D
Sbjct: 34 KKDLQNFKARTEG-------TIMIMGAKTFQSL---PTLLPGRSHIVVCDLARDYPVTKD 83
Query: 83 GPNVTTTSSLDQAIDLL------------RHKKSKGEIENVWVIGGSSIYKLTEPLMNRL 130
G + +Q I + + + V VIGG ++
Sbjct: 84 GDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQNSKVSVIGGPALLYAAL------ 137
Query: 131 STFPKKKGLILLCTRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDC------DTF 184
PY D+V V++I D
Sbjct: 138 ----------------------------------PYADEVVVSRIVKRHRVNSTVQLDAS 163
Query: 185 FPSLSDKFQLIKDPNIPDDVQKENDLNFQFKVFQ 218
F K ++++ + + V++
Sbjct: 164 FLDDISKREMVET----HWYKIDEVTTLTESVYK 193
>d1df7a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 159
Score = 74.0 bits (181), Expect = 5e-17
Identities = 44/199 (22%), Positives = 68/199 (34%), Gaps = 68/199 (34%)
Query: 24 RKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTG 83
+D AHF IT + ++MGR+TWDS+P K RPLPGR NVVL+R +
Sbjct: 25 PEDQAHFREITMG-------HTIVMGRRTWDSLPAKVRPLPGRRNVVLSRQ----ADFMA 73
Query: 84 PNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLC 143
SL++A+ WVIGG +Y L
Sbjct: 74 SGAEVVGSLEEALT----------SPETWVIGGGQVYALAL------------------- 104
Query: 144 TRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFD---CDTFFPSLSDKFQLIKDPNI 200
PY + VT++ D P L + ++
Sbjct: 105 ---------------------PYATRCEVTEVDIGLPREAGDALAPVLDETWRGETG--- 140
Query: 201 PDDVQKENDLNFQFKVFQK 219
+ + L ++ + +
Sbjct: 141 -EWRFSRSGLRYRLYSYHR 158
>d1ra9a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Escherichia coli [TaxId: 562]}
Length = 159
Score = 70.9 bits (173), Expect = 7e-16
Identities = 47/197 (23%), Positives = 72/197 (36%), Gaps = 64/197 (32%)
Query: 24 RKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTG 83
D+A F R T VIMGR TW+SI RPLPGR N++L+ T
Sbjct: 25 PADLAWFKRNTLD-------KPVIMGRHTWESI---GRPLPGRKNIILSSQPG-----TD 69
Query: 84 PNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLC 143
VT S+D+AI + + VIGG +Y+
Sbjct: 70 DRVTWVKSVDEAIAACGD------VPEIMVIGGGRVYEQFL------------------- 104
Query: 144 TRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKDPNIPD 202
P K+Y+T I + DT FP D ++ + +
Sbjct: 105 ---------------------PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVF--SEFH 141
Query: 203 DVQKENDLNFQFKVFQK 219
D +N ++ F++ ++
Sbjct: 142 DADAQNSHSYCFEILER 158
>d1vdra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Haloferax volcanii [TaxId: 2246]}
Length = 157
Score = 64.7 bits (157), Expect = 1e-13
Identities = 29/197 (14%), Positives = 70/197 (35%), Gaps = 67/197 (34%)
Query: 24 RKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTG 83
D + + V++GR T++S+ LPG +V++R+ +
Sbjct: 26 PADKKQYRSRIAD-------DPVVLGRTTFESM---RDDLPGSAQIVMSRSER---SFSV 72
Query: 84 PNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLC 143
+S+++A+D+ + E +VIGG++IY
Sbjct: 73 DTAHRAASVEEAVDIAASL----DAETAYVIGGAAIYA---------------------- 106
Query: 144 TRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKDPNIPD 202
L P+ D++ ++++ ++ DT++P +++L
Sbjct: 107 ------------------LFQPHLDRMVLSRVPGEYEGDTYYPEWDAAEWEL-------- 140
Query: 203 DVQKENDLNFQFKVFQK 219
+ + F + + +
Sbjct: 141 -DAETDHEGFTLQEWVR 156
>d3dfra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Lactobacillus casei [TaxId: 1582]}
Length = 162
Score = 64.4 bits (156), Expect = 1e-13
Identities = 32/197 (16%), Positives = 60/197 (30%), Gaps = 61/197 (30%)
Query: 24 RKDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTG 83
D+ +F T +++GR+T++S P++ P R NVVLT
Sbjct: 24 PDDLHYFRAQTVG-------KIMVVGRRTYESFPKRPLP--ERTNVVLTHQE----DYQA 70
Query: 84 PNVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLC 143
+ + + + + GG+ I+ +
Sbjct: 71 QGAVVVHDVAAVFAYAKQHLDQ----ELVIAGGAQIFTAFKD------------------ 108
Query: 144 TRKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHFDCDTFFPSLS-DKFQLIKDPNIPD 202
D + VT++ F+ DT L+ D F + + D
Sbjct: 109 ----------------------DVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRTVED 146
Query: 203 DVQKENDLNFQFKVFQK 219
L ++V+QK
Sbjct: 147 ---TNPALTHTYEVWQK 160
>d1d1ga_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Thermotoga maritima [TaxId: 2336]}
Length = 164
Score = 44.1 bits (103), Expect = 2e-06
Identities = 31/171 (18%), Positives = 49/171 (28%), Gaps = 54/171 (31%)
Query: 25 KDMAHFSRITKKTENSNRVNAVIMGRKTWDSIPEKFRPLPGRYNVVLTRNSDLGSQLTGP 84
+D +F +IT + V+MGR T++ I P + + +
Sbjct: 26 EDRKNFRKITT------EIGNVVMGRITFEEIGR-----PLPERLNVVLTRRPKTSNNPS 74
Query: 85 NVTTTSSLDQAIDLLRHKKSKGEIENVWVIGGSSIYKLTEPLMNRLSTFPKKKGLILLCT 144
V S + L K E V VIGG +++
Sbjct: 75 LVFFNGSPADVVKFLEGK----GYERVAVIGGKTVF------------------------ 106
Query: 145 RKSNASFMFSVLSLQESLNSPYCDKVYVTQIHHHF-DCDTFFPSLSDKFQL 194
E L D+++VT + F FF F L
Sbjct: 107 --------------TEFLREKLVDELFVTVEPYVFGKGIPFFDEFEGYFPL 143
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 101
Score = 28.1 bits (62), Expect = 0.38
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 177 HHF--DCDTFFPSLSDKFQLIKDPNIPDDVQKENDLNFQFKVFQKELA 222
H F D D + +K L+ + D+ +L + K + ELA
Sbjct: 1 HQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELA 48
>d1r5aa1 a.45.1.1 (A:87-215) Class delta GST {Mosquito (Anopheles
dirus b), isozyme 1-5 [TaxId: 123217]}
Length = 129
Score = 26.5 bits (58), Expect = 2.0
Identities = 10/49 (20%), Positives = 15/49 (30%)
Query: 178 HFDCDTFFPSLSDKFQLIKDPNIPDDVQKENDLNFQFKVFQKELAPKPH 226
HFD T + + D + D K+ L F+ L
Sbjct: 14 HFDLGTLYQRVVDYYFPTIHLGAHLDQTKKAKLAEALGWFEAMLKQYQW 62
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 110
Score = 26.1 bits (57), Expect = 2.0
Identities = 7/45 (15%), Positives = 20/45 (44%)
Query: 178 HFDCDTFFPSLSDKFQLIKDPNIPDDVQKENDLNFQFKVFQKELA 222
+ F LS+ L+ + D+ N+L + ++ + +++
Sbjct: 8 NTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADIS 52
>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179
{Thermus thermophilus [TaxId: 274]}
Length = 231
Score = 25.6 bits (55), Expect = 6.4
Identities = 6/78 (7%), Positives = 18/78 (23%), Gaps = 1/78 (1%)
Query: 163 NSPYCDKVYVTQ-IHHHFDCDTFFPSLSDKFQLIKDPNIPDDVQKENDLNFQFKVFQKEL 221
+ P+ + V + + +P + + + P + + F
Sbjct: 93 DIPHLTEEAVRFVLDKAPEAALVYPIVPKEAVEARFPRTKRTYARLREGTFTGGNLLLLD 152
Query: 222 APKPHSLNVWNHKNYNFR 239
+ R
Sbjct: 153 KSLFRKALPLARRVVALR 170
>d1jlva1 a.45.1.1 (A:85-207) Class delta GST {Mosquito (Anopheles
dirus b), isozyme 1-3 [TaxId: 123217]}
Length = 123
Score = 24.7 bits (53), Expect = 7.9
Identities = 7/49 (14%), Positives = 15/49 (30%)
Query: 178 HFDCDTFFPSLSDKFQLIKDPNIPDDVQKENDLNFQFKVFQKELAPKPH 226
+FD T + +D + P + + E + L +
Sbjct: 14 YFDMGTLYQRFADYYYPQIFAKQPANAENEKKMKDAVDFLNTFLDGHKY 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.414
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 952,316
Number of extensions: 41893
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 30
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)