BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy158
         (116 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DAW|B Chain B, Structure Of The Actin-Depolymerizing Factor Homology
           Domain In Complex With Actin
          Length = 164

 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 23/28 (82%), Positives = 26/28 (92%)

Query: 3   VFIYSMPGYSLPIKERMLYSSCKAPLLE 30
           VFIYSMPGY+  I+ERMLYSSCK+PLLE
Sbjct: 96  VFIYSMPGYTCSIRERMLYSSCKSPLLE 123


>pdb|2D8B|A Chain A, Solution Structure Of The Second Tandem Cofilin-Domain Of
           Mouse Twinfilin
          Length = 166

 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 23/28 (82%), Positives = 26/28 (92%)

Query: 3   VFIYSMPGYSLPIKERMLYSSCKAPLLE 30
           VFIYSMPGY+  I+ERMLYSSCK+PLLE
Sbjct: 101 VFIYSMPGYTCSIRERMLYSSCKSPLLE 128


>pdb|2HD7|A Chain A, Solution Structure Of C-Teminal Domain Of Twinfilin-1
          Length = 142

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/28 (82%), Positives = 26/28 (92%)

Query: 3   VFIYSMPGYSLPIKERMLYSSCKAPLLE 30
           VFIYSMPGY+  I+ERMLYSSCK+PLLE
Sbjct: 80  VFIYSMPGYTCSIRERMLYSSCKSPLLE 107


>pdb|2W0I|A Chain A, Structure Of C-Terminal Actin Depolymerizing Factor
           Homology (Adf-H) Domain Of Human Twinfilin-2
          Length = 135

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/30 (73%), Positives = 26/30 (86%)

Query: 3   VFIYSMPGYSLPIKERMLYSSCKAPLLENL 32
           VFIYSMPGY   IKERMLYSSCK+ LL+++
Sbjct: 76  VFIYSMPGYKCSIKERMLYSSCKSRLLDSV 105


>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (
           Tp53i3,Pig3)
          Length = 354

 Score = 26.2 bits (56), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 87  FDKPKGPPNRGAKRITKP 104
           FDKP GP N   K + KP
Sbjct: 28  FDKPGGPENLYVKEVAKP 45


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.138    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,965,412
Number of Sequences: 62578
Number of extensions: 74395
Number of successful extensions: 85
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 6
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)