Query psy158
Match_columns 116
No_of_seqs 107 out of 366
Neff 2.9
Searched_HMMs 46136
Date Fri Aug 16 21:38:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1747|consensus 100.0 7E-30 1.5E-34 213.4 7.1 92 1-108 250-342 (342)
2 PLN03216 actin depolymerizing 99.7 7.1E-17 1.5E-21 118.3 4.1 55 1-76 86-140 (141)
3 PF00241 Cofilin_ADF: Cofilin/ 99.6 1.6E-16 3.4E-21 110.1 3.2 56 1-77 72-127 (127)
4 cd00013 ADF Actin depolymerisa 99.6 2.5E-16 5.3E-21 109.5 3.9 55 1-76 78-132 (132)
5 smart00102 ADF Actin depolymer 99.6 7.4E-16 1.6E-20 108.2 4.1 56 1-77 72-127 (127)
6 KOG1735|consensus 99.4 5.7E-14 1.2E-18 106.8 3.3 58 1-79 86-143 (146)
7 PTZ00152 cofilin/actin-depolym 99.3 2.2E-13 4.8E-18 99.2 1.4 35 1-38 72-106 (122)
8 KOG1736|consensus 98.8 2.6E-09 5.6E-14 81.5 4.0 54 2-77 88-141 (143)
9 KOG1747|consensus 98.6 1.9E-08 4.1E-13 85.3 3.6 59 1-78 79-137 (342)
10 KOG3655|consensus 96.1 0.0067 1.5E-07 54.1 4.0 57 1-78 79-135 (484)
11 PF00106 adh_short: short chai 46.9 23 0.00051 24.1 2.8 31 2-33 130-160 (167)
12 PF06375 BLVR: Bovine leukaemi 36.9 11 0.00025 29.1 0.0 13 57-69 99-111 (154)
13 PF09998 DUF2239: Uncharacteri 32.7 64 0.0014 26.1 3.6 34 68-101 54-87 (187)
14 PRK12747 short chain dehydroge 32.6 38 0.00083 24.9 2.2 28 2-30 140-167 (252)
15 PF07981 Plasmod_MYXSPDY: Plas 29.6 14 0.0003 19.7 -0.4 11 5-15 1-11 (17)
16 PRK08594 enoyl-(acyl carrier p 28.3 60 0.0013 24.5 2.7 29 2-31 143-171 (257)
17 COG1393 ArsC Arsenate reductas 27.3 77 0.0017 22.9 3.0 10 1-10 1-10 (117)
18 PRK07578 short chain dehydroge 24.9 77 0.0017 22.5 2.6 30 2-32 107-136 (199)
19 PRK06603 enoyl-(acyl carrier p 22.8 89 0.0019 23.6 2.7 28 2-30 142-169 (260)
20 PF11433 DUF3198: Protein of u 22.6 48 0.001 21.9 1.1 18 17-34 8-25 (51)
21 PF03896 TRAP_alpha: Transloco 21.9 44 0.00094 28.0 0.9 20 56-75 238-259 (285)
22 PF07292 NID: Nmi/IFP 35 domai 20.5 31 0.00068 24.3 -0.2 24 64-94 61-84 (88)
23 PRK06463 fabG 3-ketoacyl-(acyl 20.3 83 0.0018 23.2 2.1 29 2-30 133-161 (255)
No 1
>KOG1747|consensus
Probab=99.96 E-value=7e-30 Score=213.41 Aligned_cols=92 Identities=54% Similarity=0.956 Sum_probs=88.6
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhh-cCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHH-LGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHPK 79 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~-~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P~ 79 (116)
.+||||+||+|+|.||+||||||||++|++.+.. +||.|++++| ++|++|||+++|.|++||.
T Consensus 250 s~~FIYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiE----------------i~d~~eLte~~L~e~~Hp~ 313 (342)
T KOG1747|consen 250 SIVFIYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIE----------------IDDGAELTEKFLYEELHPK 313 (342)
T ss_pred eEEEEEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEe----------------eCcHHHhhHHHHHHhhCcc
Confidence 3799999999999999999999999999999985 9999999999 9999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCch
Q psy158 80 KTAERPKFDKPKGPPNRGAKRITKPQATP 108 (116)
Q Consensus 80 ~~~~k~~FaKPkgP~rRg~~r~~k~~~~~ 108 (116)
+.+.++.|++|+||++||++|++++++|+
T Consensus 314 ~i~h~qafa~P~~p~~rg~~R~~r~~~e~ 342 (342)
T KOG1747|consen 314 QIAHPQAFAKPKGPGGRGKPRLPRRPAET 342 (342)
T ss_pred cccccccccCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999998874
No 2
>PLN03216 actin depolymerizing factor; Provisional
Probab=99.66 E-value=7.1e-17 Score=118.27 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=50.9
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHh
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEEL 76 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel 76 (116)
++|||||||+ +++||+||||||||++|.+.|. |+ ...+| ++|.+||+++.|.+.+
T Consensus 86 klvFI~w~Pd-~a~vk~KMlYAssK~~lk~~l~--gi--~~~iq----------------atd~~el~~~~~~~~~ 140 (141)
T PLN03216 86 KIFFIAWSPE-ASRIRAKMLYATSKDGLRRVLD--GV--HYELQ----------------ATDPTEMGFDVIRDRA 140 (141)
T ss_pred CEEEEEECCC-CCCHHHHHHHHHHHHHHHHHhc--CC--eEEEE----------------ECChHhcCHHHHHHHh
Confidence 5899999999 9999999999999999999998 75 45799 9999999999998876
No 3
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=99.63 E-value=1.6e-16 Score=110.13 Aligned_cols=56 Identities=43% Similarity=0.705 Sum_probs=49.9
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELH 77 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~ 77 (116)
++|||+|||+ ++|+|+||+||||+++|.+.|. | +...++ ++|.+|||++.|.++|.
T Consensus 72 k~vfI~w~P~-~~~vk~km~yas~k~~l~~~l~--~--~~~~~~----------------~~d~~dl~~~~i~~kl~ 127 (127)
T PF00241_consen 72 KLVFIYWCPD-NAPVKEKMLYASSKASLKKKLG--G--IHIEIQ----------------ASDPDDLSEEEILEKLK 127 (127)
T ss_dssp EEEEEEEEST-TS-HHHHHHHHHHHHHHHHHCT--T--EEEEEE----------------ESSGGGGSHHHHHHHH-
T ss_pred eEEEEEEecC-CccHHHhhhhHHhHHHHHHHhC--C--ceEEEE----------------ECChHHCCHHHHHHhhC
Confidence 5899999999 8999999999999999999998 4 456789 99999999999999873
No 4
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=99.62 E-value=2.5e-16 Score=109.51 Aligned_cols=55 Identities=44% Similarity=0.677 Sum_probs=50.3
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHh
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEEL 76 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel 76 (116)
++|||||||+ ++|+++||+||||+++|.+.|. |+ ...++ ++|.+|||++.|.++|
T Consensus 78 k~vfI~w~P~-~a~~k~km~yas~k~~l~~~l~--~~--~~~i~----------------a~~~~dl~~~~i~~kl 132 (132)
T cd00013 78 KIVFIYWSPE-TAPVKSKMLYASSKAALKRELV--GI--QVEVQ----------------ATDPDELDEEALLEKL 132 (132)
T ss_pred CEEEEEECCC-CCChhhhhhhHHHHHHHHHhcC--Cc--eEEEE----------------ECChhhcCHHHHHhhC
Confidence 5899999999 9999999999999999999887 65 56799 9999999999998865
No 5
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=99.60 E-value=7.4e-16 Score=108.17 Aligned_cols=56 Identities=36% Similarity=0.600 Sum_probs=51.1
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELH 77 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~ 77 (116)
++|||||||+ ++|+++||+|||++++|.+.|+ |+. ..++ ++|.+||+++.|.++|+
T Consensus 72 k~vfI~w~P~-~a~~~~km~yas~k~~l~~~l~--~~~--~~i~----------------~~~~~el~~~~i~~kl~ 127 (127)
T smart00102 72 KIVFIFWSPD-GAPVKSKMLYASSKDTLKKELG--GIQ--VEVQ----------------ATDEDDLDEEALKEKLK 127 (127)
T ss_pred cEEEEEECCC-CCCHHHHHHHHHHHHHHHHHcC--Cce--EEEE----------------ECChhhcCHHHHHHHhC
Confidence 5899999999 8999999999999999999998 654 4689 99999999999999875
No 6
>KOG1735|consensus
Probab=99.44 E-value=5.7e-14 Score=106.84 Aligned_cols=58 Identities=31% Similarity=0.505 Sum_probs=53.4
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHPK 79 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P~ 79 (116)
|++||.|||+ ++|||++|||||||++|...|. |+ ...|| +||++|++.+.|.|.|.+.
T Consensus 86 Ki~f~~wsPd-~a~vKsKMiYaSSkDalkr~L~--Gi--~~elQ----------------atd~~E~~~~~~~ekl~~~ 143 (146)
T KOG1735|consen 86 KIFFIAWSPD-TAPVKSKMIYASSKDALKRELT--GI--QHELQ----------------ATDPSEMSLDSLAEKLGGS 143 (146)
T ss_pred eEEEEEECCC-ccchhhheeehhhHHHHhhhcc--Cc--eeeee----------------cCChHHhhHHHHHHHhccc
Confidence 6899999999 9999999999999999999996 75 56899 9999999999999998764
No 7
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=99.35 E-value=2.2e-13 Score=99.18 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=32.4
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCce
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLT 38 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~ 38 (116)
+++||||||+ ++|||+||||||||++|++.|. |+.
T Consensus 72 klvFI~w~Pd-~a~ik~KMlYASsK~~l~~~l~--Gi~ 106 (122)
T PTZ00152 72 KIHFFMYARE-SSNSRDRMTYASSKQALLKKIE--GVN 106 (122)
T ss_pred CEEEEEECCC-CCChHHhhhhHhHHHHHHHHhc--chh
Confidence 5899999999 9999999999999999999998 554
No 8
>KOG1736|consensus
Probab=98.85 E-value=2.6e-09 Score=81.52 Aligned_cols=54 Identities=31% Similarity=0.524 Sum_probs=50.1
Q ss_pred EEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhC
Q psy158 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELH 77 (116)
Q Consensus 2 ~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~ 77 (116)
+|||||.|. .++.-..||||++|.-|++..+ +.+-+| ++|-+|+|+|||.|.||
T Consensus 88 L~~Iyw~P~-~~~~e~~MmYAgak~~~~~~~~-----~~KvfE----------------ir~tdD~t~e~l~E~L~ 141 (143)
T KOG1736|consen 88 LCFIYWSPV-GCKPEQQMMYAGAKNMLVQTAE-----LTKVFE----------------IRSTDDLTEEWLREKLE 141 (143)
T ss_pred EEEEEecCc-cCCHHHHHHHHHHHHHHHHHhh-----heEEEE----------------ecccccccHHHHHHHhh
Confidence 699999999 9999999999999999998887 467789 99999999999999987
No 9
>KOG1747|consensus
Probab=98.65 E-value=1.9e-08 Score=85.29 Aligned_cols=59 Identities=25% Similarity=0.397 Sum_probs=50.2
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHP 78 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P 78 (116)
.++||.|.|| ++|||+||||||++|.|..... |-.|+.++- ++|.+|||..-....|.+
T Consensus 79 ~w~lIs~vPD-~apVR~KMLYAsTrATlkrefG--~~~i~ee~~----------------~T~~~dl~~~~~~k~l~~ 137 (342)
T KOG1747|consen 79 EWLLISWVPD-NAPVRQKMLYASTRATLKREFG--GAYITEELF----------------ATDLEDLTLLGYFKSLSS 137 (342)
T ss_pred cEEEEEECCC-CChHHHHHHHHHHHHHHHHHhc--cceeccccc----------------cCCHHHhhhHHHHHhhhh
Confidence 3789999999 9999999999999999999998 444777777 899999987776666554
No 10
>KOG3655|consensus
Probab=96.10 E-value=0.0067 Score=54.06 Aligned_cols=57 Identities=23% Similarity=0.369 Sum_probs=48.3
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHP 78 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P 78 (116)
|||||.||.. +.|+=.|-..|+=++-+.+.|. |+.| .|. +++-+||++++|+++|.-
T Consensus 79 KfvLI~W~GE-~vp~~Rka~~ath~a~v~~~lk--g~hV--~i~----------------Ar~e~Dld~d~i~~~ls~ 135 (484)
T KOG3655|consen 79 KFVLINWIGE-GVPVLRKAKCATHKALVKNFLK--GFHV--EIN----------------ARSEEDLDEDAIREKLSK 135 (484)
T ss_pred ceEEEEecCC-ccHHHhhhhhcchHHHHHHHhh--cceE--EEe----------------ccchhhcCHHHHHHHHHh
Confidence 7999999999 8998888888888877777778 5433 577 999999999999999875
No 11
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=46.87 E-value=23 Score=24.05 Aligned_cols=31 Identities=29% Similarity=0.192 Sum_probs=26.3
Q ss_pred EEEEEecCCCCCCcccchhhhhccHHHHHHhh
Q psy158 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLH 33 (116)
Q Consensus 2 ~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~ 33 (116)
+|+|.++-+ ..|....-.|++||+++..-.+
T Consensus 130 iv~~sS~~~-~~~~~~~~~Y~askaal~~~~~ 160 (167)
T PF00106_consen 130 IVNISSIAG-VRGSPGMSAYSASKAALRGLTQ 160 (167)
T ss_dssp EEEEEEGGG-TSSSTTBHHHHHHHHHHHHHHH
T ss_pred eEEecchhh-ccCCCCChhHHHHHHHHHHHHH
Confidence 788999888 6788899999999999866554
No 12
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=36.87 E-value=11 Score=29.09 Aligned_cols=13 Identities=46% Similarity=0.480 Sum_probs=0.0
Q ss_pred CcccCCCCCcCCH
Q psy158 57 KKFPYNSGSELTE 69 (116)
Q Consensus 57 ~~~~~nd~sELte 69 (116)
++...+..+|-++
T Consensus 99 ~k~~~~~sse~~e 111 (154)
T PF06375_consen 99 KKRHYSESSESDE 111 (154)
T ss_dssp -------------
T ss_pred CCCCCCCCCcccc
Confidence 3334444444333
No 13
>PF09998 DUF2239: Uncharacterized protein conserved in bacteria (DUF2239); InterPro: IPR018715 This family of uncharacterised bacterial proteins has no known function.
Probab=32.75 E-value=64 Score=26.09 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=24.1
Q ss_pred CHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCcc
Q psy158 68 TEEFLLEELHPKKTAERPKFDKPKGPPNRGAKRI 101 (116)
Q Consensus 68 tee~l~eel~P~~~~~k~~FaKPkgP~rRg~~r~ 101 (116)
|++.+++.+.|..+.....-.-|..|.+|||.+|
T Consensus 54 ~~~ev~~R~~~~~~~~~~~~~~~~~prgrGRPKL 87 (187)
T PF09998_consen 54 SDAEVLARLAPAAPPAAAAEAEAAAPRGRGRPKL 87 (187)
T ss_pred CHHHHHHhhccCCcccccccccCCCCCCCCCCcc
Confidence 5678888888766554444467777777888876
No 14
>PRK12747 short chain dehydrogenase; Provisional
Probab=32.61 E-value=38 Score=24.88 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=21.7
Q ss_pred EEEEEecCCCCCCcccchhhhhccHHHHH
Q psy158 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLE 30 (116)
Q Consensus 2 ~vFIys~P~~s~pIKeRMlYSS~K~~l~~ 30 (116)
+|||.|+.+ ..+....-.|++||+++..
T Consensus 140 iv~isS~~~-~~~~~~~~~Y~~sKaa~~~ 167 (252)
T PRK12747 140 IINISSAAT-RISLPDFIAYSMTKGAINT 167 (252)
T ss_pred EEEECCccc-ccCCCCchhHHHHHHHHHH
Confidence 788888877 4566667789999998753
No 15
>PF07981 Plasmod_MYXSPDY: Plasmodium repeat_MYXSPDY; InterPro: IPR012598 This repeat is found in two hypothetical Plasmodium proteins.
Probab=29.60 E-value=14 Score=19.65 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=7.8
Q ss_pred EEecCCCCCCc
Q psy158 5 IYSMPGYSLPI 15 (116)
Q Consensus 5 Iys~P~~s~pI 15 (116)
+|+.|||+++.
T Consensus 1 mY~SPdytL~~ 11 (17)
T PF07981_consen 1 MYFSPDYTLRL 11 (17)
T ss_pred CccCCCceEEE
Confidence 47889887653
No 16
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.34 E-value=60 Score=24.54 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=21.3
Q ss_pred EEEEEecCCCCCCcccchhhhhccHHHHHH
Q psy158 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLEN 31 (116)
Q Consensus 2 ~vFIys~P~~s~pIKeRMlYSS~K~~l~~~ 31 (116)
+|||-|+-+ ..+...-..|++||+++..-
T Consensus 143 Iv~isS~~~-~~~~~~~~~Y~asKaal~~l 171 (257)
T PRK08594 143 IVTLTYLGG-ERVVQNYNVMGVAKASLEAS 171 (257)
T ss_pred EEEEcccCC-ccCCCCCchhHHHHHHHHHH
Confidence 678887766 45556667899999987543
No 17
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=27.30 E-value=77 Score=22.85 Aligned_cols=10 Identities=40% Similarity=0.826 Sum_probs=8.4
Q ss_pred CEEEEEecCC
Q psy158 1 MFVFIYSMPG 10 (116)
Q Consensus 1 k~vFIys~P~ 10 (116)
|.|.||..|.
T Consensus 1 ~~itiy~~p~ 10 (117)
T COG1393 1 MMITIYGNPN 10 (117)
T ss_pred CeEEEEeCCC
Confidence 4688999998
No 18
>PRK07578 short chain dehydrogenase; Provisional
Probab=24.92 E-value=77 Score=22.54 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=21.7
Q ss_pred EEEEEecCCCCCCcccchhhhhccHHHHHHh
Q psy158 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENL 32 (116)
Q Consensus 2 ~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l 32 (116)
+++|.++.+ ..+......|+++|+++..-.
T Consensus 107 iv~iss~~~-~~~~~~~~~Y~~sK~a~~~~~ 136 (199)
T PRK07578 107 FTLTSGILS-DEPIPGGASAATVNGALEGFV 136 (199)
T ss_pred EEEEccccc-CCCCCCchHHHHHHHHHHHHH
Confidence 567777666 456667889999999875433
No 19
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.83 E-value=89 Score=23.58 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=19.4
Q ss_pred EEEEEecCCCCCCcccchhhhhccHHHHH
Q psy158 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLE 30 (116)
Q Consensus 2 ~vFIys~P~~s~pIKeRMlYSS~K~~l~~ 30 (116)
+|+|.|+-+ ..+......|++||+++..
T Consensus 142 Iv~isS~~~-~~~~~~~~~Y~asKaal~~ 169 (260)
T PRK06603 142 IVTLTYYGA-EKVIPNYNVMGVAKAALEA 169 (260)
T ss_pred EEEEecCcc-ccCCCcccchhhHHHHHHH
Confidence 677777544 3344556789999998754
No 20
>PF11433 DUF3198: Protein of unknown function (DUF3198); InterPro: IPR024504 This domain is found at the C-terminal of a family of archaeal proteins annotated as membrane proteins.; PDB: 1X9B_A.
Probab=22.65 E-value=48 Score=21.93 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=14.0
Q ss_pred cchhhhhccHHHHHHhhh
Q psy158 17 ERMLYSSCKAPLLENLHH 34 (116)
Q Consensus 17 eRMlYSS~K~~l~~~l~~ 34 (116)
++||-|+||.-++++|..
T Consensus 8 e~~InS~SK~~Fv~nL~E 25 (51)
T PF11433_consen 8 ESYINSESKSVFVRNLTE 25 (51)
T ss_dssp HHHHHS--HHHHHHHHHH
T ss_pred HHHhCCccHHHHHHhHHH
Confidence 689999999999999875
No 21
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=21.86 E-value=44 Score=27.97 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=12.1
Q ss_pred cCcccCCCC--CcCCHHHHHHH
Q psy158 56 KKKFPYNSG--SELTEEFLLEE 75 (116)
Q Consensus 56 ~~~~~~nd~--sELtee~l~ee 75 (116)
.++...... ++.++|||-++
T Consensus 238 ~~~VE~GT~~~~~~D~eWIp~~ 259 (285)
T PF03896_consen 238 AKKVETGTSSTNDVDEEWIPKE 259 (285)
T ss_pred CCcccCCCCCCCCCCcccCCHH
Confidence 444444443 48888998543
No 22
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=20.49 E-value=31 Score=24.34 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=18.4
Q ss_pred CCcCCHHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy158 64 GSELTEEFLLEELHPKKTAERPKFDKPKGPP 94 (116)
Q Consensus 64 ~sELtee~l~eel~P~~~~~k~~FaKPkgP~ 94 (116)
+++++||.|.+.|. -.|.||+.-|
T Consensus 61 p~~l~ee~l~D~Le-------IhFqK~snGG 84 (88)
T PF07292_consen 61 PDVLDEEELRDKLE-------IHFQKPSNGG 84 (88)
T ss_pred CCCCChhhheeeEE-------EEEecCCCCC
Confidence 44799999998776 6788887644
No 23
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.27 E-value=83 Score=23.22 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=19.0
Q ss_pred EEEEEecCCCCCCcccchhhhhccHHHHH
Q psy158 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLE 30 (116)
Q Consensus 2 ~vFIys~P~~s~pIKeRMlYSS~K~~l~~ 30 (116)
+|||.|.-++..+......|++||+++..
T Consensus 133 iv~isS~~~~~~~~~~~~~Y~asKaa~~~ 161 (255)
T PRK06463 133 IVNIASNAGIGTAAEGTTFYAITKAGIII 161 (255)
T ss_pred EEEEcCHHhCCCCCCCccHhHHHHHHHHH
Confidence 57777665432334456779999998743
Done!