Query psy158
Match_columns 116
No_of_seqs 107 out of 366
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 21:39:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3daw_B Twinfilin-1, protein A6 99.8 1E-21 3.5E-26 145.5 5.7 68 2-85 95-163 (164)
2 2w0i_A Twinfilin-2; cytoskelet 99.8 3.9E-21 1.3E-25 136.0 3.7 61 1-77 74-135 (135)
3 2d8b_A Twinfilin-1; cell-free 99.8 5.4E-21 1.9E-25 140.7 4.6 66 1-82 99-165 (166)
4 2i2q_A Cofilin; N-terminal ser 99.7 3.7E-18 1.3E-22 119.8 1.5 58 1-79 80-137 (137)
5 1cnu_A Actophorin, ADF, cofili 99.7 1.6E-17 5.4E-22 116.3 4.2 57 1-78 78-134 (137)
6 1vkk_A GMF-gamma, GLIA maturat 99.7 1.5E-17 5E-22 121.4 3.9 55 1-77 97-151 (154)
7 1v6f_A MGMF-beta, GLIA maturat 99.7 1.5E-17 5.2E-22 120.0 3.7 56 1-78 91-146 (151)
8 2lj8_A Cofilin/actin depolymer 99.7 3.9E-17 1.3E-21 117.3 3.5 55 1-77 87-141 (144)
9 3q2b_A Pfadf1, cofilin/actin-d 99.6 3.6E-17 1.2E-21 115.7 0.7 49 1-69 74-122 (124)
10 2kd5_A ADF H, actin severing a 99.6 4.8E-17 1.7E-21 116.0 1.3 59 1-81 80-138 (144)
11 1hqz_1 ABP1P, actin-binding pr 99.6 1.1E-16 3.7E-21 113.1 2.9 58 1-79 80-138 (141)
12 2kvk_A Actin severing and dyna 99.6 1.2E-16 4E-21 114.6 3.1 56 1-78 80-135 (144)
13 1m4j_A A6 gene product, twinfi 99.6 7.8E-17 2.7E-21 114.5 2.1 59 1-78 82-140 (142)
14 2l72_A Tgadf, actin depolymeri 99.6 1E-16 3.5E-21 115.9 2.1 50 1-70 89-138 (139)
15 1cfy_A Cofilin; actin-binding, 99.6 2.1E-16 7.2E-21 111.5 3.4 57 1-78 82-138 (143)
16 2xfa_A Actin depolymerization 99.6 1.6E-16 5.3E-21 113.3 2.6 56 1-78 91-146 (148)
17 1f7s_A Actin depolymerizing fa 99.6 1.7E-16 6E-21 112.0 1.7 55 1-76 84-138 (139)
18 1ak6_A Destrin; actin depolyme 99.6 4.1E-16 1.4E-20 115.4 3.4 60 1-81 107-166 (174)
19 1tvj_A Cofilin; ADF, actin bin 99.6 6.1E-16 2.1E-20 113.5 3.6 59 1-80 98-157 (166)
20 2vac_A Twinfilin-2; transferas 99.6 2.9E-16 9.8E-21 110.6 1.8 55 1-74 79-133 (134)
21 1x67_A Drebrin-like protein; c 99.4 1.4E-13 4.7E-18 98.8 3.8 56 1-77 85-140 (146)
22 1t3y_A Coactosin-like protein; 99.2 1.7E-12 5.8E-17 93.0 1.8 57 1-78 74-130 (141)
23 2eo2_A Adult MALE hypothalamus 34.3 33 0.0011 23.0 3.0 14 61-74 44-57 (71)
24 4fs3_A Enoyl-[acyl-carrier-pro 24.2 37 0.0013 24.7 1.9 27 2-29 142-168 (256)
25 3rkr_A Short chain oxidoreduct 22.3 52 0.0018 23.5 2.4 28 2-30 161-188 (262)
26 1x9b_A Hypothetical membrane p 21.8 33 0.0011 21.9 1.1 18 17-34 10-27 (53)
27 2m1z_A LMO0427 protein; homolo 20.4 87 0.003 21.5 3.2 49 1-74 4-57 (106)
28 1r8s_E ARNO; protein transport 20.3 81 0.0028 23.9 3.2 14 61-74 171-184 (203)
No 1
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A
Probab=99.84 E-value=1e-21 Score=145.45 Aligned_cols=68 Identities=53% Similarity=0.986 Sum_probs=59.6
Q ss_pred EEEEEecCCCCCCcccchhhhhccHHHHHHhhh-cCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCCCC
Q psy158 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHH-LGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHPKK 80 (116)
Q Consensus 2 ~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~-~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P~~ 80 (116)
+|||||||+++++||+||||||||++|++.|.. .||+|.++|| ++|++|||+++|.++|||++
T Consensus 95 ~ifi~~~P~~~a~ik~kMlYASsK~~l~~~l~~~~Gi~i~k~ie----------------a~d~~Elt~e~l~ekl~p~~ 158 (164)
T 3daw_B 95 VVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIE----------------IDNGDELTADFLYDEVHPKQ 158 (164)
T ss_dssp EEEEEECCSTTSCHHHHHHHHHTHHHHHHHHHHHHCCCEEEEEE----------------ESSSSSCCHHHHHHHHSCC-
T ss_pred EEEEEEcCCCCCCHHHHHHHHHhHHHHHHHHhhccCCceeEEEE----------------eCChHHcCHHHHHhHhCCcc
Confidence 799999999899999999999999999999975 6999999999 99999999999999999999
Q ss_pred CCCCC
Q psy158 81 TAERP 85 (116)
Q Consensus 81 ~~~k~ 85 (116)
.+.++
T Consensus 159 ~~~~~ 163 (164)
T 3daw_B 159 HAHKQ 163 (164)
T ss_dssp -----
T ss_pred cccCC
Confidence 87665
No 2
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Probab=99.82 E-value=3.9e-21 Score=136.00 Aligned_cols=61 Identities=57% Similarity=0.954 Sum_probs=58.2
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhh-hcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLH-HLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELH 77 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~-~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~ 77 (116)
++|||||||+|+++||+||||||||++|++.|. ++|+.|.+++| ++|++||++++|.++||
T Consensus 74 k~vfI~w~P~~~~~vk~kMlYassk~~l~~~l~~~~Gi~v~~~ie----------------a~d~~el~~~~i~~kl~ 135 (135)
T 2w0i_A 74 SVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIE----------------IGDGAELTAEFLDDEVH 135 (135)
T ss_dssp EEEEEEECCGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE----------------ESCGGGCCHHHHHHHHC
T ss_pred cEEEEEECCCCCCCHHHHhHhHHhHHHHHHHHhhccCCceeEEEE----------------cCChhhcCHHHHHHhhC
Confidence 589999999989999999999999999999998 58999889999 99999999999999987
No 3
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus}
Probab=99.82 E-value=5.4e-21 Score=140.70 Aligned_cols=66 Identities=50% Similarity=0.932 Sum_probs=61.9
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhh-hcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLH-HLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHPK 79 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~-~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P~ 79 (116)
++|||||||+|+++||+||||||||++|++.|. .+|++|.++|| ++|++||++++|.++|+|+
T Consensus 99 k~vFI~w~P~~~~~ik~KMlYAssk~~l~~~l~~~~Gi~v~~~ie----------------a~d~~El~~~~i~~kl~p~ 162 (166)
T 2d8b_A 99 SVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIE----------------IDNGDELTADFLYDEVHSG 162 (166)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHTTHHHHHHHTTSSCCCCSEEEE----------------ESSSTTCCHHHHHHHHHTC
T ss_pred cEEEEEECCCCCCCHHHeeehhhhHHHHHHHHhhccCCceeEEEE----------------eCChHHCCHHHHHHHhCCC
Confidence 589999999999999999999999999999998 58998899999 9999999999999999998
Q ss_pred CCC
Q psy158 80 KTA 82 (116)
Q Consensus 80 ~~~ 82 (116)
+..
T Consensus 163 ~~~ 165 (166)
T 2d8b_A 163 PSS 165 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 4
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe}
Probab=99.69 E-value=3.7e-18 Score=119.84 Aligned_cols=58 Identities=33% Similarity=0.487 Sum_probs=40.4
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHPK 79 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P~ 79 (116)
++|||||||+ ++||++||||||||+.|.+.|. |+ ..+++ ++|++|||+++|.++|+++
T Consensus 80 k~vfI~w~Pd-~a~vk~KMlyassk~~l~~~l~--g~--~~~i~----------------a~d~~el~~~~i~~kl~~k 137 (137)
T 2i2q_A 80 KIIFISWSPD-VAPIKSKMVYSSSKDTLRRAFT--GI--GTDIQ----------------ATDFSEVAYETVLEKVTRK 137 (137)
T ss_dssp EEEEEEECCT-TSCHHHHHHHHHHHHHHHTTCC--CC--CEEEE----------------ECCCC--------------
T ss_pred CEEEEEECCC-CCChhHhhhhHHHHHHHHHHhc--Cc--eEEEE----------------ECChHHcCHHHHHHHhcCC
Confidence 5899999999 9999999999999999999997 65 44799 9999999999999999863
No 5
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Probab=99.68 E-value=1.6e-17 Score=116.33 Aligned_cols=57 Identities=28% Similarity=0.510 Sum_probs=52.6
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHP 78 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P 78 (116)
++|||||||+ ++||++||||||||++|.+.|+ |+ ..+++ ++|.+|||+++|.++|+.
T Consensus 78 k~vfI~w~Pd-~a~v~~Kmlyassk~~l~~~l~--g~--~~~i~----------------a~~~~el~~~~i~~kl~~ 134 (137)
T 1cnu_A 78 KITFILWAPD-SAPIKSKMMYTSTKDSIKKKLV--GI--QVEVQ----------------ATDAAEISEDAVSERAKK 134 (137)
T ss_dssp EEEEEEECCT-TSCHHHHHHHHHHHHHHHHHST--TC--CEEEE----------------ECSTTTTSHHHHHHHHTC
T ss_pred CEEEEEECCC-CCChHHheehHHhHHHHHHHhc--Cc--eEEEE----------------ECChHHCCHHHHHHHHhc
Confidence 5899999999 9999999999999999999997 65 44799 999999999999999985
No 6
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A
Probab=99.68 E-value=1.5e-17 Score=121.40 Aligned_cols=55 Identities=27% Similarity=0.483 Sum_probs=51.0
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELH 77 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~ 77 (116)
++|||||||+ +++|++||||||||++|.+.| | |.+.|| ++|++||++++|.++|.
T Consensus 97 klvFI~w~P~-~a~vk~KMlYAssk~~l~~~l---g--i~~~ie----------------a~d~~El~~e~i~~kl~ 151 (154)
T 1vkk_A 97 PLCFIFSSPV-GCKPEQQMMYAGSKNRLVQTA---E--LTKVFE----------------IRTTDDLTETWLKEKLA 151 (154)
T ss_dssp CEEEEEECCT-TSCHHHHHHHHHHHHHHHHHT---T--CCCEEE----------------ESSGGGCCHHHHHHHHH
T ss_pred cEEEEEECCC-CCChhhhhhhHhhHHHHHHhh---C--ceEEEE----------------ECChHhCCHHHHHHHHh
Confidence 6899999999 999999999999999999998 5 467899 99999999999999874
No 7
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Probab=99.68 E-value=1.5e-17 Score=119.98 Aligned_cols=56 Identities=29% Similarity=0.491 Sum_probs=52.0
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHP 78 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P 78 (116)
++|||||||+ +++|++||||||||+.|++.| | |.+.|| ++|++||++++|.++|+.
T Consensus 91 k~vfI~w~P~-~a~vk~KMlYAssk~~l~~~l---g--i~~~ie----------------a~d~~El~~~~i~~kl~~ 146 (151)
T 1v6f_A 91 PLCFIFSSPV-GCKPEQQMMYAGSKNKLVQTA---E--LTKVFE----------------IRNTEDLTEEWLREKLGS 146 (151)
T ss_dssp CEEEEEECCT-TSCHHHHHHHHHHHHHHHHHT---T--CSEEEE----------------ESSGGGCCHHHHHHHHHS
T ss_pred cEEEEEECCC-CCChHHheehHHHHHHHHHHh---C--CeEEEE----------------ECChHHCCHHHHHHHHcc
Confidence 6899999999 999999999999999999998 5 467899 999999999999999984
No 8
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei}
Probab=99.65 E-value=3.9e-17 Score=117.30 Aligned_cols=55 Identities=25% Similarity=0.353 Sum_probs=50.6
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELH 77 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~ 77 (116)
++|||||||+ ++|||+||||||||++|.+.|. |+ +.|| ++|.+|||+++|+++|.
T Consensus 87 k~vfI~w~Pd-~a~vk~KMlYASsk~~l~~~l~--~~---~~i~----------------a~d~~el~~e~i~~kl~ 141 (144)
T 2lj8_A 87 KLILISWNPD-SGAPRTKMLYSSSRDALVPLTQ--GF---QGIQ----------------ANDASGLDFEEISRKVK 141 (144)
T ss_dssp EEEEEEECCT-TSCHHHHHHHHHHHHHHHHHTT--TS---EEEE----------------CCGGGTSCHHHHHHHHH
T ss_pred cEEEEEEcCC-CCCHHHHHHHHHHHHHHHHHhC--Ce---eEEE----------------eCChHHCCHHHHHHHHh
Confidence 5899999999 9999999999999999999998 54 4699 99999999999999875
No 9
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A
Probab=99.62 E-value=3.6e-17 Score=115.72 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=45.0
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCH
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTE 69 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELte 69 (116)
++|||||||+ ++|||+||||||||++|++.|. |+.+ ++++ ++|++|||+
T Consensus 74 k~vfI~w~Pd-~a~vk~KMlYASsk~~l~~~l~--g~~~-~~i~----------------a~d~~dlt~ 122 (124)
T 3q2b_A 74 KIHFFMYARE-SSNSRDRMTYASSKQAILKKIE--GVNV-LTSV----------------IESAQDVAD 122 (124)
T ss_dssp CEEEEEEECT-TSCHHHHHHHHHHHHHHHTTST--TSEE-CCSC----------------BCSHHHHTT
T ss_pred CEEEEEECCC-CCChhHhhhhHHHHHHHHHHhC--CCce-EEEE----------------ecCHHHccc
Confidence 5899999999 9999999999999999999998 7765 6899 999999975
No 10
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin, solution structure, hormone; NMR {Leishmania donovani} PDB: 2kvk_A
Probab=99.62 E-value=4.8e-17 Score=116.03 Aligned_cols=59 Identities=20% Similarity=0.377 Sum_probs=53.9
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCCCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHPKK 80 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P~~ 80 (116)
++|||||||+ ++||++||+|||+|+.|.+.|. |+ ..|+ ++|++||+++.|.++|++..
T Consensus 80 k~vfI~w~Pd-~a~vk~KMlyAssk~~l~~~l~--g~---~~i~----------------a~d~~el~~~~i~~kl~~~r 137 (144)
T 2kd5_A 80 KLILIQWIPD-TARPREKMMYSASRDALSSVSE--GY---LPIQ----------------ANDESGLDAEEIIRKVRLHR 137 (144)
T ss_dssp EEEEEEECCC-CSCSHHHHHHHHHGGGGTTTTC--CS---EEEE----------------ESSSSSSSHHHHHHHHHHTT
T ss_pred CEEEEEECCC-CCCHHHHhhhHHHHHHHHHHhC--Ce---EEEE----------------ECChHHCCHHHHHHHHhhhh
Confidence 5899999999 9999999999999999999998 64 6899 99999999999999998654
Q ss_pred C
Q psy158 81 T 81 (116)
Q Consensus 81 ~ 81 (116)
+
T Consensus 138 ~ 138 (144)
T 2kd5_A 138 S 138 (144)
T ss_dssp C
T ss_pred h
Confidence 3
No 11
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2
Probab=99.62 E-value=1.1e-16 Score=113.08 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=52.1
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHH-HhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLE-NLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHPK 79 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~-~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P~ 79 (116)
++|||||||+ ++|||+||+|||||+.|.+ .|+ |+.+ .|+ ++|.+|||++.|.++++..
T Consensus 80 k~vfI~w~Pd-~~~vk~Kmlyas~k~~l~~~~l~--g~~~--~i~----------------a~~~~el~~e~i~~kl~~a 138 (141)
T 1hqz_1 80 KIIIIGWCPD-SAPLKTRASFAANFAAVANNLFK--GYHV--QVT----------------ARDEDDLDENELLMKISNA 138 (141)
T ss_dssp EEEEEEECCT-TSCHHHHHHHHHHHHHHHHHTSC--SCSE--EEE----------------ESSGGGGCHHHHHHHHHTC
T ss_pred eEEEEEECCC-CCChhheEEEeccHHHHHHHhCC--ceEE--EEE----------------ECChHHCCHHHHHHHHHhc
Confidence 5899999999 8999999999999999997 887 6544 689 9999999999999999753
No 12
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani}
Probab=99.62 E-value=1.2e-16 Score=114.57 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=50.9
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHP 78 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P 78 (116)
++|||||||+ ++|||+||||||||++|.+.|+ |. ..+| ++|.+||++++|+++|..
T Consensus 80 k~vfI~w~Pd-~a~vk~KMlyassk~~lk~~l~--~~---~~i~----------------a~d~~el~~e~i~~kl~~ 135 (144)
T 2kvk_A 80 KLILIQWIPD-TARPREKMMYSASRDALSSVSE--GY---LPIQ----------------ANDESGLDAEEIIRKVRL 135 (144)
T ss_dssp EEEEEEECCT-TSCHHHHHHHHHHHHHHHHHCT--TE---EEEE----------------ESSGGGGCHHHHHHHHHH
T ss_pred cEEEEEECCC-CCCHHHHHHHHHHHHHHHHhcC--CE---EEEE----------------ECChHHCCHHHHHHHHhc
Confidence 5899999999 9999999999999999999997 52 4799 999999999999998853
No 13
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2
Probab=99.62 E-value=7.8e-17 Score=114.47 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=53.6
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHP 78 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P 78 (116)
++|||+|||+ ++||++||||||||+.|.+.|. |+.+...++ ++|.+||+++.+.+++..
T Consensus 82 k~vfI~w~Pd-~a~vr~KMlYAssk~~lk~~l~--g~~~~~~i~----------------atd~~el~~~~i~~~l~~ 140 (142)
T 1m4j_A 82 EWIFIAWSPD-HSHVRQKMLYAATRATLKKEFG--GGHIKDEVF----------------GTVKEDVSLHGYKKYLLS 140 (142)
T ss_dssp EEEEEEECCT-TSCHHHHHHHHHHHHHHHHHHC--GGGEEEEEE----------------ESSHHHHSHHHHHHHHC-
T ss_pred eEEEEEEcCC-CCCHHHHHHHHHHHHHHHHHcC--CceeEEEEE----------------eCChHHCCHHHHHHHHhc
Confidence 5899999999 9999999999999999999998 766666799 999999999999998753
No 14
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=99.61 E-value=1e-16 Score=115.91 Aligned_cols=50 Identities=32% Similarity=0.470 Sum_probs=45.5
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHH
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEE 70 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee 70 (116)
++|||||||+ ++|||+||||||||++|++.|. |+.+.+ ++ ++|++|||++
T Consensus 89 k~vFI~w~Pd-~a~vk~KMlYASsk~~lk~~l~--g~~v~~-ie----------------a~~~~DLte~ 138 (139)
T 2l72_A 89 KIQFVLWCPD-NAPVKPRMTYASSKDALLKKLD--GATAVA-LE----------------AHEMGDLAPL 138 (139)
T ss_dssp CEEEEEECCT-TSCHHHHHHHHHHHHHHHHHHC--SCCSCE-EE----------------ESSTTTTSCC
T ss_pred cEEEEEECCC-CCChhHeeehHhhHHHHHHHhC--CceEEE-EE----------------eCCHHHCccC
Confidence 6899999999 9999999999999999999998 776653 89 9999999974
No 15
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A
Probab=99.61 E-value=2.1e-16 Score=111.55 Aligned_cols=57 Identities=26% Similarity=0.457 Sum_probs=52.2
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHP 78 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P 78 (116)
++|||||||+ ++||++||+|||+|+.|.+.|+ |+.+ .|+ ++|.+||+++.|.+++..
T Consensus 82 k~vfI~w~Pd-~a~v~~KmlyAssk~~l~~~l~--g~~~--~i~----------------a~d~~el~~~~i~~kl~~ 138 (143)
T 1cfy_A 82 KIVFFTWSPD-TAPVRSKMVYASSKDALRRALN--GVST--DVQ----------------GTDFSEVSYDSVLERVSR 138 (143)
T ss_dssp EEEEEEECCT-TSCHHHHHHHHHHHHHHHHHCT--TCCE--EEE----------------ESSGGGGSHHHHHHHHHC
T ss_pred CEEEEEECCC-CCChhheeehHhhHHHHHHhcC--CceE--EEE----------------eCChHHCCHHHHHHHHhh
Confidence 5899999999 9999999999999999999997 6544 689 999999999999999875
No 16
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei}
Probab=99.61 E-value=1.6e-16 Score=113.31 Aligned_cols=56 Identities=27% Similarity=0.361 Sum_probs=50.7
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHP 78 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P 78 (116)
++|||||||+ ++||++||||||||+.|.+.|. |+.+ .++ ++| +||+++.|+++++.
T Consensus 91 k~vfI~w~Pd-~a~vr~KMlYAssk~~lk~~l~--g~~~--~i~----------------atd-~el~~~~i~~k~~~ 146 (148)
T 2xfa_A 91 RIYFIFWSPG-LSKPKEKMLYAASKESLVRKIN--GIFK--SLE----------------ITC-DINEFEEELKAIIL 146 (148)
T ss_dssp EEEEEEECCT-TSCHHHHHHHHHHHHHHHTTCT--TCSE--EEE----------------ECS-CGGGHHHHHHHHHH
T ss_pred CEEEEEECCC-CCChHHHhHhHHHHHHHHHHhc--CCeE--EEE----------------EEc-ccCCHHHHHHHhhc
Confidence 5899999999 9999999999999999999997 7644 799 999 99999999998753
No 17
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2
Probab=99.59 E-value=1.7e-16 Score=112.04 Aligned_cols=55 Identities=20% Similarity=0.404 Sum_probs=41.4
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHh
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEEL 76 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel 76 (116)
++|||||||+ ++||++||||||+|+.|.+.|+ |+.+ .|+ ++|.+||+++.|.+++
T Consensus 84 k~vfI~w~P~-~a~v~~KmlyAssk~~l~~~l~--g~~v--~i~----------------a~d~~el~~~~i~~~~ 138 (139)
T 1f7s_A 84 KIFFIAWCPD-IAKVRSKMIYASSKDRFKRELD--GIQV--ELQ----------------ATDPTEMDLDVFRSRA 138 (139)
T ss_dssp EEEEEEECCT-TSCHHHHHHHHHHHHHHHTTCT--TCCE--EEE----------------ECCTTC----------
T ss_pred CEEEEEECCC-CCChhHheehHHhHHHHHHhcC--CeEE--EEE----------------ECChHHCCHHHHHHhh
Confidence 5899999999 9999999999999999999998 6544 689 9999999999998876
No 18
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M
Probab=99.59 E-value=4.1e-16 Score=115.43 Aligned_cols=60 Identities=22% Similarity=0.428 Sum_probs=54.3
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCCCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHPKK 80 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P~~ 80 (116)
++|||||||+ ++|||+||||||||+.|.+.|. |+ ...++ ++|.+||++++|.++|....
T Consensus 107 klvfI~W~Pd-~a~vk~KMlYAssk~~lk~~l~--gi--~~~i~----------------atd~~El~~e~i~~kl~~~~ 165 (174)
T 1ak6_A 107 ELMFFLWAPE-LAPLKSKMIYASSKDAIKKKFQ--GI--KHECQ----------------ANGPEDLNRACIAEKLGGSL 165 (174)
T ss_dssp CCCEEEECCS-SSCHHHHHSHHHHHHHHHHHCT--TC--SCCEE----------------ESSTTTTCHHHHHHHTTTTS
T ss_pred cEEEEEECCC-CCCHHHhhHHHHHHHHHHHHhc--CC--eEEEE----------------ECChhhcCHHHHHHHhccCc
Confidence 5899999999 9999999999999999999998 64 56799 99999999999999999754
Q ss_pred C
Q psy158 81 T 81 (116)
Q Consensus 81 ~ 81 (116)
.
T Consensus 166 ~ 166 (174)
T 1ak6_A 166 I 166 (174)
T ss_dssp C
T ss_pred e
Confidence 3
No 19
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus}
Probab=99.58 E-value=6.1e-16 Score=113.51 Aligned_cols=59 Identities=27% Similarity=0.480 Sum_probs=53.5
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcC-CHHHHHHHhCCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSEL-TEEFLLEELHPK 79 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sEL-tee~l~eel~P~ 79 (116)
++|||+|||+ ++||++||||||||+.|.+.|. |+ ...++ ++|.+|| ++++|.++|...
T Consensus 98 klvfI~W~Pd-~a~vr~KMlYAssk~~lk~~l~--gi--~~~i~----------------atd~~el~~~~~i~ekl~~~ 156 (166)
T 1tvj_A 98 DLVFIFWAPE-SAPLKSKMIYASSKDAIKKKFT--GI--KHEWQ----------------VNGLDDIKDRSTLGEKLGGN 156 (166)
T ss_dssp EEEEEEECCT-TSCHHHHHHHHHHHHHHHHTTT--TC--CCEEE----------------ESSGGGTCCHHHHHHHHTCT
T ss_pred CEEEEEECCC-CCCHHHhhHHHHhHHHHHHHhc--CC--eEEEE----------------ECChHHcCCHHHHHHHhCCC
Confidence 5899999999 9999999999999999999998 64 44789 9999999 999999999864
Q ss_pred C
Q psy158 80 K 80 (116)
Q Consensus 80 ~ 80 (116)
.
T Consensus 157 ~ 157 (166)
T 1tvj_A 157 V 157 (166)
T ss_dssp T
T ss_pred c
Confidence 3
No 20
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens}
Probab=99.58 E-value=2.9e-16 Score=110.62 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=50.1
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHH
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLE 74 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~e 74 (116)
++|||+|||+ ++|||+||||||||+.|.+.|. |+.+...++ ++|.+||+++.+..
T Consensus 79 k~vfI~w~Pd-~a~vr~KMlYAssk~~lk~~l~--g~~~~~~i~----------------atd~~el~~~~~~~ 133 (134)
T 2vac_A 79 EWLFLAWSPD-NSPVRLKMLYAATRATVKKEFG--GGHIKDELF----------------GTVKDDLSFAGYQK 133 (134)
T ss_dssp EEEEEEECCT-TSCHHHHHHHHHHHHHHHHHHC--GGGEEEEEE----------------ESSHHHHSHHHHHH
T ss_pred eEEEEEEcCC-CCCHHHHhHHHHHHHHHHHHcC--CCeeeEEEE----------------eCChHHcCHHHHhc
Confidence 5899999999 9999999999999999999998 766666799 99999999998764
No 21
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-13 Score=98.76 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=51.8
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELH 77 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~ 77 (116)
|+|||.|||+ ++|+++||+|||+++.|.+.|+ |+.+ .|+ ++|.+||+++.|.+++.
T Consensus 85 K~vfI~W~pd-~a~v~~Km~yas~k~~lk~~l~--g~~~--ei~----------------at~~~el~~~~i~~k~~ 140 (146)
T 1x67_A 85 KFVLINWTGE-GVNDVRKGACASHVSTMASFLK--GAHV--TIN----------------ARAEEDVEPECIMEKVA 140 (146)
T ss_dssp EEEEEEEECT-TSCHHHHHHHHHHHHHHHHHTT--TEEE--EEC----------------CCSGGGGCHHHHHHHHH
T ss_pred eEEEEEECCC-CCChhheeeehhhHHHHHHhcC--CcEE--EEE----------------eCChHHCCHHHHHHHHH
Confidence 6899999999 9999999999999999999998 6654 689 99999999999999875
No 22
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A
Probab=99.24 E-value=1.7e-12 Score=93.00 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=52.1
Q ss_pred CEEEEEecCCCCCCcccchhhhhccHHHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCCCcCCHHHHHHHhCC
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHP 78 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~sELtee~l~eel~P 78 (116)
|+|||.|||+ ++|++.||+|||+++.|.+.|+ |+.+ .|+ ++|.+||+++.|.+++..
T Consensus 74 K~vfI~W~pd-~~~~~~K~~~as~k~~vk~~l~--g~~~--~i~----------------a~d~~el~~~~I~~kv~~ 130 (141)
T 1t3y_A 74 KFALITWIGE-NVSGLQRAKTGTDKTLVKEVVQ--NFAK--EFV----------------ISDRKELEEDFIKSELKK 130 (141)
T ss_dssp EEEEEEEECT-TSCHHHHHHHHHHHHHHTTTSC--CCSE--EEE----------------ECSGGGGSHHHHHHHHHH
T ss_pred eEEEEEECCC-CCCHHHhhhHHHHHHHHHHHhc--ccEE--EEE----------------eCChHHCCHHHHHHHHHh
Confidence 6899999999 9999999999999999999998 6544 589 999999999999998874
No 23
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.31 E-value=33 Score=22.97 Aligned_cols=14 Identities=36% Similarity=0.240 Sum_probs=11.8
Q ss_pred CCCCCcCCHHHHHH
Q psy158 61 YNSGSELTEEFLLE 74 (116)
Q Consensus 61 ~nd~sELtee~l~e 74 (116)
-+||++||+|.+..
T Consensus 44 ktdP~~LT~eEi~~ 57 (71)
T 2eo2_A 44 KTDPSTLTEEEVRK 57 (71)
T ss_dssp CCSTTTCCHHHHHH
T ss_pred CCCcccCCHHHHhh
Confidence 57899999998765
No 24
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=24.18 E-value=37 Score=24.69 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=21.5
Q ss_pred EEEEEecCCCCCCcccchhhhhccHHHH
Q psy158 2 FVFIYSMPGYSLPIKERMLYSSCKAPLL 29 (116)
Q Consensus 2 ~vFIys~P~~s~pIKeRMlYSS~K~~l~ 29 (116)
+|+|.|+-+ ..+.-....|++||++|.
T Consensus 142 IVnisS~~~-~~~~~~~~~Y~asKaal~ 168 (256)
T 4fs3_A 142 IVATTYLGG-EFAVQNYNVMGVAKASLE 168 (256)
T ss_dssp EEEEECGGG-TSCCTTTHHHHHHHHHHH
T ss_pred EEEEecccc-ccCcccchhhHHHHHHHH
Confidence 678888766 566677889999999874
No 25
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=22.30 E-value=52 Score=23.50 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=21.3
Q ss_pred EEEEEecCCCCCCcccchhhhhccHHHHH
Q psy158 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLE 30 (116)
Q Consensus 2 ~vFIys~P~~s~pIKeRMlYSS~K~~l~~ 30 (116)
||||.|+-+ ..+......|+++|+.+..
T Consensus 161 iv~isS~~~-~~~~~~~~~Y~asKaa~~~ 188 (262)
T 3rkr_A 161 IINISSLAG-KNPVADGAAYTASKWGLNG 188 (262)
T ss_dssp EEEECSSCS-SCCCTTCHHHHHHHHHHHH
T ss_pred EEEEechhh-cCCCCCCchHHHHHHHHHH
Confidence 677777766 4667778899999987643
No 26
>1x9b_A Hypothetical membrane protein TA0354_69_121; alpha protein, structural genomics, protein structure initiative, PSI; NMR {Thermoplasma acidophilum} SCOP: a.10.2.1
Probab=21.84 E-value=33 Score=21.91 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=16.0
Q ss_pred cchhhhhccHHHHHHhhh
Q psy158 17 ERMLYSSCKAPLLENLHH 34 (116)
Q Consensus 17 eRMlYSS~K~~l~~~l~~ 34 (116)
++||-|+||.-++++|..
T Consensus 10 e~~InS~SK~~Fv~nL~E 27 (53)
T 1x9b_A 10 ESMINSPSKSVFVRNLNE 27 (53)
T ss_dssp HHHHHSCCHHHHHHHHHH
T ss_pred HHHhCCccHHHHHHhHHH
Confidence 679999999999999875
No 27
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=20.41 E-value=87 Score=21.54 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=30.6
Q ss_pred CEEEEEecCCCCCCcccchhhhhccH-HHHHHhhhcCceeeehhhhchhhHhhhhhcCcccCCCC----CcCCHHHHHH
Q psy158 1 MFVFIYSMPGYSLPIKERMLYSSCKA-PLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSG----SELTEEFLLE 74 (116)
Q Consensus 1 k~vFIys~P~~s~pIKeRMlYSS~K~-~l~~~l~~~Gl~i~kkle~~~~~~~~~~~~~~~~~nd~----sELtee~l~e 74 (116)
+++-|-.||. -+-.+---+ .|.+....+|++| ++| .+.. ++||++.+.+
T Consensus 4 kivaVtaCpt-------GiAhTymAAeaLekaA~~~G~~i--kVE----------------tqgs~g~~n~Lt~~~I~~ 57 (106)
T 2m1z_A 4 KIIAVTACAT-------GVAHTYMAAQALKKGAKKMGNLI--KVE----------------TQGATGIENELTEKDVNI 57 (106)
T ss_dssp EEEEEEECSS-------CHHHHHHHHHHHHHHHHHHTCEE--EEE----------------EEETTEESSCCCHHHHHH
T ss_pred cEEEEEECCC-------cHHHHHHHHHHHHHHHHHCCCEE--EEE----------------EecCccccCCCCHHHHhh
Confidence 3677888998 233333322 4555556689887 455 3332 6899888864
No 28
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=20.32 E-value=81 Score=23.85 Aligned_cols=14 Identities=43% Similarity=0.691 Sum_probs=10.7
Q ss_pred CCCCCcCCHHHHHH
Q psy158 61 YNSGSELTEEFLLE 74 (116)
Q Consensus 61 ~nd~sELtee~l~e 74 (116)
+|++.++.+++|.+
T Consensus 171 in~g~d~p~e~L~~ 184 (203)
T 1r8s_E 171 INEGGDLPEELLRN 184 (203)
T ss_dssp TBTTBCCCHHHHHH
T ss_pred ccCCCCCCHHHHHH
Confidence 67788999887654
Done!