RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy158
(116 letters)
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding
proteins, cytoskeleton, structural protein/contractIle
protein complex; HET: ATP; 2.55A {Mus musculus} PDB:
2hd7_A
Length = 164
Score = 68.1 bits (166), Expect = 9e-16
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 17/84 (20%)
Query: 3 VFIYSMPGYSLPIKERMLYSSCKAPLLENL-HHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
VFIYSMPGY+ I+ERMLYSSCK+PLLE + L + + +K++
Sbjct: 96 VFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIE----------------I 139
Query: 62 NSGSELTEEFLLEELHPKKTAERP 85
++G ELT +FL +E+HPK+ A +
Sbjct: 140 DNGDELTADFLYDEVHPKQHAHKQ 163
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein,
developmental regulation, cellular remodeling,
cytoskeleton, morphology; NMR {Mus musculus}
Length = 166
Score = 67.4 bits (164), Expect = 2e-15
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 17/81 (20%)
Query: 3 VFIYSMPGYSLPIKERMLYSSCKAPLLENL-HHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
VFIYSMPGY+ I+ERMLYSSCK+PLLE + L + + +K++
Sbjct: 101 VFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIE----------------I 144
Query: 62 NSGSELTEEFLLEELHPKKTA 82
++G ELT +FL +E+H ++
Sbjct: 145 DNGDELTADFLYDEVHSGPSS 165
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding,
cofilin-like, phosphoprotein, phosphorylation,
transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Length = 135
Score = 62.3 bits (151), Expect = 6e-14
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 17/76 (22%)
Query: 3 VFIYSMPGYSLPIKERMLYSSCKAPLLENL-HHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
VFIYSMPGY IKERMLYSSCK+ LL+++ L I KK++
Sbjct: 76 VFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIE----------------I 119
Query: 62 NSGSELTEEFLLEELH 77
G+ELT EFL +E+H
Sbjct: 120 GDGAELTAEFLDDEVH 135
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin,
solution structure, hormone; NMR {Leishmania donovani}
PDB: 2kvk_A
Length = 144
Score = 48.1 bits (114), Expect = 2e-08
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 22/84 (26%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
+ I +P + +E+M+YS+ + L +
Sbjct: 81 LILIQWIPDTA-RPREKMMYSASRDAL---------------------SSVSEGYLPIQA 118
Query: 62 NSGSELTEEFLLEELHPKKTAERP 85
N S L E ++ ++ ++
Sbjct: 119 NDESGLDAEEIIRKVRLHRSVAAA 142
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein,
cytoskeleton, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Length = 151
Score = 48.1 bits (114), Expect = 3e-08
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 22/81 (27%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
FI+S P +++M+Y+ K L++ + K F
Sbjct: 92 LCFIFSSP-VGCKPEQQMMYAGSKNKLVQTA---------------------ELTKVFEI 129
Query: 62 NSGSELTEEFLLEELHPKKTA 82
+ +LTEE+L E+L ++
Sbjct: 130 RNTEDLTEEWLREKLGSGPSS 150
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN
JCSG, protein structure initiative, PSI, joint center
for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2
PDB: 1wfs_A 3l50_A
Length = 154
Score = 41.6 bits (97), Expect = 7e-06
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 22/75 (29%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
FI+S P +++M+Y+ K L++ + K F
Sbjct: 98 LCFIFSSP-VGCKPEQQMMYAGSKNRLVQTA---------------------ELTKVFEI 135
Query: 62 NSGSELTEEFLLEEL 76
+ +LTE +L E+L
Sbjct: 136 RTTDDLTETWLKEKL 150
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A
{Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Length = 137
Score = 40.7 bits (95), Expect = 1e-05
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 21/79 (26%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
FI P + PIK +M+Y+S K + + L + + +
Sbjct: 79 ITFILWAPDSA-PIKSKMMYTSTKDSIKKKLVGI--------------------QVEVQA 117
Query: 62 NSGSELTEEFLLEELHPKK 80
+E++E+ + E
Sbjct: 118 TDAAEISEDAVSERAKKDV 136
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A
{Schizosaccharomyces pombe}
Length = 137
Score = 39.9 bits (93), Expect = 2e-05
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 21/78 (26%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
+FI P + PIK +M+YSS K L +
Sbjct: 81 IIFISWSPDVA-PIKSKMVYSSSKDTLRRAFTGI--------------------GTDIQA 119
Query: 62 NSGSELTEEFLLEELHPK 79
SE+ E +LE++ K
Sbjct: 120 TDFSEVAYETVLEKVTRK 137
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR
{Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A
3j0s_M
Length = 174
Score = 34.1 bits (77), Expect = 0.004
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 21/82 (25%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
+F P + P+K +M+Y+S K + KKK + K +
Sbjct: 108 LMFFLWAPELA-PLKSKMIYASSKDAI--------------------KKKFQGIKHECQA 146
Query: 62 NSGSELTEEFLLEELHPKKTAE 83
N +L + E+L
Sbjct: 147 NGPEDLNRACIAEKLGGSLIVA 168
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A
{Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A
1qpv_A
Length = 143
Score = 33.5 bits (76), Expect = 0.006
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 21/81 (25%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
VF P + P++ +M+Y+S K L L+ +
Sbjct: 83 IVFFTWSPDTA-PVRSKMVYASSKDALRRALNGV--------------------STDVQG 121
Query: 62 NSGSELTEEFLLEELHPKKTA 82
SE++ + +LE + +
Sbjct: 122 TDFSEVSYDSVLERVSRGAGS 142
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant
protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP:
d.109.1.2
Length = 139
Score = 33.4 bits (76), Expect = 0.007
Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 21/76 (27%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
FI P + ++ +M+Y+S K L + + +
Sbjct: 85 IFFIAWCPDIA-KVRSKMIYASSKDRFKRELDGI--------------------QVELQA 123
Query: 62 NSGSELTEEFLLEELH 77
+E+ + +
Sbjct: 124 TDPTEMDLDVFRSRAN 139
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.017
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 24/98 (24%)
Query: 2 FVFIYSMPGY-----------SLPIKERMLY-------SSCKAP--LLENLHHLGLTIDK 41
V I + G S ++ +M + +C +P +LE L L ID
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 42 KLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHPK 79
+ K +S L + +
Sbjct: 212 NW----TSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein
binding; 2.10A {Plasmodium berghei}
Length = 148
Score = 28.2 bits (62), Expect = 0.42
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENL 32
FI+ PG S KE+MLY++ K L+ +
Sbjct: 92 IYFIFWSPGLS-KPKEKMLYAASKESLVRKI 121
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor,
actin-binding protein; NMR {Gallus gallus}
Length = 166
Score = 28.3 bits (62), Expect = 0.47
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 21/80 (26%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
VFI+ P + P+K +M+Y+S K + + + K ++
Sbjct: 99 LVFIFWAPESA-PLKSKMIYASSKDAIKKKFTGI--------------------KHEWQV 137
Query: 62 NSGSELTEEFLLEELHPKKT 81
N ++ + L E
Sbjct: 138 NGLDDIKDRSTLGEKLGGNV 157
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation,
cofilin-like, cytoskeleton, actin-binding, protein
tyrosine kinase-9; 1.70A {Homo sapiens}
Length = 134
Score = 27.6 bits (61), Expect = 0.61
Identities = 8/31 (25%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENL 32
++F+ P S P++ +MLY++ +A + +
Sbjct: 80 WLFLAWSPDNS-PVRLKMLYAATRATVKKEF 109
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of
alpha-helices, structural protein; 1.60A {Mus musculus}
SCOP: d.109.1.2
Length = 142
Score = 27.7 bits (61), Expect = 0.62
Identities = 9/31 (29%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENL 32
++FI P +S ++++MLY++ +A L +
Sbjct: 83 WIFIAWSPDHS-HVRQKMLYAATRATLKKEF 112
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin
regulator, actin-binding protein; HET: TAR; 1.60A
{Plasmodium falciparum} PDB: 2xf1_A
Length = 124
Score = 27.3 bits (60), Expect = 0.84
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENL 32
F S ++RM Y+S K +L+ +
Sbjct: 75 IHFFMYARESS-NSRDRMTYASSKQAILKKI 104
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 27.6 bits (61), Expect = 1.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 40 DKKLKKKKKKKKKKKKKKKFP 60
D KKKKKKKKK+ P
Sbjct: 89 DGDGDGATGKKKKKKKKKRGP 109
Score = 26.8 bits (59), Expect = 1.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 40 DKKLKKKKKKKKKKKKKKKF 59
D KKKKKKKKK+ K
Sbjct: 93 DGATGKKKKKKKKKRGPKVQ 112
Score = 25.7 bits (56), Expect = 4.6
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 40 DKKLKKKKKKKKKKKKKKK 58
KKKKKKKKK
Sbjct: 88 GDGDGDGATGKKKKKKKKK 106
Score = 25.3 bits (55), Expect = 5.3
Identities = 16/70 (22%), Positives = 25/70 (35%)
Query: 44 KKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHPKKTAERPKFDKPKGPPNRGAKRITK 103
+ KKK++KKKK K E +E + ER + + +
Sbjct: 33 EAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDG 92
Query: 104 PQATPQFVKK 113
AT + KK
Sbjct: 93 DGATGKKKKK 102
Score = 25.3 bits (55), Expect = 6.1
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 40 DKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHPKK 80
D KKKKKKKK + +L+P
Sbjct: 87 DGDGDGDGATGKKKKKKKKKRGPKVQTDPPSVPICDLYPNG 127
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 39 IDKKLKKKKKKKKKKKKKK 57
+K+LK+ +KK+K K +
Sbjct: 159 FEKELKELQKKQKHKLEHH 177
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 27.1 bits (59), Expect = 1.4
Identities = 10/63 (15%), Positives = 23/63 (36%)
Query: 8 MPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSEL 67
+P S + L ++ +A + G + + + ++ KK + S L
Sbjct: 66 IPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSAL 125
Query: 68 TEE 70
T +
Sbjct: 126 TRQ 128
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin
binding, protein binding; NMR {Toxoplasma gondii}
Length = 139
Score = 26.2 bits (57), Expect = 1.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENL 32
F+ P + P+K RM Y+S K LL+ L
Sbjct: 90 IQFVLWCPDNA-PVKPRMTYASSKDALLKKL 119
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase,
metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Length = 188
Score = 26.3 bits (59), Expect = 2.2
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 39 IDKKLKKKKKKKKKKKKKKKFPYNSGS 65
I +K++K + K + + +
Sbjct: 154 IRQKVEKLDRLKARAPNSSSVDKLAAA 180
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 26.1 bits (58), Expect = 2.6
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 40 DKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFL-LEEL 76
K K +K +K F Y+S + ++L ++L
Sbjct: 305 PKDYTLTKLHEKGQKVAPDFEYSSHN--NNQWLEPDDL 340
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex,
multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1
PDB: 3puj_A 3c98_A
Length = 594
Score = 26.0 bits (56), Expect = 3.8
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 21 YSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKK 56
+ ++ N+ HLG+ I +++ K ++K++
Sbjct: 432 IPPEDSEIITNMAHLGVPIVTDSTLRRRSKPERKER 467
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 25.5 bits (56), Expect = 5.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 39 IDKKLKKKKKKKKKKKKKKKFPYNSGSELTEE 70
+ +K +KKKKKK K + E EE
Sbjct: 365 LQSSASRKTQKKKKKKASKTAENATSGETLEE 396
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 25.3 bits (55), Expect = 6.7
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 41 KKLKKKKKKKKKKKKKKKF 59
+ K K+ +K
Sbjct: 18 RSNGKNPFKRSTGRKVSNV 36
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 25.1 bits (54), Expect = 6.9
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 32 LHHLGLTIDKKLKKKKKKKKKKKKKKKF 59
+ + + L K+ KK+++K+
Sbjct: 452 IKEVARKLKHYLSKQSNLKKRREKEIII 479
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding;
2.29A {Homo sapiens}
Length = 1128
Score = 25.1 bits (54), Expect = 7.2
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 33 HHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSE 66
H TI + + KK KK+ KK + + G E
Sbjct: 631 KHCAKTISQAVNKKSKKQTGKKGEPEREKP-GVE 663
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 25.1 bits (55), Expect = 7.9
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 39 IDKKLKKKKKKKKKKKKKKKFPYNSGSE 66
I+++ KK+KK+ + KKK + E
Sbjct: 476 IEQEPSKKQKKQHEGSKKKAAARDVTLE 503
Score = 24.7 bits (54), Expect = 9.6
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 41 KKLKKKKKKKKKKKKKKKFPYNSGSELTEEF 71
+ + KK+KK+ + KK L
Sbjct: 476 IEQEPSKKQKKQHEGSKKKAAARDVTLENRL 506
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 24.7 bits (53), Expect = 8.0
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 28 LLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHPKKTAERPKF 87
LL+ G+ ++LKK+ + ++KKK+ L + L+ K
Sbjct: 21 LLQKAKAEGVESIEELKKRLADQIEEKKKE-----LNKIDPLRELEQHLNAGSRIHTNKE 75
Query: 88 DKPKGPPNRGAKRITKPQATPQFVKKL 114
K N+ ++ + K L
Sbjct: 76 HKTTKMSNKSNEKSGNVLPKDKPYKTL 102
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae}
Length = 530
Score = 24.8 bits (53), Expect = 9.3
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 32 LHHLGLTIDKKLKKKKKKKKKKKKKKKF 59
L + + + L +K+K+++ KKK +
Sbjct: 444 LMEVARKLKQYLSEKRKEQEAKKKLLAY 471
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.134 0.387
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,796,534
Number of extensions: 99812
Number of successful extensions: 1506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1138
Number of HSP's successfully gapped: 242
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)