RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy158
(116 letters)
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 137
Score = 40.6 bits (95), Expect = 4e-06
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 22/75 (29%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
FI+S P +++M+Y+ K L + + K F
Sbjct: 81 LCFIFSSP-VGCKPEQQMMYAGSKNRL---------------------VQTAELTKVFEI 118
Query: 62 NSGSELTEEFLLEEL 76
+ +LTE +L E+L
Sbjct: 119 RTTDDLTETWLKEKL 133
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and
(Sus scrofa) [TaxId: 9606]}
Length = 174
Score = 35.4 bits (81), Expect = 6e-04
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 21/81 (25%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
+F P + P+K +M+Y+S K + + + K +
Sbjct: 108 LMFFLWAPELA-PLKSKMIYASSKDAIKKKFQGI--------------------KHECQA 146
Query: 62 NSGSELTEEFLLEELHPKKTA 82
N +L + E+L
Sbjct: 147 NGPEDLNRACIAEKLGGSLIV 167
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]}
Length = 124
Score = 32.9 bits (75), Expect = 0.002
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 3 VFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTI 39
+F + ++ +M+Y+S K L + + +
Sbjct: 81 IFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVEL 117
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 32.9 bits (75), Expect = 0.003
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 21/75 (28%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
F I + +R + K + E + + K+F
Sbjct: 75 FALITWIGENV-SGLQRAKTGTDKTLVKEVVQNF--------------------AKEFVI 113
Query: 62 NSGSELTEEFLLEEL 76
+ EL E+F+ EL
Sbjct: 114 SDRKELEEDFIKSEL 128
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 133
Score = 32.2 bits (73), Expect = 0.005
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 21/76 (27%)
Query: 1 MFVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFP 60
VF P + P++ +M+Y+S K L ++
Sbjct: 77 KIVFFTWSPDTA-PVRSKMVYASSKDAL--------------------RRALNGVSTDVQ 115
Query: 61 YNSGSELTEEFLLEEL 76
SE++ + +LE +
Sbjct: 116 GTDFSEVSYDSVLERV 131
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Acanthamoeba castellanii, actophorin [TaxId: 5755]}
Length = 134
Score = 31.8 bits (72), Expect = 0.007
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 21/75 (28%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
FI P S PIK +M+Y+S K + KKK + +
Sbjct: 78 ITFILWAPD-SAPIKSKMMYTSTKDSI--------------------KKKLVGIQVEVQA 116
Query: 62 NSGSELTEEFLLEEL 76
+E++E+ + E
Sbjct: 117 TDAAEISEDAVSERA 131
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Human (Homo sapiens), non-muscle isoform [TaxId: 9606]}
Length = 166
Score = 31.2 bits (70), Expect = 0.014
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 21/74 (28%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
VFI+ P + P+K +M+Y+S K + + L + K +
Sbjct: 99 LVFIFWAPESA-PLKSKMIYASSKDAIKKKLTGI--------------------KHELQA 137
Query: 62 NSGSELTEEFLLEE 75
N E+ + L E
Sbjct: 138 NCYEEVKDRCTLAE 151
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein
abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 139
Score = 27.9 bits (62), Expect = 0.18
Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 20/77 (25%)
Query: 2 FVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPY 61
+ I P S P+K R +++ A + K +
Sbjct: 79 IIIIGWCPD-SAPLKTRASFAANFAAV-------------------ANNLFKGYHVQVTA 118
Query: 62 NSGSELTEEFLLEELHP 78
+L E LL ++
Sbjct: 119 RDEDDLDENELLMKISN 135
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 143
Score = 26.6 bits (58), Expect = 0.55
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 26 APLLENLHHLGLTIDKKLKKKKKKKKKKKKKKKFPYNS 63
AP G+T+++ ++ ++ K+ NS
Sbjct: 103 APAGVLYKKFGITVEEVVRTGRELAKRFPDGTAPLKNS 140
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 24.1 bits (52), Expect = 3.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 30 ENLHHLGLTIDKKLKKKKKKKKKKKKKKK 58
E L + KKL KKK ++ K+ K
Sbjct: 66 ETLKQQNVRGMKKLDNYKKKDQETKRWLK 94
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 24.5 bits (52), Expect = 4.3
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 42 KLKKKKKKKKKKKKKKKFPYNSGSELTEEFLLEELHPKKTAERPK 86
K K+ K +K K + + SG + E + E +H E P
Sbjct: 152 KFAKRIKLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPT 196
>d2ffga1 d.317.1.1 (A:2-79) Hypothetical protein YkuJ {Bacillus
subtilis [TaxId: 1423]}
Length = 78
Score = 23.2 bits (50), Expect = 4.5
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 65 SELTEEFLLEELHPKKTAERPKFD 88
E + F L + FD
Sbjct: 41 FEKNQTFELTVFQKGEKPNTYPFD 64
>d1w7ca2 d.17.2.1 (A:43-169) Lysyl oxidase PplO, domains 1 and 2
{Yeast (Pichia pastoris) [TaxId: 4922]}
Length = 127
Score = 24.0 bits (52), Expect = 4.6
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 71 FLLEELHPKKTAERPKFDKPKGPPNRGAK 99
+E L P KT D+ P R A+
Sbjct: 54 LWIETLKPNKTEALTYLDEDGDLPPRNAR 82
>d1t23a_ d.247.1.1 (A:) Chromosomal protein MC1 {Archaeon
Methanosarcina thermophila [TaxId: 2210]}
Length = 93
Score = 23.3 bits (50), Expect = 6.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 81 TAERPKFDKPKGPPNRGAKRITKPQATPQFVKKL 114
A + D PK P ++I+KP + ++KL
Sbjct: 59 KAWKEIVDAPKNRPAWMPEKISKPFVKKERIEKL 92
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 164
Score = 23.1 bits (50), Expect = 9.7
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 35 LGLTIDKKLKKKKKKKKKKKK 55
+ + + L +K+K+++ KKK
Sbjct: 141 VARKLKQYLSEKRKEQEAKKK 161
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.134 0.387
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 454,997
Number of extensions: 21957
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 100
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (21.9 bits)