Query psy1580
Match_columns 267
No_of_seqs 149 out of 371
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 21:39:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 100.0 5.1E-48 1.7E-52 324.6 6.9 127 21-154 1-127 (140)
2 1k1g_A SF1-BO isoform; splicin 100.0 4.2E-41 1.4E-45 279.0 7.9 125 19-154 4-128 (131)
3 2yqr_A KIAA0907 protein; struc 99.9 2.3E-28 7.8E-33 200.1 7.0 101 20-140 10-111 (119)
4 2opv_A KHSRP protein; KH domai 98.8 1.4E-08 4.9E-13 76.8 7.7 72 21-122 13-84 (85)
5 1dtj_A RNA-binding neurooncolo 98.7 2E-08 6.9E-13 73.9 6.8 74 20-122 1-74 (76)
6 1x4m_A FAR upstream element bi 98.7 2.5E-08 8.7E-13 77.0 5.5 78 17-124 10-87 (94)
7 1ec6_A RNA-binding protein NOV 98.5 7.6E-08 2.6E-12 73.0 4.3 75 20-123 1-75 (87)
8 2p2r_A Poly(RC)-binding protei 98.5 8.5E-08 2.9E-12 70.9 4.1 74 18-123 1-74 (76)
9 1we8_A Tudor and KH domain con 98.5 1.8E-07 6.1E-12 73.5 6.0 72 22-123 15-86 (104)
10 2dgr_A Ring finger and KH doma 98.5 9.2E-08 3.1E-12 73.0 3.8 69 19-122 7-75 (83)
11 2axy_A Poly(RC)-binding protei 98.4 1.4E-07 4.8E-12 69.7 4.1 71 18-122 1-71 (73)
12 1zzk_A Heterogeneous nuclear r 98.4 3.5E-07 1.2E-11 68.7 6.2 71 21-123 6-76 (82)
13 2hh2_A KH-type splicing regula 98.4 2.7E-07 9.3E-12 72.9 5.5 72 23-123 8-79 (107)
14 1wvn_A Poly(RC)-binding protei 98.4 2.6E-07 8.8E-12 69.3 5.1 71 21-123 5-75 (82)
15 1x4n_A FAR upstream element bi 98.4 2.9E-07 9.8E-12 70.8 5.3 72 20-123 13-84 (92)
16 2cte_A Vigilin; K homology typ 98.4 3.3E-07 1.1E-11 70.8 5.2 69 21-123 16-84 (94)
17 2hh3_A KH-type splicing regula 98.4 3.7E-07 1.3E-11 72.5 5.4 69 23-123 12-80 (106)
18 1vig_A Vigilin; RNA-binding pr 98.3 1.3E-06 4.5E-11 64.2 5.7 66 22-121 5-70 (71)
19 1j5k_A Heterogeneous nuclear r 98.2 8.3E-07 2.9E-11 67.7 4.6 73 19-123 11-83 (89)
20 2ctm_A Vigilin; K homology typ 98.2 1E-06 3.6E-11 68.5 5.2 70 20-122 15-84 (95)
21 2ctl_A Vigilin; K homology typ 98.1 2.9E-06 9.9E-11 66.1 5.4 71 21-122 16-86 (97)
22 2ctk_A Vigilin; K homology typ 98.1 1.7E-06 6E-11 68.2 4.0 68 22-123 17-84 (104)
23 3krm_A Insulin-like growth fac 98.1 3.3E-06 1.1E-10 69.5 5.6 75 19-123 82-156 (163)
24 2jvz_A KH type-splicing, FAR u 98.0 1.1E-05 3.8E-10 66.0 6.3 72 23-124 3-74 (164)
25 2jzx_A Poly(RC)-binding protei 97.9 9.3E-06 3.2E-10 66.6 4.7 71 18-122 1-71 (160)
26 1j4w_A FUSE binding protein; s 97.9 1.7E-05 5.8E-10 66.1 5.6 71 22-121 104-174 (174)
27 2ihx_A Nucleocapsid (NC) prote 97.8 1.4E-05 4.7E-10 57.5 3.8 44 151-194 5-50 (61)
28 2a51_A Nucleocapsid protein; s 97.8 2.1E-05 7.2E-10 51.7 4.1 37 152-191 2-38 (39)
29 1j4w_A FUSE binding protein; s 97.8 2E-05 6.8E-10 65.7 4.6 69 23-123 4-72 (174)
30 2bl6_A Nucleocapsid protein P1 97.7 1.9E-05 6.3E-10 51.5 3.2 35 152-191 2-36 (37)
31 2ec7_A GAG polyprotein (PR55GA 97.7 2.5E-05 8.6E-10 53.9 4.1 41 151-194 7-47 (49)
32 2jzx_A Poly(RC)-binding protei 97.7 2E-05 6.9E-10 64.6 3.6 70 22-122 89-158 (160)
33 2jvz_A KH type-splicing, FAR u 97.7 2.9E-05 1E-09 63.5 4.4 69 23-123 92-160 (164)
34 2anr_A Neuro-oncological ventr 97.7 3.6E-05 1.2E-09 64.3 5.0 74 21-123 5-78 (178)
35 2anr_A Neuro-oncological ventr 97.7 1.7E-05 5.8E-10 66.3 3.0 73 21-123 103-175 (178)
36 2ctj_A Vigilin; K homology typ 97.7 1.8E-05 6.3E-10 61.6 2.7 69 22-124 17-86 (95)
37 2li8_A Protein LIN-28 homolog 97.7 3.8E-05 1.3E-09 57.7 4.2 42 151-194 25-66 (74)
38 2cqf_A RNA-binding protein LIN 97.6 6.7E-05 2.3E-09 54.3 4.4 42 151-194 8-49 (63)
39 3ts2_A Protein LIN-28 homolog 97.6 4.6E-05 1.6E-09 63.7 3.9 45 150-196 97-141 (148)
40 1cl4_A Protein (GAG polyprotei 97.6 3.9E-05 1.3E-09 54.6 3.0 43 153-195 4-51 (60)
41 3krm_A Insulin-like growth fac 97.5 0.0001 3.5E-09 60.5 4.7 70 23-123 4-73 (163)
42 2cpq_A FragIle X mental retard 97.5 6.5E-05 2.2E-09 58.7 3.2 66 19-120 12-78 (91)
43 1a1t_A Nucleocapsid protein; s 97.4 8.5E-05 2.9E-09 51.9 3.2 41 151-194 13-53 (55)
44 3nyb_B Protein AIR2; polya RNA 97.3 0.00015 5.2E-09 55.5 3.9 44 151-194 6-66 (83)
45 1tua_A Hypothetical protein AP 97.2 0.00037 1.3E-08 60.8 5.5 53 38-123 108-160 (191)
46 2e3u_A PH-DIM2P, hypothetical 97.1 0.00031 1.1E-08 62.2 3.7 53 38-123 139-191 (219)
47 2lli_A Protein AIR2; RNA surve 96.9 0.00097 3.3E-08 53.3 4.6 42 151-192 65-123 (124)
48 3u1k_A Polyribonucleotide nucl 96.6 0.00074 2.5E-08 68.1 2.2 62 23-121 568-629 (630)
49 2lli_A Protein AIR2; RNA surve 96.5 0.0024 8.2E-08 51.0 4.6 42 151-194 43-84 (124)
50 2qnd_A FMR1 protein; KH domain 96.1 0.0055 1.9E-07 50.4 4.5 71 24-122 69-141 (144)
51 2e3u_A PH-DIM2P, hypothetical 95.9 0.0046 1.6E-07 54.7 3.5 69 23-123 35-103 (219)
52 2ctf_A Vigilin; K homology typ 95.1 0.05 1.7E-06 42.5 6.4 64 22-122 27-91 (102)
53 1a6b_B Momulv, zinc finger pro 95.0 0.019 6.6E-07 38.4 3.4 25 174-198 10-34 (40)
54 3n89_A Defective in GERM LINE 95.0 0.046 1.6E-06 52.1 7.1 80 14-120 22-103 (376)
55 1u6p_A GAG polyprotein; MLV, A 94.7 0.042 1.4E-06 39.3 4.5 31 169-199 18-48 (56)
56 4aid_A Polyribonucleotide nucl 94.4 0.0074 2.5E-07 61.9 0.2 63 24-123 572-634 (726)
57 1dsq_A Nucleic acid binding pr 94.4 0.022 7.5E-07 34.4 2.2 20 175-194 3-22 (26)
58 2li8_A Protein LIN-28 homolog 94.4 0.022 7.4E-07 42.5 2.6 36 158-193 1-43 (74)
59 2qnd_A FMR1 protein; KH domain 93.7 0.012 4.1E-07 48.3 -0.0 31 22-58 4-34 (144)
60 1nc8_A Nucleocapsid protein; H 91.7 0.082 2.8E-06 32.5 1.9 19 175-193 7-25 (29)
61 1tua_A Hypothetical protein AP 90.1 0.064 2.2E-06 46.6 0.4 40 20-65 2-41 (191)
62 3v69_A Protein filia; RNA-bind 89.6 0.065 2.2E-06 44.9 -0.0 29 36-64 64-92 (140)
63 2ysa_A Retinoblastoma-binding 88.6 0.13 4.5E-06 36.5 1.0 20 175-194 8-27 (55)
64 2a51_A Nucleocapsid protein; s 87.4 0.27 9.1E-06 31.8 1.9 19 175-193 1-19 (39)
65 2bl6_A Nucleocapsid protein P1 85.7 0.4 1.4E-05 30.6 2.0 18 176-193 2-19 (37)
66 2hqh_E Restin; beta/BETA struc 85.2 0.18 6E-06 31.1 0.1 19 174-192 3-21 (26)
67 2ec7_A GAG polyprotein (PR55GA 84.2 0.48 1.6E-05 32.1 2.0 19 175-193 7-25 (49)
68 3n89_A Defective in GERM LINE 82.5 0.88 3E-05 43.4 3.7 72 22-121 186-259 (376)
69 2ihx_A Nucleocapsid (NC) prote 80.7 0.69 2.4E-05 32.6 1.7 21 174-194 4-24 (61)
70 1a6b_B Momulv, zinc finger pro 79.9 1.7 5.7E-05 28.9 3.3 21 151-171 11-31 (40)
71 1a1t_A Nucleocapsid protein; s 78.8 0.74 2.5E-05 31.6 1.3 20 174-193 12-31 (55)
72 3cdi_A Polynucleotide phosphor 78.2 0.43 1.5E-05 48.8 0.0 31 37-67 569-599 (723)
73 2cqf_A RNA-binding protein LIN 78.0 1.1 3.8E-05 31.8 2.1 19 175-193 8-26 (63)
74 3nyb_B Protein AIR2; polya RNA 77.7 0.72 2.5E-05 35.0 1.1 20 174-193 5-24 (83)
75 1e3p_A Guanosine pentaphosphat 73.3 0.48 1.6E-05 48.8 -1.2 37 25-67 601-637 (757)
76 1u6p_A GAG polyprotein; MLV, A 72.9 1.7 5.8E-05 30.8 2.0 21 151-171 24-44 (56)
77 1cl4_A Protein (GAG polyprotei 71.7 0.8 2.7E-05 31.9 0.0 19 176-194 3-21 (60)
78 1dsq_A Nucleic acid binding pr 69.3 2.4 8.3E-05 25.2 1.8 18 152-169 4-21 (26)
79 3ts2_A Protein LIN-28 homolog 66.4 1.9 6.7E-05 35.5 1.3 19 174-192 97-115 (148)
80 2pzo_E CAP-Gly domain-containi 64.8 1.4 4.8E-05 29.9 0.1 22 172-193 18-39 (42)
81 1nc8_A Nucleocapsid protein; H 64.6 1.4 4.7E-05 26.8 0.0 20 150-169 6-25 (29)
82 2cxc_A NUSA; transcription ter 64.1 2 6.8E-05 35.7 0.9 30 37-66 45-74 (144)
83 3e2u_E CAP-Gly domain-containi 61.7 1.8 6.3E-05 29.3 0.2 22 172-193 18-39 (42)
84 2ysa_A Retinoblastoma-binding 48.9 12 0.00043 26.2 2.8 20 150-169 7-26 (55)
85 3alr_A Nanos protein; zinc-fin 46.3 12 0.00039 30.0 2.5 34 160-196 54-96 (106)
86 4ayb_P DNA-directed RNA polyme 42.7 19 0.00063 25.0 2.8 29 150-182 3-31 (48)
87 2z0s_A Probable exosome comple 37.2 31 0.0011 30.0 4.2 69 37-139 157-225 (235)
88 1k0r_A NUSA; two component arr 34.7 8.5 0.00029 36.5 0.1 42 25-67 238-280 (366)
89 2asb_A Transcription elongatio 31.5 10 0.00035 34.3 0.0 43 24-67 114-157 (251)
90 2pt7_G HP1451, hypothetical pr 29.7 7.5 0.00026 32.5 -1.1 20 39-58 44-63 (152)
91 3k7a_M Transcription initiatio 26.5 40 0.0014 30.8 3.1 34 146-183 17-51 (345)
92 1hh2_P NUSA, N utilization sub 24.1 23 0.00078 33.2 1.0 41 25-66 234-275 (344)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=100.00 E-value=5.1e-48 Score=324.63 Aligned_cols=127 Identities=37% Similarity=0.672 Sum_probs=120.9
Q ss_pred ceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEec
Q psy1580 21 KVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAF 100 (267)
Q Consensus 21 k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~ 100 (267)
.+++|||||+++||+|||||+||||||+|+|+||++|||||.|||+||+|++++++.++ |+|+|+|++|||||+|+++
T Consensus 1 ~~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~--g~~~~~~~~epLHV~Isa~ 78 (140)
T 2bl5_A 1 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNR--GKPNWEHLNEDLHVLITVE 78 (140)
T ss_dssp CEEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTST--TSHHHHTTTSCCEEEEEEC
T ss_pred CceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCccccccccccc--CCCCccccCCCcEEEEEec
Confidence 37899999999999999999999999999999999999999999999999999887654 8899999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhhcCCCcCCCCcchhHHHHHHHHHHHHhhCCCCCC
Q psy1580 101 APPAEAHARIAYALAEVRRFLVPFTRSLFQDYNDEIRQEQMWEMQILKEDGGAA 154 (267)
Q Consensus 101 ~~~~~a~~rl~~Av~~I~~lL~P~~~s~~~d~~DelK~~QL~ELA~lNGt~r~~ 154 (267)
+++++|+++|++|+++|++||+|++ +++|++|++||+|||+||||||+.
T Consensus 79 ~~~~~~~~~l~~A~~~I~~lL~p~~-----e~~de~K~~QL~eLA~lNGt~r~~ 127 (140)
T 2bl5_A 79 DAQNRAELKLKRAVEEVKKLLVPAA-----EGEDSLKKMKLMELAILNGTYRDA 127 (140)
T ss_dssp SCCHHHHHHHHHHHHHHHHHSSCCS-----SSSSHHHHHHHTGGGSSSTTTSGG
T ss_pred CchhhHHHHHHHHHHHHHHHCCCCC-----cchhHHHHHHHHHHHHhcCCcCCC
Confidence 9999999999999999999999976 889999999999999999999974
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=100.00 E-value=4.2e-41 Score=278.98 Aligned_cols=125 Identities=26% Similarity=0.449 Sum_probs=109.6
Q ss_pred CcceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEE
Q psy1580 19 PIKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEIT 98 (267)
Q Consensus 19 p~k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIs 98 (267)
..|+++|||||+++||+|||||+||||+|+|+|+||++|||||.|||+||+++++++ +.+|++ |+|++|||||+|+
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~---~~~~~~-~~~~~e~lhV~I~ 79 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVG---RKDGQM-LPGEDEPLHALVT 79 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSS---SCCCCC-SCCSSCCEEEEEE
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCccccccccc---cccccc-ccccCCCeEEEEE
Confidence 468999999999999999999999999999999999999999999999999998654 444554 7899999999999
Q ss_pred ecCChhHHHHHHHHHHHHHHHhhcCCCcCCCCcchhHHHHHHHHHHHHhhCCCCCC
Q psy1580 99 AFAPPAEAHARIAYALAEVRRFLVPFTRSLFQDYNDEIRQEQMWEMQILKEDGGAA 154 (267)
Q Consensus 99 a~~~~~~a~~rl~~Av~~I~~lL~P~~~s~~~d~~DelK~~QL~ELA~lNGt~r~~ 154 (267)
++++ ++|++|+++|+.||.+.. ++|+++|++|++||+|||+||||||++
T Consensus 80 a~~~-----e~~~~A~~~I~~ll~~~~--~~p~~~d~~k~~Ql~eLa~~nGt~r~~ 128 (131)
T 1k1g_A 80 ANTM-----ENVKKAVEQIRNILKQGI--ETPEDQNDLRKMQLRELARLNGTLRED 128 (131)
T ss_dssp ESSH-----HHHHHHHHHHHHHHTTTT--SCCTTSSGGGGGGGHHHHHHHTCCC--
T ss_pred ECCH-----HHHHHHHHHHHHHHhccC--CCCccHHHHHHHHHHHHHHHcCcCCCc
Confidence 9874 789999999999996532 123899999999999999999999975
No 3
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=2.3e-28 Score=200.07 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=87.1
Q ss_pred cceEEEEEecCC-CCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEE
Q psy1580 20 IKVTIRVIVPVR-DHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEIT 98 (267)
Q Consensus 20 ~k~~eKI~IPvk-eyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIs 98 (267)
.++++|||||++ .||+|||+|+||||+|+|+|+||+||||||.|||+||++.... .-++++|||||+|+
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~----------~~~e~~e~l~V~I~ 79 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPA----------SGREAFEPMYIYIS 79 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTT----------TSSCCSSBCEEEEE
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccc----------cccccCCCcEEEEE
Confidence 468999999999 6999999999999999999999999999999999999985321 12358899999999
Q ss_pred ecCChhHHHHHHHHHHHHHHHhhcCCCcCCCCcchhHHHHHH
Q psy1580 99 AFAPPAEAHARIAYALAEVRRFLVPFTRSLFQDYNDEIRQEQ 140 (267)
Q Consensus 99 a~~~~~~a~~rl~~Av~~I~~lL~P~~~s~~~d~~DelK~~Q 140 (267)
+.++ +.+++|+++|+.||.++. +..+++|++|
T Consensus 80 a~~~-----e~i~~A~~~Ie~Ll~~v~-----~~~~~~~~q~ 111 (119)
T 2yqr_A 80 HPKP-----EGLAAAKKLCENLLQTVH-----AEYSRFVNQI 111 (119)
T ss_dssp ESSH-----HHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred eCCH-----HHHHHHHHHHHHHhhchH-----HHHHHHHHhh
Confidence 9875 789999999999999875 5567776654
No 4
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.79 E-value=1.4e-08 Score=76.82 Aligned_cols=72 Identities=22% Similarity=0.357 Sum_probs=57.8
Q ss_pred ceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEec
Q psy1580 21 KVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAF 100 (267)
Q Consensus 21 k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~ 100 (267)
.....|.||. +++|+|||++|.|+|+|+++|||+|.|...|+. + ...+-.|.|++
T Consensus 13 ~~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--------------~----~~~er~v~I~G- 67 (85)
T 2opv_A 13 GTVQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--------------N----TNVDKPLRIIG- 67 (85)
T ss_dssp SEEEEEEECT------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS--------------S----TTSCEEEEEEE-
T ss_pred CEEEEEEeCh------hheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC--------------C----CCCceEEEEEe-
Confidence 4567899994 589999999999999999999999999875531 0 13455799998
Q ss_pred CChhHHHHHHHHHHHHHHHhhc
Q psy1580 101 APPAEAHARIAYALAEVRRFLV 122 (267)
Q Consensus 101 ~~~~~a~~rl~~Av~~I~~lL~ 122 (267)
++ +.+++|+++|+.++.
T Consensus 68 ~~-----~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 68 DP-----YKVQQACEMVMDILR 84 (85)
T ss_dssp CH-----HHHHHHHHHHHHHHT
T ss_pred CH-----HHHHHHHHHHHHHhc
Confidence 43 688999999998874
No 5
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.74 E-value=2e-08 Score=73.90 Aligned_cols=74 Identities=30% Similarity=0.354 Sum_probs=58.2
Q ss_pred cceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEe
Q psy1580 20 IKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITA 99 (267)
Q Consensus 20 ~k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa 99 (267)
++.+.++.||. +++|+|||++|.++|+|+++|||+|.|...+... | ...+-.|.|++
T Consensus 1 ~~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~-------------~----~~~~~~v~I~G 57 (76)
T 1dtj_A 1 MKELVEMAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------------P----GTRNRRVTITG 57 (76)
T ss_dssp CCEEEEEEEET------TTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS-------------T----TCCEEEEEEEE
T ss_pred CceEEEEEECh------HHcceEECCCchHHHHHHHHhCCEEEECcCCCCC-------------C----CCceeEEEEEe
Confidence 46678899995 5899999999999999999999999997643111 1 12455788888
Q ss_pred cCChhHHHHHHHHHHHHHHHhhc
Q psy1580 100 FAPPAEAHARIAYALAEVRRFLV 122 (267)
Q Consensus 100 ~~~~~~a~~rl~~Av~~I~~lL~ 122 (267)
. .+.+.+|..+|+.++.
T Consensus 58 ~------~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 58 S------PAATQAAQYLISQRVT 74 (76)
T ss_dssp S------HHHHHHHHHHHHHHCC
T ss_pred C------HHHHHHHHHHHHHHHh
Confidence 5 2688999999998875
No 6
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.66 E-value=2.5e-08 Score=76.99 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=62.5
Q ss_pred CCCcceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEE
Q psy1580 17 DKPIKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVE 96 (267)
Q Consensus 17 ~kp~k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVl 96 (267)
..|-..+.+|.||. +++|+|||++|.|+|+|+++|||+|.|-..+... ...+-.|.
T Consensus 10 ~~p~~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~------------------~~~~r~v~ 65 (94)
T 1x4m_A 10 DGPGNAVQEIMIPA------SKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN------------------TGADKPLR 65 (94)
T ss_dssp CCCCCEEEEEEECH------HHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS------------------SCSCEEEE
T ss_pred CCCCcEEEEEEECh------hhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC------------------CCCceEEE
Confidence 45778889999994 5999999999999999999999999997644210 12456788
Q ss_pred EEecCChhHHHHHHHHHHHHHHHhhcCC
Q psy1580 97 ITAFAPPAEAHARIAYALAEVRRFLVPF 124 (267)
Q Consensus 97 Isa~~~~~~a~~rl~~Av~~I~~lL~P~ 124 (267)
|+++ + +.+++|+++|+.+|...
T Consensus 66 I~G~-~-----~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 66 ITGD-P-----YKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp EEEC-T-----TTHHHHHHHHHHHHCCC
T ss_pred EEeC-H-----HHHHHHHHHHHHHHhcc
Confidence 9984 3 57899999999998653
No 7
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.50 E-value=7.6e-08 Score=72.98 Aligned_cols=75 Identities=29% Similarity=0.342 Sum_probs=58.1
Q ss_pred cceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEe
Q psy1580 20 IKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITA 99 (267)
Q Consensus 20 ~k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa 99 (267)
+|.+.+|.||. +++|+|||++|.++|+|+++|||+|.|-..+... | ...+-.|.|++
T Consensus 1 ~k~t~~i~IP~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-------------~----g~~~r~v~I~G 57 (87)
T 1ec6_A 1 MKELVEIAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------------P----GTRNRRVTITG 57 (87)
T ss_dssp CCSEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS-------------T----TSCEEEEEEES
T ss_pred CceEEEEEECh------HHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC-------------C----CCCceEEEEEc
Confidence 45677899994 5899999999999999999999999997643111 1 12345688888
Q ss_pred cCChhHHHHHHHHHHHHHHHhhcC
Q psy1580 100 FAPPAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 100 ~~~~~~a~~rl~~Av~~I~~lL~P 123 (267)
. .+.+.+|..+|..++.-
T Consensus 58 ~------~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 58 S------PAATQAAQYLISQRVTY 75 (87)
T ss_dssp S------HHHHHHHHHHHHHHHHH
T ss_pred C------HHHHHHHHHHHHHHHhc
Confidence 5 26889999999998754
No 8
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.49 E-value=8.5e-08 Score=70.92 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=58.4
Q ss_pred CCcceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEE
Q psy1580 18 KPIKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEI 97 (267)
Q Consensus 18 kp~k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlI 97 (267)
|+...+.+|.||. +++|.|||++|.++|+|+++|||+|.|... . + ...+=.|.|
T Consensus 1 ~~~~~~~~i~Ip~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~-------------~----~~~~~~v~I 54 (76)
T 2p2r_A 1 KAQTTSHELTIPN------DLIGCIIGRQGAKINEIRQMSGAQIKIANP---V-------------E----GSTDRQVTI 54 (76)
T ss_dssp --CCEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCC---C-------------T----TCSEEEEEE
T ss_pred CCCceEEEEEECh------HHcceEECCCChHHHHHHHHHCCEEEEcCC---C-------------C----CCCeEEEEE
Confidence 4567788999994 589999999999999999999999999642 0 1 123457889
Q ss_pred EecCChhHHHHHHHHHHHHHHHhhcC
Q psy1580 98 TAFAPPAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 98 sa~~~~~~a~~rl~~Av~~I~~lL~P 123 (267)
++. .+.+.+|.++|..+|..
T Consensus 55 ~G~------~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 55 TGS------AASISLAQYLINVRLSS 74 (76)
T ss_dssp EEC------HHHHHHHHHHHHHHHTT
T ss_pred EeC------HHHHHHHHHHHHHHHHc
Confidence 885 26889999999998864
No 9
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.48 E-value=1.8e-07 Score=73.46 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=56.9
Q ss_pred eEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecC
Q psy1580 22 VTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFA 101 (267)
Q Consensus 22 ~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~ 101 (267)
...+|.||. +++|+|||++|.|+|+|+++|||+|.|-..... . ..++-.|.|++..
T Consensus 15 ~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~-------------~-----~~~~~~V~I~G~~ 70 (104)
T 1we8_A 15 VFEQLSVPQ------RSVGRIIGRGGETIRSICKASGAKITCDKESEG-------------T-----LLLSRLIKISGTQ 70 (104)
T ss_dssp EEEEEEEET------TTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC-------------S-----SSSEEEEEEEEEH
T ss_pred EEEEEEECh------hheeeeECCCCHHHHHHHHHHCCEEEEecCCCC-------------C-----CCCcceEEEEcCH
Confidence 567899994 589999999999999999999999999754210 0 1245678999863
Q ss_pred ChhHHHHHHHHHHHHHHHhhcC
Q psy1580 102 PPAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 102 ~~~~a~~rl~~Av~~I~~lL~P 123 (267)
+.+++|+++|+.++..
T Consensus 71 ------~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 71 ------KEVAAAKHLILEKVSE 86 (104)
T ss_dssp ------HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhh
Confidence 4689999999998854
No 10
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=9.2e-08 Score=73.04 Aligned_cols=69 Identities=32% Similarity=0.483 Sum_probs=53.8
Q ss_pred CcceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEE
Q psy1580 19 PIKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEIT 98 (267)
Q Consensus 19 p~k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIs 98 (267)
|-.....|.||. +++|.|||++|.|+|+||++|||+|.|-.++ +++ .|.|+
T Consensus 7 ~~~~~~~i~VP~------~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~----------------------~~~-~v~It 57 (83)
T 2dgr_A 7 GGQTTIQVRVPY------RVVGLVVGPKGATIKRIQQRTHTYIVTPGRD----------------------KEP-VFAVT 57 (83)
T ss_dssp CCSEEEEEECCH------HHHHHHHTTTTSSHHHHHHHTTCEEECCCSS----------------------SCC-EEEEE
T ss_pred CCceEEEEEeCh------HHeeeeECCCchHHHHHHHHhCCeEEecCCC----------------------CCC-eEEEE
Confidence 445677788873 8999999999999999999999999995321 122 37888
Q ss_pred ecCChhHHHHHHHHHHHHHHHhhc
Q psy1580 99 AFAPPAEAHARIAYALAEVRRFLV 122 (267)
Q Consensus 99 a~~~~~~a~~rl~~Av~~I~~lL~ 122 (267)
+.. +.+++|..+|..++.
T Consensus 58 G~~------e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 58 GMP------ENVDRAREEIEAHIT 75 (83)
T ss_dssp ECT------TTHHHHHHHHHHHHH
T ss_pred cCH------HHHHHHHHHHHHHHh
Confidence 864 578899999988653
No 11
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.43 E-value=1.4e-07 Score=69.65 Aligned_cols=71 Identities=27% Similarity=0.379 Sum_probs=56.8
Q ss_pred CCcceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEE
Q psy1580 18 KPIKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEI 97 (267)
Q Consensus 18 kp~k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlI 97 (267)
|+..+..++.||. +.+|.|||++|.++|+|+++|||+|.|-..|+ .+=-|.|
T Consensus 1 ~~~~~~~~i~ip~------~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~----------------------~er~v~I 52 (73)
T 2axy_A 1 KNVTLTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC----------------------PERIITL 52 (73)
T ss_dssp CCCCEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC----------------------SEEEEEE
T ss_pred CCceEEEEEEECh------hHeeeEECCCCHHHHHHHHHHCCEEEEecCCC----------------------CcEEEEE
Confidence 4566788999993 68999999999999999999999999965321 1234788
Q ss_pred EecCChhHHHHHHHHHHHHHHHhhc
Q psy1580 98 TAFAPPAEAHARIAYALAEVRRFLV 122 (267)
Q Consensus 98 sa~~~~~~a~~rl~~Av~~I~~lL~ 122 (267)
++. .+.+.+|+++|..+|.
T Consensus 53 ~G~------~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 53 AGP------TNAIFKAFAMIIDKLE 71 (73)
T ss_dssp EEC------HHHHHHHHHHHHHHHH
T ss_pred EeC------HHHHHHHHHHHHHHHh
Confidence 886 2678899999998874
No 12
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.43 E-value=3.5e-07 Score=68.72 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=55.9
Q ss_pred ceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEec
Q psy1580 21 KVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAF 100 (267)
Q Consensus 21 k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~ 100 (267)
+.+.+|.||. +++|.|||++|.++|+|+++|||+|.|...- +. ..+-.|.|++.
T Consensus 6 ~~~~~i~Vp~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~----------------~~----~~~~~v~I~G~ 59 (82)
T 1zzk_A 6 IITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEPL----------------EG----SEDRIITITGT 59 (82)
T ss_dssp CEEEEEEEET------TTGGGGTCGGGHHHHHHHHHHCCEEEECCTT----------------SC----SSEEEEEEEEC
T ss_pred eEEEEEEECh------HhcCeeECCCchHHHHHHHHHCCEEEEcCCC----------------CC----CCceEEEEEeC
Confidence 5677899995 5899999999999999999999999996310 10 13356889884
Q ss_pred CChhHHHHHHHHHHHHHHHhhcC
Q psy1580 101 APPAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 101 ~~~~~a~~rl~~Av~~I~~lL~P 123 (267)
.+.+++|.++|+.++..
T Consensus 60 ------~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 60 ------QDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp ------HHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHh
Confidence 26888999999988753
No 13
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.41 E-value=2.7e-07 Score=72.93 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=55.9
Q ss_pred EEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecCC
Q psy1580 23 TIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFAP 102 (267)
Q Consensus 23 ~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~~ 102 (267)
+.+|.||. +++|+|||++|+|+|+|+++|||+|.|..... +. ....+-.|.|++.
T Consensus 8 ~~~i~IP~------~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~---------------~~--~~~~~r~V~I~G~-- 62 (107)
T 2hh2_A 8 EMTFSIPT------HKCGLVIGRGGENVKAINQQTGAFVEISRQLP---------------PN--GDPNFKLFIIRGS-- 62 (107)
T ss_dssp CEEEEEEG------GGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC---------------TT--CCTTEEEEEEESC--
T ss_pred eEEEEECH------HHcCccCCCCcHHHHHHHHHhCCEEEEcCccC---------------CC--CCCCceEEEEECC--
Confidence 56889984 58999999999999999999999999975421 10 0123456888883
Q ss_pred hhHHHHHHHHHHHHHHHhhcC
Q psy1580 103 PAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 103 ~~~a~~rl~~Av~~I~~lL~P 123 (267)
.+.+++|+++|+.++.-
T Consensus 63 ----~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 63 ----PQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp ----HHHHHHHHHHHHHHSCS
T ss_pred ----HHHHHHHHHHHHHHHhc
Confidence 36889999999998864
No 14
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.41 E-value=2.6e-07 Score=69.32 Aligned_cols=71 Identities=21% Similarity=0.284 Sum_probs=56.5
Q ss_pred ceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEec
Q psy1580 21 KVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAF 100 (267)
Q Consensus 21 k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~ 100 (267)
..+.+|.||. +++|.|||++|.++|+|+++|||+|.|-... + ...+-.|.|++.
T Consensus 5 ~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~----------------~----~~~~r~v~I~G~ 58 (82)
T 1wvn_A 5 QTTHELTIPN------NLIGCIIGRQGANINEIRQMSGAQIKIANPV----------------E----GSSGRQVTITGS 58 (82)
T ss_dssp CEEEEEEEEG------GGHHHHHCGGGHHHHHHHHHHCCEEEECCCC----------------T----TCSEEEEEEEEC
T ss_pred cEEEEEEEch------HhccceeCCCchhHHHHHHHhCCEEEEecCC----------------C----CCCceEEEEEcC
Confidence 4667899994 5899999999999999999999999996421 0 123456888885
Q ss_pred CChhHHHHHHHHHHHHHHHhhcC
Q psy1580 101 APPAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 101 ~~~~~a~~rl~~Av~~I~~lL~P 123 (267)
. +.+.+|+++|+.++.-
T Consensus 59 ~------~~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 59 A------ASISLAQYLINARLSS 75 (82)
T ss_dssp H------HHHHHHHHHHHHHTC-
T ss_pred H------HHHHHHHHHHHHHHHh
Confidence 2 6789999999998864
No 15
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.40 E-value=2.9e-07 Score=70.78 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=57.6
Q ss_pred cceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEe
Q psy1580 20 IKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITA 99 (267)
Q Consensus 20 ~k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa 99 (267)
.....+|.||. +++|+|||++|.|+|+|+++|||+|.|.... + ...+-.|.|++
T Consensus 13 ~~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~---~-----------------g~~~r~v~I~G 66 (92)
T 1x4n_A 13 SVMTEEYKVPD------GMVGFIIGRGGEQISRIQQESGCKIQIAPDS---G-----------------GLPERSCMLTG 66 (92)
T ss_dssp CCEEEEEEEEH------HHHHHHHCSSSHHHHHHHHHSCCEEEECSCC---T-----------------TCSEEEEEEEE
T ss_pred CCEEEEEEECh------HHcceeECCCchHHHHHHHHhCCEEEEcCCC---C-----------------CCCccEEEEEe
Confidence 45678899994 5999999999999999999999999997542 0 02344688888
Q ss_pred cCChhHHHHHHHHHHHHHHHhhcC
Q psy1580 100 FAPPAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 100 ~~~~~~a~~rl~~Av~~I~~lL~P 123 (267)
. .+.+++|.++|+.++..
T Consensus 67 ~------~e~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 67 T------PESVQSAKRLLDQIVEK 84 (92)
T ss_dssp C------HHHHHHHHHHHHHHHHH
T ss_pred C------HHHHHHHHHHHHHHHHh
Confidence 5 26789999999998864
No 16
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.38 E-value=3.3e-07 Score=70.79 Aligned_cols=69 Identities=22% Similarity=0.237 Sum_probs=54.6
Q ss_pred ceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEec
Q psy1580 21 KVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAF 100 (267)
Q Consensus 21 k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~ 100 (267)
..+..|.||. .++|.||||+|.|+|+|+++|||+|.|-..+ ++.=.|.|++.
T Consensus 16 ~~t~~i~Ip~------~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~----------------------~~~~~V~I~G~ 67 (94)
T 2cte_A 16 QASATVAIPK------EHHRFVIGKNGEKLQDLELKTATKIQIPRPD----------------------DPSNQIKITGT 67 (94)
T ss_dssp CEEEEEECCT------TTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT----------------------SSCCEEEEEEC
T ss_pred ceEEEEEECh------HHeeeeECCCChhHHHHHHHHCCEEEeCCCC----------------------CCCCeEEEEEC
Confidence 4778899994 4789999999999999999999999994321 11236888886
Q ss_pred CChhHHHHHHHHHHHHHHHhhcC
Q psy1580 101 APPAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 101 ~~~~~a~~rl~~Av~~I~~lL~P 123 (267)
+ +.+.+|.++|+.++..
T Consensus 68 -~-----e~v~~A~~~I~~i~~~ 84 (94)
T 2cte_A 68 -K-----EGIEKARHEVLLISAE 84 (94)
T ss_dssp -H-----HHHHHHHHHHHHHHHH
T ss_pred -H-----HHHHHHHHHHHHHhhc
Confidence 2 6788999999888743
No 17
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.37 E-value=3.7e-07 Score=72.52 Aligned_cols=69 Identities=25% Similarity=0.268 Sum_probs=55.0
Q ss_pred EEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecCC
Q psy1580 23 TIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFAP 102 (267)
Q Consensus 23 ~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~~ 102 (267)
+.+|.||. +++|+|||+.|+|+|+|+++|||+|.|...+ + ...+-.|.|++.
T Consensus 12 ~~~i~Ip~------~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~----------------~----~~~er~V~I~G~-- 63 (106)
T 2hh3_A 12 GIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD----------------G----TGPEKIAHIMGP-- 63 (106)
T ss_dssp CEEEEEET------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSC----------------S----SSSEEEEEEESS--
T ss_pred EEEEEECH------HHcCccCCCCcHHHHHHHHHHCcEEEEecCC----------------C----CCceeEEEEEeC--
Confidence 56788984 5899999999999999999999999996421 0 123557888875
Q ss_pred hhHHHHHHHHHHHHHHHhhcC
Q psy1580 103 PAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 103 ~~~a~~rl~~Av~~I~~lL~P 123 (267)
.+.+++|.++|+.++..
T Consensus 64 ----~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 64 ----PDRCEHAARIINDLLQS 80 (106)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHhc
Confidence 36788999999998754
No 18
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.26 E-value=1.3e-06 Score=64.19 Aligned_cols=66 Identities=14% Similarity=0.220 Sum_probs=51.6
Q ss_pred eEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecC
Q psy1580 22 VTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFA 101 (267)
Q Consensus 22 ~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~ 101 (267)
.+..|.||. .++|.||||+|.++++|+++|||+|.|--.|+ .+=-|.|++..
T Consensus 5 ~~~~i~I~~------~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~----------------------~~~~V~I~G~~ 56 (71)
T 1vig_A 5 DYVEINIDH------KFHRHLIGKSGANINRIKDQYKVSVRIPPDSE----------------------KSNLIRIEGDP 56 (71)
T ss_dssp EEEEEEECS------SHHHHHTCSSCCHHHHHHHHTCCEEECCCCCS----------------------SSEEEEEEESS
T ss_pred EEEEEEECH------HHhhhhcCCCCccHHHHHHHHCCEEEECCCCC----------------------cccEEEEEcCH
Confidence 345778883 58999999999999999999999999864331 01158888862
Q ss_pred ChhHHHHHHHHHHHHHHHhh
Q psy1580 102 PPAEAHARIAYALAEVRRFL 121 (267)
Q Consensus 102 ~~~~a~~rl~~Av~~I~~lL 121 (267)
+.+++|.++|+.++
T Consensus 57 ------~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 57 ------QGVQQAKRELLELA 70 (71)
T ss_dssp ------HHHHHHHHHHHHTC
T ss_pred ------HHHHHHHHHHHHHh
Confidence 56889999998875
No 19
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.25 E-value=8.3e-07 Score=67.68 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=57.0
Q ss_pred CcceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEE
Q psy1580 19 PIKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEIT 98 (267)
Q Consensus 19 p~k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIs 98 (267)
..+...+|.||. +++|+|||++|.++|+|+++|||+|.|...- + ...+=.|.|+
T Consensus 11 ~~~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~----------------~----~~~~~~v~I~ 64 (89)
T 1j5k_A 11 GPIITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEPL----------------E----GSEDRIITIT 64 (89)
T ss_dssp CCEEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHTCCEEEECSCC----------------S----SSSEEEEEEE
T ss_pred CCeEEEEEEECh------hhcceeECCCCHhHHHHHHHhCCeEEecCCC----------------C----CCCccEEEEE
Confidence 446778899994 5999999999999999999999999995310 1 0233468888
Q ss_pred ecCChhHHHHHHHHHHHHHHHhhcC
Q psy1580 99 AFAPPAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 99 a~~~~~~a~~rl~~Av~~I~~lL~P 123 (267)
+. .+.+++|+++|+.++..
T Consensus 65 G~------~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 65 GT------QDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp EE------HHHHHHHHHHHHHHHHH
T ss_pred cC------HHHHHHHHHHHHHHHHh
Confidence 85 26788999999988753
No 20
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.24 E-value=1e-06 Score=68.47 Aligned_cols=70 Identities=11% Similarity=0.260 Sum_probs=53.6
Q ss_pred cceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEe
Q psy1580 20 IKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITA 99 (267)
Q Consensus 20 ~k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa 99 (267)
-..+..+.||. .++|+||||+|.++|+|+++|||+|.|-..|+ ..+=.|.|++
T Consensus 15 ~~vt~~i~Ip~------~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~---------------------~~~~~V~I~G 67 (95)
T 2ctm_A 15 QMVSEDVPLDH------RVHARIIGARGKAIRKIMDEFKVDIRFPQSGA---------------------PDPNCVTVTG 67 (95)
T ss_dssp TCCCEEEECCT------TTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC---------------------SCTTEEEEES
T ss_pred ccEEEEEEECH------HHccccCCCCcchHHHHHHHHCCeEEecCCCC---------------------CCCcEEEEEc
Confidence 34567889994 47899999999999999999999999955432 0123588887
Q ss_pred cCChhHHHHHHHHHHHHHHHhhc
Q psy1580 100 FAPPAEAHARIAYALAEVRRFLV 122 (267)
Q Consensus 100 ~~~~~~a~~rl~~Av~~I~~lL~ 122 (267)
.. +.+++|+++|+.|+.
T Consensus 68 ~~------e~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 68 LP------ENVEEAIDHILNLEE 84 (95)
T ss_dssp CH------HHHHHHHHHHHHHHH
T ss_pred CH------HHHHHHHHHHHHHHH
Confidence 52 568888888888764
No 21
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.12 E-value=2.9e-06 Score=66.08 Aligned_cols=71 Identities=14% Similarity=0.262 Sum_probs=54.0
Q ss_pred ceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEec
Q psy1580 21 KVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAF 100 (267)
Q Consensus 21 k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~ 100 (267)
.....|.||. .++|+||||+|.++|+|+++|||+|.|--.|. +. ...--|.|++.
T Consensus 16 ~~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~---------------~~----~~~~~V~I~G~ 70 (97)
T 2ctl_A 16 SFKLSVTVDP------KYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD---------------GN----QPQDQITITGY 70 (97)
T ss_dssp TCEEEEECCT------TTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT---------------CS----SCSSEEEEESC
T ss_pred ceeEEEEECH------HHhhhcCCCCchhHHHHHHHHCCEEEecCCCC---------------CC----CCccEEEEEeC
Confidence 4567888883 58999999999999999999999999965442 11 12335888875
Q ss_pred CChhHHHHHHHHHHHHHHHhhc
Q psy1580 101 APPAEAHARIAYALAEVRRFLV 122 (267)
Q Consensus 101 ~~~~~a~~rl~~Av~~I~~lL~ 122 (267)
.+.+.+|.++|+.++.
T Consensus 71 ------~e~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 71 ------EKNTEAARDAILRIVG 86 (97)
T ss_dssp ------HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHH
Confidence 2577888888888764
No 22
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.11 E-value=1.7e-06 Score=68.22 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=54.4
Q ss_pred eEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecC
Q psy1580 22 VTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFA 101 (267)
Q Consensus 22 ~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~ 101 (267)
....|.||. .++|+||||+|.++|+|+++|||+|.|--.|+ ++=.|.|++..
T Consensus 17 ~~~~i~Ip~------~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~----------------------~~~~V~I~G~~ 68 (104)
T 2ctk_A 17 VTIEVEVPF------DLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL----------------------QSDIIAITGLA 68 (104)
T ss_dssp EEEEEECCH------HHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT----------------------TCCEEEEEECH
T ss_pred EEEEEEECh------HHccceeCCCchHHHHHHHHHCCEEEecCCCC----------------------CcceEEEEcCH
Confidence 667788883 68999999999999999999999999964332 01168888862
Q ss_pred ChhHHHHHHHHHHHHHHHhhcC
Q psy1580 102 PPAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 102 ~~~~a~~rl~~Av~~I~~lL~P 123 (267)
+.+++|.++|+.++..
T Consensus 69 ------e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 69 ------ANLDRAKAGLLERVKE 84 (104)
T ss_dssp ------HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhh
Confidence 5689999999998754
No 23
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.10 E-value=3.3e-06 Score=69.53 Aligned_cols=75 Identities=20% Similarity=0.358 Sum_probs=59.3
Q ss_pred CcceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEE
Q psy1580 19 PIKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEIT 98 (267)
Q Consensus 19 p~k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIs 98 (267)
......+|.||. +++|+|||++|.++|+|+++|||+|.|-..+. |. .++.-.|.|+
T Consensus 82 ~~~~~~~i~vp~------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~---------------~~---~~~~~~v~I~ 137 (163)
T 3krm_A 82 EVKLETHIRVPA------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQT---------------PD---ENDQVIVKII 137 (163)
T ss_dssp CCCEEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCC---------------CC---TTSEEEEEEE
T ss_pred CCceEEEEEcCh------hheeeEEcCCChHHHHHHHHhCCeEEECCCCC---------------CC---CCCceEEEEE
Confidence 345667899983 78999999999999999999999999965432 21 2455578899
Q ss_pred ecCChhHHHHHHHHHHHHHHHhhcC
Q psy1580 99 AFAPPAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 99 a~~~~~~a~~rl~~Av~~I~~lL~P 123 (267)
+. .+.+++|.++|..+|.-
T Consensus 138 G~------~~~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 138 GH------FYASQMAQRKIRDILAQ 156 (163)
T ss_dssp EC------HHHHHHHHHHHHHHHHH
T ss_pred eC------HHHHHHHHHHHHHHHHH
Confidence 94 26799999999998865
No 24
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.96 E-value=1.1e-05 Score=66.01 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=55.0
Q ss_pred EEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecCC
Q psy1580 23 TIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFAP 102 (267)
Q Consensus 23 ~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~~ 102 (267)
+.++.||. +++|+|||++|.++|+|+++|||+|.|--.+. +. ...+-.|.|++.
T Consensus 3 ~~~~~Vp~------~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~-----------------~~-~~~~r~v~I~G~-- 56 (164)
T 2jvz_A 3 VQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGS-----------------QN-TNVDKPLRIIGD-- 56 (164)
T ss_dssp EEEEEECT------TCHHHHTCTTTHHHHHHHHTSCSEEEECCCTT-----------------SS-SSSCEEEEEEEC--
T ss_pred EEEEEech------hheeEEECCChHHHHHHHHHhCCeEEEecCCC-----------------CC-CCCceEEEEEcC--
Confidence 56789984 47999999999999999999999999843221 00 123446788884
Q ss_pred hhHHHHHHHHHHHHHHHhhcCC
Q psy1580 103 PAEAHARIAYALAEVRRFLVPF 124 (267)
Q Consensus 103 ~~~a~~rl~~Av~~I~~lL~P~ 124 (267)
.+.+.+|...|..++...
T Consensus 57 ----~~~v~~A~~~I~~ii~e~ 74 (164)
T 2jvz_A 57 ----PYKVQQACEMVMDILRER 74 (164)
T ss_dssp ----HHHHHHHHHHHHHHTTCS
T ss_pred ----HHHHHHHHHHHHHHHHhc
Confidence 267889999999988753
No 25
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.90 E-value=9.3e-06 Score=66.63 Aligned_cols=71 Identities=27% Similarity=0.379 Sum_probs=54.7
Q ss_pred CCcceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEE
Q psy1580 18 KPIKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEI 97 (267)
Q Consensus 18 kp~k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlI 97 (267)
|+..+..++.||. .++|.|||++|.++|+|+++|||+|.|-..|+ .+-.|.|
T Consensus 1 ~~~~~~~~~~vp~------~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~----------------------~~r~v~I 52 (160)
T 2jzx_A 1 KNVTLTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC----------------------PERIITL 52 (160)
T ss_dssp CCCEEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCSEEEEECCTT----------------------TEEEEEE
T ss_pred CCccEEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEcCCCC----------------------CceEEEE
Confidence 4567788999993 58999999999999999999999999965321 1235778
Q ss_pred EecCChhHHHHHHHHHHHHHHHhhc
Q psy1580 98 TAFAPPAEAHARIAYALAEVRRFLV 122 (267)
Q Consensus 98 sa~~~~~~a~~rl~~Av~~I~~lL~ 122 (267)
++. .+.+.+|...|..++.
T Consensus 53 ~G~------~~~v~~A~~~I~~~i~ 71 (160)
T 2jzx_A 53 AGP------TNAIFKAFAMIIDKLE 71 (160)
T ss_dssp EEE------HHHHHHHHHHHHHHHH
T ss_pred EeC------HHHHHHHHHHHHHHHH
Confidence 875 2567788887776553
No 26
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.85 E-value=1.7e-05 Score=66.14 Aligned_cols=71 Identities=18% Similarity=0.277 Sum_probs=53.8
Q ss_pred eEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecC
Q psy1580 22 VTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFA 101 (267)
Q Consensus 22 ~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~ 101 (267)
...+|.||. +++|+|||++|.++|+|+++|||+|.|-.... + .. ...+=.|.|++.
T Consensus 104 ~~~~i~vp~------~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~---------------~-~~-~~~~~~v~I~G~- 159 (174)
T 1j4w_A 104 QEFNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQRNPP---------------P-NA-DPNMKLFTIRGT- 159 (174)
T ss_dssp CEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEECCCT---------------T-TS-CTTEEEEEEECC-
T ss_pred EEEEEEECh------HHcCeeECCCchHHHHHHHHHCCEEEECCCCC---------------C-CC-CCCceEEEEECC-
Confidence 466888883 67999999999999999999999999976421 0 00 122335888883
Q ss_pred ChhHHHHHHHHHHHHHHHhh
Q psy1580 102 PPAEAHARIAYALAEVRRFL 121 (267)
Q Consensus 102 ~~~~a~~rl~~Av~~I~~lL 121 (267)
.+.+.+|.++|+++|
T Consensus 160 -----~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 160 -----PQQIDYARQLIEEKI 174 (174)
T ss_dssp -----HHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHhC
Confidence 367899999998875
No 27
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.81 E-value=1.4e-05 Score=57.46 Aligned_cols=44 Identities=7% Similarity=-0.026 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCCCCCCcccccc--CCCccccCCCCCCCCCCCCCCC
Q psy1580 151 GGAASCSESSESSVNNPLLYAE--NTSPVENLTPPEYTLVDPAFNR 194 (267)
Q Consensus 151 ~r~~~cg~~~h~~~~cp~~~~~--~~~~c~~cg~~gh~t~dc~~~~ 194 (267)
..|-+||+.+|.+.+||..... ....|-.||+.||+++||+.+.
T Consensus 5 ~~C~~Cg~~GH~a~~C~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp TBCSSSCCBTCCGGGCTTTTSSSCCCSBCTTTCCBSSCGGGCCCCC
T ss_pred CcccccCCCCeehhhCcCCcCCCCCCCeeCCCCCCCCCcCCCcCCC
Confidence 4578999999999999985332 2468999999999999999875
No 28
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.79 E-value=2.1e-05 Score=51.74 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCCCCCccccccCCCccccCCCCCCCCCCCC
Q psy1580 152 GAASCSESSESSVNNPLLYAENTSPVENLTPPEYTLVDPA 191 (267)
Q Consensus 152 r~~~cg~~~h~~~~cp~~~~~~~~~c~~cg~~gh~t~dc~ 191 (267)
.|-+||+.||.+.+||..- ...|-.||..||+.+||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~~---~~~C~~Cg~~GH~~~~C~ 38 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQPR---QEGCWNCGSKEHRFAQCP 38 (39)
T ss_dssp BCTTTCCBSSCTTTCCSCC---CSSCTTTCCSSSCTTTSC
T ss_pred eeeccCCCCcccccCCCCC---CCccccCCCCCCccCcCc
Confidence 4678999999999999741 357999999999999997
No 29
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.76 E-value=2e-05 Score=65.72 Aligned_cols=69 Identities=26% Similarity=0.306 Sum_probs=53.6
Q ss_pred EEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecCC
Q psy1580 23 TIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFAP 102 (267)
Q Consensus 23 ~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~~ 102 (267)
+.++.||. +++|+|||++|.++|+|+++|||+|.|-.. + + ...+-.|.|++.
T Consensus 4 ~~~~~vp~------~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~----~------------~----~~~~r~v~I~G~-- 55 (174)
T 1j4w_A 4 MIDVPIPR------FAVGIVIGRNGEMIKKIQNDAGVRIQFKPD----D------------G----TTPERIAQITGP-- 55 (174)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEEECC----T------------T----SCSEEEEEEEEC--
T ss_pred EEEEEECh------hheeeeecCCchHHHHHHHHhCCEEEEecC----C------------C----CCCccEEEEEeC--
Confidence 45788884 589999999999999999999999999532 1 0 123346788875
Q ss_pred hhHHHHHHHHHHHHHHHhhcC
Q psy1580 103 PAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 103 ~~~a~~rl~~Av~~I~~lL~P 123 (267)
.+.+.+|+++|..+|..
T Consensus 56 ----~~~v~~A~~~I~~~~~~ 72 (174)
T 1j4w_A 56 ----PDRAQHAAEIITDLLRS 72 (174)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHh
Confidence 26788999999988764
No 30
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.75 E-value=1.9e-05 Score=51.45 Aligned_cols=35 Identities=9% Similarity=-0.041 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCCCCCccccccCCCccccCCCCCCCCCCCC
Q psy1580 152 GAASCSESSESSVNNPLLYAENTSPVENLTPPEYTLVDPA 191 (267)
Q Consensus 152 r~~~cg~~~h~~~~cp~~~~~~~~~c~~cg~~gh~t~dc~ 191 (267)
.|-+||+.||.+.+||.. ..|-.||..||+.+||+
T Consensus 2 ~C~~Cg~~GH~~~~C~~~-----~~C~~Cg~~GH~a~~C~ 36 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP-----KVCFKCKQPGHFSKQCR 36 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB-----TTCSSCCCTTGGGGTTC
T ss_pred cccccCCCCcchhhCcCc-----CeEccCCCcCCccCcCc
Confidence 467899999999999975 57999999999999997
No 31
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.74 E-value=2.5e-05 Score=53.86 Aligned_cols=41 Identities=5% Similarity=-0.097 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCccccCCCCCCCCCCCCCCC
Q psy1580 151 GGAASCSESSESSVNNPLLYAENTSPVENLTPPEYTLVDPAFNR 194 (267)
Q Consensus 151 ~r~~~cg~~~h~~~~cp~~~~~~~~~c~~cg~~gh~t~dc~~~~ 194 (267)
..|-+||+.||.+.+||..- ...|-.||..||+.+||+.+.
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~~---~~~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAPR---RQGCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCSS---CCSCSSSCCSSCCGGGCCSSC
T ss_pred CeeeecCCCCcChhhCcCCC---CCeeCcCCCcCCccCCCcCCC
Confidence 46789999999999999842 256999999999999999764
No 32
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.70 E-value=2e-05 Score=64.60 Aligned_cols=70 Identities=24% Similarity=0.417 Sum_probs=54.7
Q ss_pred eEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecC
Q psy1580 22 VTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFA 101 (267)
Q Consensus 22 ~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~ 101 (267)
...++.||. +++|+|||++|.++|+|+++|||+|.|.+.. .| ...+=.|.|++.
T Consensus 89 ~~~~i~vp~------~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~---------------~~----~~~~~~v~I~G~- 142 (160)
T 2jzx_A 89 VTLRLVVPA------SQCGSLIGKGGCKIKEIRESTGAQVQVAGDM---------------LP----NSTERAITIAGI- 142 (160)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHSSEECCCCCC---------------ST----TCCEEEEEEEEC-
T ss_pred EEEEEEECh------hheeeEECCCCHHHHHHHHHhCCeEEECCCC---------------CC----CCCceEEEEEcC-
Confidence 567889983 7999999999999999999999999996521 01 123456888884
Q ss_pred ChhHHHHHHHHHHHHHHHhhc
Q psy1580 102 PPAEAHARIAYALAEVRRFLV 122 (267)
Q Consensus 102 ~~~~a~~rl~~Av~~I~~lL~ 122 (267)
.+.+.+|+++|..+|.
T Consensus 143 -----~~~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 143 -----PQSIIECVKQICVVML 158 (160)
T ss_dssp -----HHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHh
Confidence 3678899999988763
No 33
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.69 E-value=2.9e-05 Score=63.50 Aligned_cols=69 Identities=25% Similarity=0.278 Sum_probs=53.4
Q ss_pred EEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecCC
Q psy1580 23 TIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFAP 102 (267)
Q Consensus 23 ~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~~ 102 (267)
+.+|.||. +++|+|||++|.++|+|+++|||+|.|-.... ...+=.|.|++.
T Consensus 92 ~~~i~vp~------~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~--------------------~~~~~~v~I~G~-- 143 (164)
T 2jvz_A 92 GIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG--------------------TGPEKIAHIMGP-- 143 (164)
T ss_dssp SBCCEEET------TTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT--------------------TSSEEEEEEESC--
T ss_pred eEEEEECh------hhccccCCCCcHhHHHHHHHHCCeEEEeCCCC--------------------CCCcEEEEEEcC--
Confidence 35677773 68999999999999999999999999975320 022346788875
Q ss_pred hhHHHHHHHHHHHHHHHhhcC
Q psy1580 103 PAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 103 ~~~a~~rl~~Av~~I~~lL~P 123 (267)
.+.+.+|..+|+.+|..
T Consensus 144 ----~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 144 ----PDRCEHAARIINDLLQS 160 (164)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHhh
Confidence 26889999999988754
No 34
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.69 E-value=3.6e-05 Score=64.29 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=55.1
Q ss_pred ceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEec
Q psy1580 21 KVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAF 100 (267)
Q Consensus 21 k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~ 100 (267)
..+.+|.||. .++|+|||++|.++|+|+++|||+|.|--.+... |+ ..+=-|.|++.
T Consensus 5 ~~~~~i~vp~------~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~-------------~~----~~er~v~I~G~ 61 (178)
T 2anr_A 5 QYFLKVLIPS------YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY-------------PG----TTERVCLIQGT 61 (178)
T ss_dssp CEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC-------------TT----SSEEEEEEEEC
T ss_pred CEEEEEEECh------hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC-------------CC----CCCceEEEEeC
Confidence 4567889984 5899999999999999999999999996432111 11 11224778875
Q ss_pred CChhHHHHHHHHHHHHHHHhhcC
Q psy1580 101 APPAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 101 ~~~~~a~~rl~~Av~~I~~lL~P 123 (267)
.+.+.+|.++|..++.-
T Consensus 62 ------~~~v~~A~~~I~~~~~~ 78 (178)
T 2anr_A 62 ------IEALNAVHGFIAEKIRE 78 (178)
T ss_dssp ------HHHHHHHHHHHHHHHTC
T ss_pred ------HHHHHHHHHHHHHHHhc
Confidence 25788999999988865
No 35
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.69 E-value=1.7e-05 Score=66.25 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=55.5
Q ss_pred ceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEec
Q psy1580 21 KVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAF 100 (267)
Q Consensus 21 k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~ 100 (267)
..+.+|.||. +++|+|||++|.++|+|+++|||+|.|-.... .+ ...+=.|.|++.
T Consensus 103 ~~~~~i~Vp~------~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~--------------~~----~~~~~~v~I~G~ 158 (178)
T 2anr_A 103 ANQVKIIVPN------STAGLIIGKGGATVKAIMEQSGAWVQLSQKPD--------------GI----NLQNRVVTVSGE 158 (178)
T ss_dssp GGEEEEEEEH------HHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----------------------CCEEEEEEESS
T ss_pred ceEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEeCCCC--------------CC----CCCceEEEEEcC
Confidence 3567889983 69999999999999999999999999965421 01 112345778875
Q ss_pred CChhHHHHHHHHHHHHHHHhhcC
Q psy1580 101 APPAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 101 ~~~~~a~~rl~~Av~~I~~lL~P 123 (267)
.+.+.+|+.+|..+|.-
T Consensus 159 ------~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 159 ------PEQNRKAVELIIQKIQE 175 (178)
T ss_dssp ------HHHHHHHHHHHHHHHHS
T ss_pred ------HHHHHHHHHHHHHHHHh
Confidence 26889999999998754
No 36
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.66 E-value=1.8e-05 Score=61.59 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=53.0
Q ss_pred eEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhh-CceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEec
Q psy1580 22 VTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDT-MTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAF 100 (267)
Q Consensus 22 ~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eT-gcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~ 100 (267)
.+..|.||. .|++.||||+|.++|+|+++| ||+|.|--.|+. .--|.|.+.
T Consensus 17 vt~~i~Ip~------~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~----------------------~~~V~I~G~ 68 (95)
T 2ctj_A 17 AEVEVSIPA------KLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSG----------------------SDTVVIRGP 68 (95)
T ss_dssp CCEEEECCH------HHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTT----------------------CCEEEEESC
T ss_pred EEEEEEECH------HHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCC----------------------cceEEEEcC
Confidence 456788884 478899999999999999999 999988543320 114888885
Q ss_pred CChhHHHHHHHHHHHHHHHhhcCC
Q psy1580 101 APPAEAHARIAYALAEVRRFLVPF 124 (267)
Q Consensus 101 ~~~~~a~~rl~~Av~~I~~lL~P~ 124 (267)
+ ..+++|+++|+.|+..+
T Consensus 69 ~------~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 69 S------SDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp H------HHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHHhhh
Confidence 3 48899999999987543
No 37
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=97.66 E-value=3.8e-05 Score=57.67 Aligned_cols=42 Identities=5% Similarity=-0.017 Sum_probs=36.0
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCccccCCCCCCCCCCCCCCC
Q psy1580 151 GGAASCSESSESSVNNPLLYAENTSPVENLTPPEYTLVDPAFNR 194 (267)
Q Consensus 151 ~r~~~cg~~~h~~~~cp~~~~~~~~~c~~cg~~gh~t~dc~~~~ 194 (267)
..|-+||+.||.+.+||... ....|-.||..||+.+||+.+.
T Consensus 25 ~~C~~Cg~~GH~a~~C~~~~--~~~~C~~Cg~~GH~ar~Cp~~~ 66 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKLPP--QPKKCHFCQSISHMVASCPLKA 66 (74)
T ss_dssp SCCTTTCCSSSCTTTCSSCC--CCCCCTTTCCTTSCGGGCTTGG
T ss_pred CcccccCCcCcCcccCCCCC--CCCccCCcCCcCCccCcCcCCc
Confidence 45889999999999999742 2367999999999999999875
No 38
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.57 E-value=6.7e-05 Score=54.30 Aligned_cols=42 Identities=5% Similarity=-0.017 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCccccCCCCCCCCCCCCCCC
Q psy1580 151 GGAASCSESSESSVNNPLLYAENTSPVENLTPPEYTLVDPAFNR 194 (267)
Q Consensus 151 ~r~~~cg~~~h~~~~cp~~~~~~~~~c~~cg~~gh~t~dc~~~~ 194 (267)
..|-+||+.||.+.+||..- ....|-.||..||+.+||+.+.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~~--~~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLPP--QPKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSCC--CSSCCTTTCCSSSCTTTCTGGG
T ss_pred CcccccCCCCcChhhCCCCC--CCCccCCcCCcCCccCcCCCcc
Confidence 35789999999999999742 3467999999999999999864
No 39
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=97.56 E-value=4.6e-05 Score=63.74 Aligned_cols=45 Identities=7% Similarity=-0.010 Sum_probs=37.6
Q ss_pred CCCCCCCCCCCCCCCCCccccccCCCccccCCCCCCCCCCCCCCCcc
Q psy1580 150 DGGAASCSESSESSVNNPLLYAENTSPVENLTPPEYTLVDPAFNRIQ 196 (267)
Q Consensus 150 t~r~~~cg~~~h~~~~cp~~~~~~~~~c~~cg~~gh~t~dc~~~~~~ 196 (267)
..+|-+||..||.+-+||..-. ...|-.||..||+.+||+.+-.+
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~~~~--~~~C~~Cg~~GH~~r~Cp~~~~~ 141 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKLPPQ--PKKCHFCQSINHMVASCPLKAQQ 141 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCSCCC--CCCCTTTCCSSCCGGGCTTTTC-
T ss_pred CCcccEeCCccchhhhCCCCCC--CCcccccCCcCCEeccCcCCCCC
Confidence 5679999999999999997322 35799999999999999987544
No 40
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=97.56 E-value=3.9e-05 Score=54.59 Aligned_cols=43 Identities=5% Similarity=-0.150 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCCcccccc-----CCCccccCCCCCCCCCCCCCCCc
Q psy1580 153 AASCSESSESSVNNPLLYAE-----NTSPVENLTPPEYTLVDPAFNRI 195 (267)
Q Consensus 153 ~~~cg~~~h~~~~cp~~~~~-----~~~~c~~cg~~gh~t~dc~~~~~ 195 (267)
|-+||+.||.+.+||..... ....|-.||..||+++||+...-
T Consensus 4 Cf~Cg~~GH~a~~C~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~~ 51 (60)
T 1cl4_A 4 CFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSKTD 51 (60)
T ss_dssp -------------------------CCCSCSSCSSCSSCSTTCCCTTS
T ss_pred cccCCCCCcCHhhCcCCCCCccccCCCcceeECCCCCCccCcCCCccc
Confidence 67899999999999984321 34679999999999999998753
No 41
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.46 E-value=0.0001 Score=60.55 Aligned_cols=70 Identities=23% Similarity=0.254 Sum_probs=51.9
Q ss_pred EEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecCC
Q psy1580 23 TIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFAP 102 (267)
Q Consensus 23 ~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~~ 102 (267)
+.++.||. .++|.|||++|.++|+|+++|||+|.|--.+. | ...+--|.|++.
T Consensus 4 ~~~~~ip~------~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~---------------~----~~~~r~v~I~G~-- 56 (163)
T 3krm_A 4 MVQVFIPA------QAVGAIIGKKGQHIKQLSRFASASIKIAPPET---------------P----DSKVRMVIITGP-- 56 (163)
T ss_dssp EEEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCEEEECCCSS---------------T----TCSEEEEEEEEC--
T ss_pred EEEEEech------hhcceeECCCcHHHHHHHHHHCCeEEEcCCCC---------------C----CCCceEEEEEcC--
Confidence 45788883 58999999999999999999999999975431 1 123345788884
Q ss_pred hhHHHHHHHHHHHHHHHhhcC
Q psy1580 103 PAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 103 ~~~a~~rl~~Av~~I~~lL~P 123 (267)
.+.+.+|...|..++..
T Consensus 57 ----~e~v~~A~~~I~~~~~e 73 (163)
T 3krm_A 57 ----PEAQFKAQGRIYGKLKE 73 (163)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHhc
Confidence 25677888787776643
No 42
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.45 E-value=6.5e-05 Score=58.71 Aligned_cols=66 Identities=9% Similarity=0.120 Sum_probs=51.4
Q ss_pred CcceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCce-EEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEE
Q psy1580 19 PIKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTR-MAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEI 97 (267)
Q Consensus 19 p~k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcK-I~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlI 97 (267)
.-.....+.||. .++|.+|||+|.+.|+|+++||++ |.|-- ++=.|.|
T Consensus 12 ~~~~i~~i~I~~------dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-------------------------ddG~V~I 60 (91)
T 2cpq_A 12 AAAFHEEFVVRE------DLMGLAIGTHGSNIQQARKVPGVTAIELDE-------------------------DTGTFRI 60 (91)
T ss_dssp SCSEEEEEECCH------HHHHHHHTTTTHHHHHHHTSTTEEEEEEET-------------------------TTTEEEE
T ss_pred cCceEEEEEECh------HHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-------------------------CCCEEEE
Confidence 344667788883 589999999999999999999998 99921 1125888
Q ss_pred EecCChhHHHHHHHHHHHHHHHh
Q psy1580 98 TAFAPPAEAHARIAYALAEVRRF 120 (267)
Q Consensus 98 sa~~~~~~a~~rl~~Av~~I~~l 120 (267)
.+.+. +.+++|.++|+.+
T Consensus 61 ~g~~~-----ea~~~A~~~I~~i 78 (91)
T 2cpq_A 61 YGESA-----DAVKKARGFLEFV 78 (91)
T ss_dssp EESSH-----HHHHHHHHHHSCC
T ss_pred EECCH-----HHHHHHHHHHHhh
Confidence 88663 6778898888764
No 43
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.42 E-value=8.5e-05 Score=51.92 Aligned_cols=41 Identities=7% Similarity=-0.064 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCccccCCCCCCCCCCCCCCC
Q psy1580 151 GGAASCSESSESSVNNPLLYAENTSPVENLTPPEYTLVDPAFNR 194 (267)
Q Consensus 151 ~r~~~cg~~~h~~~~cp~~~~~~~~~c~~cg~~gh~t~dc~~~~ 194 (267)
..|-+||..||.+.+||..- ...|-.||..||+.+||+.+.
T Consensus 13 ~~C~~Cg~~GH~a~~C~~~~---~~~C~~Cg~~GH~~~~C~~~~ 53 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRAPR---KKGCWKCGKEGHQMKDCTERQ 53 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSCS---CCBCTTTCCBSSCGGGCSSSC
T ss_pred cceeeeCCCCcChhhcCCCC---CCEeCCCCCcCCccCCCcCcC
Confidence 45889999999999999742 256999999999999998753
No 44
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.00015 Score=55.54 Aligned_cols=44 Identities=18% Similarity=0.024 Sum_probs=35.3
Q ss_pred CCCCCCCCCCCCCCCCccc---cc--------------cCCCccccCCCCCCCCCCCCCCC
Q psy1580 151 GGAASCSESSESSVNNPLL---YA--------------ENTSPVENLTPPEYTLVDPAFNR 194 (267)
Q Consensus 151 ~r~~~cg~~~h~~~~cp~~---~~--------------~~~~~c~~cg~~gh~t~dc~~~~ 194 (267)
..|.+||+.||.+.+||+. |. ...+.|-.||..||+.+||+.++
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGGTCCCCBC-------------CCCBCSSSSCBSSCGGGCSSCC
T ss_pred CCCCCCCCCCCccccCCCcccccccccCCcccccccCCCCCCeecccCCCCcCcccCCccc
Confidence 3578999999999999962 11 13468999999999999999986
No 45
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.21 E-value=0.00037 Score=60.77 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=43.5
Q ss_pred eeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecCChhHHHHHHHHHHHHH
Q psy1580 38 FVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFAPPAEAHARIAYALAEV 117 (267)
Q Consensus 38 FvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~~~~~a~~rl~~Av~~I 117 (267)
.+|||||+.|.|.|.||..|||+|.|-|+ .|.|.+. ++.++.|...|
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~~---------------------------~v~i~G~------~~~i~~Ar~~i 154 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGEY---------------------------EVAIIGD------YERAMAAKQAI 154 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECSS---------------------------EEEEEEE------HHHHHHHHHHH
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcCC---------------------------EEEEEeC------hHHHHHHHHHH
Confidence 68999999999999999999999999652 2455553 46788888889
Q ss_pred HHhhcC
Q psy1580 118 RRFLVP 123 (267)
Q Consensus 118 ~~lL~P 123 (267)
+.++.-
T Consensus 155 ~~li~g 160 (191)
T 1tua_A 155 EMLAEG 160 (191)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 988864
No 46
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.07 E-value=0.00031 Score=62.20 Aligned_cols=53 Identities=19% Similarity=0.359 Sum_probs=44.5
Q ss_pred eeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecCChhHHHHHHHHHHHHH
Q psy1580 38 FVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFAPPAEAHARIAYALAEV 117 (267)
Q Consensus 38 FvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~~~~~a~~rl~~Av~~I 117 (267)
.+|+|||+.|.|+|.||..|||+|.|-|+ -|.|.+. ...++.|...|
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~~---------------------------~v~i~G~------~~~i~~A~~~i 185 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYGK---------------------------TVAIIGN------PIQIEIAKTAI 185 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEETT---------------------------EEEEEEC------HHHHHHHHHHH
T ss_pred hhheeECCCchHHHHHHHHhCceEEECCe---------------------------EEEEEeC------HHHHHHHHHHH
Confidence 59999999999999999999999999531 1667764 57788999999
Q ss_pred HHhhcC
Q psy1580 118 RRFLVP 123 (267)
Q Consensus 118 ~~lL~P 123 (267)
+.++.-
T Consensus 186 ~~li~g 191 (219)
T 2e3u_A 186 EKLARG 191 (219)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 999854
No 47
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.00097 Score=53.27 Aligned_cols=42 Identities=14% Similarity=-0.047 Sum_probs=33.1
Q ss_pred CCCCCCCCCCCCCCCCccccc-----------------cCCCccccCCCCCCCCCCCCC
Q psy1580 151 GGAASCSESSESSVNNPLLYA-----------------ENTSPVENLTPPEYTLVDPAF 192 (267)
Q Consensus 151 ~r~~~cg~~~h~~~~cp~~~~-----------------~~~~~c~~cg~~gh~t~dc~~ 192 (267)
..|.+||+.||.+.+||.... ...+.|-.||..||+++||+.
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~~~~~y~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CSSSSSCSSCCCTTTCCCSTTSCCSSSCCCCCCCSCCCCCCCCTTTTSSSCTTTTTSCC
T ss_pred ccCCCCCcCCcchhhCCCccccccccCccccccccccCCCCCCcCCCCCCCcCcccCcC
Confidence 457889999999999997321 135689999999999999985
No 48
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=96.56 E-value=0.00074 Score=68.11 Aligned_cols=62 Identities=24% Similarity=0.319 Sum_probs=48.5
Q ss_pred EEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecCC
Q psy1580 23 TIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFAP 102 (267)
Q Consensus 23 ~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~~ 102 (267)
...+-||. ..+|.||||+|.++|.|+++|||+|.|--. =.|.|.+.+.
T Consensus 568 ~~~~~I~~------~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~--------------------------G~V~I~~~~~ 615 (630)
T 3u1k_A 568 VETVQVPL------SKRAKFVGPGGYNLKKLQAETGVTISQVDE--------------------------ETFSVFAPTP 615 (630)
T ss_dssp EEEEECCH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSS--------------------------SEEEEEESSH
T ss_pred EEEEEeCh------hHhheeECCCChhHHHHHHHHCCEEEEcCC--------------------------cEEEEEeCCH
Confidence 45677773 589999999999999999999999988421 2478888764
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q psy1580 103 PAEAHARIAYALAEVRRFL 121 (267)
Q Consensus 103 ~~~a~~rl~~Av~~I~~lL 121 (267)
+.+++|++.|+.|+
T Consensus 616 -----~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 616 -----SAMHEARDFITEIC 629 (630)
T ss_dssp -----HHHHHHHHHTTC--
T ss_pred -----HHHHHHHHHHHHHh
Confidence 67889999998775
No 49
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0024 Score=50.95 Aligned_cols=42 Identities=7% Similarity=-0.027 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCccccCCCCCCCCCCCCCCC
Q psy1580 151 GGAASCSESSESSVNNPLLYAENTSPVENLTPPEYTLVDPAFNR 194 (267)
Q Consensus 151 ~r~~~cg~~~h~~~~cp~~~~~~~~~c~~cg~~gh~t~dc~~~~ 194 (267)
..|-+|++.||.+.+||... ....|..||..||+++||+...
T Consensus 43 ~~C~~Cg~~GH~~~~C~~~~--~~~~C~~Cg~~GH~~~~Cp~~~ 84 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPHKW--KKVQCTLCKSKKHSKERCPSIW 84 (124)
T ss_dssp SCSSSSSCSSSSTTTSCCCC--CCCSSSSSCSSCCCTTTCCCST
T ss_pred ccccccCCCCCccccCcCcc--cCccCCCCCcCCcchhhCCCcc
Confidence 35777888888888888642 1256888999999999998753
No 50
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=96.08 E-value=0.0055 Score=50.37 Aligned_cols=71 Identities=23% Similarity=0.284 Sum_probs=52.3
Q ss_pred EEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCc-eEEEeeccccCCcchhhhhhcCCCCccCCCCCc-cEEEEEecC
Q psy1580 24 IRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMT-RMAILGRGSIRDRHKEEELRISGDPKFLHLLEE-LHVEITAFA 101 (267)
Q Consensus 24 eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgc-KI~IRGrGS~kd~~ke~elr~sgdp~~~hl~Ep-LHVlIsa~~ 101 (267)
..|.||. +.+|++||-+|.|+|.+++.||| +|.|.+..... .+ ..+. --|.|++.
T Consensus 69 ~~v~Vp~------~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~------------~~----~~~~~~~vtI~G~- 125 (144)
T 2qnd_A 69 DVIQVPR------NLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN------------VP----QEEGMVPFVFVGT- 125 (144)
T ss_dssp EEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC------------CC----CCTTEEEEEEEEE-
T ss_pred EEEEECH------HHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC------------cc----ccCCeeEEEEEeC-
Confidence 5667773 68899999999999999999997 99998753110 01 1222 23677775
Q ss_pred ChhHHHHHHHHHHHHHHHhhc
Q psy1580 102 PPAEAHARIAYALAEVRRFLV 122 (267)
Q Consensus 102 ~~~~a~~rl~~Av~~I~~lL~ 122 (267)
.+.++.|..+|+..|.
T Consensus 126 -----~~~v~~Ak~li~~~l~ 141 (144)
T 2qnd_A 126 -----KDSIANATVLLDYHLN 141 (144)
T ss_dssp -----HHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHH
Confidence 3788999999988775
No 51
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=95.89 E-value=0.0046 Score=54.71 Aligned_cols=69 Identities=23% Similarity=0.180 Sum_probs=49.7
Q ss_pred EEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecCC
Q psy1580 23 TIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFAP 102 (267)
Q Consensus 23 ~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~~ 102 (267)
..+|.||. ..+|.||||.|.|.+.|+++|||+|.|--. + =-|.|.+.+.
T Consensus 35 i~~i~IP~------~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~----~---------------------g~V~I~~~~~ 83 (219)
T 2e3u_A 35 EEYVKIPK------DRIAVLIGKKGQTKKEIEKRTKTKITIDSE----T---------------------GEVWITSTKE 83 (219)
T ss_dssp EEEEECCH------HHHHHHHCGGGHHHHHHHHHHTEEEEECTT----T---------------------CEEEEEECTT
T ss_pred EEEEEeCH------HHhhhhhcccHHHHHHHHHHHCcEEEEEcC----C---------------------CEEEEecCCC
Confidence 45788883 689999999999999999999999999411 0 1245555331
Q ss_pred hhHHHHHHHHHHHHHHHhhcC
Q psy1580 103 PAEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 103 ~~~a~~rl~~Av~~I~~lL~P 123 (267)
. ..-..+.+|.+.|+.+...
T Consensus 84 t-~d~~~i~kA~~~I~~i~rg 103 (219)
T 2e3u_A 84 T-EDPLAVWKARDIVLAIGRG 103 (219)
T ss_dssp C-CSHHHHHHHHHHHHHHHTT
T ss_pred C-CCHHHHHHHHHHHHHHhcc
Confidence 0 0125788999999998843
No 52
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=95.07 E-value=0.05 Score=42.47 Aligned_cols=64 Identities=13% Similarity=0.267 Sum_probs=47.1
Q ss_pred eEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHh-hCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEec
Q psy1580 22 VTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQED-TMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAF 100 (267)
Q Consensus 22 ~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~e-TgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~ 100 (267)
.+.+|.||.+ |-+.|||++|.++|+|+++ +++.|.+=. +++ -|.|++.
T Consensus 27 ~t~~i~vp~~------~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~------------------------~~~-~ItI~G~ 75 (102)
T 2ctf_A 27 TVSSVAAPSW------LHRFIIGKKGQNLAKITQQMPKVHIEFTE------------------------GED-KITLEGP 75 (102)
T ss_dssp EEEEEECCST------THHHHHTTTTCHHHHHHHHCSSSEEEECS------------------------SSC-EEEEEEC
T ss_pred EEEEEEeCHH------HHhhhcCCCCccHHHHHHHcCCcEEEeCC------------------------CCC-EEEEECC
Confidence 6778899955 5678999999999999997 588775432 011 3777775
Q ss_pred CChhHHHHHHHHHHHHHHHhhc
Q psy1580 101 APPAEAHARIAYALAEVRRFLV 122 (267)
Q Consensus 101 ~~~~~a~~rl~~Av~~I~~lL~ 122 (267)
.+.|++|.++|+.++.
T Consensus 76 ------~~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 76 ------TEDVSVAQEQIEGMVK 91 (102)
T ss_dssp ------HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHH
Confidence 3678888888877764
No 53
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=95.05 E-value=0.019 Score=38.44 Aligned_cols=25 Identities=8% Similarity=-0.145 Sum_probs=20.8
Q ss_pred CCccccCCCCCCCCCCCCCCCccCC
Q psy1580 174 TSPVENLTPPEYTLVDPAFNRIQPA 198 (267)
Q Consensus 174 ~~~c~~cg~~gh~t~dc~~~~~~~~ 198 (267)
..+|-+||+.||.++||+.+.....
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~~~~r 34 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKPRGPR 34 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCCCTT
T ss_pred CCeeeECCCCCcchhhCcCCcccCC
Confidence 4689999999999999999765443
No 54
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=94.96 E-value=0.046 Score=52.11 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=58.0
Q ss_pred cCCCCCcceEEEEEecCCCCCCCCeeeEEeCCCc--chHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCC
Q psy1580 14 ITRDKPIKVTIRVIVPVRDHPKFNFVGKLLGPKG--NSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLE 91 (267)
Q Consensus 14 ~~~~kp~k~~eKI~IPvkeyP~~NFvGrILGPrG--~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~E 91 (267)
+-+.++-+.+.++.||. .|.+.|||.+| +++++|.+||||+|.+=-.++-+.. . + ..
T Consensus 22 ~le~~~~~VTl~v~Ip~------~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~---------~-~-----~k 80 (376)
T 3n89_A 22 MIEINPTRVTLNMEFES------QYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTT---------P-D-----PF 80 (376)
T ss_dssp CCCCCTTEEEEEEECCG------GGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSS---------C-C-----TT
T ss_pred EEEecCCEEEEEEEEch------hhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccC---------C-c-----CC
Confidence 34566778888999994 57778999999 9999999999999999544311100 0 0 01
Q ss_pred ccEEEEEecCChhHHHHHHHHHHHHHHHh
Q psy1580 92 ELHVEITAFAPPAEAHARIAYALAEVRRF 120 (267)
Q Consensus 92 pLHVlIsa~~~~~~a~~rl~~Av~~I~~l 120 (267)
.==|.|++. .+.+++|.+.|..+
T Consensus 81 s~~VtItG~------~enVE~AR~~I~~l 103 (376)
T 3n89_A 81 AQQVTITGY------FGDVDRARMLMRRN 103 (376)
T ss_dssp TTEEEEEEE------HHHHHHHHHHHHHS
T ss_pred CCeEEEEcC------HHHHHHHHHHHHhc
Confidence 113888886 47888999998885
No 55
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=94.65 E-value=0.042 Score=39.26 Aligned_cols=31 Identities=6% Similarity=-0.181 Sum_probs=23.9
Q ss_pred ccccCCCccccCCCCCCCCCCCCCCCccCCc
Q psy1580 169 LYAENTSPVENLTPPEYTLVDPAFNRIQPAT 199 (267)
Q Consensus 169 ~~~~~~~~c~~cg~~gh~t~dc~~~~~~~~~ 199 (267)
.......+|..||+.||..+||+.+......
T Consensus 18 ~~~~~~~~C~~Cge~GH~ardCp~~~~~~~~ 48 (56)
T 1u6p_A 18 RSQLDRDQCAYCKEKGHWAKDCPKKPRGPRG 48 (56)
T ss_dssp STTCCTTBCSSSCCBSSCGGGCTTCCCSSCS
T ss_pred CCCCCCCcceeCCCCCcccccCcCCccccCC
Confidence 3445557899999999999999997644433
No 56
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=94.41 E-value=0.0074 Score=61.86 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=9.8
Q ss_pred EEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecCCh
Q psy1580 24 IRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFAPP 103 (267)
Q Consensus 24 eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~~~ 103 (267)
..+-||. ..+|.+|||+|.++|.|+++||++|.|--.| .|.|.+.+
T Consensus 572 ~~~~i~~------~ki~~vig~gg~~i~~i~~~tg~~idi~ddG--------------------------~v~I~~~~-- 617 (726)
T 4aid_A 572 ETINIPT------DKIREVIGSGGKVIREIVATTGAKVDINDDG--------------------------VVKVSASD-- 617 (726)
T ss_dssp --------------------------------------------------------------------------CCSC--
T ss_pred EEEeCCH------HHHHhhcCCCchhHHHHHHHHCCceeEECCc--------------------------eEEEEeCC--
Confidence 4566663 4789999999999999999999999875433 24455554
Q ss_pred hHHHHHHHHHHHHHHHhhcC
Q psy1580 104 AEAHARIAYALAEVRRFLVP 123 (267)
Q Consensus 104 ~~a~~rl~~Av~~I~~lL~P 123 (267)
.+.+++|++.|+.|+..
T Consensus 618 ---~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 618 ---GAKIKAAIDWIKSITDE 634 (726)
T ss_dssp ---HHHHHHHHHC-------
T ss_pred ---HHHHHHHHHHHHHHhhh
Confidence 36778888888888754
No 57
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=94.39 E-value=0.022 Score=34.38 Aligned_cols=20 Identities=5% Similarity=-0.285 Sum_probs=17.0
Q ss_pred CccccCCCCCCCCCCCCCCC
Q psy1580 175 SPVENLTPPEYTLVDPAFNR 194 (267)
Q Consensus 175 ~~c~~cg~~gh~t~dc~~~~ 194 (267)
..|-.||..||+++||+..+
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 46999999999999999764
No 58
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=94.36 E-value=0.022 Score=42.51 Aligned_cols=36 Identities=6% Similarity=-0.106 Sum_probs=19.2
Q ss_pred CCCCCCCCCccccc-------cCCCccccCCCCCCCCCCCCCC
Q psy1580 158 ESSESSVNNPLLYA-------ENTSPVENLTPPEYTLVDPAFN 193 (267)
Q Consensus 158 ~~~h~~~~cp~~~~-------~~~~~c~~cg~~gh~t~dc~~~ 193 (267)
++||.+-+|+.... .....|-.||+.||+++||+..
T Consensus 1 ~~gh~~rdc~~~~~~~~~~~~~r~~~C~~Cg~~GH~a~~C~~~ 43 (74)
T 2li8_A 1 SSGLVPRGSHMPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLP 43 (74)
T ss_dssp -----------CCCCCCCSCCSTTSCCTTTCCSSSCTTTCSSC
T ss_pred CCccccCcCCCCCcCccccccCCCCcccccCCcCcCcccCCCC
Confidence 47899999997322 2345899999999999999863
No 59
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=93.68 E-value=0.012 Score=48.35 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=27.7
Q ss_pred eEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhC
Q psy1580 22 VTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTM 58 (267)
Q Consensus 22 ~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTg 58 (267)
.++++.||. .++|.+||++|.++|+|++++|
T Consensus 4 ~~~~~~Vp~------~~vG~~IG~~G~~I~~i~~e~g 34 (144)
T 2qnd_A 4 FHEQFIVRE------DLMGLAIGTHGANIQQARKVPG 34 (144)
T ss_dssp CEEEEECCG------GGHHHHHCGGGHHHHHHHTSTT
T ss_pred eEEEEEECC------cceeeEECCChhHHHHHHHHHC
Confidence 467888884 5899999999999999999999
No 60
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=91.74 E-value=0.082 Score=32.48 Aligned_cols=19 Identities=5% Similarity=-0.305 Sum_probs=16.5
Q ss_pred CccccCCCCCCCCCCCCCC
Q psy1580 175 SPVENLTPPEYTLVDPAFN 193 (267)
Q Consensus 175 ~~c~~cg~~gh~t~dc~~~ 193 (267)
++|-.||..||+.+||+.-
T Consensus 7 ~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSS
T ss_pred CEEEECCccccCHhHCccc
Confidence 6799999999999999854
No 61
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=90.12 E-value=0.064 Score=46.62 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=34.4
Q ss_pred cceEEEEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEee
Q psy1580 20 IKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILG 65 (267)
Q Consensus 20 ~k~~eKI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRG 65 (267)
+|.+.+|.||. +-+|.|+|-.|.+.|.|++++||+|.|-.
T Consensus 2 ~~~~~~i~VP~------~rvg~liGk~g~~~k~i~e~~g~~i~id~ 41 (191)
T 1tua_A 2 MKPRIYVKVKP------ERLGAVIGPRGEVKAEIMRRTGTVITVDT 41 (191)
T ss_dssp CCCCEEEECCG------GGHHHHHCGGGHHHHHHHHHHTEEEEEET
T ss_pred CCcceEEECCH------HHhhHHHhcCHhHHHHHHHHHCcEEEEEc
Confidence 45567888883 57899999999999999999999999953
No 62
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=89.55 E-value=0.065 Score=44.93 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=27.0
Q ss_pred CCeeeEEeCCCcchHHHHHHhhCceEEEe
Q psy1580 36 FNFVGKLLGPKGNSLKRLQEDTMTRMAIL 64 (267)
Q Consensus 36 ~NFvGrILGPrG~TlKrLE~eTgcKI~IR 64 (267)
-..+|.||||.|+.++.||..|+|.|.|-
T Consensus 64 ~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~ 92 (140)
T 3v69_A 64 PRLLEIMFGKDGEHIPHLESMLHTLIHVN 92 (140)
T ss_dssp GGGHHHHHCGGGTTHHHHHHHHTSEEEEE
T ss_pred hhhhhcccCCCcCccchHHhhcceeEEEe
Confidence 46789999999999999999999999986
No 63
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.58 E-value=0.13 Score=36.50 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=17.5
Q ss_pred CccccCCCCCCCCCCCCCCC
Q psy1580 175 SPVENLTPPEYTLVDPAFNR 194 (267)
Q Consensus 175 ~~c~~cg~~gh~t~dc~~~~ 194 (267)
-.|-.||..||..+||+.++
T Consensus 8 ~~C~kCGk~GH~~k~Cp~~~ 27 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPTNG 27 (55)
T ss_dssp CCCTTTCCTTSCGGGCSGGG
T ss_pred CccccCCCcCcccccCCCCC
Confidence 36999999999999999664
No 64
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=87.44 E-value=0.27 Score=31.78 Aligned_cols=19 Identities=16% Similarity=-0.200 Sum_probs=16.8
Q ss_pred CccccCCCCCCCCCCCCCC
Q psy1580 175 SPVENLTPPEYTLVDPAFN 193 (267)
Q Consensus 175 ~~c~~cg~~gh~t~dc~~~ 193 (267)
++|-.||+.||+++||+..
T Consensus 1 i~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 1 LTCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp CBCTTTCCBSSCTTTCCSC
T ss_pred CeeeccCCCCcccccCCCC
Confidence 4689999999999999864
No 65
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=85.74 E-value=0.4 Score=30.58 Aligned_cols=18 Identities=11% Similarity=-0.142 Sum_probs=16.1
Q ss_pred ccccCCCCCCCCCCCCCC
Q psy1580 176 PVENLTPPEYTLVDPAFN 193 (267)
Q Consensus 176 ~c~~cg~~gh~t~dc~~~ 193 (267)
.|-.||+.||+++||+..
T Consensus 2 ~C~~Cg~~GH~~~~C~~~ 19 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP 19 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB
T ss_pred cccccCCCCcchhhCcCc
Confidence 588999999999999863
No 66
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=85.18 E-value=0.18 Score=31.10 Aligned_cols=19 Identities=5% Similarity=-0.405 Sum_probs=16.3
Q ss_pred CCccccCCCCCCCCCCCCC
Q psy1580 174 TSPVENLTPPEYTLVDPAF 192 (267)
Q Consensus 174 ~~~c~~cg~~gh~t~dc~~ 192 (267)
+..|.+|+-.||.+.||.-
T Consensus 3 RpYCe~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 3 RPYCEICEMFGHWATNCND 21 (26)
T ss_dssp -CEETTTTEESSCGGGCCT
T ss_pred CccchHHHHhCcccccCCc
Confidence 4579999999999999964
No 67
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=84.24 E-value=0.48 Score=32.10 Aligned_cols=19 Identities=5% Similarity=-0.305 Sum_probs=17.4
Q ss_pred CccccCCCCCCCCCCCCCC
Q psy1580 175 SPVENLTPPEYTLVDPAFN 193 (267)
Q Consensus 175 ~~c~~cg~~gh~t~dc~~~ 193 (267)
..|-.||+.||+.+||+..
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCS
T ss_pred CeeeecCCCCcChhhCcCC
Confidence 5799999999999999874
No 68
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=82.48 E-value=0.88 Score=43.35 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=46.4
Q ss_pred eEEEEEecCCCCCCCCeeeEEeCCCc--chHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEe
Q psy1580 22 VTIRVIVPVRDHPKFNFVGKLLGPKG--NSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITA 99 (267)
Q Consensus 22 ~~eKI~IPvkeyP~~NFvGrILGPrG--~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa 99 (267)
.+..|-|+.+ ++..|||-+| .++++|.++|||+|..=..++..+. ....-.|.|++
T Consensus 186 ~s~~v~V~~~------~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~----------------~~~~~~ItItG 243 (376)
T 3n89_A 186 FTLHFTLSTY------YVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNET----------------RGNIYEIKVVG 243 (376)
T ss_dssp EEEEEEEEGG------GHHHHTCCTTSCCHHHHHHHHHTCEEECC-------------------------CCEEEEEEES
T ss_pred eEEEEEeCHH------HHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccc----------------cCCceEEEEEe
Confidence 3444555533 4678999999 4569999999999997555432110 01234577877
Q ss_pred cCChhHHHHHHHHHHHHHHHhh
Q psy1580 100 FAPPAEAHARIAYALAEVRRFL 121 (267)
Q Consensus 100 ~~~~~~a~~rl~~Av~~I~~lL 121 (267)
. .+.+.+|.+.|..+|
T Consensus 244 s------~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 244 N------IDNVLKARRYIMDLL 259 (376)
T ss_dssp C------HHHHHHHHHHHHHTS
T ss_pred C------HHHHHHHHHHHHhhC
Confidence 4 478889999998866
No 69
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=80.68 E-value=0.69 Score=32.61 Aligned_cols=21 Identities=10% Similarity=-0.077 Sum_probs=18.4
Q ss_pred CCccccCCCCCCCCCCCCCCC
Q psy1580 174 TSPVENLTPPEYTLVDPAFNR 194 (267)
Q Consensus 174 ~~~c~~cg~~gh~t~dc~~~~ 194 (267)
...|-.||+.||+++||+...
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~ 24 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKR 24 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTT
T ss_pred CCcccccCCCCeehhhCcCCc
Confidence 457999999999999999864
No 70
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=79.86 E-value=1.7 Score=28.90 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCCccccc
Q psy1580 151 GGAASCSESSESSVNNPLLYA 171 (267)
Q Consensus 151 ~r~~~cg~~~h~~~~cp~~~~ 171 (267)
..|-+||..||.+.+||.+..
T Consensus 11 ~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSSCC
T ss_pred CeeeECCCCCcchhhCcCCcc
Confidence 458899999999999998554
No 71
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=78.79 E-value=0.74 Score=31.57 Aligned_cols=20 Identities=10% Similarity=-0.232 Sum_probs=17.7
Q ss_pred CCccccCCCCCCCCCCCCCC
Q psy1580 174 TSPVENLTPPEYTLVDPAFN 193 (267)
Q Consensus 174 ~~~c~~cg~~gh~t~dc~~~ 193 (267)
...|-.||..||+++||+..
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSSC
T ss_pred CcceeeeCCCCcChhhcCCC
Confidence 35799999999999999874
No 72
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=78.21 E-value=0.43 Score=48.85 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=0.0
Q ss_pred CeeeEEeCCCcchHHHHHHhhCceEEEeecc
Q psy1580 37 NFVGKLLGPKGNSLKRLQEDTMTRMAILGRG 67 (267)
Q Consensus 37 NFvGrILGPrG~TlKrLE~eTgcKI~IRGrG 67 (267)
..+|.+|||.|.|++.|.++||++|-|...|
T Consensus 569 ~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg 599 (723)
T 3cdi_A 569 DKIKDVIGKGGSVIRALTEETGTTIEIEDDG 599 (723)
T ss_dssp -------------------------------
T ss_pred HHhcccccccceeeeeeehhhCceEEecCCc
Confidence 4678999999999999999999999888755
No 73
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.99 E-value=1.1 Score=31.83 Aligned_cols=19 Identities=5% Similarity=-0.141 Sum_probs=17.1
Q ss_pred CccccCCCCCCCCCCCCCC
Q psy1580 175 SPVENLTPPEYTLVDPAFN 193 (267)
Q Consensus 175 ~~c~~cg~~gh~t~dc~~~ 193 (267)
..|-.||+.||+.+||+..
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~ 26 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLP 26 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSC
T ss_pred CcccccCCCCcChhhCCCC
Confidence 5699999999999999964
No 74
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=77.67 E-value=0.72 Score=34.96 Aligned_cols=20 Identities=0% Similarity=-0.297 Sum_probs=16.6
Q ss_pred CCccccCCCCCCCCCCCCCC
Q psy1580 174 TSPVENLTPPEYTLVDPAFN 193 (267)
Q Consensus 174 ~~~c~~cg~~gh~t~dc~~~ 193 (267)
.+.|..||.+||+.+|||..
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG
T ss_pred cCCCCCCCCCCCccccCCCc
Confidence 36799999999999999873
No 75
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=73.29 E-value=0.48 Score=48.81 Aligned_cols=37 Identities=35% Similarity=0.653 Sum_probs=11.8
Q ss_pred EEEecCCCCCCCCeeeEEeCCCcchHHHHHHhhCceEEEeecc
Q psy1580 25 RVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRG 67 (267)
Q Consensus 25 KI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eTgcKI~IRGrG 67 (267)
.+-||.+ .+|.+|||+|.++|.|+++||++|.|-..|
T Consensus 601 ~~~I~~~------ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG 637 (757)
T 1e3p_A 601 TVKIPVD------KIGEVIGPKRQMINQIQEDTGAEITIEDDG 637 (757)
T ss_dssp CC------------------------CTTCCCCCSCC------
T ss_pred EEEEChH------HeehcccccceeeehhhHhhCCEEEecCCc
Confidence 3556644 568899999999999999999999887644
No 76
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=72.93 E-value=1.7 Score=30.82 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCCCCCCccccc
Q psy1580 151 GGAASCSESSESSVNNPLLYA 171 (267)
Q Consensus 151 ~r~~~cg~~~h~~~~cp~~~~ 171 (267)
..|-+||+.||.+.+||.+-.
T Consensus 24 ~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp TBCSSSCCBSSCGGGCTTCCC
T ss_pred CcceeCCCCCcccccCcCCcc
Confidence 458899999999999998543
No 77
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=71.74 E-value=0.8 Score=31.94 Aligned_cols=19 Identities=0% Similarity=-0.340 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCCCCCCC
Q psy1580 176 PVENLTPPEYTLVDPAFNR 194 (267)
Q Consensus 176 ~c~~cg~~gh~t~dc~~~~ 194 (267)
.|-.||+.||+.+||+...
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~~ 21 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEHA 21 (60)
T ss_dssp -------------------
T ss_pred ccccCCCCCcCHhhCcCCC
Confidence 5889999999999999863
No 78
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=69.31 E-value=2.4 Score=25.16 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=16.0
Q ss_pred CCCCCCCCCCCCCCCccc
Q psy1580 152 GAASCSESSESSVNNPLL 169 (267)
Q Consensus 152 r~~~cg~~~h~~~~cp~~ 169 (267)
.|-+||..||.+-+||..
T Consensus 4 ~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 4 VCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp BCTTTCCBSSCTTTTTCC
T ss_pred eeEeCCCCCcccccCCCc
Confidence 478999999999999974
No 79
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=66.42 E-value=1.9 Score=35.51 Aligned_cols=19 Identities=5% Similarity=-0.144 Sum_probs=17.5
Q ss_pred CCccccCCCCCCCCCCCCC
Q psy1580 174 TSPVENLTPPEYTLVDPAF 192 (267)
Q Consensus 174 ~~~c~~cg~~gh~t~dc~~ 192 (267)
..+|-.||..||++++|+.
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCS
T ss_pred CCcccEeCCccchhhhCCC
Confidence 4679999999999999997
No 80
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=64.85 E-value=1.4 Score=29.88 Aligned_cols=22 Identities=9% Similarity=-0.248 Sum_probs=17.0
Q ss_pred cCCCccccCCCCCCCCCCCCCC
Q psy1580 172 ENTSPVENLTPPEYTLVDPAFN 193 (267)
Q Consensus 172 ~~~~~c~~cg~~gh~t~dc~~~ 193 (267)
..+..|.+|.-+||.|.+|.-.
T Consensus 18 ~eRpYCd~CEvFGH~t~~Cndd 39 (42)
T 2pzo_E 18 EERPYCEICEMFGHWATNCNDD 39 (42)
T ss_dssp ---CEETTTTEESSCGGGCCTT
T ss_pred cCCcccccccccCcccccCCcc
Confidence 4557899999999999999753
No 81
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=64.64 E-value=1.4 Score=26.83 Aligned_cols=20 Identities=10% Similarity=-0.009 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCCCCCCCccc
Q psy1580 150 DGGAASCSESSESSVNNPLL 169 (267)
Q Consensus 150 t~r~~~cg~~~h~~~~cp~~ 169 (267)
...|-+||..||.+-+||..
T Consensus 6 ~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSS
T ss_pred CCEEEECCccccCHhHCccc
Confidence 45688999999999999863
No 82
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=64.06 E-value=2 Score=35.68 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=27.3
Q ss_pred CeeeEEeCCCcchHHHHHHhhCceEEEeec
Q psy1580 37 NFVGKLLGPKGNSLKRLQEDTMTRMAILGR 66 (267)
Q Consensus 37 NFvGrILGPrG~TlKrLE~eTgcKI~IRGr 66 (267)
+.+|..+|++|+..+.+++++|-||-|---
T Consensus 45 g~vGa~IG~~G~ri~~i~~elgekIdIV~~ 74 (144)
T 2cxc_A 45 GEAGRAIGRGGRLIKLLREALGKNIEVVEY 74 (144)
T ss_dssp TCHHHHHCGGGHHHHHHHHHHSSEEEEEEC
T ss_pred CCccccCccCchHHHHHHHHhCCeeEEEEc
Confidence 349999999999999999999999988775
No 83
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=61.73 E-value=1.8 Score=29.34 Aligned_cols=22 Identities=9% Similarity=-0.248 Sum_probs=17.9
Q ss_pred cCCCccccCCCCCCCCCCCCCC
Q psy1580 172 ENTSPVENLTPPEYTLVDPAFN 193 (267)
Q Consensus 172 ~~~~~c~~cg~~gh~t~dc~~~ 193 (267)
+.+..|.+|.=+||.|.+|.-.
T Consensus 18 ~eRpYCe~CEVFGH~t~eC~dd 39 (42)
T 3e2u_E 18 EERPYCEICEMFGHWATNCNDD 39 (42)
T ss_dssp --CCEETTTTEESSCGGGCCTT
T ss_pred ccCcccccceecccccccCCcc
Confidence 3467899999999999999754
No 84
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.90 E-value=12 Score=26.19 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCCCCCCCccc
Q psy1580 150 DGGAASCSESSESSVNNPLL 169 (267)
Q Consensus 150 t~r~~~cg~~~h~~~~cp~~ 169 (267)
.+.|-.||..||...+||.+
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 46788999999999999963
No 85
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=46.35 E-value=12 Score=29.97 Aligned_cols=34 Identities=15% Similarity=-0.133 Sum_probs=24.3
Q ss_pred CCCCCC------CccccccCCCccccCCCCC---CCCCCCCCCCcc
Q psy1580 160 SESSVN------NPLLYAENTSPVENLTPPE---YTLVDPAFNRIQ 196 (267)
Q Consensus 160 ~h~~~~------cp~~~~~~~~~c~~cg~~g---h~t~dc~~~~~~ 196 (267)
+|...+ ||...+ -.|.+||-.| |..+-||++...
T Consensus 54 SH~LKd~~G~V~CPvLR~---Y~CpiCGATGd~AHT~kYCP~~~~~ 96 (106)
T 3alr_A 54 SHYLKNRDGDVMCPYLRQ---YKCPLCGATGAKAHTKRFCPMVDKN 96 (106)
T ss_dssp SBCSBCTTSCBCCTTGGG---CCCTTTCCCGGGCCCGGGCTTCGGG
T ss_pred cceeECCCCCCcCCCccc---ccCCCCCCcCCcccceecCCCCCCc
Confidence 565544 998433 3488888776 999999998643
No 86
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=42.70 E-value=19 Score=25.03 Aligned_cols=29 Identities=7% Similarity=-0.083 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCCCCCCCccccccCCCccccCCC
Q psy1580 150 DGGAASCSESSESSVNNPLLYAENTSPVENLTP 182 (267)
Q Consensus 150 t~r~~~cg~~~h~~~~cp~~~~~~~~~c~~cg~ 182 (267)
.|+|--||. .++.-+--....++|.+||-
T Consensus 3 iY~C~rCg~----~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 3 VYRCGKCWK----TFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp --CCCCTTT----TCCCCCSCCCSSSCCTTTCC
T ss_pred EEEeeccCC----CccHHHHhhCCCcccCccCc
Confidence 467777873 34333333346689999984
No 87
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=37.23 E-value=31 Score=30.01 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=46.5
Q ss_pred CeeeEEeCCCcchHHHHHHhhCceEEEeeccccCCcchhhhhhcCCCCccCCCCCccEEEEEecCChhHHHHHHHHHHHH
Q psy1580 37 NFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISGDPKFLHLLEELHVEITAFAPPAEAHARIAYALAE 116 (267)
Q Consensus 37 NFvGrILGPrG~TlKrLE~eTgcKI~IRGrGS~kd~~ke~elr~sgdp~~~hl~EpLHVlIsa~~~~~~a~~rl~~Av~~ 116 (267)
+++.+++||+|+-+..|.+.++|+|.| |. ++ .|||.+.++ .-...+..|+..
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~v-G~----NG---------------------~IWi~~~~~--~~~~~~~~ai~~ 208 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFV-AR----NG---------------------RIHLECPNE--DLEAIAVMAIKI 208 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEE-ET----TT---------------------EEEEECSCH--HHHHHHHHHHHH
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEE-eC----CC---------------------EEEEecCCH--HHHHHHHHHHHH
Confidence 577899999999999999999999988 43 11 377887653 233455677777
Q ss_pred HHHhhcCCCcCCCCcchhHHHHH
Q psy1580 117 VRRFLVPFTRSLFQDYNDEIRQE 139 (267)
Q Consensus 117 I~~lL~P~~~s~~~d~~DelK~~ 139 (267)
++.--... +..|.+++.
T Consensus 209 ~e~~~~~~------~l~~~v~~~ 225 (235)
T 2z0s_A 209 IDEEAYTS------GLTKRIIKF 225 (235)
T ss_dssp HHHCSCCT------TCHHHHHHH
T ss_pred HHhhhhhh------hHHHHHHHH
Confidence 76533221 445666543
No 88
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=34.68 E-value=8.5 Score=36.51 Aligned_cols=42 Identities=17% Similarity=0.388 Sum_probs=34.8
Q ss_pred EEEecCCCCCCCCeeeEEeCCCcchHHHHHHhh-CceEEEeecc
Q psy1580 25 RVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDT-MTRMAILGRG 67 (267)
Q Consensus 25 KI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eT-gcKI~IRGrG 67 (267)
||-|=- .-|+++-||..+|++|+.++.|.++. |=||-|---.
T Consensus 238 KIAV~s-~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~s 280 (366)
T 1k0r_A 238 KIAVRS-NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYD 280 (366)
T ss_dssp EEEEEE-SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC
T ss_pred EEEEEe-CCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEEcC
Confidence 454432 24899999999999999999999999 9999998753
No 89
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=31.47 E-value=10 Score=34.27 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=34.5
Q ss_pred EEEEecCCCCCCCCeeeEEeCCCcchHHHH-HHhhCceEEEeecc
Q psy1580 24 IRVIVPVRDHPKFNFVGKLLGPKGNSLKRL-QEDTMTRMAILGRG 67 (267)
Q Consensus 24 eKI~IPvkeyP~~NFvGrILGPrG~TlKrL-E~eTgcKI~IRGrG 67 (267)
.||-|=-. -|+++-||..+|++|+.++.+ ++-.|=||-|--=.
T Consensus 114 ~KiAV~s~-d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~s 157 (251)
T 2asb_A 114 SKIAVRSN-VAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYD 157 (251)
T ss_dssp EEEEEEES-STTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC
T ss_pred eEEEEEcC-CCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEEEec
Confidence 35544432 389999999999999999999 77789999998753
No 90
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=29.71 E-value=7.5 Score=32.47 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=18.3
Q ss_pred eeEEeCCCcchHHHHHHhhC
Q psy1580 39 VGKLLGPKGNSLKRLQEDTM 58 (267)
Q Consensus 39 vGrILGPrG~TlKrLE~eTg 58 (267)
.|+|||-+|.|++.||--+.
T Consensus 44 ~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 44 SALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp GTTTTCGGGHHHHHHHHHHH
T ss_pred cceEECCCCcchHHHHHHHH
Confidence 68999999999999998873
No 91
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=26.47 E-value=40 Score=30.77 Aligned_cols=34 Identities=9% Similarity=-0.075 Sum_probs=24.0
Q ss_pred HhhCCCCCCCCCCCC-CCCCCCccccccCCCccccCCCC
Q psy1580 146 ILKEDGGAASCSESS-ESSVNNPLLYAENTSPVENLTPP 183 (267)
Q Consensus 146 ~lNGt~r~~~cg~~~-h~~~~cp~~~~~~~~~c~~cg~~ 183 (267)
-+|-+..|..||+.. ...+ .+......|..||-+
T Consensus 17 ~~~~~~~Cp~Cg~~~~~iv~----D~~~G~~vC~~CG~V 51 (345)
T 3k7a_M 17 NLNIVLTCPECKVYPPKIVE----RFSEGDVVCALCGLV 51 (345)
T ss_dssp CCCCCCCCSTTCCSCCCCCC----CSSSCSCCCSSSCCC
T ss_pred cccCCCcCcCCCCCCCceEE----ECCCCCEecCCCCeE
Confidence 677788899999752 2333 356667789999864
No 92
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=24.09 E-value=23 Score=33.20 Aligned_cols=41 Identities=17% Similarity=0.424 Sum_probs=33.1
Q ss_pred EEEecCCCCCCCCeeeEEeCCCcchHHHHHHhh-CceEEEeec
Q psy1580 25 RVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDT-MTRMAILGR 66 (267)
Q Consensus 25 KI~IPvkeyP~~NFvGrILGPrG~TlKrLE~eT-gcKI~IRGr 66 (267)
||-|-- .-|+++-+|..+|++|+.++.+.+|. |=+|-|=--
T Consensus 234 KiAV~s-~d~~iDpvGacvg~~G~ri~~i~~el~ge~Idii~~ 275 (344)
T 1hh2_P 234 KVAVAS-NDPNVDPIGACIGEGGSRIAAILKELKGEKLDVLKW 275 (344)
T ss_dssp EEEEEE-SSTTSCHHHHHHCTTSTTHHHHHHHTTTCEEEEEEC
T ss_pred ceeEEc-cCCCccccceeeccCCcEeHHHHHHhCCCeeeEEec
Confidence 444432 24889999999999999999999999 788877654
Done!