RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1580
(267 letters)
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 134
Score = 145 bits (368), Expect = 9e-45
Identities = 46/127 (36%), Positives = 81/127 (63%), Gaps = 7/127 (5%)
Query: 21 KVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRI 80
++ ++ VPV+++P FNFVG++LGP+G + K+L+ +T ++ + G+GS+RD+ KEE+ R
Sbjct: 1 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNR- 59
Query: 81 SGDPKFLHLLEELHVEITAFAPPAEAHARIAYALAEVRRFLVPFTRSLFQDYNDEIRQEQ 140
G P + HL E+LHV IT A ++ A+ EV++ LVP + D +++ +
Sbjct: 60 -GKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVP-----AAEGEDSLKKMK 113
Query: 141 MWEMQIL 147
+ E+ IL
Sbjct: 114 LMELAIL 120
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 125 bits (316), Expect = 4e-37
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Query: 21 KVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRI 80
+V+ +V++P ++P+ NFVG L+GP+GN+LK ++++ ++ I G+GS+++ +
Sbjct: 2 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRK--- 58
Query: 81 SGDPKFLHLLEELHVEITAFAPPAEAHARIAYALAEVRRFLVPFTRSLFQDYNDEIRQEQ 140
E LH +TA A + P + +++R+ Q
Sbjct: 59 -DGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETP-------EDQNDLRKMQ 110
Query: 141 MWEMQIL 147
+ E+ L
Sbjct: 111 LRELARL 117
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2,
nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 43.7 bits (103), Expect = 8e-07
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 20 IKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELR 79
+K + + VP N VG +LG G +L QE T R+ I +G + +
Sbjct: 1 MKELVEMAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVT 54
Query: 80 ISGDPK 85
I+G P
Sbjct: 55 ITGSPA 60
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 81
Score = 40.7 bits (95), Expect = 1e-05
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 17 DKPIKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEE 76
D P +++P + G ++G G ++K+LQE +M ++ G ++ ++
Sbjct: 3 DGPGNAVQEIMIPA------SKAGLVIGKGGETIKQLQERAGVKMVMIQDGP-QNTGADK 55
Query: 77 ELRISGDP 84
LRI+GDP
Sbjct: 56 PLRITGDP 63
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 38.5 bits (90), Expect = 5e-05
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 13 DITRDKPIKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDR 72
DI + + V +P H ++G G L+ L+ T T++ I
Sbjct: 1 DIVARLQTQASATVAIPKEHH------RFVIGKNGEKLQDLELKTATKIQIPRPDD---- 50
Query: 73 HKEEELRISGDPK 85
+++I+G +
Sbjct: 51 -PSNQIKITGTKE 62
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 37.2 bits (86), Expect = 2e-04
Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 21 KVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRI 80
+T +V +P + G ++G G +K+++ ++ + I + ++ + I
Sbjct: 3 IITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITI 53
Query: 81 SGDP 84
+G
Sbjct: 54 TGTQ 57
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 79
Score = 36.7 bits (85), Expect = 2e-04
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 16 RDKPIKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKE 75
+ + +T VP VG ++G G + R+Q+++ ++ I E
Sbjct: 2 QQQRSVMTEEYKVPD------GMVGFIIGRGGEQISRIQQESGCKIQIAPD---SGGLPE 52
Query: 76 EELRISGDP 84
++G P
Sbjct: 53 RSCMLTGTP 61
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 36.3 bits (84), Expect = 3e-04
Identities = 9/64 (14%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 21 KVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRI 80
+ T + +P N +G ++G +G ++ +++ + ++ I + ++ I
Sbjct: 1 QTTHELTIPN------NLIGCIIGRQGANINEIRQMSGAQIKIANP---VEGSSGRQVTI 51
Query: 81 SGDP 84
+G
Sbjct: 52 TGSA 55
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 36.7 bits (85), Expect = 4e-04
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 20 IKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELR 79
+ VTI V VP H ++G KG+ ++++ ++ + + + + +
Sbjct: 8 VPVTIEVEVPFDLH------RYVIGQKGSGIRKMMDEFEVNIHVPAPEL-----QSDIIA 56
Query: 80 ISGDPK 85
I+G
Sbjct: 57 ITGLAA 62
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 35.5 bits (82), Expect = 5e-04
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 22 VTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRIS 81
+ + + + H L+G G ++ R+++ + I D K +RI
Sbjct: 5 DYVEINIDHKFH------RHLIGKSGANINRIKDQYKVSVRI-----PPDSEKSNLIRIE 53
Query: 82 GDPKFLHLLEELHVEITA 99
GDP+ + + +E+ +
Sbjct: 54 GDPQGVQQAKRELLELAS 71
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 33.7 bits (77), Expect = 0.002
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 23 TIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEELRISG 82
I V +P VG ++G G +K++Q D R+ E +I+G
Sbjct: 4 MIDVPIPR------FAVGIVIGRNGEMIKKIQNDAGVRIQFKPD---DGTTPERIAQITG 54
Query: 83 DP 84
P
Sbjct: 55 PP 56
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein
1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 28.6 bits (64), Expect = 0.14
Identities = 5/41 (12%), Positives = 13/41 (31%)
Query: 37 NFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEE 77
V +++G + + L + + + G I
Sbjct: 10 VKVPRVIGKNKSMYETLTSKSGCSIFVANNGRIWATCPSRF 50
>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}
Length = 394
Score = 30.2 bits (66), Expect = 0.24
Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 3/43 (6%)
Query: 77 ELRISGDPKFLHLLEELHVEIT---AFAPPAEAHARIAYALAE 116
L++ ++ + + F RI A
Sbjct: 334 ALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPS 376
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 27.8 bits (62), Expect = 0.33
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 25 RVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILG-RGSIRDRHKEEELRISGD 83
R+ V V+ +G ++GP+G + T T + + + + E
Sbjct: 4 RIYVKVKP----ERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEG----IP 55
Query: 84 PKFLHLLEELHVEITAFAPPAEA 106
P L E+ I+ PP +A
Sbjct: 56 PVNLMKAAEVVKAISLGFPPEKA 78
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 27.5 bits (61), Expect = 0.47
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 22 VTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDT 57
V P H ++G KG +L ++ +
Sbjct: 21 TVSSVAAPSWLHRF------IIGKKGQNLAKITQQM 50
>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY
{Escherichia coli [TaxId: 562]}
Length = 361
Score = 29.0 bits (63), Expect = 0.54
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 3/43 (6%)
Query: 77 ELRISGDPKFLHLLEELHVEIT---AFAPPAEAHARIAYALAE 116
L I + L+E+ V I + R+
Sbjct: 301 PLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPR 343
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein
1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 27.0 bits (60), Expect = 0.79
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 37 NFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIRDRHKEEE 77
V +++G K + LK L+E T ++ + G I E+
Sbjct: 10 AKVPRVIGRKMSMLKTLEEKTECKIFVARNGRIHLECPNED 50
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domain 6 {Streptomyces antibioticus
[TaxId: 1890]}
Length = 54
Score = 26.2 bits (58), Expect = 0.86
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 22 VTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGRGSIR 70
I V +PV + +G+++GPK + ++QEDT + I G+I
Sbjct: 3 RIITVKIPV------DKIGEVIGPKRQMINQIQEDTGAEITIEDDGTIY 45
>d1yx0a1 d.108.1.1 (A:1-151) Hypothetical protein YsnE {Bacillus
subtilis [TaxId: 1423]}
Length = 151
Score = 27.1 bits (59), Expect = 1.6
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 83 DPKFLHLLEELHVEITAFAPPAEAHA-RIAYALAEVRRFLV 122
+ + L+ E +T +PP HA + F
Sbjct: 10 GRQVVSLVNEHLHSMTLMSPPESIHALGLEKLRGPEITFWS 50
>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase
(ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId:
4081]}
Length = 428
Score = 27.3 bits (59), Expect = 2.1
Identities = 3/32 (9%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 88 HLLEELHVEI---TAFAPPAEAHARIAYALAE 116
++ ++ + + ++F R+ +A +
Sbjct: 378 VIINDVKLNVSPGSSFECQEPGWFRVCFANMD 409
>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase
(ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}
Length = 431
Score = 26.9 bits (58), Expect = 3.2
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 88 HLLEELHVEI---TAFAPPAEAHARIAYA 113
++ E+H+ I ++ R+ +A
Sbjct: 381 KIVYEVHLNISPGSSCHCTEPGWFRVCFA 409
>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 395
Score = 26.1 bits (56), Expect = 4.8
Identities = 7/34 (20%), Positives = 9/34 (26%), Gaps = 3/34 (8%)
Query: 86 FLHLLEELHVEIT---AFAPPAEAHARIAYALAE 116
L +L HV F H R +
Sbjct: 345 VLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPI 378
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 26.0 bits (56), Expect = 5.0
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 88 HLLEELHVEI---TAFAPPAEAHARIAYALAE 116
+L+E V + +AF E + RI+YA A
Sbjct: 337 LMLKEARVAVVPGSAFGKAGEGYVRISYATAY 368
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation
syndrome related protein 1, FXR1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 78
Score = 24.1 bits (52), Expect = 7.3
Identities = 6/52 (11%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 15 TRDKPIKVTIRVIVPVRDHPKFNFVGKLLGPKGNSLKRLQEDTMTRMAILGR 66
T+ +V + +G +G G+++++ ++ L
Sbjct: 1 TKQLAAAFHEEFVVRE------DLMGLAIGTHGSNIQQARKVPGVTAIELDE 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.376
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 962,935
Number of extensions: 43991
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 25
Length of query: 267
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,254,276
Effective search space: 229532508
Effective search space used: 229532508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)