BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15800
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91Z53|GRHPR_MOUSE Glyoxylate reductase/hydroxypyruvate reductase OS=Mus musculus
GN=Grhpr PE=1 SV=1
Length = 328
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 41/66 (62%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
AG NL+VIST SVG DHL LD+IK RGIRVG V +DA AE + L + RR +
Sbjct: 71 AGANLRVISTLSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPEAI 130
Query: 65 NCIASG 70
+ +G
Sbjct: 131 EEVKNG 136
>sp|Q9UBQ7|GRHPR_HUMAN Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens
GN=GRHPR PE=1 SV=1
Length = 328
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
AG NLKVIST SVG DHL LD+IK RGIRVG V +D AE + L + RR +
Sbjct: 71 AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAI 130
Query: 65 NCIASG 70
+ +G
Sbjct: 131 EEVKNG 136
>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR
PE=3 SV=1
Length = 339
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 42/66 (63%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
A NLKVIST+SVG DH+ + + RGI V V +DAVAEF +GL +AV+RR +
Sbjct: 66 AAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILAVTRRIVEAD 125
Query: 65 NCIASG 70
I +G
Sbjct: 126 KIIRTG 131
>sp|P36234|DHGY_HYPME Glycerate dehydrogenase OS=Hyphomicrobium methylovorum PE=1 SV=2
Length = 322
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 4 RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
R EN+K IST+S+G DH+ LD K+RGI+VG + A AE + L + +RR +G
Sbjct: 65 RIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEG 124
Query: 64 HNCIASGTEKSQQHAITELITQSDTNHT 91
I + + + EL+ + N T
Sbjct: 125 EKMIRTRSWPGWEP--LELVGEKLDNKT 150
>sp|Q2FVW4|Y2577_STAA8 Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577
OS=Staphylococcus aureus (strain NCTC 8325)
GN=SAOUHSC_02577 PE=3 SV=1
Length = 317
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
AG++LK+I+ + G +++ ++ + + I V S++A A+ IGL +AV+RR +G
Sbjct: 63 AGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEG 121
>sp|Q6GEC9|Y2389_STAAR Putative 2-hydroxyacid dehydrogenase SAR2389 OS=Staphylococcus
aureus (strain MRSA252) GN=SAR2389 PE=3 SV=1
Length = 317
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
AG++LK+I+ + G +++ ++ + + I V S++A A+ IGL +AV+RR +G
Sbjct: 63 AGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEG 121
>sp|Q5HDQ4|Y2296_STAAC Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=Staphylococcus
aureus (strain COL) GN=SACOL2296 PE=3 SV=1
Length = 317
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
AG++LK+I+ + G +++ ++ + + I V S++A A+ IGL +AV+RR +G
Sbjct: 63 AGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEG 121
>sp|Q2FEI9|Y2254_STAA3 Putative 2-hydroxyacid dehydrogenase SAUSA300_2254
OS=Staphylococcus aureus (strain USA300)
GN=SAUSA300_2254 PE=3 SV=1
Length = 317
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
AG++LK+I+ + G +++ ++ + + I V S++A A+ IGL +AV+RR +G
Sbjct: 63 AGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEG 121
>sp|Q8NV80|Y2224_STAAW Putative 2-hydroxyacid dehydrogenase MW2224 OS=Staphylococcus
aureus (strain MW2) GN=MW2224 PE=3 SV=1
Length = 317
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
AG++LK+I+ + G +++ ++ + + I V S++A A+ IGL +AV+RR +G
Sbjct: 63 AGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEG 121
>sp|Q6G716|Y2196_STAAS Putative 2-hydroxyacid dehydrogenase SAS2196 OS=Staphylococcus
aureus (strain MSSA476) GN=SAS2196 PE=3 SV=1
Length = 317
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
AG++LK+I+ + G +++ ++ + + I V S++A A+ IGL +AV+RR +G
Sbjct: 63 AGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEG 121
>sp|Q99RW8|Y2305_STAAM Putative 2-hydroxyacid dehydrogenase SAV2305 OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=SAV2305 PE=1 SV=1
Length = 317
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
AG++LK+I+ + G +++ ++ + + I V S++A A+ IGL +AV+RR +G
Sbjct: 63 AGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEG 121
>sp|Q7A417|Y2098_STAAN Putative 2-hydroxyacid dehydrogenase SA2098 OS=Staphylococcus
aureus (strain N315) GN=SA2098 PE=1 SV=1
Length = 317
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
AG++LK+I+ + G +++ ++ + + I V S++A A+ IGL +AV+RR +G
Sbjct: 63 AGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEG 121
>sp|Q2YYT9|Y2178_STAAB Putative 2-hydroxyacid dehydrogenase SAB2178 OS=Staphylococcus
aureus (strain bovine RF122 / ET3-1) GN=SAB2178 PE=3
SV=1
Length = 317
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
AG++LK+I+ + G +++ ++ + + I V S++A A+ IGL +A++RR +G
Sbjct: 63 AGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAIARRIVEG 121
>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1
Length = 333
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
A L++++ ++VG+D++ +++ RGI V V +DA A+F L +A +RR +
Sbjct: 64 AAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEAD 123
Query: 65 NCIASGTEKSQ 75
+ SG K +
Sbjct: 124 HFTRSGEWKRR 134
>sp|Q9LE33|HPR3_ARATH Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana
GN=HPR3 PE=2 SV=1
Length = 323
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 7 ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 66
+L+++ SVG DH+ L K RGI + G SD VA+ +GL I+V RR
Sbjct: 73 PSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLISVLRRIPAADRY 132
Query: 67 IASG 70
+ SG
Sbjct: 133 VRSG 136
>sp|Q9CA90|HPR2_ARATH Glyoxylate/hydroxypyruvate reductase A HPR2 OS=Arabidopsis thaliana
GN=HPR2 PE=1 SV=1
Length = 313
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 8 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 67
NL+++S+FSVG D + L + K +GIRV V ++ VA+ IGL +A+ RR + +
Sbjct: 67 NLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCECDRYV 126
Query: 68 ASGTEKSQQHAIT 80
SG K + +T
Sbjct: 127 RSGKWKQGEFQLT 139
>sp|C5A1V0|GYAR_THEGJ Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1
Length = 334
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 39/67 (58%)
Query: 9 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIA 68
L++++ ++VG+D++ +++ RGI V V ++A A+F L +A +RR + +
Sbjct: 68 LRIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATARRLIEADSFTR 127
Query: 69 SGTEKSQ 75
SG K +
Sbjct: 128 SGEWKRK 134
>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1
Length = 336
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 38/67 (56%)
Query: 9 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIA 68
L++++ ++VG+D++ +++ RGI V V ++A A+ L +A +R +G +
Sbjct: 68 LRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLATARHVVKGDKFVR 127
Query: 69 SGTEKSQ 75
SG K +
Sbjct: 128 SGEWKRK 134
>sp|O32264|TKRA_BACSU Probable 2-ketogluconate reductase OS=Bacillus subtilis (strain
168) GN=yvcT PE=3 SV=1
Length = 325
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 8 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVS-SDAVAEFNIGLAIAVSRRFQQGHNC 66
LKV+S SVG+D+ ++ +K RG+ VGT P + D VA+ L ++ +RR +
Sbjct: 69 KLKVVSNQSVGYDNFDIEAMKERGV-VGTHTPYTLDDTVADLAFSLILSSARRVAELDRF 127
Query: 67 IASG 70
+ +G
Sbjct: 128 VRAG 131
>sp|Q5HLU4|Y1888_STAEQ Putative 2-hydroxyacid dehydrogenase SERP1888 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP1888 PE=3
SV=1
Length = 317
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 8 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
NLK+I+ + G +++ ++ + + I V S++A A+ IGL ++V+RR +G
Sbjct: 66 NLKIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEG 121
>sp|Q58424|SERA_METJA D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=serA PE=3 SV=1
Length = 524
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 65
E LKVI VG D++ ++ +GI V SS +VAE +GL +A +R Q
Sbjct: 61 AEKLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATA 120
Query: 66 CIASG 70
+ G
Sbjct: 121 SLKRG 125
>sp|Q8CNB8|Y1879_STAES Putative 2-hydroxyacid dehydrogenase SE_1879 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_1879 PE=3 SV=1
Length = 317
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 8 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
NLK+I+ + G +++ ++ + + I V S++A A+ IGL ++V+RR +G
Sbjct: 66 NLKIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEG 121
>sp|A3QFC7|PDXB_SHELP Erythronate-4-phosphate dehydrogenase OS=Shewanella loihica (strain
ATCC BAA-1088 / PV-4) GN=pdxB PE=3 SV=1
Length = 376
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 7 ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 66
+ L + + ++G DHL LD +K RGI ++ AV E+ + ++RRF HN
Sbjct: 58 DRLSFVGSATIGMDHLDLDYLKQRGIFCTNAPGCNAVAVGEYAFNAMLELARRF---HNP 114
Query: 67 IASGT 71
+ T
Sbjct: 115 LKGKT 119
>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1)
GN=gyaR PE=3 SV=1
Length = 334
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 38/71 (53%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
A LK+++ ++VG+D++ +++ G+ + V ++A A+ L +A +RR +
Sbjct: 64 AAPRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEAD 123
Query: 65 NCIASGTEKSQ 75
+ SG K +
Sbjct: 124 KFVRSGEWKKR 134
>sp|O29445|SERA_ARCFU D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=serA PE=3 SV=1
Length = 527
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 4 RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
+A +NLK+I VG D++ ++ RGI V ++ + AE I L +A +R+ Q
Sbjct: 59 QAAKNLKIIGRAGVGVDNIDINAATQRGIVVVNAPGGNTISTAEHAIALMLAAARKIPQA 118
Query: 64 HNCIASGTEKSQQHAITEL 82
+ G + ++ EL
Sbjct: 119 DRSVKEGKWERKKFMGIEL 137
>sp|P58000|GHRB_ENTAG Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter agglomerans
GN=tkrA PE=1 SV=1
Length = 323
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 2 SSRAGEN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
SS AGEN L+ ST SVG+D+ ++ + RGI + V ++ VA+ + L ++ +RR
Sbjct: 57 SSAAGENAKLRAASTISVGYDNFDVEALNQRGIVLIDTPTVLTETVADTMMALVLSSARR 116
>sp|O27051|SERA_METTH D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=serA PE=3 SV=1
Length = 525
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
A LK+I+ VG D++ + RGI V +S VAE +IGL +A++R+
Sbjct: 62 AAPRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIAD 121
Query: 65 NCIASGTEKSQQHAITEL 82
+ G + + EL
Sbjct: 122 RSVKEGKWEKNRFMGIEL 139
>sp|Q88VJ2|LDHD_LACPL D-lactate dehydrogenase OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=ldhD PE=3 SV=1
Length = 332
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 1 MSSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNI 50
++ A E +K IS +VG D+L + +K+RG+ + V S +A+AE ++
Sbjct: 62 LNKLADEGVKNISLRNVGVDNLDVPTVKARGLNISNVPAYSPNAIAELSV 111
>sp|P26298|LDHD_LACPE D-lactate dehydrogenase OS=Lactobacillus pentosus PE=1 SV=1
Length = 332
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 1 MSSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNI 50
++ A E +K IS +VG D+L + +K+RG+ + V S +A+AE ++
Sbjct: 62 LNKLADEGVKNISLRNVGVDNLDVPTVKARGLNISNVPAYSPNAIAELSV 111
>sp|O83080|LDHD_TREPA D-lactate dehydrogenase OS=Treponema pallidum (strain Nichols)
GN=ldhD PE=3 SV=1
Length = 331
Score = 35.4 bits (80), Expect = 0.099, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 9 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 62
LKV+ST + G D + +K GIR+ V S +A+ E+ + A+ ++R ++
Sbjct: 70 LKVLSTRTAGFDMYNATLLKKHGIRLTNVPSYSPNAIGEYALAAALQLTRHARE 123
>sp|Q663W4|GHRB_YERPS Glyoxylate/hydroxypyruvate reductase B OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=ghrB
PE=3 SV=1
Length = 326
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
NL+ ST SVG+D+ ++ + RGI + V ++ VA+ + L ++ +RR
Sbjct: 64 APNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARR 117
>sp|A4TGN1|GHRB_YERPP Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis (strain
Pestoides F) GN=ghrB PE=3 SV=1
Length = 326
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
NL+ ST SVG+D+ ++ + RGI + V ++ VA+ + L ++ +RR
Sbjct: 64 APNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARR 117
>sp|Q1CD80|GHRB_YERPN Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=ghrB PE=3 SV=1
Length = 326
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
NL+ ST SVG+D+ ++ + RGI + V ++ VA+ + L ++ +RR
Sbjct: 64 APNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARR 117
>sp|A9R4G6|GHRB_YERPG Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv.
Antiqua (strain Angola) GN=ghrB PE=3 SV=1
Length = 326
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
NL+ ST SVG+D+ ++ + RGI + V ++ VA+ + L ++ +RR
Sbjct: 64 APNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARR 117
>sp|Q0W9V5|GHRB_YERPE Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis GN=ghrB
PE=3 SV=1
Length = 326
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
NL+ ST SVG+D+ ++ + RGI + V ++ VA+ + L ++ +RR
Sbjct: 64 APNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARR 117
>sp|B2K7F1|GHRB_YERPB Glyoxylate/hydroxypyruvate reductase B OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=ghrB
PE=3 SV=1
Length = 326
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
NL+ ST SVG+D+ ++ + RGI + V ++ VA+ + L ++ +RR
Sbjct: 64 APNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARR 117
>sp|Q1C3K4|GHRB_YERPA Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=ghrB PE=3 SV=1
Length = 326
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
NL+ ST SVG+D+ ++ + RGI + V ++ VA+ + L ++ +RR
Sbjct: 64 APNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARR 117
>sp|A7FPA2|GHRB_YERP3 Glyoxylate/hydroxypyruvate reductase B OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=ghrB PE=3 SV=1
Length = 326
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
NL+ ST SVG+D+ ++ + RGI + V ++ VA+ + L ++ +RR
Sbjct: 64 APNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARR 117
>sp|B1JH01|GHRB_YERPY Glyoxylate/hydroxypyruvate reductase B OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=ghrB
PE=3 SV=1
Length = 326
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
NL+ ST SVG+D+ ++ + RGI + V ++ VA+ + L ++ +RR
Sbjct: 64 APNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARR 117
>sp|P30799|DDH_ZYMMO 2-hydroxyacid dehydrogenase homolog OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=ddh PE=3 SV=3
Length = 331
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
AG +K+++ G++++ LD K I+V V S +VAE+ +G+ + ++R+ +G
Sbjct: 65 AGLGIKLVALRCAGYNNVDLDAAKKLNIKVVRVPAYSPYSVAEYAVGMLLTLNRQISRG 123
>sp|Q67U69|FDH2_ORYSJ Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os06g0486900 PE=2 SV=1
Length = 378
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 4 RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
+ +NL+++ T VG DH+ L + G+ V + ++ +VAE + + + R F G
Sbjct: 109 KKAKNLELLLTAGVGSDHIDLPAAAAAGLTVAEITGSNTVSVAEDQLMRILLLLRNFLPG 168
Query: 64 HNCIASG 70
H+ I +G
Sbjct: 169 HHQIVNG 175
>sp|C1DM66|PDXB_AZOVD Erythronate-4-phosphate dehydrogenase OS=Azotobacter vinelandii
(strain DJ / ATCC BAA-1303) GN=pdxB PE=3 SV=1
Length = 380
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
G ++ + T ++G DHL LD ++ RGI + ++ V ++ +G ++++ R
Sbjct: 56 GSRVRFVGTCTIGTDHLDLDYLRRRGIAWASAPGCNARGVVDYVLGSLLSLAER 109
>sp|Q02961|YP113_YEAST Putative 2-hydroxyacid dehydrogenase YPL113C OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YPL113C PE=2
SV=1
Length = 396
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 8 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSR 58
+LKVI VG D + ++S+GI + +GP ++D V E I LAI+ R
Sbjct: 90 SLKVILVPWVGCDFIDGKLLRSKGITLCNIGPHAADHVTELAIFLAISCFR 140
>sp|Q07511|FDH_SOLTU Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1
PE=1 SV=2
Length = 381
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 36/67 (53%)
Query: 4 RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
+ +NL+++ T +G DH+ L + G+ V V ++ +VAE + + + R F G
Sbjct: 112 KKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPG 171
Query: 64 HNCIASG 70
H+ + +G
Sbjct: 172 HHQVING 178
>sp|P87228|SERA_SCHPO Putative D-3-phosphoglycerate dehydrogenase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC364.07 PE=1 SV=1
Length = 466
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
A ++L VI F +G + + LD RGI V +S +VAE IG I+++R+
Sbjct: 116 AADSLIVIGCFCIGTNQVDLDFAAERGIAVFNSPYANSRSVAELVIGYIISLARQ 170
>sp|A1JT62|GHRB_YERE8 Glyoxylate/hydroxypyruvate reductase B OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=ghrB PE=3
SV=1
Length = 326
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
L+ ST SVG+D+ +D + RGI + V ++ VA+ + L ++ +RR
Sbjct: 64 APKLRAASTISVGYDNFDVDALSQRGIALMHTPTVLTETVADTMMALVLSSARR 117
>sp|P44501|DDH_HAEIN 2-hydroxyacid dehydrogenase homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ddh PE=3
SV=1
Length = 331
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
A +K+++ G +++ L + GI+V V S +AVAE IGL + ++RR + +
Sbjct: 65 AALGVKIVALRCAGFNNVDLKAAQELGIQVVRVPAYSPEAVAEHTIGLMMTLNRRIHRAY 124
>sp|Q15QG8|PDXB_PSEA6 Erythronate-4-phosphate dehydrogenase OS=Pseudoalteromonas
atlantica (strain T6c / ATCC BAA-1087) GN=pdxB PE=3
SV=1
Length = 374
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 4 RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEF 48
+A +N+K + T + G +HL + ++SRG+ + + ++ AVAE+
Sbjct: 55 KANQNIKYVGTATAGTNHLDKEYLRSRGLDIHSAAGCNAVAVAEY 99
>sp|Q8NUT2|LDHD_STAAW D-lactate dehydrogenase OS=Staphylococcus aureus (strain MW2)
GN=ldhD PE=3 SV=2
Length = 330
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 9 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRF 60
+K I+ + G D LD K I + V S + +AE+++ +A+ + RRF
Sbjct: 70 IKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRF 121
>sp|P72357|LDHD_STAAU D-lactate dehydrogenase OS=Staphylococcus aureus GN=ldhD PE=1 SV=1
Length = 330
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 9 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRF 60
+K I+ + G D LD K I + V S + +AE+++ +A+ + RRF
Sbjct: 70 IKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRF 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.129 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,394,138
Number of Sequences: 539616
Number of extensions: 1066803
Number of successful extensions: 2870
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2742
Number of HSP's gapped (non-prelim): 140
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)