Query psy15800
Match_columns 109
No_of_seqs 177 out of 1005
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 21:40:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1052 LdhA Lactate dehydroge 100.0 1.2E-32 2.5E-37 200.4 10.0 106 2-108 61-179 (324)
2 PRK08410 2-hydroxyacid dehydro 100.0 6.3E-31 1.4E-35 190.6 10.3 104 5-108 60-178 (311)
3 COG0111 SerA Phosphoglycerate 100.0 7.1E-31 1.5E-35 191.1 10.1 104 5-108 63-175 (324)
4 PRK06487 glycerate dehydrogena 100.0 4E-30 8.6E-35 186.9 10.5 103 5-107 63-180 (317)
5 PRK15409 bifunctional glyoxyla 100.0 4.1E-30 8.8E-35 187.2 10.1 106 2-108 61-179 (323)
6 PRK11790 D-3-phosphoglycerate 100.0 4.7E-30 1E-34 191.8 10.1 104 5-108 72-184 (409)
7 PRK13243 glyoxylate reductase; 100.0 1.7E-29 3.6E-34 184.7 10.4 104 5-108 64-183 (333)
8 PRK06932 glycerate dehydrogena 100.0 1.8E-29 3.8E-34 183.3 10.1 104 5-108 62-180 (314)
9 TIGR01327 PGDH D-3-phosphoglyc 100.0 9E-29 2E-33 189.7 10.2 105 2-107 57-170 (525)
10 PLN03139 formate dehydrogenase 100.0 1.5E-28 3.3E-33 182.2 10.2 104 5-108 118-232 (386)
11 PRK07574 formate dehydrogenase 100.0 1.7E-28 3.6E-33 182.1 9.8 104 5-108 111-225 (385)
12 PRK13581 D-3-phosphoglycerate 100.0 2.2E-28 4.8E-33 187.6 10.4 106 2-108 59-173 (526)
13 PLN02306 hydroxypyruvate reduc 100.0 5.4E-28 1.2E-32 179.5 9.9 104 5-108 81-199 (386)
14 PLN02928 oxidoreductase family 99.9 5.5E-27 1.2E-31 172.2 10.3 101 5-107 79-191 (347)
15 PRK12480 D-lactate dehydrogena 99.9 5.3E-27 1.2E-31 171.3 9.1 104 5-108 64-179 (330)
16 PRK06436 glycerate dehydrogena 99.9 2.5E-26 5.3E-31 166.1 10.8 101 5-108 46-155 (303)
17 PRK08605 D-lactate dehydrogena 99.9 2.5E-26 5.4E-31 167.9 9.0 104 5-108 64-180 (332)
18 KOG0069|consensus 99.9 3.2E-26 6.9E-31 166.3 8.8 105 3-108 79-195 (336)
19 KOG0068|consensus 99.9 1.5E-26 3.2E-31 167.0 6.6 106 3-108 65-179 (406)
20 PRK15469 ghrA bifunctional gly 99.9 8.6E-24 1.9E-28 153.5 9.4 103 6-108 54-169 (312)
21 PRK15438 erythronate-4-phospha 99.9 2.7E-23 5.8E-28 153.9 9.7 93 6-108 56-149 (378)
22 PRK00257 erythronate-4-phospha 99.9 1.6E-22 3.6E-27 150.0 9.4 94 6-108 56-149 (381)
23 PF00389 2-Hacid_dh: D-isomer 99.6 1.6E-15 3.4E-20 97.7 2.8 45 5-49 57-101 (133)
24 KOG0067|consensus 99.5 5E-14 1.1E-18 103.3 3.9 105 5-109 92-212 (435)
25 PF02826 2-Hacid_dh_C: D-isome 99.4 3.4E-13 7.4E-18 90.9 3.8 59 50-108 1-69 (178)
26 TIGR02853 spore_dpaA dipicolin 99.1 6.9E-11 1.5E-15 85.2 4.5 88 9-108 90-184 (287)
27 PTZ00075 Adenosylhomocysteinas 98.7 1.5E-08 3.2E-13 77.4 5.2 85 14-107 197-286 (476)
28 PRK08306 dipicolinate synthase 98.1 5.7E-06 1.2E-10 60.0 5.5 90 5-108 90-185 (296)
29 PRK05476 S-adenosyl-L-homocyst 96.0 0.0033 7.2E-08 48.0 1.4 90 13-107 154-244 (425)
30 PRK13403 ketol-acid reductoiso 95.8 0.0085 1.8E-07 44.4 2.9 25 83-107 24-48 (335)
31 PLN02494 adenosylhomocysteinas 95.4 0.016 3.5E-07 44.8 3.1 25 84-108 263-287 (477)
32 PF00670 AdoHcyase_NAD: S-aden 94.5 0.037 8.1E-07 37.0 2.6 25 83-107 31-55 (162)
33 TIGR00936 ahcY adenosylhomocys 93.5 0.071 1.5E-06 40.6 2.9 24 84-107 204-227 (406)
34 cd01075 NAD_bind_Leu_Phe_Val_D 93.0 0.083 1.8E-06 36.3 2.3 26 83-108 36-61 (200)
35 cd00401 AdoHcyase S-adenosyl-L 91.1 0.22 4.8E-06 38.0 2.9 24 84-107 211-234 (413)
36 COG0027 PurT Formate-dependent 89.5 0.37 8.1E-06 35.9 2.8 25 84-108 21-45 (394)
37 TIGR00518 alaDH alanine dehydr 87.2 0.6 1.3E-05 35.0 2.8 24 84-107 176-199 (370)
38 TIGR02964 xanthine_xdhC xanthi 85.6 0.93 2E-05 32.2 2.9 25 84-108 109-133 (246)
39 PRK05479 ketol-acid reductoiso 84.0 1.1 2.4E-05 33.3 2.8 25 83-107 25-49 (330)
40 PF03720 UDPG_MGDP_dh_C: UDP-g 82.9 1.8 4E-05 26.4 3.1 29 80-108 12-40 (106)
41 PLN02545 3-hydroxybutyryl-CoA 82.8 1.1 2.4E-05 32.2 2.4 26 83-108 12-37 (295)
42 PRK14619 NAD(P)H-dependent gly 82.7 1.5 3.3E-05 31.8 3.1 26 83-108 12-37 (308)
43 PLN02712 arogenate dehydrogena 81.8 1.4 3.1E-05 35.7 2.9 24 84-107 378-401 (667)
44 PLN02256 arogenate dehydrogena 80.9 1.9 4E-05 31.6 3.0 25 83-107 44-68 (304)
45 TIGR02114 coaB_strep phosphopa 80.2 2.1 4.5E-05 29.9 2.9 24 83-106 24-47 (227)
46 cd01076 NAD_bind_1_Glu_DH NAD( 79.5 2.2 4.9E-05 29.9 2.9 23 83-105 39-61 (227)
47 PRK07066 3-hydroxybutyryl-CoA 79.4 1.7 3.8E-05 32.1 2.4 26 83-108 15-40 (321)
48 TIGR03325 BphB_TodD cis-2,3-di 78.5 2.3 5E-05 29.6 2.8 25 83-107 14-38 (262)
49 PRK08703 short chain dehydroge 78.3 2.5 5.5E-05 28.8 2.9 26 83-108 15-40 (239)
50 PRK06732 phosphopantothenate-- 77.4 2.8 6.1E-05 29.3 2.9 25 83-107 25-49 (229)
51 PRK08339 short chain dehydroge 77.3 3.2 6.9E-05 29.1 3.2 24 84-107 18-41 (263)
52 PF00070 Pyr_redox: Pyridine n 77.2 4.2 9.1E-05 23.2 3.2 25 84-108 8-32 (80)
53 PRK05786 fabG 3-ketoacyl-(acyl 77.0 2.4 5.3E-05 28.7 2.5 26 83-108 14-39 (238)
54 PRK06523 short chain dehydroge 76.6 3.2 7E-05 28.7 3.0 25 83-107 18-42 (260)
55 PRK06483 dihydromonapterin red 76.3 3.5 7.5E-05 28.1 3.1 26 83-108 11-36 (236)
56 TIGR00465 ilvC ketol-acid redu 76.1 3.1 6.6E-05 30.7 2.9 24 83-106 11-34 (314)
57 PRK08265 short chain dehydroge 76.0 3.1 6.7E-05 29.0 2.8 26 83-108 15-40 (261)
58 PRK00683 murD UDP-N-acetylmura 75.9 3.4 7.3E-05 31.3 3.2 26 83-108 11-36 (418)
59 PLN02653 GDP-mannose 4,6-dehyd 75.8 3.9 8.4E-05 29.6 3.4 25 83-107 15-39 (340)
60 COG0499 SAM1 S-adenosylhomocys 75.5 2.7 5.9E-05 31.9 2.5 22 84-105 218-239 (420)
61 PRK06180 short chain dehydroge 75.4 3 6.4E-05 29.3 2.6 26 82-107 12-37 (277)
62 PRK07890 short chain dehydroge 75.3 3.8 8.1E-05 28.2 3.1 26 83-108 14-39 (258)
63 PLN02712 arogenate dehydrogena 75.2 3.1 6.7E-05 33.8 2.9 25 83-107 60-84 (667)
64 PRK06114 short chain dehydroge 75.0 4.1 8.9E-05 28.2 3.2 25 83-107 17-41 (254)
65 PRK07326 short chain dehydroge 74.9 3.9 8.4E-05 27.7 3.0 25 83-107 15-39 (237)
66 PF01262 AlaDh_PNT_C: Alanine 74.5 3.5 7.5E-05 27.2 2.6 24 84-107 29-52 (168)
67 PRK06035 3-hydroxyacyl-CoA deh 74.2 2.8 6E-05 30.1 2.3 26 83-108 11-36 (291)
68 PRK06398 aldose dehydrogenase; 74.2 4.3 9.2E-05 28.3 3.2 25 83-107 15-39 (258)
69 PRK07523 gluconate 5-dehydroge 74.1 4.1 9E-05 28.1 3.1 25 83-107 19-43 (255)
70 PRK06841 short chain dehydroge 74.0 3.8 8.3E-05 28.1 2.9 25 83-107 24-48 (255)
71 PRK09620 hypothetical protein; 73.9 4 8.7E-05 28.7 2.9 24 83-106 28-51 (229)
72 PRK12384 sorbitol-6-phosphate 73.5 3.8 8.2E-05 28.3 2.8 25 83-107 11-35 (259)
73 PRK12828 short chain dehydroge 73.4 4.2 9.2E-05 27.4 2.9 25 83-107 16-40 (239)
74 PRK06949 short chain dehydroge 73.1 3.3 7.2E-05 28.4 2.4 25 83-107 18-42 (258)
75 PRK12823 benD 1,6-dihydroxycyc 73.1 4.6 0.0001 27.8 3.1 25 83-107 17-41 (260)
76 PRK06194 hypothetical protein; 73.0 3.9 8.6E-05 28.7 2.8 25 83-107 15-39 (287)
77 PRK07533 enoyl-(acyl carrier p 73.0 4.7 0.0001 28.1 3.2 23 85-107 23-45 (258)
78 PLN02253 xanthoxin dehydrogena 72.7 3.9 8.5E-05 28.6 2.7 24 84-107 28-51 (280)
79 PRK06179 short chain dehydroge 72.5 4.3 9.4E-05 28.2 2.9 26 82-107 12-37 (270)
80 PRK07577 short chain dehydroge 72.5 5.5 0.00012 26.9 3.3 27 82-108 11-37 (234)
81 PRK12745 3-ketoacyl-(acyl-carr 72.1 5 0.00011 27.5 3.1 25 83-107 11-35 (256)
82 PRK07035 short chain dehydroge 72.0 3.8 8.3E-05 28.1 2.5 25 83-107 17-41 (252)
83 KOG0725|consensus 72.0 4.2 9E-05 29.2 2.7 24 85-108 19-42 (270)
84 PRK07067 sorbitol dehydrogenas 71.9 4.4 9.5E-05 28.0 2.8 26 83-108 15-40 (257)
85 PRK07831 short chain dehydroge 71.9 4.7 0.0001 27.9 2.9 23 85-107 29-51 (262)
86 PRK06200 2,3-dihydroxy-2,3-dih 71.8 3.9 8.5E-05 28.4 2.5 25 83-107 15-39 (263)
87 PRK08085 gluconate 5-dehydroge 71.8 4.4 9.4E-05 27.9 2.7 24 84-107 19-42 (254)
88 PRK07454 short chain dehydroge 71.7 3.9 8.5E-05 27.9 2.5 25 83-107 15-39 (241)
89 PRK07856 short chain dehydroge 71.6 4.9 0.00011 27.7 3.0 26 83-108 15-40 (252)
90 PRK06182 short chain dehydroge 71.6 4.1 8.9E-05 28.5 2.6 26 82-107 11-36 (273)
91 PRK07062 short chain dehydroge 71.6 4.6 9.9E-05 28.0 2.8 24 84-107 18-41 (265)
92 PRK07231 fabG 3-ketoacyl-(acyl 71.5 5.1 0.00011 27.3 3.0 27 82-108 13-39 (251)
93 PLN02272 glyceraldehyde-3-phos 71.3 4.6 0.0001 31.1 2.9 25 83-107 93-119 (421)
94 PRK08993 2-deoxy-D-gluconate 3 71.3 5.2 0.00011 27.6 3.0 25 83-107 19-43 (253)
95 PRK06172 short chain dehydroge 71.0 4.6 9.9E-05 27.8 2.7 25 83-107 16-40 (253)
96 PRK12367 short chain dehydroge 71.0 5.4 0.00012 27.9 3.1 25 84-108 24-48 (245)
97 PRK07806 short chain dehydroge 70.9 6 0.00013 27.0 3.3 25 83-107 15-39 (248)
98 PRK07074 short chain dehydroge 70.9 4.7 0.0001 27.8 2.7 25 83-107 11-35 (257)
99 cd05313 NAD_bind_2_Glu_DH NAD( 70.8 5.1 0.00011 28.7 2.9 23 83-105 46-68 (254)
100 PF03807 F420_oxidored: NADP o 70.8 3.8 8.3E-05 24.0 2.0 26 83-108 7-36 (96)
101 PRK09186 flagellin modificatio 70.6 5 0.00011 27.5 2.8 26 82-107 12-37 (256)
102 PRK09135 pteridine reductase; 70.5 5.7 0.00012 26.9 3.1 25 83-107 15-39 (249)
103 PRK07904 short chain dehydroge 70.4 5.6 0.00012 27.7 3.1 25 84-108 18-43 (253)
104 PRK05993 short chain dehydroge 70.4 4.5 9.7E-05 28.5 2.6 26 83-108 13-38 (277)
105 PRK01710 murD UDP-N-acetylmura 70.4 5.5 0.00012 30.6 3.2 24 84-107 23-46 (458)
106 PRK08017 oxidoreductase; Provi 70.4 4.9 0.00011 27.6 2.7 25 83-107 11-35 (256)
107 PRK05867 short chain dehydroge 70.3 4.7 0.0001 27.8 2.7 24 84-107 19-42 (253)
108 KOG1200|consensus 70.2 5.7 0.00012 28.0 2.9 24 85-108 25-48 (256)
109 PRK07576 short chain dehydroge 70.2 5.8 0.00013 27.7 3.1 25 83-107 18-42 (264)
110 PRK08278 short chain dehydroge 70.0 6 0.00013 27.8 3.2 25 83-107 15-39 (273)
111 PRK06550 fabG 3-ketoacyl-(acyl 69.8 6.6 0.00014 26.6 3.3 25 83-107 14-38 (235)
112 PRK08264 short chain dehydroge 69.6 5.2 0.00011 27.2 2.7 26 83-108 15-41 (238)
113 PRK06500 short chain dehydroge 69.3 6.4 0.00014 26.8 3.1 25 83-107 15-39 (249)
114 TIGR02622 CDP_4_6_dhtase CDP-g 69.3 5.8 0.00013 28.9 3.0 25 83-107 13-37 (349)
115 PRK08251 short chain dehydroge 69.2 4.8 0.0001 27.5 2.5 25 83-107 11-35 (248)
116 PRK07063 short chain dehydroge 69.2 5.5 0.00012 27.5 2.8 25 83-107 16-40 (260)
117 PRK12939 short chain dehydroge 69.1 5.4 0.00012 27.2 2.7 25 83-107 16-40 (250)
118 PRK03803 murD UDP-N-acetylmura 69.0 5.7 0.00012 30.2 3.0 24 84-107 15-38 (448)
119 PRK14618 NAD(P)H-dependent gly 69.0 4.4 9.5E-05 29.5 2.4 26 83-108 12-37 (328)
120 PRK06125 short chain dehydroge 69.0 6.1 0.00013 27.3 3.0 24 84-107 17-40 (259)
121 PRK08862 short chain dehydroge 68.9 5.4 0.00012 27.4 2.7 25 84-108 15-39 (227)
122 PRK09291 short chain dehydroge 68.9 6.3 0.00014 27.0 3.0 25 83-107 11-35 (257)
123 PRK07814 short chain dehydroge 68.5 6.7 0.00015 27.3 3.1 25 83-107 19-43 (263)
124 PRK07825 short chain dehydroge 68.4 5 0.00011 28.0 2.5 25 83-107 14-38 (273)
125 PRK12481 2-deoxy-D-gluconate 3 68.4 6.5 0.00014 27.2 3.0 24 84-107 18-41 (251)
126 PRK05717 oxidoreductase; Valid 68.4 6.4 0.00014 27.1 3.0 25 83-107 19-43 (255)
127 PRK12829 short chain dehydroge 68.3 6.2 0.00013 27.1 2.9 25 83-107 20-44 (264)
128 PRK05866 short chain dehydroge 68.3 4.9 0.00011 28.8 2.4 24 84-107 50-73 (293)
129 PRK07478 short chain dehydroge 68.2 5.9 0.00013 27.3 2.8 25 83-107 15-39 (254)
130 PLN02780 ketoreductase/ oxidor 68.2 4.2 9.1E-05 29.6 2.1 25 84-108 63-87 (320)
131 PRK08217 fabG 3-ketoacyl-(acyl 68.1 6.4 0.00014 26.8 2.9 25 83-107 14-38 (253)
132 PRK07666 fabG 3-ketoacyl-(acyl 68.1 5.4 0.00012 27.1 2.6 25 83-107 16-40 (239)
133 PRK07530 3-hydroxybutyryl-CoA 67.9 4.7 0.0001 28.9 2.3 26 83-108 12-37 (292)
134 PRK07024 short chain dehydroge 67.7 5.1 0.00011 27.7 2.4 25 83-107 11-35 (257)
135 PRK07819 3-hydroxybutyryl-CoA 67.6 5 0.00011 28.9 2.4 26 83-108 13-38 (286)
136 TIGR01832 kduD 2-deoxy-D-gluco 67.5 7.1 0.00015 26.7 3.1 25 83-107 14-38 (248)
137 KOG1209|consensus 67.4 7.6 0.00016 27.8 3.1 26 83-108 17-42 (289)
138 PRK06196 oxidoreductase; Provi 67.4 5.6 0.00012 28.6 2.6 24 84-107 36-59 (315)
139 PRK06171 sorbitol-6-phosphate 67.4 8 0.00017 26.8 3.3 26 83-108 18-43 (266)
140 PRK05876 short chain dehydroge 67.3 7.1 0.00015 27.6 3.1 25 83-107 15-39 (275)
141 PRK06079 enoyl-(acyl carrier p 67.2 7.6 0.00016 26.9 3.2 24 84-107 19-42 (252)
142 PRK08277 D-mannonate oxidoredu 67.1 6.1 0.00013 27.6 2.7 24 84-107 20-43 (278)
143 cd01065 NAD_bind_Shikimate_DH 66.8 5.7 0.00012 25.3 2.3 25 84-108 28-53 (155)
144 PRK09072 short chain dehydroge 66.7 7.5 0.00016 26.9 3.1 25 83-107 14-38 (263)
145 PRK06138 short chain dehydroge 66.5 6.6 0.00014 26.8 2.7 25 83-107 14-38 (252)
146 PRK05875 short chain dehydroge 66.5 6.9 0.00015 27.3 2.9 25 83-107 16-40 (276)
147 PF01488 Shikimate_DH: Shikima 66.4 4.4 9.6E-05 25.8 1.7 25 84-108 21-46 (135)
148 PLN02657 3,8-divinyl protochlo 66.1 7 0.00015 29.4 3.0 25 84-108 70-94 (390)
149 PRK06057 short chain dehydroge 66.1 6.7 0.00015 27.0 2.7 25 83-107 16-40 (255)
150 PRK08945 putative oxoacyl-(acy 66.1 6.9 0.00015 26.8 2.8 25 83-107 21-45 (247)
151 cd05211 NAD_bind_Glu_Leu_Phe_V 65.9 7.2 0.00016 27.1 2.8 22 83-104 31-52 (217)
152 PRK08213 gluconate 5-dehydroge 65.7 8.1 0.00017 26.7 3.1 25 83-107 21-45 (259)
153 PRK07531 bifunctional 3-hydrox 65.5 5.5 0.00012 31.0 2.4 26 83-108 12-37 (495)
154 TIGR03206 benzo_BadH 2-hydroxy 65.1 8.1 0.00018 26.3 3.0 25 83-107 12-36 (250)
155 PRK12429 3-hydroxybutyrate deh 65.0 7.1 0.00015 26.7 2.7 27 81-107 11-37 (258)
156 PLN03209 translocon at the inn 64.9 6.4 0.00014 31.6 2.6 24 84-107 90-113 (576)
157 PRK07774 short chain dehydroge 64.8 7.3 0.00016 26.6 2.7 25 83-107 15-39 (250)
158 PRK05579 bifunctional phosphop 64.8 7.9 0.00017 29.5 3.0 24 84-107 214-237 (399)
159 PRK06124 gluconate 5-dehydroge 64.8 8.6 0.00019 26.4 3.1 25 83-107 20-44 (256)
160 cd05191 NAD_bind_amino_acid_DH 64.8 9.7 0.00021 22.1 2.9 23 84-106 32-55 (86)
161 PRK02472 murD UDP-N-acetylmura 64.7 7.8 0.00017 29.4 3.0 24 84-107 14-37 (447)
162 PRK08589 short chain dehydroge 64.6 8.6 0.00019 26.9 3.1 25 83-107 15-39 (272)
163 PRK08643 acetoin reductase; Va 64.3 8.9 0.00019 26.3 3.0 25 83-107 11-35 (256)
164 PRK05653 fabG 3-ketoacyl-(acyl 64.2 8.1 0.00017 26.0 2.8 26 83-108 14-39 (246)
165 PRK06130 3-hydroxybutyryl-CoA 64.0 6.2 0.00014 28.5 2.3 26 83-108 12-37 (311)
166 PRK08226 short chain dehydroge 64.0 9 0.0002 26.4 3.1 25 83-107 15-39 (263)
167 PRK14106 murD UDP-N-acetylmura 63.9 8.1 0.00018 29.3 3.0 24 84-107 14-37 (450)
168 PRK06914 short chain dehydroge 63.6 8.1 0.00018 27.0 2.8 25 83-107 12-36 (280)
169 PRK00258 aroE shikimate 5-dehy 63.5 6.4 0.00014 28.2 2.3 25 84-108 132-157 (278)
170 PRK08818 prephenate dehydrogen 63.3 8.6 0.00019 29.1 3.0 27 81-107 11-38 (370)
171 KOG0023|consensus 63.2 8.1 0.00018 29.0 2.7 23 85-107 192-214 (360)
172 PRK15181 Vi polysaccharide bio 63.1 12 0.00025 27.5 3.6 25 83-107 24-48 (348)
173 PLN00141 Tic62-NAD(P)-related 62.9 8.9 0.00019 26.6 2.9 24 84-107 27-50 (251)
174 PRK06935 2-deoxy-D-gluconate 3 62.9 9.8 0.00021 26.2 3.1 24 84-107 25-48 (258)
175 PRK09414 glutamate dehydrogena 62.8 8.3 0.00018 29.9 2.9 21 84-104 241-261 (445)
176 PRK06113 7-alpha-hydroxysteroi 62.8 8.3 0.00018 26.6 2.7 24 84-107 21-44 (255)
177 PRK07889 enoyl-(acyl carrier p 62.8 10 0.00022 26.4 3.2 24 84-107 19-42 (256)
178 PRK06197 short chain dehydroge 62.7 10 0.00022 27.1 3.2 24 84-107 26-49 (306)
179 PRK14030 glutamate dehydrogena 62.7 8.8 0.00019 29.8 3.0 20 84-103 237-256 (445)
180 PLN02350 phosphogluconate dehy 62.7 7.1 0.00015 30.7 2.5 26 83-108 14-39 (493)
181 PRK08415 enoyl-(acyl carrier p 62.7 11 0.00023 26.8 3.2 24 84-107 17-40 (274)
182 PRK06198 short chain dehydroge 62.7 7.7 0.00017 26.7 2.5 25 83-107 15-40 (260)
183 PRK05872 short chain dehydroge 62.6 7.4 0.00016 27.7 2.5 25 83-107 18-42 (296)
184 PRK08628 short chain dehydroge 62.4 9.3 0.0002 26.3 2.9 25 83-107 16-40 (258)
185 PRK05808 3-hydroxybutyryl-CoA 61.7 6.5 0.00014 28.0 2.0 26 83-108 11-36 (282)
186 PRK07097 gluconate 5-dehydroge 61.7 9.3 0.0002 26.5 2.8 24 84-107 20-43 (265)
187 PRK07060 short chain dehydroge 61.6 8.4 0.00018 26.1 2.5 24 84-107 19-42 (245)
188 PRK06139 short chain dehydroge 61.6 7.6 0.00016 28.5 2.4 25 83-107 16-40 (330)
189 PLN02662 cinnamyl-alcohol dehy 61.5 9.6 0.00021 27.1 2.9 27 81-107 11-37 (322)
190 PLN02858 fructose-bisphosphate 61.5 6.4 0.00014 34.7 2.2 25 84-108 333-357 (1378)
191 PRK12742 oxidoreductase; Provi 61.4 11 0.00023 25.5 3.0 24 83-106 15-38 (237)
192 cd01078 NAD_bind_H4MPT_DH NADP 61.4 11 0.00024 25.2 3.0 24 84-107 38-61 (194)
193 PRK08303 short chain dehydroge 60.9 11 0.00023 27.3 3.1 24 84-107 18-41 (305)
194 PRK06505 enoyl-(acyl carrier p 60.8 11 0.00024 26.6 3.0 23 85-107 20-42 (271)
195 PRK06720 hypothetical protein; 60.8 10 0.00022 25.2 2.7 24 84-107 26-49 (169)
196 PRK12826 3-ketoacyl-(acyl-carr 60.8 12 0.00026 25.4 3.2 25 83-107 15-39 (251)
197 PRK08594 enoyl-(acyl carrier p 60.7 12 0.00026 26.1 3.2 23 84-106 19-41 (257)
198 PRK11199 tyrA bifunctional cho 60.7 9.9 0.00021 28.6 2.9 25 83-107 107-131 (374)
199 PRK07502 cyclohexadienyl dehyd 60.7 7.7 0.00017 28.0 2.3 26 83-108 14-41 (307)
200 PLN02695 GDP-D-mannose-3',5'-e 60.4 11 0.00024 28.0 3.1 25 83-107 30-54 (370)
201 PRK09242 tropinone reductase; 60.2 11 0.00024 26.0 2.9 25 83-107 18-42 (257)
202 PRK07791 short chain dehydroge 60.0 12 0.00026 26.6 3.1 25 83-107 15-39 (286)
203 TIGR00521 coaBC_dfp phosphopan 60.0 12 0.00026 28.5 3.2 23 84-106 211-233 (390)
204 PRK12824 acetoacetyl-CoA reduc 59.6 12 0.00026 25.3 3.0 25 83-107 11-35 (245)
205 PRK13394 3-hydroxybutyrate deh 59.5 12 0.00025 25.7 3.0 26 83-108 16-41 (262)
206 PRK08293 3-hydroxybutyryl-CoA 59.5 8.6 0.00019 27.5 2.3 26 83-108 11-36 (287)
207 PRK12748 3-ketoacyl-(acyl-carr 59.5 12 0.00026 25.7 3.1 24 84-107 17-40 (256)
208 PRK08642 fabG 3-ketoacyl-(acyl 59.4 12 0.00026 25.5 3.0 23 83-105 14-36 (253)
209 PRK07424 bifunctional sterol d 59.3 9.5 0.00021 29.1 2.6 24 84-107 188-211 (406)
210 PRK08690 enoyl-(acyl carrier p 59.2 13 0.00028 25.9 3.2 23 84-106 18-40 (261)
211 PRK02006 murD UDP-N-acetylmura 58.8 11 0.00025 29.1 3.0 25 83-107 15-39 (498)
212 PRK07109 short chain dehydroge 58.8 9 0.0002 28.0 2.4 25 83-107 17-41 (334)
213 TIGR01035 hemA glutamyl-tRNA r 58.5 8.5 0.00019 29.3 2.3 25 84-108 189-214 (417)
214 KOG1207|consensus 58.4 11 0.00024 26.1 2.6 24 85-108 18-41 (245)
215 PRK08159 enoyl-(acyl carrier p 58.4 14 0.0003 26.1 3.2 23 84-106 22-44 (272)
216 PRK05854 short chain dehydroge 58.4 10 0.00022 27.4 2.6 24 84-107 24-47 (313)
217 KOG1370|consensus 58.3 9.4 0.0002 28.7 2.3 21 84-104 223-243 (434)
218 PRK12747 short chain dehydroge 58.2 13 0.00028 25.5 3.0 23 83-105 13-35 (252)
219 PRK00421 murC UDP-N-acetylmura 58.1 12 0.00025 28.7 3.0 24 84-107 16-40 (461)
220 PRK08936 glucose-1-dehydrogena 57.9 13 0.00028 25.7 3.0 24 83-106 16-39 (261)
221 PRK06484 short chain dehydroge 57.9 10 0.00022 29.1 2.7 24 84-107 15-38 (520)
222 PLN02989 cinnamyl-alcohol dehy 57.8 13 0.00027 26.7 3.0 25 83-107 14-38 (325)
223 PRK08220 2,3-dihydroxybenzoate 57.8 13 0.00029 25.3 3.0 25 83-107 17-41 (252)
224 PLN02572 UDP-sulfoquinovose sy 57.8 12 0.00025 28.7 2.9 23 84-106 57-79 (442)
225 PRK06463 fabG 3-ketoacyl-(acyl 57.6 13 0.00029 25.5 3.0 24 83-106 16-39 (255)
226 PRK08416 7-alpha-hydroxysteroi 57.6 13 0.00028 25.8 2.9 23 84-106 18-40 (260)
227 PRK06482 short chain dehydroge 57.4 10 0.00022 26.4 2.4 25 83-107 11-35 (276)
228 PRK07985 oxidoreductase; Provi 57.3 15 0.00033 26.2 3.3 23 84-106 59-81 (294)
229 PRK14031 glutamate dehydrogena 57.0 13 0.00028 28.9 3.0 23 84-106 237-259 (444)
230 PRK12827 short chain dehydroge 56.6 15 0.00033 24.8 3.1 24 83-106 15-38 (249)
231 PRK11064 wecC UDP-N-acetyl-D-m 56.5 11 0.00024 28.7 2.6 26 83-108 11-36 (415)
232 PRK03369 murD UDP-N-acetylmura 56.4 13 0.00028 28.9 3.0 24 84-107 21-44 (488)
233 PRK07453 protochlorophyllide o 56.1 15 0.00032 26.5 3.1 25 83-107 15-39 (322)
234 PLN00016 RNA-binding protein; 56.0 13 0.00029 27.5 2.9 26 83-108 65-90 (378)
235 PRK10669 putative cation:proto 55.9 9.2 0.0002 30.1 2.1 25 84-108 426-450 (558)
236 PRK05565 fabG 3-ketoacyl-(acyl 55.7 13 0.00028 25.1 2.7 25 83-107 14-39 (247)
237 PRK12859 3-ketoacyl-(acyl-carr 55.4 17 0.00036 25.2 3.2 21 85-105 19-39 (256)
238 COG0300 DltE Short-chain dehyd 55.3 15 0.00032 26.6 2.9 26 83-108 15-40 (265)
239 PRK06997 enoyl-(acyl carrier p 55.2 16 0.00035 25.5 3.1 23 84-106 18-40 (260)
240 PRK00141 murD UDP-N-acetylmura 55.2 13 0.00029 28.6 2.9 24 84-107 24-47 (473)
241 PRK05472 redox-sensing transcr 55.2 8.1 0.00018 26.5 1.5 59 39-106 57-118 (213)
242 TIGR00507 aroE shikimate 5-deh 55.1 12 0.00026 26.6 2.5 25 84-108 126-150 (270)
243 PRK07792 fabG 3-ketoacyl-(acyl 54.9 16 0.00035 26.2 3.2 24 84-107 22-45 (306)
244 PRK09310 aroDE bifunctional 3- 54.7 11 0.00023 29.4 2.3 24 84-107 341-364 (477)
245 cd08296 CAD_like Cinnamyl alco 54.5 14 0.0003 26.6 2.8 25 83-107 172-196 (333)
246 PLN02583 cinnamoyl-CoA reducta 54.4 16 0.00034 26.1 3.0 24 83-106 15-38 (297)
247 PRK01390 murD UDP-N-acetylmura 54.4 14 0.00031 28.2 2.9 24 84-107 18-41 (460)
248 cd08288 MDR_yhdh Yhdh putative 54.3 14 0.0003 26.2 2.7 23 84-106 157-179 (324)
249 PRK09424 pntA NAD(P) transhydr 54.3 13 0.00028 29.3 2.7 25 84-108 174-198 (509)
250 PLN02477 glutamate dehydrogena 53.9 15 0.00033 28.2 2.9 22 83-104 214-235 (410)
251 PRK06603 enoyl-(acyl carrier p 53.9 17 0.00037 25.3 3.0 23 85-107 21-43 (260)
252 PRK00045 hemA glutamyl-tRNA re 53.9 11 0.00024 28.8 2.2 25 84-108 191-216 (423)
253 PF11798 IMS_HHH: IMS family H 53.8 9.9 0.00021 18.2 1.3 14 85-98 18-31 (32)
254 PRK07984 enoyl-(acyl carrier p 53.6 18 0.00039 25.4 3.2 23 85-107 19-41 (262)
255 PRK07370 enoyl-(acyl carrier p 53.5 20 0.00043 24.9 3.3 22 84-105 18-39 (258)
256 PRK07775 short chain dehydroge 53.5 18 0.00038 25.4 3.1 25 83-107 19-43 (274)
257 PRK08263 short chain dehydroge 53.4 14 0.0003 25.9 2.5 26 82-107 11-36 (275)
258 PLN02650 dihydroflavonol-4-red 53.1 16 0.00034 26.7 2.8 27 81-107 12-38 (351)
259 PRK06701 short chain dehydroge 53.0 18 0.00039 25.7 3.1 24 84-107 56-79 (290)
260 PRK05855 short chain dehydroge 52.9 16 0.00034 28.2 3.0 24 84-107 325-348 (582)
261 cd08295 double_bond_reductase_ 52.9 13 0.00028 26.8 2.4 24 84-107 162-185 (338)
262 PLN02166 dTDP-glucose 4,6-dehy 52.6 16 0.00035 28.0 2.9 24 84-107 130-153 (436)
263 PRK04308 murD UDP-N-acetylmura 52.2 18 0.00038 27.6 3.1 24 84-107 14-37 (445)
264 PRK09496 trkA potassium transp 52.2 13 0.00028 28.1 2.3 25 84-108 240-264 (453)
265 PRK06719 precorrin-2 dehydroge 52.1 19 0.00041 23.7 2.9 24 84-107 22-45 (157)
266 PF00208 ELFV_dehydrog: Glutam 51.7 15 0.00033 26.0 2.5 22 83-104 40-61 (244)
267 PRK12743 oxidoreductase; Provi 51.5 20 0.00043 24.7 3.1 23 83-105 11-33 (256)
268 cd08245 CAD Cinnamyl alcohol d 51.2 16 0.00034 26.1 2.6 24 84-107 172-195 (330)
269 PRK14982 acyl-ACP reductase; P 51.1 31 0.00067 25.9 4.1 24 84-107 165-190 (340)
270 COG1064 AdhP Zn-dependent alco 51.1 18 0.00039 27.1 2.9 25 84-108 176-200 (339)
271 PF00861 Ribosomal_L18p: Ribos 50.9 20 0.00043 22.6 2.7 24 85-108 75-98 (119)
272 cd01977 Nitrogenase_VFe_alpha 50.9 87 0.0019 23.8 6.6 40 5-44 85-135 (415)
273 PLN02240 UDP-glucose 4-epimera 50.7 21 0.00045 25.8 3.2 24 83-106 14-37 (352)
274 PRK14806 bifunctional cyclohex 50.5 16 0.00035 29.7 2.7 26 83-108 11-38 (735)
275 TIGR02822 adh_fam_2 zinc-bindi 50.3 18 0.00038 26.3 2.7 24 84-107 175-198 (329)
276 PRK04148 hypothetical protein; 50.2 19 0.00042 23.3 2.6 24 84-108 26-49 (134)
277 cd08294 leukotriene_B4_DH_like 50.2 16 0.00034 26.0 2.4 23 84-106 154-176 (329)
278 cd00432 Ribosomal_L18_L5e Ribo 50.1 21 0.00047 21.6 2.7 23 85-107 61-83 (103)
279 PRK12744 short chain dehydroge 50.0 22 0.00048 24.4 3.1 23 83-105 17-39 (257)
280 PRK12935 acetoacetyl-CoA reduc 50.0 21 0.00045 24.3 2.9 23 83-105 15-37 (247)
281 PRK08268 3-hydroxy-acyl-CoA de 49.9 14 0.00031 29.0 2.3 25 84-108 16-40 (507)
282 PRK06484 short chain dehydroge 49.6 16 0.00034 28.2 2.5 24 84-107 279-302 (520)
283 PLN02896 cinnamyl-alcohol dehy 49.6 19 0.0004 26.3 2.8 25 83-107 19-43 (353)
284 TIGR00561 pntA NAD(P) transhyd 49.6 19 0.00041 28.5 2.9 25 84-108 173-197 (511)
285 cd08289 MDR_yhfp_like Yhfp put 49.4 18 0.00039 25.6 2.7 24 84-107 157-180 (326)
286 PRK08063 enoyl-(acyl carrier p 49.4 16 0.00036 24.8 2.4 22 82-103 12-33 (250)
287 COG3967 DltE Short-chain dehyd 49.4 22 0.00048 25.2 2.9 23 85-107 16-38 (245)
288 COG3867 Arabinogalactan endo-1 49.2 16 0.00034 27.4 2.3 18 86-103 105-122 (403)
289 PF13241 NAD_binding_7: Putati 49.2 20 0.00042 21.6 2.4 24 84-107 16-39 (103)
290 PRK05557 fabG 3-ketoacyl-(acyl 49.2 23 0.00049 23.8 3.0 24 83-106 14-37 (248)
291 TIGR02279 PaaC-3OHAcCoADH 3-hy 49.1 14 0.00031 28.9 2.2 26 83-108 13-38 (503)
292 COG0334 GdhA Glutamate dehydro 49.1 20 0.00042 27.7 2.8 24 84-107 216-239 (411)
293 PF11430 EGL-1: Programmed cel 48.9 15 0.00033 16.0 1.4 16 85-100 2-17 (21)
294 TIGR02825 B4_12hDH leukotriene 48.9 22 0.00047 25.5 3.0 24 84-107 149-172 (325)
295 PRK01438 murD UDP-N-acetylmura 48.8 20 0.00043 27.5 2.9 24 84-107 25-48 (480)
296 cd05283 CAD1 Cinnamyl alcohol 48.8 19 0.0004 26.0 2.7 25 83-107 178-202 (337)
297 PRK12936 3-ketoacyl-(acyl-carr 48.7 20 0.00044 24.2 2.7 25 83-107 15-39 (245)
298 PRK12548 shikimate 5-dehydroge 48.5 19 0.00042 25.9 2.7 25 84-108 135-160 (289)
299 PTZ00079 NADP-specific glutama 48.4 21 0.00044 27.9 2.9 21 84-104 246-266 (454)
300 PLN02730 enoyl-[acyl-carrier-p 48.2 23 0.00049 25.9 3.0 19 85-103 22-40 (303)
301 cd08292 ETR_like_2 2-enoyl thi 48.2 18 0.00039 25.6 2.5 23 84-106 150-172 (324)
302 KOG1687|consensus 48.1 43 0.00093 22.0 3.9 61 5-67 95-163 (168)
303 PF04127 DFP: DNA / pantothena 48.1 22 0.00048 24.1 2.8 24 83-106 28-51 (185)
304 PRK06128 oxidoreductase; Provi 47.7 26 0.00057 24.9 3.3 23 84-106 65-87 (300)
305 PRK03659 glutathione-regulated 47.6 15 0.00032 29.4 2.1 25 84-108 409-433 (601)
306 COG1249 Lpd Pyruvate/2-oxoglut 47.5 21 0.00046 27.7 2.9 25 84-108 182-206 (454)
307 PRK12825 fabG 3-ketoacyl-(acyl 47.4 24 0.00053 23.6 3.0 24 83-106 15-38 (249)
308 COG1004 Ugd Predicted UDP-gluc 47.3 22 0.00047 27.4 2.8 23 85-107 330-352 (414)
309 PRK09134 short chain dehydroge 47.3 25 0.00053 24.2 3.0 23 84-106 19-41 (258)
310 PRK03562 glutathione-regulated 47.2 15 0.00033 29.5 2.2 24 84-107 409-432 (621)
311 cd08301 alcohol_DH_plants Plan 46.7 20 0.00042 26.3 2.5 24 84-107 197-221 (369)
312 PRK06123 short chain dehydroge 46.6 24 0.00052 23.9 2.9 23 83-105 11-33 (248)
313 PLN03154 putative allyl alcoho 46.5 25 0.00053 25.8 3.0 24 84-107 169-192 (348)
314 cd05280 MDR_yhdh_yhfp Yhdh and 46.2 21 0.00045 25.2 2.6 24 84-107 157-180 (325)
315 cd08239 THR_DH_like L-threonin 46.2 17 0.00037 26.2 2.1 24 84-107 173-197 (339)
316 COG4221 Short-chain alcohol de 46.1 23 0.00049 25.4 2.6 25 84-108 16-40 (246)
317 PRK08261 fabG 3-ketoacyl-(acyl 45.8 25 0.00053 26.7 3.0 23 84-106 220-242 (450)
318 PRK12937 short chain dehydroge 45.8 26 0.00056 23.7 2.9 24 83-106 14-37 (245)
319 PRK07201 short chain dehydroge 45.8 18 0.0004 28.6 2.4 24 84-107 381-404 (657)
320 TIGR03366 HpnZ_proposed putati 45.8 18 0.00038 25.5 2.1 24 84-107 130-154 (280)
321 CHL00139 rpl18 ribosomal prote 45.7 28 0.00061 21.7 2.8 24 84-107 64-87 (109)
322 COG0771 MurD UDP-N-acetylmuram 45.7 25 0.00055 27.4 3.0 25 83-107 15-39 (448)
323 PRK06249 2-dehydropantoate 2-r 45.7 26 0.00055 25.4 3.0 25 83-107 13-37 (313)
324 PRK04690 murD UDP-N-acetylmura 45.5 24 0.00051 27.3 2.9 23 84-106 17-39 (468)
325 PLN02178 cinnamyl-alcohol dehy 45.5 23 0.00051 26.3 2.8 24 84-107 188-211 (375)
326 PRK08324 short chain dehydroge 45.5 22 0.00048 28.8 2.8 24 84-107 432-455 (681)
327 PLN02206 UDP-glucuronate decar 45.3 23 0.00051 27.2 2.8 23 84-106 129-151 (442)
328 cd08244 MDR_enoyl_red Possible 45.1 22 0.00048 25.1 2.5 25 83-107 152-176 (324)
329 PLN02214 cinnamoyl-CoA reducta 45.0 26 0.00055 25.6 2.9 25 83-107 19-43 (342)
330 PRK12938 acetyacetyl-CoA reduc 44.8 29 0.00063 23.5 3.0 22 83-104 12-33 (246)
331 TIGR02632 RhaD_aldol-ADH rhamn 44.6 25 0.00055 28.5 3.0 24 84-107 424-447 (676)
332 PRK10754 quinone oxidoreductas 44.5 21 0.00046 25.4 2.4 24 84-107 151-174 (327)
333 PLN02427 UDP-apiose/xylose syn 44.5 27 0.00059 25.8 3.0 25 83-107 23-48 (386)
334 TIGR03201 dearomat_had 6-hydro 44.4 21 0.00045 26.0 2.4 24 84-107 176-199 (349)
335 TIGR02818 adh_III_F_hyde S-(hy 44.1 22 0.00047 26.2 2.4 24 84-107 195-219 (368)
336 cd08259 Zn_ADH5 Alcohol dehydr 44.0 22 0.00049 25.1 2.5 24 84-107 173-196 (332)
337 PLN02858 fructose-bisphosphate 43.9 20 0.00043 31.8 2.5 26 83-108 12-37 (1378)
338 TIGR01289 LPOR light-dependent 43.8 23 0.0005 25.5 2.5 25 83-107 12-37 (314)
339 cd08270 MDR4 Medium chain dehy 43.5 27 0.0006 24.4 2.8 24 84-107 143-166 (305)
340 cd08269 Zn_ADH9 Alcohol dehydr 43.5 21 0.00045 25.1 2.2 24 84-107 139-163 (312)
341 TIGR03589 PseB UDP-N-acetylglu 43.5 26 0.00057 25.4 2.8 27 81-107 11-39 (324)
342 cd08230 glucose_DH Glucose deh 43.1 27 0.00059 25.4 2.8 23 84-106 182-204 (355)
343 TIGR01470 cysG_Nterm siroheme 43.0 31 0.00066 23.7 2.9 24 84-107 18-41 (205)
344 TIGR01724 hmd_rel H2-forming N 42.9 28 0.00061 26.2 2.8 23 86-108 31-53 (341)
345 cd08300 alcohol_DH_class_III c 42.6 24 0.00052 25.9 2.5 24 84-107 196-220 (368)
346 PRK06300 enoyl-(acyl carrier p 42.1 33 0.00071 24.9 3.1 21 85-105 21-41 (299)
347 cd08291 ETR_like_1 2-enoyl thi 42.1 24 0.00051 25.3 2.3 24 84-107 154-177 (324)
348 PRK06718 precorrin-2 dehydroge 42.0 32 0.0007 23.5 2.9 24 84-107 19-42 (202)
349 PRK05593 rplR 50S ribosomal pr 41.9 34 0.00073 21.6 2.7 24 84-107 72-95 (117)
350 cd05276 p53_inducible_oxidored 41.9 28 0.0006 24.2 2.6 24 84-107 150-173 (323)
351 KOG0409|consensus 41.8 31 0.00068 25.7 2.9 26 83-108 43-68 (327)
352 cd08231 MDR_TM0436_like Hypoth 41.6 25 0.00054 25.6 2.4 24 84-107 187-211 (361)
353 cd08242 MDR_like Medium chain 41.2 24 0.00053 25.0 2.3 24 83-106 164-187 (319)
354 COG0794 GutQ Predicted sugar p 41.1 25 0.00055 24.4 2.2 24 84-107 51-74 (202)
355 PRK13771 putative alcohol dehy 41.1 28 0.00062 24.8 2.6 24 84-107 173-196 (334)
356 cd08293 PTGR2 Prostaglandin re 41.0 33 0.00072 24.6 3.0 24 84-107 165-189 (345)
357 cd08234 threonine_DH_like L-th 40.4 24 0.00051 25.2 2.1 24 84-107 169-193 (334)
358 PLN00198 anthocyanidin reducta 40.4 35 0.00075 24.7 3.0 24 83-106 18-41 (338)
359 PLN02740 Alcohol dehydrogenase 40.2 28 0.00062 25.7 2.6 24 84-107 208-232 (381)
360 TIGR00060 L18_bact ribosomal p 39.9 38 0.00083 21.3 2.7 23 85-107 70-92 (114)
361 cd08241 QOR1 Quinone oxidoredu 39.9 30 0.00064 24.1 2.5 24 84-107 150-173 (323)
362 cd05213 NAD_bind_Glutamyl_tRNA 39.8 25 0.00055 25.6 2.2 25 84-108 187-212 (311)
363 cd08253 zeta_crystallin Zeta-c 39.8 29 0.00064 24.1 2.5 24 84-107 155-178 (325)
364 PF13380 CoA_binding_2: CoA bi 39.7 55 0.0012 20.2 3.4 25 84-108 13-37 (116)
365 PRK03806 murD UDP-N-acetylmura 39.5 36 0.00079 25.8 3.1 25 83-107 14-38 (438)
366 TIGR03451 mycoS_dep_FDH mycoth 39.4 27 0.00059 25.5 2.3 24 84-107 186-210 (358)
367 PRK12549 shikimate 5-dehydroge 39.3 29 0.00064 25.0 2.4 25 84-108 136-161 (284)
368 TIGR03026 NDP-sugDHase nucleot 39.3 39 0.00085 25.5 3.2 26 83-108 331-356 (411)
369 cd08246 crotonyl_coA_red croto 39.2 28 0.00062 25.7 2.4 24 84-107 204-227 (393)
370 PLN02586 probable cinnamyl alc 39.2 38 0.00083 24.9 3.1 23 84-106 193-215 (360)
371 cd08252 AL_MDR Arginate lyase 39.1 35 0.00075 24.3 2.8 25 83-107 159-184 (336)
372 COG1028 FabG Dehydrogenases wi 38.9 43 0.00093 22.8 3.2 24 84-107 15-38 (251)
373 cd08243 quinone_oxidoreductase 38.9 32 0.0007 24.0 2.6 23 84-106 153-175 (320)
374 PRK09880 L-idonate 5-dehydroge 38.8 31 0.00067 25.0 2.5 24 84-107 179-203 (343)
375 PF08004 DUF1699: Protein of u 38.7 11 0.00024 24.3 0.1 32 5-36 39-73 (131)
376 PRK07679 pyrroline-5-carboxyla 38.7 33 0.00072 24.4 2.6 25 83-107 11-39 (279)
377 TIGR02823 oxido_YhdH putative 38.5 33 0.00072 24.3 2.6 23 84-106 156-178 (323)
378 cd01080 NAD_bind_m-THF_DH_Cycl 38.1 43 0.00094 22.3 2.9 24 84-107 53-77 (168)
379 cd05282 ETR_like 2-enoyl thioe 37.8 37 0.00079 23.9 2.7 23 84-106 149-171 (323)
380 cd05288 PGDH Prostaglandin deh 37.7 39 0.00084 23.9 2.9 24 84-107 156-179 (329)
381 PRK12746 short chain dehydroge 37.6 42 0.00092 22.8 3.0 22 83-104 15-36 (254)
382 cd05188 MDR Medium chain reduc 37.4 43 0.00092 22.7 2.9 23 85-107 145-167 (271)
383 TIGR02356 adenyl_thiF thiazole 37.4 40 0.00087 22.9 2.8 24 84-107 30-54 (202)
384 PRK08125 bifunctional UDP-gluc 37.4 34 0.00073 27.6 2.7 25 83-107 324-349 (660)
385 KOG1014|consensus 37.2 41 0.0009 25.0 2.9 25 84-108 59-83 (312)
386 cd08251 polyketide_synthase po 37.1 44 0.00095 23.0 3.0 25 83-107 130-154 (303)
387 PTZ00032 60S ribosomal protein 37.0 41 0.00089 23.5 2.7 23 85-107 167-189 (211)
388 cd08264 Zn_ADH_like2 Alcohol d 36.9 40 0.00087 23.9 2.8 23 84-106 173-195 (325)
389 TIGR01751 crot-CoA-red crotony 36.7 33 0.00071 25.5 2.4 23 84-106 200-222 (398)
390 cd08250 Mgc45594_like Mgc45594 36.7 36 0.00078 24.2 2.6 24 84-107 150-173 (329)
391 PF02579 Nitro_FeMo-Co: Dinitr 36.4 39 0.00084 19.4 2.3 22 83-104 59-80 (94)
392 cd05286 QOR2 Quinone oxidoredu 36.4 36 0.00078 23.5 2.5 25 83-107 146-170 (320)
393 PF07287 DUF1446: Protein of u 36.2 45 0.00098 25.3 3.1 32 24-55 64-96 (362)
394 PRK13302 putative L-aspartate 35.9 32 0.00068 24.7 2.1 25 83-107 14-41 (271)
395 PLN02948 phosphoribosylaminoim 35.6 45 0.00098 26.7 3.1 25 84-108 31-55 (577)
396 PRK06077 fabG 3-ketoacyl-(acyl 35.5 54 0.0012 22.2 3.2 23 83-105 15-37 (252)
397 cd08277 liver_alcohol_DH_like 35.4 44 0.00095 24.5 2.9 24 84-107 194-218 (365)
398 cd08266 Zn_ADH_like1 Alcohol d 35.3 49 0.0011 23.2 3.1 24 84-107 177-200 (342)
399 KOG1201|consensus 35.2 49 0.0011 24.5 3.0 25 85-109 49-73 (300)
400 cd08281 liver_ADH_like1 Zinc-d 35.0 34 0.00073 25.2 2.2 24 84-107 201-225 (371)
401 TIGR01202 bchC 2-desacetyl-2-h 35.0 35 0.00075 24.5 2.3 23 84-106 154-177 (308)
402 PRK08219 short chain dehydroge 35.0 30 0.00066 23.0 1.9 24 83-107 12-35 (227)
403 cd08260 Zn_ADH6 Alcohol dehydr 35.0 40 0.00086 24.3 2.6 25 83-107 174-198 (345)
404 TIGR02817 adh_fam_1 zinc-bindi 34.8 40 0.00087 24.0 2.6 23 84-106 159-182 (336)
405 PLN02986 cinnamyl-alcohol dehy 34.4 52 0.0011 23.5 3.1 26 81-106 12-37 (322)
406 PLN02686 cinnamoyl-CoA reducta 34.1 45 0.00098 24.7 2.8 23 84-106 63-85 (367)
407 cd08268 MDR2 Medium chain dehy 34.0 40 0.00086 23.5 2.4 24 84-107 155-178 (328)
408 PLN02514 cinnamyl-alcohol dehy 33.8 42 0.0009 24.6 2.6 23 84-106 190-212 (357)
409 PLN02520 bifunctional 3-dehydr 33.8 37 0.0008 26.9 2.4 24 84-107 388-411 (529)
410 cd08255 2-desacetyl-2-hydroxye 33.7 34 0.00075 23.6 2.0 24 84-107 107-131 (277)
411 cd08267 MDR1 Medium chain dehy 33.7 51 0.0011 23.0 2.9 23 84-106 154-176 (319)
412 cd08282 PFDH_like Pseudomonas 33.5 39 0.00085 24.9 2.4 24 84-107 186-210 (375)
413 smart00829 PKS_ER Enoylreducta 33.3 43 0.00094 22.7 2.5 25 83-107 114-138 (288)
414 PF03686 UPF0146: Uncharacteri 33.2 49 0.0011 21.3 2.4 20 89-108 27-46 (127)
415 PRK15182 Vi polysaccharide bio 33.1 41 0.00088 25.9 2.4 25 83-108 14-38 (425)
416 cd08299 alcohol_DH_class_I_II_ 32.8 41 0.00088 24.9 2.4 24 84-107 200-224 (373)
417 cd08254 hydroxyacyl_CoA_DH 6-h 32.7 42 0.0009 23.8 2.4 24 84-107 175-198 (338)
418 PTZ00354 alcohol dehydrogenase 32.6 45 0.00097 23.6 2.5 23 84-106 151-173 (334)
419 TIGR02354 thiF_fam2 thiamine b 32.4 58 0.0013 22.2 2.9 24 84-107 30-54 (200)
420 PRK15057 UDP-glucose 6-dehydro 32.3 56 0.0012 24.8 3.0 27 82-108 313-339 (388)
421 PRK14573 bifunctional D-alanyl 32.2 50 0.0011 27.4 3.0 25 83-107 12-37 (809)
422 TIGR02824 quinone_pig3 putativ 32.1 46 0.001 23.1 2.5 24 84-107 150-173 (325)
423 PRK14194 bifunctional 5,10-met 32.1 69 0.0015 23.6 3.4 24 85-108 170-193 (301)
424 PRK06947 glucose-1-dehydrogena 31.8 64 0.0014 21.9 3.1 22 83-104 11-32 (248)
425 cd00757 ThiF_MoeB_HesA_family 31.5 59 0.0013 22.5 2.9 23 84-106 30-53 (228)
426 cd08233 butanediol_DH_like (2R 31.3 46 0.001 24.0 2.4 24 84-107 182-206 (351)
427 cd08248 RTN4I1 Human Reticulon 31.1 61 0.0013 23.2 3.0 23 84-106 173-195 (350)
428 cd08261 Zn_ADH7 Alcohol dehydr 31.0 46 0.00099 23.9 2.3 23 84-106 169-191 (337)
429 KOG1208|consensus 30.6 54 0.0012 24.2 2.7 23 85-107 46-68 (314)
430 PF00185 OTCace: Aspartate/orn 30.6 70 0.0015 20.9 3.0 26 82-107 11-36 (158)
431 COG0287 TyrA Prephenate dehydr 30.4 64 0.0014 23.4 3.0 25 83-107 11-37 (279)
432 cd08232 idonate-5-DH L-idonate 30.0 54 0.0012 23.5 2.6 24 84-107 175-199 (339)
433 PF10727 Rossmann-like: Rossma 29.9 46 0.001 21.2 2.0 24 84-107 19-43 (127)
434 KOG0022|consensus 29.8 54 0.0012 24.8 2.5 24 84-107 202-226 (375)
435 cd08298 CAD2 Cinnamyl alcohol 29.8 65 0.0014 22.9 3.0 24 84-107 177-200 (329)
436 PF10686 DUF2493: Protein of u 29.7 55 0.0012 18.6 2.1 31 6-36 31-62 (71)
437 PRK10309 galactitol-1-phosphat 29.7 44 0.00095 24.2 2.1 24 84-107 170-194 (347)
438 PRK01368 murD UDP-N-acetylmura 29.6 55 0.0012 25.3 2.7 23 83-106 14-36 (454)
439 PF12146 Hydrolase_4: Putative 29.6 77 0.0017 18.1 2.8 20 88-107 33-52 (79)
440 cd08272 MDR6 Medium chain dehy 29.6 72 0.0016 22.2 3.1 23 84-106 155-177 (326)
441 cd05281 TDH Threonine dehydrog 29.4 51 0.0011 23.7 2.4 23 84-106 173-196 (341)
442 PLN00203 glutamyl-tRNA reducta 29.3 43 0.00093 26.6 2.1 25 84-108 275-300 (519)
443 cd08274 MDR9 Medium chain dehy 29.3 67 0.0015 23.0 3.0 23 84-106 188-210 (350)
444 PF13450 NAD_binding_8: NAD(P) 29.1 1.1E+02 0.0023 16.9 3.2 24 85-108 6-29 (68)
445 PRK12557 H(2)-dependent methyl 29.0 59 0.0013 24.3 2.6 23 86-108 31-53 (342)
446 PRK15182 Vi polysaccharide bio 28.0 72 0.0016 24.5 3.0 25 83-107 332-356 (425)
447 PRK14175 bifunctional 5,10-met 27.8 86 0.0019 23.0 3.3 22 86-107 170-191 (286)
448 PF05675 DUF817: Protein of un 27.4 66 0.0014 22.9 2.5 22 85-106 108-129 (235)
449 cd08286 FDH_like_ADH2 formalde 27.3 59 0.0013 23.4 2.4 23 84-106 176-199 (345)
450 COG1086 Predicted nucleoside-d 27.3 66 0.0014 26.1 2.7 24 84-107 260-284 (588)
451 PRK13982 bifunctional SbtC-lik 27.3 60 0.0013 25.5 2.5 22 84-105 282-303 (475)
452 cd05311 NAD_bind_2_malic_enz N 27.2 63 0.0014 22.5 2.4 24 84-107 34-60 (226)
453 COG3395 Uncharacterized protei 26.8 74 0.0016 24.6 2.9 28 80-107 87-114 (413)
454 COG0565 LasT rRNA methylase [T 26.7 92 0.002 22.3 3.2 27 81-108 13-40 (242)
455 PLN02353 probable UDP-glucose 26.7 78 0.0017 24.8 3.0 26 83-108 342-367 (473)
456 PLN02827 Alcohol dehydrogenase 26.3 62 0.0013 24.0 2.4 23 84-106 203-226 (378)
457 cd08284 FDH_like_2 Glutathione 26.1 63 0.0014 23.1 2.3 23 84-106 177-200 (344)
458 cd08297 CAD3 Cinnamyl alcohol 26.0 85 0.0018 22.4 3.0 24 84-107 176-199 (341)
459 cd08287 FDH_like_ADH3 formalde 25.9 56 0.0012 23.4 2.1 25 83-107 177-202 (345)
460 KOG3553|consensus 25.6 52 0.0011 20.5 1.6 41 7-47 33-76 (124)
461 PRK06416 dihydrolipoamide dehy 25.1 85 0.0018 23.9 3.0 24 84-107 181-204 (462)
462 cd08265 Zn_ADH3 Alcohol dehydr 24.7 69 0.0015 23.7 2.4 23 84-106 213-236 (384)
463 PRK11064 wecC UDP-N-acetyl-D-m 24.1 91 0.002 23.8 3.0 26 83-108 338-364 (415)
464 cd05284 arabinose_DH_like D-ar 24.0 71 0.0015 22.8 2.3 24 84-107 177-201 (340)
465 cd00853 NifX NifX belongs to a 23.7 73 0.0016 18.9 2.0 23 83-105 67-89 (102)
466 PF06057 VirJ: Bacterial virul 23.7 99 0.0021 21.3 2.8 22 85-106 16-37 (192)
467 cd08279 Zn_ADH_class_III Class 23.7 72 0.0016 23.3 2.3 23 84-106 192-215 (363)
468 cd08278 benzyl_alcohol_DH Benz 23.6 76 0.0017 23.2 2.4 24 84-107 196-220 (365)
469 PRK07688 thiamine/molybdopteri 23.3 95 0.0021 23.1 2.9 24 84-107 33-57 (339)
470 PRK14189 bifunctional 5,10-met 23.1 1.1E+02 0.0024 22.3 3.1 21 86-106 170-190 (285)
471 cd05289 MDR_like_2 alcohol deh 23.1 1.1E+02 0.0023 21.1 3.0 23 84-106 155-177 (309)
472 cd08285 NADP_ADH NADP(H)-depen 23.1 79 0.0017 22.8 2.4 24 84-107 176-200 (351)
473 cd01980 Chlide_reductase_Y Chl 23.1 2.5E+02 0.0053 21.4 5.1 81 24-104 219-309 (416)
474 PRK07846 mycothione reductase; 22.9 1E+02 0.0022 23.6 3.1 24 84-107 175-198 (451)
475 cd08256 Zn_ADH2 Alcohol dehydr 22.8 70 0.0015 23.1 2.1 23 84-106 184-207 (350)
476 TIGR03452 mycothione_red mycot 22.8 94 0.002 23.8 2.8 24 84-107 178-201 (452)
477 PRK07251 pyridine nucleotide-d 22.4 1E+02 0.0022 23.3 3.0 24 84-107 166-189 (438)
478 TIGR01139 cysK cysteine syntha 22.4 1.1E+02 0.0024 21.9 3.0 24 83-106 65-88 (298)
479 cd00562 NifX_NifB This CD repr 22.3 62 0.0013 18.8 1.5 23 83-105 67-89 (102)
480 PRK09422 ethanol-active dehydr 22.2 92 0.002 22.2 2.6 24 84-107 172-196 (338)
481 cd08240 6_hydroxyhexanoate_dh_ 22.1 83 0.0018 22.7 2.4 23 84-106 185-208 (350)
482 PRK14192 bifunctional 5,10-met 22.1 1.1E+02 0.0024 22.2 3.0 22 86-107 171-192 (283)
483 PRK11730 fadB multifunctional 22.1 77 0.0017 26.1 2.3 25 84-108 322-346 (715)
484 PRK06116 glutathione reductase 22.0 1.1E+02 0.0024 23.3 3.0 24 84-107 176-199 (450)
485 PRK13512 coenzyme A disulfide 22.0 97 0.0021 23.6 2.8 24 84-107 157-180 (438)
486 cd05285 sorbitol_DH Sorbitol d 22.0 75 0.0016 22.9 2.1 23 84-106 172-195 (343)
487 PRK12475 thiamine/molybdopteri 22.0 1.1E+02 0.0023 22.9 2.9 24 84-107 33-57 (338)
488 KOG1203|consensus 22.0 93 0.002 24.1 2.6 24 84-107 89-112 (411)
489 cd00852 NifB NifB belongs to a 21.9 82 0.0018 18.8 2.0 24 83-106 71-94 (106)
490 cd05195 enoyl_red enoyl reduct 21.9 1.2E+02 0.0025 20.5 3.0 24 83-106 118-141 (293)
491 TIGR01421 gluta_reduc_1 glutat 21.8 1E+02 0.0022 23.6 2.8 24 84-107 175-198 (450)
492 TIGR01809 Shik-DH-AROM shikima 21.8 86 0.0019 22.5 2.3 25 84-108 134-159 (282)
493 PRK05225 ketol-acid reductoiso 21.8 45 0.00097 26.3 0.9 19 84-107 45-63 (487)
494 cd08290 ETR 2-enoyl thioester 21.6 1E+02 0.0023 21.9 2.8 23 84-106 157-179 (341)
495 cd08273 MDR8 Medium chain dehy 21.5 1.1E+02 0.0025 21.5 2.9 24 83-106 149-172 (331)
496 PTZ00434 cytosolic glyceraldeh 21.4 1.1E+02 0.0023 23.3 2.8 24 82-105 10-38 (361)
497 cd08263 Zn_ADH10 Alcohol dehyd 21.4 79 0.0017 23.1 2.1 23 84-106 197-220 (367)
498 COG1992 Uncharacterized conser 21.3 1.2E+02 0.0026 20.8 2.8 51 43-108 69-119 (181)
499 TIGR01138 cysM cysteine syntha 21.3 1.2E+02 0.0026 21.9 3.0 24 83-106 67-90 (290)
500 TIGR02440 FadJ fatty oxidation 21.3 83 0.0018 25.9 2.4 25 84-108 313-338 (699)
No 1
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=200.36 Aligned_cols=106 Identities=27% Similarity=0.312 Sum_probs=96.5
Q ss_pred cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc----c
Q psy15800 2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ----H 77 (109)
Q Consensus 2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~----~ 77 (109)
|+ .+|+||+|++.|+||||||+++++++||.|+|+|++++++||||+++++|++.|++.+.++.+++|+|..+. .
T Consensus 61 l~-~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~ 139 (324)
T COG1052 61 LE-KLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPL 139 (324)
T ss_pred HH-hCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccc
Confidence 44 569999999999999999999999999999999999999999999999999999999999999999997653 2
Q ss_pred hhhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 78 AITELI---------TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 78 ~~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.+.++. |+||+++|+++++|||+|+||||++
T Consensus 140 ~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~ 179 (324)
T COG1052 140 LGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSP 179 (324)
T ss_pred cccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCC
Confidence 233332 7999999999999999999999986
No 2
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.97 E-value=6.3e-31 Score=190.65 Aligned_cols=104 Identities=19% Similarity=0.261 Sum_probs=94.0
Q ss_pred CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc------h
Q psy15800 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH------A 78 (109)
Q Consensus 5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~------~ 78 (109)
.+|+||||++.|+|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|+|..... .
T Consensus 60 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~ 139 (311)
T PRK08410 60 QLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRP 139 (311)
T ss_pred hCCCCeEEEEcccccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999964311 1
Q ss_pred hhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 79 ITELI---------TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 79 ~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
+.++. |+||+++|+++++|||+|++|||+.
T Consensus 140 ~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~ 178 (311)
T PRK08410 140 LGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG 178 (311)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCc
Confidence 12333 7899999999999999999999864
No 3
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.97 E-value=7.1e-31 Score=191.10 Aligned_cols=104 Identities=26% Similarity=0.282 Sum_probs=95.8
Q ss_pred CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhc-
Q psy15800 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELI- 83 (109)
Q Consensus 5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~- 83 (109)
.+|+||||++.++|+|+||++++.++||.|+|+|+.++.+||||+++++|+++|+++.+++.+++|.|.+....+.++.
T Consensus 63 ~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~g 142 (324)
T COG0111 63 AAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAG 142 (324)
T ss_pred hCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999986333334443
Q ss_pred --------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 --------TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 --------G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|+||+++|+++++|||+|++|||+.
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~ 175 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYS 175 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCC
Confidence 7899999999999999999999964
No 4
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.97 E-value=4e-30 Score=186.90 Aligned_cols=103 Identities=21% Similarity=0.284 Sum_probs=93.4
Q ss_pred CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc------h
Q psy15800 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH------A 78 (109)
Q Consensus 5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~------~ 78 (109)
.+|+||||++.++|+|++|++++.++||.|+|+||+++++||||++++||++.|+++.+++.+++|.|..... .
T Consensus 63 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~ 142 (317)
T PRK06487 63 AAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFP 142 (317)
T ss_pred hCCCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999964421 1
Q ss_pred hhhhc---------cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 79 ITELI---------TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 79 ~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
+.++. |+||+++|+++++|||+|++|||+
T Consensus 143 ~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~ 180 (317)
T PRK06487 143 IVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLP 180 (317)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence 12332 789999999999999999999986
No 5
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.97 E-value=4.1e-30 Score=187.23 Aligned_cols=106 Identities=21% Similarity=0.246 Sum_probs=94.9
Q ss_pred cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc---ch
Q psy15800 2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ---HA 78 (109)
Q Consensus 2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~---~~ 78 (109)
|+ .+|+||+|++.++|+|+||++++.++||.|+|+||+++++||||++++||++.|+++.+++.+++|+|.... ..
T Consensus 61 l~-~~p~Lk~I~~~g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~ 139 (323)
T PRK15409 61 LE-KMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWF 139 (323)
T ss_pred Hh-hCCCCeEEEECceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccc
Confidence 44 689999999999999999999999999999999999999999999999999999999999999999996431 12
Q ss_pred hhhhc---------cchHHHHHHHHh-hcCCEEEEEcccc
Q psy15800 79 ITELI---------TQSDTNHTQRCL-ASIMQLVYSTCYN 108 (109)
Q Consensus 79 ~~~l~---------G~IG~~va~~~~-~fg~~V~~~~r~~ 108 (109)
+.++. |+||+++|++++ +|||+|+||||+.
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~ 179 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH 179 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 33443 789999999998 9999999999874
No 6
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.96 E-value=4.7e-30 Score=191.78 Aligned_cols=104 Identities=22% Similarity=0.232 Sum_probs=94.8
Q ss_pred CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhc-
Q psy15800 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELI- 83 (109)
Q Consensus 5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~- 83 (109)
.+|+||||++.|+|+|+||++++.++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|+|......+.+|.
T Consensus 72 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~g 151 (409)
T PRK11790 72 AAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRG 151 (409)
T ss_pred hCCCCeEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999975432233443
Q ss_pred --------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 --------TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 --------G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|+||+++|+++++|||+|++|||+.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~ 184 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED 184 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence 7899999999999999999999864
No 7
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.96 E-value=1.7e-29 Score=184.69 Aligned_cols=104 Identities=22% Similarity=0.365 Sum_probs=94.1
Q ss_pred CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc----c---
Q psy15800 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ----H--- 77 (109)
Q Consensus 5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~----~--- 77 (109)
.+|+||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|.|.... +
T Consensus 64 ~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~ 143 (333)
T PRK13243 64 AAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMF 143 (333)
T ss_pred hCCCCeEEEecCccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999996421 1
Q ss_pred hhhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 78 AITELI---------TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 78 ~~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.+.++. |+||+.+|+++++|||+|++|||+.
T Consensus 144 ~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 183 (333)
T PRK13243 144 LGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR 183 (333)
T ss_pred cccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 223443 7899999999999999999999874
No 8
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.96 E-value=1.8e-29 Score=183.32 Aligned_cols=104 Identities=22% Similarity=0.196 Sum_probs=93.4
Q ss_pred CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc------h
Q psy15800 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH------A 78 (109)
Q Consensus 5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~------~ 78 (109)
.+|+||||++.++|+|+||.+++.++||.|+|+||+++++||||+++++|++.|+++.+++.++++.|..... .
T Consensus 62 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~ 141 (314)
T PRK06932 62 QLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYP 141 (314)
T ss_pred hCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCccccccCCc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999964311 1
Q ss_pred hhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 79 ITELI---------TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 79 ~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
+.++. |+||+++|+++++|||+|++|||+.
T Consensus 142 ~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~ 180 (314)
T PRK06932 142 ITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKG 180 (314)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCc
Confidence 12332 7899999999999999999999853
No 9
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.96 E-value=9e-29 Score=189.68 Aligned_cols=105 Identities=24% Similarity=0.285 Sum_probs=95.3
Q ss_pred cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhh
Q psy15800 2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITE 81 (109)
Q Consensus 2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~ 81 (109)
|+ .+|+||||+..++|+|+||++++.++||.|+|+||+++.+||||++++||++.|+++.+++.+++|+|.+....+.+
T Consensus 57 l~-~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~ 135 (525)
T TIGR01327 57 IA-AAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTE 135 (525)
T ss_pred Hh-hCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccc
Confidence 44 58999999999999999999999999999999999999999999999999999999999999999999754323334
Q ss_pred hc---------cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 82 LI---------TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 82 l~---------G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
+. |+||+++|+++++|||+|++|||+
T Consensus 136 l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~ 170 (525)
T TIGR01327 136 LYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPY 170 (525)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCC
Confidence 43 789999999999999999999986
No 10
>PLN03139 formate dehydrogenase; Provisional
Probab=99.96 E-value=1.5e-28 Score=182.22 Aligned_cols=104 Identities=22% Similarity=0.241 Sum_probs=93.8
Q ss_pred CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc--chhhhh
Q psy15800 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ--HAITEL 82 (109)
Q Consensus 5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~--~~~~~l 82 (109)
.+|+||||++.++|+|+||++++.++||.|+|++|+++++||||++++||++.|++..+++.+++|.|.... ..+.++
T Consensus 118 ~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L 197 (386)
T PLN03139 118 KAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDL 197 (386)
T ss_pred hCCCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999996421 122333
Q ss_pred c---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 I---------TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~---------G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
. |+||+.+|+++++|||+|++|||+.
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~ 232 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLK 232 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCC
Confidence 2 7899999999999999999999874
No 11
>PRK07574 formate dehydrogenase; Provisional
Probab=99.95 E-value=1.7e-28 Score=182.05 Aligned_cols=104 Identities=23% Similarity=0.267 Sum_probs=94.2
Q ss_pred CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc--chhhhh
Q psy15800 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ--HAITEL 82 (109)
Q Consensus 5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~--~~~~~l 82 (109)
.+|+||||++.++|+|+||++++.++||.|+|+++.++++||||+++++|++.|++..+++.+++|+|.... ..+.++
T Consensus 111 ~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L 190 (385)
T PRK07574 111 KAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDL 190 (385)
T ss_pred hCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceec
Confidence 689999999999999999999999999999999999999999999999999999999999999999996432 112233
Q ss_pred c---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 I---------TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~---------G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
. |+||+.+|++|++|||+|++|||+.
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~ 225 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHR 225 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence 2 7899999999999999999999974
No 12
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.95 E-value=2.2e-28 Score=187.58 Aligned_cols=106 Identities=26% Similarity=0.316 Sum_probs=95.5
Q ss_pred cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhh
Q psy15800 2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITE 81 (109)
Q Consensus 2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~ 81 (109)
|+ .+|+||||++.|+|+|++|++++.++||.|+|+|++++.+||||+++++|++.|+++.+++.+++|.|.+....+.+
T Consensus 59 l~-~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~ 137 (526)
T PRK13581 59 LE-AAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVE 137 (526)
T ss_pred Hh-hCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccc
Confidence 44 68999999999999999999999999999999999999999999999999999999999999999999753322333
Q ss_pred hc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 82 LI---------TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 82 l~---------G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
+. |+||+.+|+++++|||+|++|||+.
T Consensus 138 l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~ 173 (526)
T PRK13581 138 LYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI 173 (526)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence 32 7899999999999999999999863
No 13
>PLN02306 hydroxypyruvate reductase
Probab=99.95 E-value=5.4e-28 Score=179.48 Aligned_cols=104 Identities=21% Similarity=0.292 Sum_probs=92.3
Q ss_pred CCCC--ceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc---hh
Q psy15800 5 AGEN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH---AI 79 (109)
Q Consensus 5 ~~p~--Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~---~~ 79 (109)
.+|+ ||+|++.++|+|+||++++.++||+|+|+||+++++||||+++++|++.|+++.+++.+++|+|..+.+ .+
T Consensus 81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g 160 (386)
T PLN02306 81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG 160 (386)
T ss_pred hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence 4674 699999999999999999999999999999999999999999999999999999999999999864421 23
Q ss_pred hhhc---------cchHHHHHHHHh-hcCCEEEEEcccc
Q psy15800 80 TELI---------TQSDTNHTQRCL-ASIMQLVYSTCYN 108 (109)
Q Consensus 80 ~~l~---------G~IG~~va~~~~-~fg~~V~~~~r~~ 108 (109)
.++. |+||+++|++++ +|||+|++|||+.
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~ 199 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 3343 789999999985 9999999999874
No 14
>PLN02928 oxidoreductase family protein
Probab=99.94 E-value=5.5e-27 Score=172.24 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=91.3
Q ss_pred CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCC---CccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhh
Q psy15800 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPV---SSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITE 81 (109)
Q Consensus 5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~---~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~ 81 (109)
.+|+||||++.++|+|++|++++.++||.|+|+|++ ++.+||||+++++|++.|++..+.+.++++.|... .+.+
T Consensus 79 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~--~~~~ 156 (347)
T PLN02928 79 RASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEP--IGDT 156 (347)
T ss_pred cCCCceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccc--cccC
Confidence 589999999999999999999999999999999985 78999999999999999999999999999999542 2222
Q ss_pred h---------ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 82 L---------ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 82 l---------~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
+ .|+||+++|+++++|||+|++|||+
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~ 191 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRS 191 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence 3 2799999999999999999999986
No 15
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.94 E-value=5.3e-27 Score=171.32 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=91.5
Q ss_pred CCC--CceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc-chhhh
Q psy15800 5 AGE--NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ-HAITE 81 (109)
Q Consensus 5 ~~p--~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~-~~~~~ 81 (109)
.+| +||+|++.++|+|+||++++.++||.|+|+|++++++||||+++++|++.|+++.+++.+++|.|.... ..+.+
T Consensus 64 ~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~ 143 (330)
T PRK12480 64 KLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKP 143 (330)
T ss_pred hhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccc
Confidence 455 899999999999999999999999999999999999999999999999999999999999998763211 12233
Q ss_pred hc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 82 LI---------TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 82 l~---------G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
+. |.||+.+|+++++|||+|++|||+.
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~ 179 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYP 179 (330)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCh
Confidence 32 7899999999999999999999874
No 16
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.94 E-value=2.5e-26 Score=166.14 Aligned_cols=101 Identities=20% Similarity=0.178 Sum_probs=89.1
Q ss_pred CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhc-
Q psy15800 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELI- 83 (109)
Q Consensus 5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~- 83 (109)
.+|+||||++.++|+|++|.+++.++++.++|. |.++++||||+++++|++.|+++.+.+.+++|+|.... ..++.
T Consensus 46 ~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~--~~~L~g 122 (303)
T PRK06436 46 PGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQSP--TKLLYN 122 (303)
T ss_pred CCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCC--CCCCCC
Confidence 468999999999999999999999888777775 77899999999999999999999999999999997432 22332
Q ss_pred --------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 --------TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 --------G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|+||+++|+++++|||+|++|||+.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~ 155 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSY 155 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 7899999999999999999999864
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.93 E-value=2.5e-26 Score=167.92 Aligned_cols=104 Identities=16% Similarity=0.152 Sum_probs=91.7
Q ss_pred CCCC--ceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc-chhhh
Q psy15800 5 AGEN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ-HAITE 81 (109)
Q Consensus 5 ~~p~--Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~-~~~~~ 81 (109)
.+|+ ||+|++.|+|+|++|++++.++||.|+|+||+++++||||+++++|++.|++..+++.+++|.|.... ..+.+
T Consensus 64 ~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 143 (332)
T PRK08605 64 LLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRS 143 (332)
T ss_pred hhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccce
Confidence 5676 99999999999999999999999999999999999999999999999999999999999999873211 12333
Q ss_pred hc---------cchHHHHHHHH-hhcCCEEEEEcccc
Q psy15800 82 LI---------TQSDTNHTQRC-LASIMQLVYSTCYN 108 (109)
Q Consensus 82 l~---------G~IG~~va~~~-~~fg~~V~~~~r~~ 108 (109)
+. |.||+.+|+++ ++|||+|++|||+.
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~ 180 (332)
T PRK08605 144 IKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFP 180 (332)
T ss_pred eCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 43 78999999999 79999999999864
No 18
>KOG0069|consensus
Probab=99.93 E-value=3.2e-26 Score=166.34 Aligned_cols=105 Identities=30% Similarity=0.420 Sum_probs=93.4
Q ss_pred ccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc---h-
Q psy15800 3 SRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH---A- 78 (109)
Q Consensus 3 ~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~---~- 78 (109)
.+.+|+||+|.+.|+|+||||+++|+++||+|+|+|+...++|||++++++|.+.|++...++.+++|+| .+.. .
T Consensus 79 ~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g 157 (336)
T KOG0069|consen 79 SALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLG 157 (336)
T ss_pred hhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCcccc
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999 3321 1
Q ss_pred ----hhhh----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 79 ----ITEL----ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 79 ----~~~l----~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
+.++ .|+||+.+|++|++|||.+.|++|+.
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~ 195 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQ 195 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccC
Confidence 1121 28999999999999999999999864
No 19
>KOG0068|consensus
Probab=99.93 E-value=1.5e-26 Score=167.03 Aligned_cols=106 Identities=23% Similarity=0.259 Sum_probs=97.5
Q ss_pred ccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhh
Q psy15800 3 SRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITEL 82 (109)
Q Consensus 3 ~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l 82 (109)
+++..+||+|.+.++|+|++|++++.++||.|.|+|.+++.++||+++++++++.|++++....+++|+|.+....+.++
T Consensus 65 ~aa~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el 144 (406)
T KOG0068|consen 65 EAAAGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWEL 144 (406)
T ss_pred HhhcCCeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEE
Confidence 33567899999999999999999999999999999999999999999999999999999999999999998766555554
Q ss_pred c---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 I---------TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~---------G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
. |+||+++|+++++|||+|++|||..
T Consensus 145 ~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~ 179 (406)
T KOG0068|consen 145 RGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPIT 179 (406)
T ss_pred eccEEEEeecccchHHHHHHHHhcCceEEeecCCC
Confidence 3 7899999999999999999999974
No 20
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.90 E-value=8.6e-24 Score=153.47 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=86.5
Q ss_pred CCCceEEEecCccCCcccHHH-----HhhcCcEEEecCC-CCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc--
Q psy15800 6 GENLKVISTFSVGHDHLHLDQ-----IKSRGIRVGTVGP-VSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH-- 77 (109)
Q Consensus 6 ~p~Lk~i~~~~~G~d~id~~~-----~~~~gi~v~n~~g-~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~-- 77 (109)
.|+||||++.++|+|++|.+. +.++||+|+|.++ .++.+||||+++++|++.|+++.+.+.++++.|.....
T Consensus 54 ~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~ 133 (312)
T PRK15469 54 GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYH 133 (312)
T ss_pred cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCC
Confidence 489999999999999998332 3458999999864 68999999999999999999999999999999964321
Q ss_pred -hhhhh----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 78 -AITEL----ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 78 -~~~~l----~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.+..+ .|+||+++|+++++|||+|++|||+.
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~ 169 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSR 169 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 11222 28999999999999999999999865
No 21
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.90 E-value=2.7e-23 Score=153.93 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=79.1
Q ss_pred CCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcc-cchhhhhcc
Q psy15800 6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQ-QHAITELIT 84 (109)
Q Consensus 6 ~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~-~~~~~~l~G 84 (109)
.|+||||++.++|+||||.+++.++||.|+|+||+++.+||||+++++|++.|+.. |.-. ...+.--.|
T Consensus 56 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~g----------~~L~gktvGIIG~G 125 (378)
T PRK15438 56 GKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERDG----------FSLHDRTVGIVGVG 125 (378)
T ss_pred CCCCeEEEECcccccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccCC----------CCcCCCEEEEECcC
Confidence 58999999999999999999999999999999999999999999999999999731 2111 111111248
Q ss_pred chHHHHHHHHhhcCCEEEEEcccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
+||+++|+++++|||+|++|||..
T Consensus 126 ~IG~~vA~~l~a~G~~V~~~dp~~ 149 (378)
T PRK15438 126 NVGRRLQARLEALGIKTLLCDPPR 149 (378)
T ss_pred HHHHHHHHHHHHCCCEEEEECCcc
Confidence 999999999999999999999864
No 22
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.88 E-value=1.6e-22 Score=149.96 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=78.4
Q ss_pred CCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhccc
Q psy15800 6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQ 85 (109)
Q Consensus 6 ~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~G~ 85 (109)
.|+||||++.++|+||||.+++.++||.|+|+||+++.+||||+++++|++.|+.. .+.. ....+.--.|+
T Consensus 56 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~g--------~~l~-gktvGIIG~G~ 126 (381)
T PRK00257 56 GSRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAEREG--------VDLA-ERTYGVVGAGH 126 (381)
T ss_pred CCCCeEEEECCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcccC--------CCcC-cCEEEEECCCH
Confidence 48999999999999999999999999999999999999999999999999998621 0110 11111112489
Q ss_pred hHHHHHHHHhhcCCEEEEEcccc
Q psy15800 86 SDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 86 IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
||+.+|+++++|||+|++|||..
T Consensus 127 IG~~va~~l~a~G~~V~~~Dp~~ 149 (381)
T PRK00257 127 VGGRLVRVLRGLGWKVLVCDPPR 149 (381)
T ss_pred HHHHHHHHHHHCCCEEEEECCcc
Confidence 99999999999999999999864
No 23
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.56 E-value=1.6e-15 Score=97.74 Aligned_cols=45 Identities=44% Similarity=0.573 Sum_probs=40.9
Q ss_pred CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHH
Q psy15800 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFN 49 (109)
Q Consensus 5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~ 49 (109)
.+|+||||+..|+|+|+||++++.++||.|+|+||+++.+||||+
T Consensus 57 ~~~~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 57 AAPNLKLISTAGAGVDNIDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHTT-SEEEESSSSCTTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred ccceeEEEEEcccccCcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 469999999999999999999999999999999999999999999
No 24
>KOG0067|consensus
Probab=99.45 E-value=5e-14 Score=103.35 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=92.5
Q ss_pred CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhh----
Q psy15800 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAIT---- 80 (109)
Q Consensus 5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~---- 80 (109)
.++.||++...+.|+|++|+.++.+.+|.|||.|+..-+.+|+-++-++|.++|+-....+..++|.|........
T Consensus 92 kfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~ 171 (435)
T KOG0067|consen 92 KFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVREAAC 171 (435)
T ss_pred HhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccceeechhhhhhhhh
Confidence 5678999999999999999999999999999999999999999999999999999999999999999964321111
Q ss_pred --------hh----ccchHHHHHHHHhhcCCEEEEEccccC
Q psy15800 81 --------EL----ITQSDTNHTQRCLASIMQLVYSTCYNQ 109 (109)
Q Consensus 81 --------~l----~G~IG~~va~~~~~fg~~V~~~~r~~~ 109 (109)
.+ .|++|+.++.++++||..|+.|||+.+
T Consensus 172 g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~ 212 (435)
T KOG0067|consen 172 GLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLI 212 (435)
T ss_pred ccccccccceeeeccccccceehhhhhcccceeeeecchhh
Confidence 11 268999999999999999999999853
No 25
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.38 E-value=3.4e-13 Score=90.92 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=47.3
Q ss_pred HHHHHHHhcCchHhHHHHHcCCC-Ccccchhhhh---------ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 50 IGLAIAVSRRFQQGHNCIASGTE-KSQQHAITEL---------ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 50 l~~~L~l~R~~~~~~~~~~~g~w-~~~~~~~~~l---------~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
++++|++.|+++.+++.++++.| ......+.++ .|+||+++|+++++|||+|++|||+.
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~ 69 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSP 69 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccC
Confidence 58999999999999999999999 1111222233 27999999999999999999999985
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.12 E-value=6.9e-11 Score=85.23 Aligned_cols=88 Identities=17% Similarity=0.053 Sum_probs=68.7
Q ss_pred ceEEEecCccCCcccHH-HHhhcCcEEE------ecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhh
Q psy15800 9 LKVISTFSVGHDHLHLD-QIKSRGIRVG------TVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITE 81 (109)
Q Consensus 9 Lk~i~~~~~G~d~id~~-~~~~~gi~v~------n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~ 81 (109)
++.++...+|+++.|++ .+.++||+|+ |++.+++.++||+++++++... .-++.... ..--
T Consensus 90 ~~~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~-----------~~~l~gk~-v~Ii 157 (287)
T TIGR02853 90 TKGHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT-----------DFTIHGSN-VMVL 157 (287)
T ss_pred cCCCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc-----------CCCCCCCE-EEEE
Confidence 44688899999999998 9999999999 8999999999999999888531 01221111 1111
Q ss_pred hccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 82 LITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 82 l~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
-.|.||+.+|+.|++||++|++++|..
T Consensus 158 G~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 158 GFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred cChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 138999999999999999999999864
No 27
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.75 E-value=1.5e-08 Score=77.41 Aligned_cols=85 Identities=8% Similarity=-0.078 Sum_probs=62.9
Q ss_pred ecCccCCccc-HHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhh----ccchHH
Q psy15800 14 TFSVGHDHLH-LDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITEL----ITQSDT 88 (109)
Q Consensus 14 ~~~~G~d~id-~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l----~G~IG~ 88 (109)
-.++|+..+- +....+.+|+|+|+|+.+..+++|+++++++++. +..++.+... ..+..+ .|.||+
T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~~~~---LaGKtVgVIG~G~IGr 267 (476)
T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRATDVM---IAGKTVVVCGYGDVGK 267 (476)
T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhcCCC---cCCCEEEEECCCHHHH
Confidence 4567777652 3333456899999999999999999999999988 3344444321 111212 389999
Q ss_pred HHHHHHhhcCCEEEEEccc
Q psy15800 89 NHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 89 ~va~~~~~fg~~V~~~~r~ 107 (109)
.+|+++++|||+|+++++.
T Consensus 268 ~vA~rL~a~Ga~ViV~e~d 286 (476)
T PTZ00075 268 GCAQALRGFGARVVVTEID 286 (476)
T ss_pred HHHHHHHHCCCEEEEEeCC
Confidence 9999999999999999654
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.13 E-value=5.7e-06 Score=60.02 Aligned_cols=90 Identities=12% Similarity=-0.052 Sum_probs=63.2
Q ss_pred CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCC------CccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccch
Q psy15800 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPV------SSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHA 78 (109)
Q Consensus 5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~------~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~ 78 (109)
..|++..+. .|.+.++++ +.+.++||.+.+.... ++.+++|.++...+... ..++....-.
T Consensus 90 ~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~-----------~~~l~g~kvl 156 (296)
T PRK08306 90 LTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEHT-----------PITIHGSNVL 156 (296)
T ss_pred hcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHhC-----------CCCCCCCEEE
Confidence 466776444 488889988 7888999999987754 88899999777644211 1122111100
Q ss_pred hhhhccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 79 ITELITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 79 ~~~l~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
---.|.+|+.+++.|+.+|++|.++||+.
T Consensus 157 -ViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 157 -VLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred -EECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 01138999999999999999999999874
No 29
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.98 E-value=0.0033 Score=47.96 Aligned_cols=90 Identities=7% Similarity=-0.004 Sum_probs=51.6
Q ss_pred EecCccCCcc-cHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhccchHHHHH
Q psy15800 13 STFSVGHDHL-HLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQSDTNHT 91 (109)
Q Consensus 13 ~~~~~G~d~i-d~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~G~IG~~va 91 (109)
=-.++|+..+ .+..-.+.+++|.|++.......-|...+.-.+....+.... +-..... ...---.|.||+.+|
T Consensus 154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~rat----~~~l~Gk-~VlViG~G~IG~~vA 228 (425)
T PRK05476 154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIKRAT----NVLIAGK-VVVVAGYGDVGKGCA 228 (425)
T ss_pred ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHHHhc----cCCCCCC-EEEEECCCHHHHHHH
Confidence 3456777765 333334578999999988777654433322222221111110 0011111 000111389999999
Q ss_pred HHHhhcCCEEEEEccc
Q psy15800 92 QRCLASIMQLVYSTCY 107 (109)
Q Consensus 92 ~~~~~fg~~V~~~~r~ 107 (109)
++++++|++|+++|+.
T Consensus 229 ~~lr~~Ga~ViV~d~d 244 (425)
T PRK05476 229 QRLRGLGARVIVTEVD 244 (425)
T ss_pred HHHHhCCCEEEEEcCC
Confidence 9999999999999865
No 30
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.82 E-value=0.0085 Score=44.36 Aligned_cols=25 Identities=12% Similarity=-0.010 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|+||+++|++|++|||+|+++++.
T Consensus 24 ~GsIG~amA~nL~d~G~~ViV~~r~ 48 (335)
T PRK13403 24 YGSQGHAQAQNLRDSGVEVVVGVRP 48 (335)
T ss_pred EcHHHHHHHHHHHHCcCEEEEEECc
Confidence 3899999999999999999999764
No 31
>PLN02494 adenosylhomocysteinase
Probab=95.35 E-value=0.016 Score=44.81 Aligned_cols=25 Identities=4% Similarity=-0.063 Sum_probs=22.5
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|.||+.+|+++++|||+|+++++.+
T Consensus 263 G~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 263 GDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6899999999999999999997643
No 32
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.49 E-value=0.037 Score=37.03 Aligned_cols=25 Identities=0% Similarity=-0.160 Sum_probs=20.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
+|.+|+.+|+.|+++|++|+.++..
T Consensus 31 YG~vG~g~A~~lr~~Ga~V~V~e~D 55 (162)
T PF00670_consen 31 YGKVGKGIARALRGLGARVTVTEID 55 (162)
T ss_dssp -SHHHHHHHHHHHHTT-EEEEE-SS
T ss_pred CCcccHHHHHHHhhCCCEEEEEECC
Confidence 3899999999999999999998754
No 33
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.52 E-value=0.071 Score=40.59 Aligned_cols=24 Identities=4% Similarity=-0.065 Sum_probs=21.8
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+.+|+++++||++|+++|+.
T Consensus 204 G~IG~~vA~~ak~~Ga~ViV~d~d 227 (406)
T TIGR00936 204 GWCGKGIAMRARGMGARVIVTEVD 227 (406)
T ss_pred CHHHHHHHHHHhhCcCEEEEEeCC
Confidence 689999999999999999999643
No 34
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.01 E-value=0.083 Score=36.25 Aligned_cols=26 Identities=8% Similarity=0.088 Sum_probs=23.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|++|+.+|+.|..+|++|+++|+..
T Consensus 36 ~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 36 LGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 38999999999999999999999753
No 35
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.10 E-value=0.22 Score=38.04 Aligned_cols=24 Identities=4% Similarity=-0.040 Sum_probs=22.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+.++++++++|++|+++|+.
T Consensus 211 G~IG~~va~~ak~~Ga~ViV~d~d 234 (413)
T cd00401 211 GDVGKGCAQSLRGQGARVIVTEVD 234 (413)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECC
Confidence 679999999999999999999765
No 36
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=89.55 E-value=0.37 Score=35.85 Aligned_cols=25 Identities=4% Similarity=-0.015 Sum_probs=23.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|..|++++--++.+|.+|+++|||.
T Consensus 21 GELGKEvaIe~QRLG~eViAVDrY~ 45 (394)
T COG0027 21 GELGKEVAIEAQRLGVEVIAVDRYA 45 (394)
T ss_pred CccchHHHHHHHhcCCEEEEecCcC
Confidence 7899999999999999999999985
No 37
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=87.19 E-value=0.6 Score=35.02 Aligned_cols=24 Identities=8% Similarity=-0.141 Sum_probs=22.7
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.+++.++.+|++|.++|+.
T Consensus 176 G~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 176 GVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CHHHHHHHHHHHHCCCeEEEEECC
Confidence 789999999999999999999975
No 38
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=85.61 E-value=0.93 Score=32.18 Aligned_cols=25 Identities=0% Similarity=-0.060 Sum_probs=23.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|.+++.++++++.+|++|+.+|+..
T Consensus 109 G~va~~la~la~~lGf~V~v~D~R~ 133 (246)
T TIGR02964 109 GHVGRALVRALAPLPCRVTWVDSRE 133 (246)
T ss_pred cHHHHHHHHHHhcCCCEEEEEeCCc
Confidence 7899999999999999999999764
No 39
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=84.01 E-value=1.1 Score=33.28 Aligned_cols=25 Identities=12% Similarity=-0.025 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|++|+++|+.|+.+|++|+++++.
T Consensus 25 ~GsmG~AlA~~L~~sG~~Vvv~~r~ 49 (330)
T PRK05479 25 YGSQGHAHALNLRDSGVDVVVGLRE 49 (330)
T ss_pred eHHHHHHHHHHHHHCCCEEEEEECC
Confidence 3899999999999999999987664
No 40
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=82.94 E-value=1.8 Score=26.44 Aligned_cols=29 Identities=3% Similarity=-0.049 Sum_probs=21.2
Q ss_pred hhhccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 80 TELITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 80 ~~l~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
..+..+-+..+++.|+..|++|.+|||+.
T Consensus 12 ~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v 40 (106)
T PF03720_consen 12 DDIRESPALELIEELKERGAEVSVYDPYV 40 (106)
T ss_dssp S--TT-HHHHHHHHHHHTT-EEEEE-TTS
T ss_pred cccccCHHHHHHHHHHHCCCEEEEECCcc
Confidence 34556778899999999999999999975
No 41
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=82.82 E-value=1.1 Score=32.22 Aligned_cols=26 Identities=15% Similarity=-0.032 Sum_probs=23.7
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.+|..+|..+...|.+|+.||+..
T Consensus 12 ~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 12 AGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48999999999999999999999864
No 42
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.69 E-value=1.5 Score=31.78 Aligned_cols=26 Identities=4% Similarity=-0.210 Sum_probs=23.8
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.+|+.+|+.+...|.+|..|+|..
T Consensus 12 ~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 12 AGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 48999999999999999999999864
No 43
>PLN02712 arogenate dehydrogenase
Probab=81.76 E-value=1.4 Score=35.66 Aligned_cols=24 Identities=0% Similarity=-0.197 Sum_probs=22.6
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+.+|+.++.+|.+|++|||.
T Consensus 378 G~mG~slA~~L~~~G~~V~~~dr~ 401 (667)
T PLN02712 378 GNFGQFLAKTMVKQGHTVLAYSRS 401 (667)
T ss_pred CHHHHHHHHHHHHCcCEEEEEECC
Confidence 789999999999999999999985
No 44
>PLN02256 arogenate dehydrogenase
Probab=80.87 E-value=1.9 Score=31.59 Aligned_cols=25 Identities=0% Similarity=-0.129 Sum_probs=23.0
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.+|+.+++.++..|.+|++||+.
T Consensus 44 ~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 44 FGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred eCHHHHHHHHHHHhCCCEEEEEECc
Confidence 4899999999999999999999976
No 45
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=80.21 E-value=2.1 Score=29.94 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=21.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|.||+++|+.+...|++|+..++
T Consensus 24 SGgIG~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 24 TGHLGKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEcC
Confidence 388999999999999999998764
No 46
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=79.52 E-value=2.2 Score=29.85 Aligned_cols=23 Identities=4% Similarity=-0.026 Sum_probs=20.7
Q ss_pred ccchHHHHHHHHhhcCCEEEEEc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~ 105 (109)
.|++|+.+++.|..+|++|+++.
T Consensus 39 ~G~VG~~~a~~L~~~g~~vv~v~ 61 (227)
T cd01076 39 FGNVGSHAARFLHEAGAKVVAVS 61 (227)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEE
Confidence 48999999999999999999653
No 47
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.41 E-value=1.7 Score=32.08 Aligned_cols=26 Identities=15% Similarity=-0.012 Sum_probs=23.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.+|..+|..+...|++|..||+.+
T Consensus 15 aG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 15 SGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred cCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 37899999999999999999999864
No 48
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=78.52 E-value=2.3 Score=29.56 Aligned_cols=25 Identities=8% Similarity=-0.071 Sum_probs=22.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+...|++|+..+|.
T Consensus 14 s~gIG~~ia~~l~~~G~~V~~~~r~ 38 (262)
T TIGR03325 14 ASGLGRAIVDRFVAEGARVAVLDKS 38 (262)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4679999999999999999998875
No 49
>PRK08703 short chain dehydrogenase; Provisional
Probab=78.28 E-value=2.5 Score=28.82 Aligned_cols=26 Identities=4% Similarity=-0.091 Sum_probs=23.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.||+.+++.+...|++|+.++|..
T Consensus 15 sggiG~~la~~l~~~g~~V~~~~r~~ 40 (239)
T PRK08703 15 SQGLGEQVAKAYAAAGATVILVARHQ 40 (239)
T ss_pred CCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 47899999999999999999998854
No 50
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=77.43 E-value=2.8 Score=29.31 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||.++|+.|...|.+|++.++.
T Consensus 25 SG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 25 TGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred chHHHHHHHHHHHhCCCEEEEEECc
Confidence 3899999999999999999998753
No 51
>PRK08339 short chain dehydrogenase; Provisional
Probab=77.34 E-value=3.2 Score=29.09 Aligned_cols=24 Identities=0% Similarity=-0.165 Sum_probs=22.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++|+.+...|++|+..+|.
T Consensus 18 ~gIG~aia~~l~~~G~~V~~~~r~ 41 (263)
T PRK08339 18 KGIGFGVARVLARAGADVILLSRN 41 (263)
T ss_pred CcHHHHHHHHHHHCCCEEEEEeCC
Confidence 579999999999999999998875
No 52
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=77.19 E-value=4.2 Score=23.18 Aligned_cols=25 Identities=0% Similarity=-0.214 Sum_probs=22.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|-+|-++|..++.+|.+|..+++..
T Consensus 8 G~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 8 GFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CHHHHHHHHHHHHhCcEEEEEeccc
Confidence 6799999999999999999887754
No 53
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.05 E-value=2.4 Score=28.74 Aligned_cols=26 Identities=8% Similarity=-0.135 Sum_probs=23.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.||+.+++.+..-|.+|+..+|..
T Consensus 14 ~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 14 SEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899999999999999999998753
No 54
>PRK06523 short chain dehydrogenase; Provisional
Probab=76.60 E-value=3.2 Score=28.65 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+...|++|+..+|.
T Consensus 18 s~gIG~~ia~~l~~~G~~v~~~~r~ 42 (260)
T PRK06523 18 TKGIGAATVARLLEAGARVVTTARS 42 (260)
T ss_pred CCchhHHHHHHHHHCCCEEEEEeCC
Confidence 3689999999999999999998875
No 55
>PRK06483 dihydromonapterin reductase; Provisional
Probab=76.31 E-value=3.5 Score=28.09 Aligned_cols=26 Identities=12% Similarity=-0.114 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.||+++|+.+..-|++|+..+|..
T Consensus 11 s~gIG~~ia~~l~~~G~~V~~~~r~~ 36 (236)
T PRK06483 11 GQRIGLALAWHLLAQGQPVIVSYRTH 36 (236)
T ss_pred CChHHHHHHHHHHHCCCeEEEEeCCc
Confidence 46799999999999999999888753
No 56
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=76.12 E-value=3.1 Score=30.66 Aligned_cols=24 Identities=4% Similarity=-0.046 Sum_probs=21.0
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|++|+++|+.++.+|++|+++++
T Consensus 11 ~G~mG~AiA~~L~~sG~~Viv~~~ 34 (314)
T TIGR00465 11 YGSQGHAQALNLRDSGLNVIVGLR 34 (314)
T ss_pred EcHHHHHHHHHHHHCCCeEEEEEC
Confidence 589999999999999999887654
No 57
>PRK08265 short chain dehydrogenase; Provisional
Probab=76.02 E-value=3.1 Score=28.99 Aligned_cols=26 Identities=8% Similarity=-0.070 Sum_probs=22.8
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.||+++++.+...|++|+..+|..
T Consensus 15 s~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 15 ATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 36899999999999999999988753
No 58
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.88 E-value=3.4 Score=31.29 Aligned_cols=26 Identities=0% Similarity=-0.198 Sum_probs=23.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.+|..+|+.|+..|.+|.++|+..
T Consensus 11 lG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 11 LGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred ECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 47899999999999999999999753
No 59
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=75.80 E-value=3.9 Score=29.64 Aligned_cols=25 Identities=12% Similarity=-0.118 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|-||+.+++.|...|.+|++.+|.
T Consensus 15 tGfiG~~l~~~L~~~G~~V~~~~r~ 39 (340)
T PLN02653 15 TGQDGSYLTEFLLSKGYEVHGIIRR 39 (340)
T ss_pred CCccHHHHHHHHHHCCCEEEEEecc
Confidence 4789999999999999999988753
No 60
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=75.50 E-value=2.7 Score=31.94 Aligned_cols=22 Identities=5% Similarity=-0.080 Sum_probs=20.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~ 105 (109)
|..|+.+|.+++++|++|++..
T Consensus 218 G~vGrG~A~~~rg~GA~ViVtE 239 (420)
T COG0499 218 GWVGRGIAMRLRGMGARVIVTE 239 (420)
T ss_pred cccchHHHHHhhcCCCeEEEEe
Confidence 6789999999999999999873
No 61
>PRK06180 short chain dehydrogenase; Provisional
Probab=75.45 E-value=3 Score=29.34 Aligned_cols=26 Identities=15% Similarity=0.008 Sum_probs=23.1
Q ss_pred hccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 82 LITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 82 l~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
-.|.||+.+++.|..-|++|+..+|.
T Consensus 12 asggiG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 12 VSSGFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCChHHHHHHHHHHhCcCEEEEEeCC
Confidence 35789999999999999999999874
No 62
>PRK07890 short chain dehydrogenase; Provisional
Probab=75.27 E-value=3.8 Score=28.17 Aligned_cols=26 Identities=8% Similarity=-0.089 Sum_probs=22.9
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.||+.+|+.+..-|++|+..+|..
T Consensus 14 ~~~IG~~la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 14 GPGLGRTLAVRAARAGADVVLAARTA 39 (258)
T ss_pred CCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 46899999999999999999998753
No 63
>PLN02712 arogenate dehydrogenase
Probab=75.24 E-value=3.1 Score=33.80 Aligned_cols=25 Identities=0% Similarity=-0.116 Sum_probs=23.0
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+|+.++.+|.+|++|||.
T Consensus 60 ~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 60 FGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3899999999999999999999975
No 64
>PRK06114 short chain dehydrogenase; Provisional
Probab=74.95 E-value=4.1 Score=28.15 Aligned_cols=25 Identities=0% Similarity=-0.266 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++|+.+...|++|+..+|.
T Consensus 17 s~gIG~~ia~~l~~~G~~v~~~~r~ 41 (254)
T PRK06114 17 GSGIGQRIAIGLAQAGADVALFDLR 41 (254)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3679999999999999999998864
No 65
>PRK07326 short chain dehydrogenase; Provisional
Probab=74.85 E-value=3.9 Score=27.73 Aligned_cols=25 Identities=8% Similarity=-0.093 Sum_probs=22.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+...|.+|+..+|.
T Consensus 15 tg~iG~~la~~l~~~g~~V~~~~r~ 39 (237)
T PRK07326 15 SKGIGFAIAEALLAEGYKVAITARD 39 (237)
T ss_pred CCcHHHHHHHHHHHCCCEEEEeeCC
Confidence 4789999999999899999999875
No 66
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=74.51 E-value=3.5 Score=27.23 Aligned_cols=24 Identities=4% Similarity=-0.108 Sum_probs=21.4
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|+.|+..++.++++|++|..+|..
T Consensus 29 G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 29 GRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp SHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CHHHHHHHHHHhHCCCEEEeccCC
Confidence 889999999999999999999865
No 67
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=74.24 E-value=2.8 Score=30.10 Aligned_cols=26 Identities=4% Similarity=-0.151 Sum_probs=23.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.+|..+|..+...|.+|+.||+..
T Consensus 11 aG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 11 SGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred ccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48899999999999999999999864
No 68
>PRK06398 aldose dehydrogenase; Validated
Probab=74.18 E-value=4.3 Score=28.26 Aligned_cols=25 Identities=4% Similarity=-0.162 Sum_probs=22.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++|+.+...|.+|+..+|.
T Consensus 15 s~gIG~~ia~~l~~~G~~Vi~~~r~ 39 (258)
T PRK06398 15 SQGIGKAVVNRLKEEGSNVINFDIK 39 (258)
T ss_pred CchHHHHHHHHHHHCCCeEEEEeCC
Confidence 4689999999999999999998875
No 69
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=74.11 E-value=4.1 Score=28.05 Aligned_cols=25 Identities=0% Similarity=-0.169 Sum_probs=22.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+...|.+|+..+|.
T Consensus 19 ~g~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 19 SQGIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred cchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4789999999999999999998875
No 70
>PRK06841 short chain dehydrogenase; Provisional
Probab=73.97 E-value=3.8 Score=28.12 Aligned_cols=25 Identities=4% Similarity=-0.160 Sum_probs=22.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||.++++.+...|++|+..+|.
T Consensus 24 s~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 24 ASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3789999999999999999998875
No 71
>PRK09620 hypothetical protein; Provisional
Probab=73.94 E-value=4 Score=28.66 Aligned_cols=24 Identities=4% Similarity=-0.006 Sum_probs=21.9
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|.||..+|+.|...|.+|++++.
T Consensus 28 SGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 28 KGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeC
Confidence 499999999999999999998774
No 72
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=73.48 E-value=3.8 Score=28.27 Aligned_cols=25 Identities=0% Similarity=-0.230 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+...|.+|+..+|.
T Consensus 11 ~~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 11 GQTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECC
Confidence 4789999999999999999998875
No 73
>PRK12828 short chain dehydrogenase; Provisional
Probab=73.44 E-value=4.2 Score=27.36 Aligned_cols=25 Identities=4% Similarity=-0.217 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+..-|.+|+..+|.
T Consensus 16 tg~iG~~la~~l~~~G~~v~~~~r~ 40 (239)
T PRK12828 16 FGGLGRATAAWLAARGARVALIGRG 40 (239)
T ss_pred CCcHhHHHHHHHHHCCCeEEEEeCC
Confidence 3789999999999889999999874
No 74
>PRK06949 short chain dehydrogenase; Provisional
Probab=73.11 E-value=3.3 Score=28.44 Aligned_cols=25 Identities=8% Similarity=-0.036 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+...|.+|+..+|.
T Consensus 18 sg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 18 SSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3789999999999999999998774
No 75
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=73.07 E-value=4.6 Score=27.84 Aligned_cols=25 Identities=12% Similarity=-0.041 Sum_probs=22.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.|..-|.+|+.++|.
T Consensus 17 s~gIG~~la~~l~~~G~~v~~~~r~ 41 (260)
T PRK12823 17 AQGIGRGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCc
Confidence 3689999999999999999999874
No 76
>PRK06194 hypothetical protein; Provisional
Probab=73.02 E-value=3.9 Score=28.69 Aligned_cols=25 Identities=16% Similarity=0.005 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.|...|.+|+..|+.
T Consensus 15 sggIG~~la~~l~~~G~~V~~~~r~ 39 (287)
T PRK06194 15 ASGFGLAFARIGAALGMKLVLADVQ 39 (287)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3689999999999999999998875
No 77
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.01 E-value=4.7 Score=28.07 Aligned_cols=23 Identities=9% Similarity=-0.161 Sum_probs=20.7
Q ss_pred chHHHHHHHHhhcCCEEEEEccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.||+++|+.+...|.+|+..+|.
T Consensus 23 GIG~a~a~~la~~G~~v~l~~r~ 45 (258)
T PRK07533 23 SIAWGCARAFRALGAELAVTYLN 45 (258)
T ss_pred cHHHHHHHHHHHcCCEEEEEeCC
Confidence 69999999999999999887764
No 78
>PLN02253 xanthoxin dehydrogenase
Probab=72.70 E-value=3.9 Score=28.65 Aligned_cols=24 Identities=4% Similarity=-0.169 Sum_probs=21.7
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++++.+...|++|+..++.
T Consensus 28 ~gIG~~la~~l~~~G~~v~~~~~~ 51 (280)
T PLN02253 28 TGIGESIVRLFHKHGAKVCIVDLQ 51 (280)
T ss_pred chHHHHHHHHHHHcCCEEEEEeCC
Confidence 689999999999999999998764
No 79
>PRK06179 short chain dehydrogenase; Provisional
Probab=72.53 E-value=4.3 Score=28.21 Aligned_cols=26 Identities=0% Similarity=-0.101 Sum_probs=23.1
Q ss_pred hccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 82 LITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 82 l~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
-.|.||+++++.+..-|.+|+..+|.
T Consensus 12 asg~iG~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 12 ASSGIGRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34789999999999999999998875
No 80
>PRK07577 short chain dehydrogenase; Provisional
Probab=72.45 E-value=5.5 Score=26.89 Aligned_cols=27 Identities=7% Similarity=-0.197 Sum_probs=23.6
Q ss_pred hccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 82 LITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 82 l~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
-.|.||+.+++.+..-|.+|+..+|..
T Consensus 11 ~s~~iG~~ia~~l~~~G~~v~~~~r~~ 37 (234)
T PRK07577 11 ATKGIGLALSLRLANLGHQVIGIARSA 37 (234)
T ss_pred CCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 347899999999999999999998754
No 81
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.06 E-value=5 Score=27.53 Aligned_cols=25 Identities=8% Similarity=-0.118 Sum_probs=22.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.|...|.+|+.++|.
T Consensus 11 sg~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 11 RRGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred CchHHHHHHHHHHHCCCEEEEEecC
Confidence 5789999999999999999998864
No 82
>PRK07035 short chain dehydrogenase; Provisional
Probab=72.01 E-value=3.8 Score=28.13 Aligned_cols=25 Identities=4% Similarity=-0.142 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||.++++.+...|++|+..+|.
T Consensus 17 s~gIG~~l~~~l~~~G~~Vi~~~r~ 41 (252)
T PRK07035 17 SRGIGEAIAKLLAQQGAHVIVSSRK 41 (252)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3689999999999999999998875
No 83
>KOG0725|consensus
Probab=72.01 E-value=4.2 Score=29.20 Aligned_cols=24 Identities=4% Similarity=-0.168 Sum_probs=21.8
Q ss_pred chHHHHHHHHhhcCCEEEEEcccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
-||+++|+++..+|++|+..+|..
T Consensus 19 GIG~aia~~la~~Ga~v~i~~r~~ 42 (270)
T KOG0725|consen 19 GIGKAIALLLAKAGAKVVITGRSE 42 (270)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCH
Confidence 599999999999999999998753
No 84
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=71.95 E-value=4.4 Score=27.97 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=22.8
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.||+++++.|...|++|+..+|..
T Consensus 15 s~~iG~~ia~~l~~~G~~v~~~~r~~ 40 (257)
T PRK07067 15 ASGIGEAVAERYLAEGARVVIADIKP 40 (257)
T ss_pred CchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 46899999999999999999988753
No 85
>PRK07831 short chain dehydrogenase; Provisional
Probab=71.87 E-value=4.7 Score=27.95 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=20.9
Q ss_pred chHHHHHHHHhhcCCEEEEEccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.||+++++.+...|.+|+..+|.
T Consensus 29 gIG~~ia~~l~~~G~~V~~~~~~ 51 (262)
T PRK07831 29 GIGSATARRALEEGARVVISDIH 51 (262)
T ss_pred cHHHHHHHHHHHcCCEEEEEeCC
Confidence 59999999999999999998764
No 86
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=71.84 E-value=3.9 Score=28.37 Aligned_cols=25 Identities=12% Similarity=-0.065 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+...|++|+..+|.
T Consensus 15 s~gIG~~ia~~l~~~G~~V~~~~r~ 39 (263)
T PRK06200 15 GSGIGRALVERFLAEGARVAVLERS 39 (263)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3679999999999999999998875
No 87
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=71.81 E-value=4.4 Score=27.92 Aligned_cols=24 Identities=0% Similarity=-0.208 Sum_probs=22.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++++.|...|.+|+..+|.
T Consensus 19 ~giG~~ia~~L~~~G~~vvl~~r~ 42 (254)
T PRK08085 19 QGIGFLLATGLAEYGAEIIINDIT 42 (254)
T ss_pred ChHHHHHHHHHHHcCCEEEEEcCC
Confidence 689999999999999999998875
No 88
>PRK07454 short chain dehydrogenase; Provisional
Probab=71.66 E-value=3.9 Score=27.87 Aligned_cols=25 Identities=4% Similarity=-0.149 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.|..-|.+|+..+|.
T Consensus 15 sg~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 15 SSGIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999999875
No 89
>PRK07856 short chain dehydrogenase; Provisional
Probab=71.64 E-value=4.9 Score=27.69 Aligned_cols=26 Identities=12% Similarity=-0.035 Sum_probs=22.8
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.||+++++.|..-|.+|+..+|..
T Consensus 15 s~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 15 TRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 46899999999999999999988753
No 90
>PRK06182 short chain dehydrogenase; Validated
Probab=71.64 E-value=4.1 Score=28.47 Aligned_cols=26 Identities=8% Similarity=-0.104 Sum_probs=22.9
Q ss_pred hccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 82 LITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 82 l~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
-.|.||+++++.+..-|.+|+..+|.
T Consensus 11 asggiG~~la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 11 ASSGIGKATARRLAAQGYTVYGAARR 36 (273)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999999999999998875
No 91
>PRK07062 short chain dehydrogenase; Provisional
Probab=71.58 E-value=4.6 Score=28.01 Aligned_cols=24 Identities=4% Similarity=-0.133 Sum_probs=22.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++++.+...|++|+..+|.
T Consensus 18 ~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 18 SGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred chHHHHHHHHHHHCCCeEEEEeCC
Confidence 679999999999999999998875
No 92
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.46 E-value=5.1 Score=27.30 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=23.4
Q ss_pred hccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 82 LITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 82 l~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
-.|.||+++++.+...|.+|+..+|..
T Consensus 13 asg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 13 ASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 347899999999999999999998753
No 93
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=71.34 E-value=4.6 Score=31.12 Aligned_cols=25 Identities=4% Similarity=-0.005 Sum_probs=20.9
Q ss_pred ccchHHHHHHHHhh-cCCEEEE-Eccc
Q psy15800 83 ITQSDTNHTQRCLA-SIMQLVY-STCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~-fg~~V~~-~~r~ 107 (109)
+|+||+.+.|.+.. ++++|++ .||.
T Consensus 93 FGRIGR~v~R~~~~~~~i~vvaINdp~ 119 (421)
T PLN02272 93 FGRIGRLVLRIATSRDDIEVVAVNDPF 119 (421)
T ss_pred cCHHHHHHHHHHhhcCCcEEEEecCCC
Confidence 48999999999885 8999998 5554
No 94
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=71.28 E-value=5.2 Score=27.64 Aligned_cols=25 Identities=8% Similarity=-0.191 Sum_probs=22.0
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+...|.+|++.|+.
T Consensus 19 ~~gIG~a~a~~l~~~G~~vv~~~~~ 43 (253)
T PRK08993 19 DTGLGQGMALGLAEAGCDIVGINIV 43 (253)
T ss_pred CchHHHHHHHHHHHCCCEEEEecCc
Confidence 3689999999999999999988753
No 95
>PRK06172 short chain dehydrogenase; Provisional
Probab=70.99 E-value=4.6 Score=27.75 Aligned_cols=25 Identities=4% Similarity=-0.146 Sum_probs=22.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+..-|.+|+..+|.
T Consensus 16 s~~iG~~ia~~l~~~G~~v~~~~r~ 40 (253)
T PRK06172 16 AAGIGRATALAFAREGAKVVVADRD 40 (253)
T ss_pred CchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4789999999999999999999875
No 96
>PRK12367 short chain dehydrogenase; Provisional
Probab=70.98 E-value=5.4 Score=27.87 Aligned_cols=25 Identities=12% Similarity=-0.094 Sum_probs=22.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|.||+++++.+...|++|+..+|..
T Consensus 24 ~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 24 GALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred cHHHHHHHHHHHHCCCEEEEEECCc
Confidence 5799999999999999999888753
No 97
>PRK07806 short chain dehydrogenase; Provisional
Probab=70.93 E-value=6 Score=27.01 Aligned_cols=25 Identities=4% Similarity=-0.109 Sum_probs=22.0
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+..-|.+|+..+|.
T Consensus 15 sggiG~~l~~~l~~~G~~V~~~~r~ 39 (248)
T PRK07806 15 SRGIGADTAKILAGAGAHVVVNYRQ 39 (248)
T ss_pred CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999988764
No 98
>PRK07074 short chain dehydrogenase; Provisional
Probab=70.89 E-value=4.7 Score=27.76 Aligned_cols=25 Identities=12% Similarity=-0.049 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.|...|++|+..+|.
T Consensus 11 t~~iG~~la~~L~~~g~~v~~~~r~ 35 (257)
T PRK07074 11 AGGIGQALARRFLAAGDRVLALDID 35 (257)
T ss_pred cchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999999999999999999875
No 99
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=70.78 E-value=5.1 Score=28.73 Aligned_cols=23 Identities=9% Similarity=-0.016 Sum_probs=20.7
Q ss_pred ccchHHHHHHHHhhcCCEEEEEc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~ 105 (109)
+|++|+.+|+.|..+|++|++++
T Consensus 46 fGnVG~~~a~~L~e~GakvvaVs 68 (254)
T cd05313 46 SGNVAQYAAEKLLELGAKVVTLS 68 (254)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEE
Confidence 48999999999999999999653
No 100
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=70.77 E-value=3.8 Score=23.99 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=21.5
Q ss_pred ccchHHHHHHHHhhcC---CEEE-EEcccc
Q psy15800 83 ITQSDTNHTQRCLASI---MQLV-YSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg---~~V~-~~~r~~ 108 (109)
.|++|+.+++.+..-| .+|. +++|..
T Consensus 7 ~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 7 AGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp TSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred CCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 4899999999999999 8998 447754
No 101
>PRK09186 flagellin modification protein A; Provisional
Probab=70.55 E-value=5 Score=27.51 Aligned_cols=26 Identities=4% Similarity=-0.201 Sum_probs=22.8
Q ss_pred hccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 82 LITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 82 l~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
-.|.||+.+|+.|..-|++|+..+|.
T Consensus 12 as~giG~~~a~~l~~~g~~v~~~~r~ 37 (256)
T PRK09186 12 AGGLIGSALVKAILEAGGIVIAADID 37 (256)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEecC
Confidence 34789999999999999999998765
No 102
>PRK09135 pteridine reductase; Provisional
Probab=70.55 E-value=5.7 Score=26.95 Aligned_cols=25 Identities=4% Similarity=-0.108 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+...|++|+..+|.
T Consensus 15 ~g~iG~~l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 15 ARRIGAAIARTLHAAGYRVAIHYHR 39 (249)
T ss_pred CchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4789999999999999999998874
No 103
>PRK07904 short chain dehydrogenase; Provisional
Probab=70.43 E-value=5.6 Score=27.68 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=21.3
Q ss_pred cchHHHHHHHHhhcC-CEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASI-MQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg-~~V~~~~r~~ 108 (109)
|.||+++|+.+..-| ++|+..+|..
T Consensus 18 ~giG~~la~~l~~~gg~~V~~~~r~~ 43 (253)
T PRK07904 18 SEIGLAICERYLKNAPARVVLAALPD 43 (253)
T ss_pred cHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 679999999998875 9999988753
No 104
>PRK05993 short chain dehydrogenase; Provisional
Probab=70.42 E-value=4.5 Score=28.46 Aligned_cols=26 Identities=0% Similarity=-0.148 Sum_probs=23.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.||+++|+.+..-|.+|+..+|..
T Consensus 13 sggiG~~la~~l~~~G~~Vi~~~r~~ 38 (277)
T PRK05993 13 SSGIGAYCARALQSDGWRVFATCRKE 38 (277)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 57899999999999999999988753
No 105
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.39 E-value=5.5 Score=30.56 Aligned_cols=24 Identities=4% Similarity=-0.245 Sum_probs=22.5
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|..|..+|+.|+..|++|.++|+.
T Consensus 23 G~sG~a~a~~L~~~G~~V~~~D~~ 46 (458)
T PRK01710 23 GVSNIPLIKFLVKLGAKVTAFDKK 46 (458)
T ss_pred cHHHHHHHHHHHHCCCEEEEECCC
Confidence 789999999999999999999964
No 106
>PRK08017 oxidoreductase; Provisional
Probab=70.38 E-value=4.9 Score=27.57 Aligned_cols=25 Identities=0% Similarity=-0.193 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+..-|.+|+..+|.
T Consensus 11 sg~IG~~la~~l~~~g~~v~~~~r~ 35 (256)
T PRK08017 11 SSGIGLEAALELKRRGYRVLAACRK 35 (256)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999999999999988775
No 107
>PRK05867 short chain dehydrogenase; Provisional
Probab=70.34 E-value=4.7 Score=27.77 Aligned_cols=24 Identities=8% Similarity=-0.067 Sum_probs=21.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++++.|...|.+|+..+|.
T Consensus 19 ~gIG~~ia~~l~~~G~~V~~~~r~ 42 (253)
T PRK05867 19 TGIGKRVALAYVEAGAQVAIAARH 42 (253)
T ss_pred chHHHHHHHHHHHCCCEEEEEcCC
Confidence 679999999999999999988875
No 108
>KOG1200|consensus
Probab=70.20 E-value=5.7 Score=27.99 Aligned_cols=24 Identities=4% Similarity=-0.170 Sum_probs=21.5
Q ss_pred chHHHHHHHHhhcCCEEEEEcccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.||+++++++..-|++|.+.|...
T Consensus 25 GIGrAia~~la~~Garv~v~dl~~ 48 (256)
T KOG1200|consen 25 GIGRAIAQLLAKKGARVAVADLDS 48 (256)
T ss_pred hHHHHHHHHHHhcCcEEEEeecch
Confidence 599999999999999999988653
No 109
>PRK07576 short chain dehydrogenase; Provisional
Probab=70.19 E-value=5.8 Score=27.67 Aligned_cols=25 Identities=4% Similarity=-0.088 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||..+++.+...|++|+..+|.
T Consensus 18 sggIG~~la~~l~~~G~~V~~~~r~ 42 (264)
T PRK07576 18 TSGINLGIAQAFARAGANVAVASRS 42 (264)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999999875
No 110
>PRK08278 short chain dehydrogenase; Provisional
Probab=70.03 E-value=6 Score=27.80 Aligned_cols=25 Identities=8% Similarity=-0.098 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+...|.+|+..+|.
T Consensus 15 s~gIG~~ia~~l~~~G~~V~~~~r~ 39 (273)
T PRK08278 15 SRGIGLAIALRAARDGANIVIAAKT 39 (273)
T ss_pred CchHHHHHHHHHHHCCCEEEEEecc
Confidence 4689999999999999999998875
No 111
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.80 E-value=6.6 Score=26.57 Aligned_cols=25 Identities=12% Similarity=-0.083 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+...|++|+..+|.
T Consensus 14 s~~iG~~ia~~l~~~G~~v~~~~r~ 38 (235)
T PRK06550 14 ASGIGLAQARAFLAQGAQVYGVDKQ 38 (235)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999999999999999998874
No 112
>PRK08264 short chain dehydrogenase; Validated
Probab=69.57 E-value=5.2 Score=27.17 Aligned_cols=26 Identities=8% Similarity=-0.097 Sum_probs=22.8
Q ss_pred ccchHHHHHHHHhhcCC-EEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIM-QLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~-~V~~~~r~~ 108 (109)
.|.||+++|+.|..-|. +|+..+|..
T Consensus 15 sg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 15 NRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CchHHHHHHHHHHHCCcccEEEEecCh
Confidence 47899999999999999 999888753
No 113
>PRK06500 short chain dehydrogenase; Provisional
Probab=69.35 E-value=6.4 Score=26.82 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+...|++|+..+|.
T Consensus 15 sg~iG~~la~~l~~~g~~v~~~~r~ 39 (249)
T PRK06500 15 TSGIGLETARQFLAEGARVAITGRD 39 (249)
T ss_pred CchHHHHHHHHHHHCCCEEEEecCC
Confidence 4789999999999999999988874
No 114
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=69.35 E-value=5.8 Score=28.93 Aligned_cols=25 Identities=4% Similarity=-0.275 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|-||+.+++.|..-|.+|++.+|.
T Consensus 13 tG~IG~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 13 TGFKGSWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred CChhHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999998864
No 115
>PRK08251 short chain dehydrogenase; Provisional
Probab=69.22 E-value=4.8 Score=27.51 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+..-|++|+..+|.
T Consensus 11 s~giG~~la~~l~~~g~~v~~~~r~ 35 (248)
T PRK08251 11 SSGLGAGMAREFAAKGRDLALCARR 35 (248)
T ss_pred CCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4789999999999999999988875
No 116
>PRK07063 short chain dehydrogenase; Provisional
Probab=69.19 E-value=5.5 Score=27.53 Aligned_cols=25 Identities=0% Similarity=-0.170 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+..-|.+|+..+|.
T Consensus 16 s~gIG~~~a~~l~~~G~~vv~~~r~ 40 (260)
T PRK07063 16 AQGIGAAIARAFAREGAAVALADLD 40 (260)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3689999999999999999998874
No 117
>PRK12939 short chain dehydrogenase; Provisional
Probab=69.07 E-value=5.4 Score=27.15 Aligned_cols=25 Identities=0% Similarity=-0.037 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+...|++|+..+|.
T Consensus 16 ~g~iG~~la~~l~~~G~~v~~~~r~ 40 (250)
T PRK12939 16 ARGLGAAFAEALAEAGATVAFNDGL 40 (250)
T ss_pred CChHHHHHHHHHHHcCCEEEEEeCC
Confidence 4789999999999999999988764
No 118
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.04 E-value=5.7 Score=30.24 Aligned_cols=24 Identities=0% Similarity=-0.129 Sum_probs=22.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|..+|+.|+..|.+|.++|..
T Consensus 15 G~sG~s~a~~L~~~G~~v~~~D~~ 38 (448)
T PRK03803 15 GKTGLSVVRFLARQGIPFAVMDSR 38 (448)
T ss_pred cHhHHHHHHHHHhCCCeEEEEeCC
Confidence 789999999999999999999964
No 119
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=69.02 E-value=4.4 Score=29.55 Aligned_cols=26 Identities=4% Similarity=-0.234 Sum_probs=23.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.+|..+|..|..-|.+|..|+|..
T Consensus 12 ~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 12 AGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999999999999999999999863
No 120
>PRK06125 short chain dehydrogenase; Provisional
Probab=69.01 E-value=6.1 Score=27.31 Aligned_cols=24 Identities=8% Similarity=-0.114 Sum_probs=21.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++++.+...|++|+..+|.
T Consensus 17 ~giG~~ia~~l~~~G~~V~~~~r~ 40 (259)
T PRK06125 17 KGIGAAAAEAFAAEGCHLHLVARD 40 (259)
T ss_pred chHHHHHHHHHHHcCCEEEEEeCC
Confidence 679999999999999999998875
No 121
>PRK08862 short chain dehydrogenase; Provisional
Probab=68.91 E-value=5.4 Score=27.44 Aligned_cols=25 Identities=4% Similarity=-0.149 Sum_probs=22.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
+.||+++++.+...|++|+..+|..
T Consensus 15 ~GIG~aia~~la~~G~~V~~~~r~~ 39 (227)
T PRK08862 15 SVLGRTISCHFARLGATLILCDQDQ 39 (227)
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4799999999999999999988753
No 122
>PRK09291 short chain dehydrogenase; Provisional
Probab=68.85 E-value=6.3 Score=27.04 Aligned_cols=25 Identities=4% Similarity=-0.165 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.|...|++|+..+|.
T Consensus 11 sg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 11 GSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999999999999988764
No 123
>PRK07814 short chain dehydrogenase; Provisional
Probab=68.55 E-value=6.7 Score=27.25 Aligned_cols=25 Identities=0% Similarity=-0.209 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+...|++|+..+|.
T Consensus 19 sggIG~~~a~~l~~~G~~Vi~~~r~ 43 (263)
T PRK07814 19 GRGLGAAIALAFAEAGADVLIAART 43 (263)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3689999999999999999998875
No 124
>PRK07825 short chain dehydrogenase; Provisional
Probab=68.43 E-value=5 Score=27.99 Aligned_cols=25 Identities=4% Similarity=-0.169 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.|...|.+|+..+|.
T Consensus 14 sggiG~~la~~l~~~G~~v~~~~r~ 38 (273)
T PRK07825 14 ARGIGLATARALAALGARVAIGDLD 38 (273)
T ss_pred CchHHHHHHHHHHHCCCEEEEEECC
Confidence 4689999999999999999988764
No 125
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=68.42 E-value=6.5 Score=27.20 Aligned_cols=24 Identities=8% Similarity=-0.165 Sum_probs=21.6
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
+.||+++|+++..-|++|+..+|.
T Consensus 18 ~gIG~aia~~l~~~G~~vv~~~~~ 41 (251)
T PRK12481 18 TGLGQGMAIGLAKAGADIVGVGVA 41 (251)
T ss_pred chHHHHHHHHHHHCCCEEEEecCc
Confidence 689999999999999999988764
No 126
>PRK05717 oxidoreductase; Validated
Probab=68.35 E-value=6.4 Score=27.13 Aligned_cols=25 Identities=12% Similarity=-0.062 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++|+.+..-|++|+..++.
T Consensus 19 sg~IG~~~a~~l~~~g~~v~~~~~~ 43 (255)
T PRK05717 19 ARGIGLGIAAWLIAEGWQVVLADLD 43 (255)
T ss_pred cchHHHHHHHHHHHcCCEEEEEcCC
Confidence 3789999999999999999988764
No 127
>PRK12829 short chain dehydrogenase; Provisional
Probab=68.28 E-value=6.2 Score=27.13 Aligned_cols=25 Identities=0% Similarity=-0.140 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.|...|.+|+..+|.
T Consensus 20 ~g~iG~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 20 ASGIGRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999998875
No 128
>PRK05866 short chain dehydrogenase; Provisional
Probab=68.28 E-value=4.9 Score=28.75 Aligned_cols=24 Identities=4% Similarity=-0.108 Sum_probs=21.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++|+.+..-|.+|+..+|.
T Consensus 50 ggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 50 SGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred cHHHHHHHHHHHHCCCEEEEEECC
Confidence 679999999999999999998875
No 129
>PRK07478 short chain dehydrogenase; Provisional
Probab=68.21 E-value=5.9 Score=27.27 Aligned_cols=25 Identities=4% Similarity=-0.122 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+..-|.+|+..+|.
T Consensus 15 s~giG~~ia~~l~~~G~~v~~~~r~ 39 (254)
T PRK07478 15 SSGIGRAAAKLFAREGAKVVVGARR 39 (254)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999999999999999988875
No 130
>PLN02780 ketoreductase/ oxidoreductase
Probab=68.20 E-value=4.2 Score=29.64 Aligned_cols=25 Identities=8% Similarity=-0.057 Sum_probs=22.4
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|.||+++|+.+..-|++|+..+|..
T Consensus 63 ~GIG~alA~~La~~G~~Vil~~R~~ 87 (320)
T PLN02780 63 DGIGKGFAFQLARKGLNLVLVARNP 87 (320)
T ss_pred cHHHHHHHHHHHHCCCCEEEEECCH
Confidence 5799999999999999999998753
No 131
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.14 E-value=6.4 Score=26.77 Aligned_cols=25 Identities=4% Similarity=-0.160 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+...|.+|+..+|.
T Consensus 14 ~g~iG~~~a~~l~~~G~~vi~~~r~ 38 (253)
T PRK08217 14 AQGLGRAMAEYLAQKGAKLALIDLN 38 (253)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999998875
No 132
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.12 E-value=5.4 Score=27.13 Aligned_cols=25 Identities=0% Similarity=-0.316 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.|..-|.+|+..+|.
T Consensus 16 sg~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 16 GRGIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999999999999999998875
No 133
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.87 E-value=4.7 Score=28.91 Aligned_cols=26 Identities=8% Similarity=0.088 Sum_probs=23.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.+|..+|..+..-|.+|+.||+..
T Consensus 12 aG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 12 AGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48899999999999999999999864
No 134
>PRK07024 short chain dehydrogenase; Provisional
Probab=67.69 E-value=5.1 Score=27.72 Aligned_cols=25 Identities=4% Similarity=-0.180 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.|..-|.+|+..+|.
T Consensus 11 s~gIG~~la~~l~~~G~~v~~~~r~ 35 (257)
T PRK07024 11 SSGIGQALAREYARQGATLGLVARR 35 (257)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999998874
No 135
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.58 E-value=5 Score=28.95 Aligned_cols=26 Identities=8% Similarity=0.073 Sum_probs=23.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.+|..+|..+...|.+|+.||+..
T Consensus 13 aG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 13 AGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred ccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 37899999999999999999999864
No 136
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=67.54 E-value=7.1 Score=26.65 Aligned_cols=25 Identities=8% Similarity=-0.194 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+|+.+..-|.+|+..+|.
T Consensus 14 s~gIG~~ia~~l~~~G~~vi~~~r~ 38 (248)
T TIGR01832 14 NTGLGQGIAVGLAEAGADIVGAGRS 38 (248)
T ss_pred CchHHHHHHHHHHHCCCEEEEEcCc
Confidence 4689999999999999999998874
No 137
>KOG1209|consensus
Probab=67.41 E-value=7.6 Score=27.76 Aligned_cols=26 Identities=0% Similarity=-0.273 Sum_probs=23.8
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.||-++|+.+..-|+.|++..|..
T Consensus 17 ~GGIG~ala~ef~~~G~~V~AtaR~~ 42 (289)
T KOG1209|consen 17 SGGIGYALAKEFARNGYLVYATARRL 42 (289)
T ss_pred CcchhHHHHHHHHhCCeEEEEEcccc
Confidence 38899999999999999999998865
No 138
>PRK06196 oxidoreductase; Provisional
Probab=67.38 E-value=5.6 Score=28.59 Aligned_cols=24 Identities=4% Similarity=-0.050 Sum_probs=22.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++++.+..-|.+|+..+|.
T Consensus 36 ggIG~~~a~~L~~~G~~Vv~~~R~ 59 (315)
T PRK06196 36 SGLGLETTRALAQAGAHVIVPARR 59 (315)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCC
Confidence 689999999999999999998875
No 139
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=67.35 E-value=8 Score=26.79 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.||+++++.|..-|.+|+..++..
T Consensus 18 s~gIG~~la~~l~~~G~~v~~~~~~~ 43 (266)
T PRK06171 18 SSGIGLAIVKELLANGANVVNADIHG 43 (266)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCc
Confidence 36899999999999999999887653
No 140
>PRK05876 short chain dehydrogenase; Provisional
Probab=67.33 E-value=7.1 Score=27.58 Aligned_cols=25 Identities=4% Similarity=-0.108 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++|+.|...|++|+..++.
T Consensus 15 s~gIG~ala~~La~~G~~Vv~~~r~ 39 (275)
T PRK05876 15 ASGIGLATGTEFARRGARVVLGDVD 39 (275)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999999999999999988764
No 141
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.23 E-value=7.6 Score=26.93 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=21.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
+.||+++|+.|..-|++|+..+|.
T Consensus 19 ~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 19 RSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred CchHHHHHHHHHHCCCEEEEecCc
Confidence 369999999999999999988764
No 142
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=67.09 E-value=6.1 Score=27.62 Aligned_cols=24 Identities=0% Similarity=-0.208 Sum_probs=21.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++++.|...|.+|+..+|.
T Consensus 20 ~giG~~ia~~l~~~G~~V~~~~r~ 43 (278)
T PRK08277 20 GVLGGAMAKELARAGAKVAILDRN 43 (278)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCC
Confidence 679999999999999999998875
No 143
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=66.82 E-value=5.7 Score=25.28 Aligned_cols=25 Identities=4% Similarity=-0.211 Sum_probs=21.8
Q ss_pred cchHHHHHHHHhhcC-CEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASI-MQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg-~~V~~~~r~~ 108 (109)
|.+|+.+++.+...| .+|..+||..
T Consensus 28 G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 28 GGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 789999999999886 6899999864
No 144
>PRK09072 short chain dehydrogenase; Provisional
Probab=66.72 E-value=7.5 Score=26.94 Aligned_cols=25 Identities=8% Similarity=-0.116 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+...|.+|+..+|.
T Consensus 14 s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 14 SGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CchHHHHHHHHHHHCCCEEEEEECC
Confidence 4689999999999999999998875
No 145
>PRK06138 short chain dehydrogenase; Provisional
Probab=66.54 E-value=6.6 Score=26.79 Aligned_cols=25 Identities=4% Similarity=-0.164 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+..-|++|+..+|.
T Consensus 14 sg~iG~~la~~l~~~G~~v~~~~r~ 38 (252)
T PRK06138 14 GSGIGRATAKLFAREGARVVVADRD 38 (252)
T ss_pred CchHHHHHHHHHHHCCCeEEEecCC
Confidence 4789999999999999999988765
No 146
>PRK05875 short chain dehydrogenase; Provisional
Probab=66.50 E-value=6.9 Score=27.29 Aligned_cols=25 Identities=4% Similarity=-0.162 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+..-|.+|+.++|.
T Consensus 16 sg~IG~~la~~l~~~G~~V~~~~r~ 40 (276)
T PRK05875 16 GSGIGKGVAAGLVAAGAAVMIVGRN 40 (276)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3789999999999999999998875
No 147
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=66.43 E-value=4.4 Score=25.77 Aligned_cols=25 Identities=4% Similarity=-0.177 Sum_probs=22.6
Q ss_pred cchHHHHHHHHhhcCCE-EEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r~~ 108 (109)
|..|+.++..|...|++ |..++|+.
T Consensus 21 Gg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 21 GGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp SHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 78999999999999997 99999864
No 148
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=66.13 E-value=7 Score=29.37 Aligned_cols=25 Identities=4% Similarity=-0.178 Sum_probs=22.4
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|.||+.+++.|..-|.+|++++|..
T Consensus 70 G~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 70 GYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred cHHHHHHHHHHHHCCCEEEEEEech
Confidence 7899999999999999999998753
No 149
>PRK06057 short chain dehydrogenase; Provisional
Probab=66.08 E-value=6.7 Score=27.02 Aligned_cols=25 Identities=12% Similarity=-0.071 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+...|++|+..+|.
T Consensus 16 sggIG~~~a~~l~~~G~~v~~~~r~ 40 (255)
T PRK06057 16 GSGIGLATARRLAAEGATVVVGDID 40 (255)
T ss_pred CchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4789999999999999999998764
No 150
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=66.07 E-value=6.9 Score=26.80 Aligned_cols=25 Identities=0% Similarity=-0.245 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||..+++.|...|++|+..+|.
T Consensus 21 ~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 21 GDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred CchHHHHHHHHHHHCCCcEEEEeCC
Confidence 3689999999999999999999875
No 151
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=65.93 E-value=7.2 Score=27.13 Aligned_cols=22 Identities=0% Similarity=-0.108 Sum_probs=19.7
Q ss_pred ccchHHHHHHHHhhcCCEEEEE
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYS 104 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~ 104 (109)
+|++|+.+|+.|...|.+|++.
T Consensus 31 fGnVG~~~a~~L~~~G~~vV~v 52 (217)
T cd05211 31 LGNVGWGLAKKLAEEGGKVLAV 52 (217)
T ss_pred CCHHHHHHHHHHHHcCCEEEEE
Confidence 4899999999999999987765
No 152
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=65.71 E-value=8.1 Score=26.65 Aligned_cols=25 Identities=8% Similarity=-0.142 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||..+|+.+...|.+|+..+|.
T Consensus 21 ~g~IG~~la~~l~~~G~~V~~~~r~ 45 (259)
T PRK08213 21 SRGLGLQIAEALGEAGARVVLSARK 45 (259)
T ss_pred CchHHHHHHHHHHHcCCEEEEEeCC
Confidence 3789999999999999999998874
No 153
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=65.46 E-value=5.5 Score=31.03 Aligned_cols=26 Identities=8% Similarity=-0.143 Sum_probs=23.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.+|..+|..+..-|.+|..||+..
T Consensus 12 ~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 12 GGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred cCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 48999999999999999999999864
No 154
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=65.15 E-value=8.1 Score=26.31 Aligned_cols=25 Identities=4% Similarity=-0.193 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+...|.+|+..+|.
T Consensus 12 s~~iG~~la~~l~~~g~~v~~~~r~ 36 (250)
T TIGR03206 12 GGGIGGATCRRFAEEGAKVAVFDLN 36 (250)
T ss_pred CChHHHHHHHHHHHCCCEEEEecCC
Confidence 4789999999999999999988765
No 155
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=65.00 E-value=7.1 Score=26.69 Aligned_cols=27 Identities=4% Similarity=-0.146 Sum_probs=23.3
Q ss_pred hhccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 81 ELITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 81 ~l~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.-.|.||+.+++.+...|.+|+..+|.
T Consensus 11 G~sg~iG~~la~~l~~~g~~v~~~~r~ 37 (258)
T PRK12429 11 GAASGIGLEIALALAKEGAKVVIADLN 37 (258)
T ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 345889999999999999999998875
No 156
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=64.94 E-value=6.4 Score=31.57 Aligned_cols=24 Identities=4% Similarity=-0.061 Sum_probs=22.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+.+++.|...|.+|.+++|.
T Consensus 90 GgIG~aLAr~LLk~G~~Vval~Rn 113 (576)
T PLN03209 90 GKVGSRTVRELLKLGFRVRAGVRS 113 (576)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 789999999999999999998875
No 157
>PRK07774 short chain dehydrogenase; Provisional
Probab=64.84 E-value=7.3 Score=26.57 Aligned_cols=25 Identities=4% Similarity=-0.141 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+...|.+|+..+|.
T Consensus 15 sg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 15 AGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999999875
No 158
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=64.84 E-value=7.9 Score=29.53 Aligned_cols=24 Identities=0% Similarity=-0.165 Sum_probs=22.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|.++|+.+...|.+|+++++.
T Consensus 214 G~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 214 GKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred chHHHHHHHHHHHCCCEEEEeCCC
Confidence 889999999999999999998753
No 159
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=64.81 E-value=8.6 Score=26.41 Aligned_cols=25 Identities=0% Similarity=-0.162 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+..-|.+|+.++|.
T Consensus 20 s~~IG~~la~~l~~~G~~v~~~~r~ 44 (256)
T PRK06124 20 ARGLGFEIARALAGAGAHVLVNGRN 44 (256)
T ss_pred CchHHHHHHHHHHHcCCeEEEEeCC
Confidence 3689999999999999999999875
No 160
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=64.76 E-value=9.7 Score=22.11 Aligned_cols=23 Identities=4% Similarity=-0.087 Sum_probs=20.3
Q ss_pred cchHHHHHHHHhhc-CCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLAS-IMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~f-g~~V~~~~r 106 (109)
|.+|+.+++.+..+ +.+|..+||
T Consensus 32 G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 32 GEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 88999999999988 678888886
No 161
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.66 E-value=7.8 Score=29.36 Aligned_cols=24 Identities=4% Similarity=-0.158 Sum_probs=21.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|..+|+.|...|++|+++|+.
T Consensus 14 g~~G~s~a~~l~~~G~~V~~~d~~ 37 (447)
T PRK02472 14 AKSGYAAAKLLHKLGANVTVNDGK 37 (447)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCC
Confidence 569999999999999999999864
No 162
>PRK08589 short chain dehydrogenase; Validated
Probab=64.59 E-value=8.6 Score=26.93 Aligned_cols=25 Identities=4% Similarity=-0.222 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+..-|.+|+..+|.
T Consensus 15 s~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 15 STGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCc
Confidence 3679999999999999999998864
No 163
>PRK08643 acetoin reductase; Validated
Probab=64.26 E-value=8.9 Score=26.35 Aligned_cols=25 Identities=4% Similarity=-0.096 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+...|++|+..+|.
T Consensus 11 s~giG~~la~~l~~~G~~v~~~~r~ 35 (256)
T PRK08643 11 GQGIGFAIAKRLVEDGFKVAIVDYN 35 (256)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999988764
No 164
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=64.21 E-value=8.1 Score=26.05 Aligned_cols=26 Identities=12% Similarity=-0.061 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.||+.+++.+...|.+|+..+|..
T Consensus 14 sg~iG~~l~~~l~~~g~~v~~~~r~~ 39 (246)
T PRK05653 14 SRGIGRAIALRLAADGAKVVIYDSNE 39 (246)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 47899999999999999999988753
No 165
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.98 E-value=6.2 Score=28.45 Aligned_cols=26 Identities=8% Similarity=-0.032 Sum_probs=23.0
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.+|..+|..+..-|.+|+.||+..
T Consensus 12 aG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 12 AGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 48899999999999999999999753
No 166
>PRK08226 short chain dehydrogenase; Provisional
Probab=63.98 E-value=9 Score=26.42 Aligned_cols=25 Identities=4% Similarity=-0.090 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.|...|.+|+..+|.
T Consensus 15 s~giG~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 15 LQGIGEGIARVFARHGANLILLDIS 39 (263)
T ss_pred CChHHHHHHHHHHHCCCEEEEecCC
Confidence 4689999999999999999998875
No 167
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.90 E-value=8.1 Score=29.29 Aligned_cols=24 Identities=4% Similarity=-0.183 Sum_probs=22.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|.++|+.|...|.+|.++|+.
T Consensus 14 g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 14 GVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 569999999999999999999985
No 168
>PRK06914 short chain dehydrogenase; Provisional
Probab=63.63 E-value=8.1 Score=26.99 Aligned_cols=25 Identities=4% Similarity=-0.218 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+...|.+|+.++|.
T Consensus 12 sg~iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 12 SSGFGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CchHHHHHHHHHHhCCCEEEEEeCC
Confidence 4789999999999999999998764
No 169
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=63.46 E-value=6.4 Score=28.17 Aligned_cols=25 Identities=4% Similarity=-0.197 Sum_probs=22.5
Q ss_pred cchHHHHHHHHhhcC-CEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASI-MQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg-~~V~~~~r~~ 108 (109)
|.+|+.++..|..+| .+|..++|..
T Consensus 132 Gg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 132 GGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred cHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 679999999999999 6899999864
No 170
>PRK08818 prephenate dehydrogenase; Provisional
Probab=63.29 E-value=8.6 Score=29.07 Aligned_cols=27 Identities=0% Similarity=-0.245 Sum_probs=22.9
Q ss_pred hhccchHHHHHHHHhh-cCCEEEEEccc
Q psy15800 81 ELITQSDTNHTQRCLA-SIMQLVYSTCY 107 (109)
Q Consensus 81 ~l~G~IG~~va~~~~~-fg~~V~~~~r~ 107 (109)
.+.|.||+.+|+.++. ++.+|+++|+.
T Consensus 11 Gl~GliGgslA~alk~~~~~~V~g~D~~ 38 (370)
T PRK08818 11 GSAGAYGRWLARFLRTRMQLEVIGHDPA 38 (370)
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 3458999999999995 69999999973
No 171
>KOG0023|consensus
Probab=63.19 E-value=8.1 Score=29.01 Aligned_cols=23 Identities=13% Similarity=-0.094 Sum_probs=20.4
Q ss_pred chHHHHHHHHhhcCCEEEEEccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
-+|.--.+.++||||+|++.|+.
T Consensus 192 GLGh~aVq~AKAMG~rV~vis~~ 214 (360)
T KOG0023|consen 192 GLGHMAVQYAKAMGMRVTVISTS 214 (360)
T ss_pred ccchHHHHHHHHhCcEEEEEeCC
Confidence 38888888999999999999976
No 172
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=63.10 E-value=12 Score=27.46 Aligned_cols=25 Identities=4% Similarity=-0.117 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|-||+.+++.|..-|.+|+++|+.
T Consensus 24 tGfiG~~lv~~L~~~g~~V~~~d~~ 48 (348)
T PRK15181 24 AGFIGSGLLEELLFLNQTVIGLDNF 48 (348)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4889999999999999999999874
No 173
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=62.93 E-value=8.9 Score=26.56 Aligned_cols=24 Identities=8% Similarity=-0.017 Sum_probs=21.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+.+++.|..-|.+|++..|.
T Consensus 27 G~iG~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 27 GRTGKRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred cHHHHHHHHHHHhCCCEEEEEecC
Confidence 789999999999889999987664
No 174
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=62.85 E-value=9.8 Score=26.25 Aligned_cols=24 Identities=8% Similarity=-0.083 Sum_probs=21.5
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+.+++.+...|++|+..++.
T Consensus 25 ~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 25 TGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCC
Confidence 689999999999999999988764
No 175
>PRK09414 glutamate dehydrogenase; Provisional
Probab=62.85 E-value=8.3 Score=29.94 Aligned_cols=21 Identities=5% Similarity=-0.067 Sum_probs=20.3
Q ss_pred cchHHHHHHHHhhcCCEEEEE
Q psy15800 84 TQSDTNHTQRCLASIMQLVYS 104 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~ 104 (109)
|++|+.+|+.|..+|++|++.
T Consensus 241 GnVG~~~A~~L~~~GakVVav 261 (445)
T PRK09414 241 GNVAIYAIEKAQQLGAKVVTC 261 (445)
T ss_pred CHHHHHHHHHHHHCCCEEEEE
Confidence 899999999999999999988
No 176
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=62.83 E-value=8.3 Score=26.57 Aligned_cols=24 Identities=8% Similarity=-0.085 Sum_probs=21.7
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+.+++.+...|++|+..+|.
T Consensus 21 ~gIG~~la~~l~~~G~~vv~~~r~ 44 (255)
T PRK06113 21 AGIGKEIAITFATAGASVVVSDIN 44 (255)
T ss_pred chHHHHHHHHHHHCCCeEEEEeCC
Confidence 689999999999999999988765
No 177
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.77 E-value=10 Score=26.38 Aligned_cols=24 Identities=4% Similarity=-0.093 Sum_probs=21.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
+.||+++|+.+..-|.+|+..+|.
T Consensus 19 ~GIG~a~a~~la~~G~~v~l~~r~ 42 (256)
T PRK07889 19 SSIAFHVARVAQEQGAEVVLTGFG 42 (256)
T ss_pred chHHHHHHHHHHHCCCEEEEecCc
Confidence 479999999999999999988754
No 178
>PRK06197 short chain dehydrogenase; Provisional
Probab=62.75 E-value=10 Score=27.05 Aligned_cols=24 Identities=13% Similarity=-0.046 Sum_probs=21.5
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++|+.+...|.+|+..+|.
T Consensus 26 ~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 26 TGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CcHHHHHHHHHHHCCCEEEEEeCC
Confidence 679999999999999999888764
No 179
>PRK14030 glutamate dehydrogenase; Provisional
Probab=62.71 E-value=8.8 Score=29.82 Aligned_cols=20 Identities=5% Similarity=-0.090 Sum_probs=19.5
Q ss_pred cchHHHHHHHHhhcCCEEEE
Q psy15800 84 TQSDTNHTQRCLASIMQLVY 103 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~ 103 (109)
|++|+..|+.|..+|++|++
T Consensus 237 GnVG~~aA~~L~e~GakvVa 256 (445)
T PRK14030 237 GNVAWGAATKATELGAKVVT 256 (445)
T ss_pred CHHHHHHHHHHHHCCCEEEE
Confidence 89999999999999999999
No 180
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=62.68 E-value=7.1 Score=30.66 Aligned_cols=26 Identities=4% Similarity=-0.097 Sum_probs=23.9
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|..|+.+|+.+..-|.+|.+|||++
T Consensus 14 LG~MG~~mA~nL~~~G~~V~V~NRt~ 39 (493)
T PLN02350 14 LAVMGQNLALNIAEKGFPISVYNRTT 39 (493)
T ss_pred eHHHHHHHHHHHHhCCCeEEEECCCH
Confidence 48899999999999999999999974
No 181
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.68 E-value=11 Score=26.77 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=21.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
+.||+++|+.+..-|++|+..+|.
T Consensus 17 ~GIG~aiA~~la~~G~~Vil~~r~ 40 (274)
T PRK08415 17 KSIAYGIAKACFEQGAELAFTYLN 40 (274)
T ss_pred CCHHHHHHHHHHHCCCEEEEEecC
Confidence 369999999999999999988764
No 182
>PRK06198 short chain dehydrogenase; Provisional
Probab=62.66 E-value=7.7 Score=26.69 Aligned_cols=25 Identities=8% Similarity=-0.124 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHhhcCCE-EEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQ-LVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~-V~~~~r~ 107 (109)
.|.||+.+++.+...|.+ |+.++|.
T Consensus 15 ~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 15 TQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 478999999999999999 9888875
No 183
>PRK05872 short chain dehydrogenase; Provisional
Probab=62.61 E-value=7.4 Score=27.74 Aligned_cols=25 Identities=12% Similarity=-0.041 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+..-|++|+..+|.
T Consensus 18 s~gIG~~ia~~l~~~G~~V~~~~r~ 42 (296)
T PRK05872 18 ARGIGAELARRLHARGAKLALVDLE 42 (296)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3679999999999999999988874
No 184
>PRK08628 short chain dehydrogenase; Provisional
Probab=62.42 E-value=9.3 Score=26.28 Aligned_cols=25 Identities=8% Similarity=-0.217 Sum_probs=21.9
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+|+.+...|.+|+..+|.
T Consensus 16 sggiG~~la~~l~~~G~~v~~~~r~ 40 (258)
T PRK08628 16 ASGIGAAISLRLAEEGAIPVIFGRS 40 (258)
T ss_pred CChHHHHHHHHHHHcCCcEEEEcCC
Confidence 3689999999999999999888764
No 185
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.74 E-value=6.5 Score=28.03 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=23.0
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.+|..+|..+...|.+|+.+|+..
T Consensus 11 ~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 11 AGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 48899999999999999999999753
No 186
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=61.73 E-value=9.3 Score=26.53 Aligned_cols=24 Identities=4% Similarity=-0.057 Sum_probs=21.7
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++++.+...|.+|+..++.
T Consensus 20 ~~iG~~ia~~l~~~G~~vv~~~~~ 43 (265)
T PRK07097 20 YGIGFAIAKAYAKAGATIVFNDIN 43 (265)
T ss_pred chHHHHHHHHHHHCCCeEEEEeCC
Confidence 689999999999999999988765
No 187
>PRK07060 short chain dehydrogenase; Provisional
Probab=61.61 E-value=8.4 Score=26.14 Aligned_cols=24 Identities=4% Similarity=-0.139 Sum_probs=21.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+.+++.+...|.+|+..+|.
T Consensus 19 g~iG~~~a~~l~~~g~~V~~~~r~ 42 (245)
T PRK07060 19 SGIGRACAVALAQRGARVVAAARN 42 (245)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCC
Confidence 689999999999999999999875
No 188
>PRK06139 short chain dehydrogenase; Provisional
Probab=61.59 E-value=7.6 Score=28.50 Aligned_cols=25 Identities=8% Similarity=-0.055 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+..-|++|+..+|.
T Consensus 16 s~GIG~aia~~la~~G~~Vvl~~R~ 40 (330)
T PRK06139 16 SSGIGQATAEAFARRGARLVLAARD 40 (330)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3679999999999999999998875
No 189
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=61.55 E-value=9.6 Score=27.14 Aligned_cols=27 Identities=4% Similarity=-0.263 Sum_probs=22.8
Q ss_pred hhccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 81 ELITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 81 ~l~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.-.|-||+.+++.|..-|.+|.+.+|.
T Consensus 11 GatGfIG~~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 11 GASGYIASWLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred CChHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 345889999999999999999887654
No 190
>PLN02858 fructose-bisphosphate aldolase
Probab=61.47 E-value=6.4 Score=34.70 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=23.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|.+|..+|+.|...|.+|.+|||++
T Consensus 333 G~MG~~mA~~L~~~G~~V~v~dr~~ 357 (1378)
T PLN02858 333 GAMGFGMASHLLKSNFSVCGYDVYK 357 (1378)
T ss_pred hHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 7899999999999999999999874
No 191
>PRK12742 oxidoreductase; Provisional
Probab=61.42 E-value=11 Score=25.52 Aligned_cols=24 Identities=4% Similarity=0.033 Sum_probs=20.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|.||+++++.+...|++|+...+
T Consensus 15 sggIG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 15 SRGIGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CChHHHHHHHHHHHCCCEEEEecC
Confidence 478999999999999999887643
No 192
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=61.40 E-value=11 Score=25.22 Aligned_cols=24 Identities=4% Similarity=-0.198 Sum_probs=21.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.+++.+...|.+|..++|.
T Consensus 38 G~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 38 GPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCC
Confidence 789999999999999999998875
No 193
>PRK08303 short chain dehydrogenase; Provisional
Probab=60.92 E-value=11 Score=27.29 Aligned_cols=24 Identities=4% Similarity=-0.194 Sum_probs=21.6
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
+.||+++|+.+...|++|+..+|.
T Consensus 18 ~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 18 RGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred chHHHHHHHHHHHCCCEEEEEecc
Confidence 569999999999999999988875
No 194
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.81 E-value=11 Score=26.59 Aligned_cols=23 Identities=9% Similarity=-0.067 Sum_probs=20.7
Q ss_pred chHHHHHHHHhhcCCEEEEEccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.||+++|+.|..-|.+|+..+|.
T Consensus 20 GIG~aiA~~la~~Ga~V~~~~r~ 42 (271)
T PRK06505 20 SIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred cHHHHHHHHHHhCCCEEEEecCc
Confidence 69999999999999999988763
No 195
>PRK06720 hypothetical protein; Provisional
Probab=60.80 E-value=10 Score=25.16 Aligned_cols=24 Identities=4% Similarity=-0.114 Sum_probs=21.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
+.||+++++.+..-|.+|+.+++.
T Consensus 26 ~GIG~aia~~l~~~G~~V~l~~r~ 49 (169)
T PRK06720 26 IGIGRNTALLLAKQGAKVIVTDID 49 (169)
T ss_pred ChHHHHHHHHHHHCCCEEEEEECC
Confidence 469999999999999999988864
No 196
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=60.77 E-value=12 Score=25.36 Aligned_cols=25 Identities=8% Similarity=-0.060 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+...|.+|+..+|.
T Consensus 15 sg~iG~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 15 ARGIGRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999998875
No 197
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.71 E-value=12 Score=26.11 Aligned_cols=23 Identities=9% Similarity=0.014 Sum_probs=20.5
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
+.||+++|+.+..-|.+|+..+|
T Consensus 19 ~GIG~aia~~la~~G~~v~~~~r 41 (257)
T PRK08594 19 RSIAWGIARSLHNAGAKLVFTYA 41 (257)
T ss_pred CCHHHHHHHHHHHCCCEEEEecC
Confidence 46999999999999999998765
No 198
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=60.70 E-value=9.9 Score=28.56 Aligned_cols=25 Identities=12% Similarity=-0.230 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.+|..+|+.++.-|.+|.+||+.
T Consensus 107 ~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 107 KGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred CChhhHHHHHHHHHCCCeEEEeCCC
Confidence 4889999999999999999999974
No 199
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=60.69 E-value=7.7 Score=28.03 Aligned_cols=26 Identities=8% Similarity=-0.068 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHhhcCC--EEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIM--QLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~--~V~~~~r~~ 108 (109)
.|.+|..+++.++..|. +|++|||..
T Consensus 14 ~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 14 IGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred eCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 48999999999997774 899999863
No 200
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=60.39 E-value=11 Score=27.98 Aligned_cols=25 Identities=12% Similarity=-0.113 Sum_probs=22.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|-||+.+++.|...|.+|++.+|.
T Consensus 30 tGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 30 GGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred ccHHHHHHHHHHHhCCCEEEEEEec
Confidence 3789999999999999999999864
No 201
>PRK09242 tropinone reductase; Provisional
Probab=60.17 E-value=11 Score=25.96 Aligned_cols=25 Identities=4% Similarity=-0.142 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++++...|.+|+..+|.
T Consensus 18 ~~gIG~~~a~~l~~~G~~v~~~~r~ 42 (257)
T PRK09242 18 SKGIGLAIAREFLGLGADVLIVARD 42 (257)
T ss_pred CchHHHHHHHHHHHcCCEEEEEeCC
Confidence 3689999999999999999988764
No 202
>PRK07791 short chain dehydrogenase; Provisional
Probab=59.97 E-value=12 Score=26.59 Aligned_cols=25 Identities=12% Similarity=-0.098 Sum_probs=21.7
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.+.||+++|+.+...|++|+..++.
T Consensus 15 s~GIG~aia~~la~~G~~vii~~~~ 39 (286)
T PRK07791 15 GGGIGRAHALAFAAEGARVVVNDIG 39 (286)
T ss_pred CchHHHHHHHHHHHCCCEEEEeeCC
Confidence 3579999999999999999988754
No 203
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=59.96 E-value=12 Score=28.50 Aligned_cols=23 Identities=4% Similarity=-0.093 Sum_probs=21.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|.++|+.+...|.+|+++++
T Consensus 211 G~~g~~~a~~~~~~Ga~V~~~~g 233 (390)
T TIGR00521 211 GKMGLALAEAAYKRGADVTLITG 233 (390)
T ss_pred chHHHHHHHHHHHCCCEEEEeCC
Confidence 88999999999999999998764
No 204
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=59.61 E-value=12 Score=25.35 Aligned_cols=25 Identities=4% Similarity=-0.056 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+|+.+..-|.+|+..+|.
T Consensus 11 s~~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 11 KRGIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred CchHHHHHHHHHHHcCCEEEEEeCC
Confidence 5789999999999889999998765
No 205
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=59.54 E-value=12 Score=25.72 Aligned_cols=26 Identities=0% Similarity=-0.142 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.||+.+++.|...|.+|+..+|..
T Consensus 16 sg~iG~~la~~l~~~G~~v~~~~r~~ 41 (262)
T PRK13394 16 ASGIGKEIALELARAGAAVAIADLNQ 41 (262)
T ss_pred CChHHHHHHHHHHHCCCeEEEEeCCh
Confidence 47899999999999999999887753
No 206
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.46 E-value=8.6 Score=27.54 Aligned_cols=26 Identities=0% Similarity=-0.172 Sum_probs=22.8
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.+|..+|..+..-|.+|..||+..
T Consensus 11 aG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 11 AGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 47899999999998899999999863
No 207
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.45 E-value=12 Score=25.74 Aligned_cols=24 Identities=8% Similarity=0.074 Sum_probs=21.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||..+++.+...|.+|+..+|.
T Consensus 17 ~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 17 NGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred CCHHHHHHHHHHHcCCcEEEEcCC
Confidence 469999999999999999998764
No 208
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.36 E-value=12 Score=25.49 Aligned_cols=23 Identities=4% Similarity=-0.119 Sum_probs=20.0
Q ss_pred ccchHHHHHHHHhhcCCEEEEEc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~ 105 (109)
.|.||+++++.+...|.+|+..+
T Consensus 14 s~gIG~~la~~l~~~G~~vv~~~ 36 (253)
T PRK08642 14 SRGLGAAIARAFAREGARVVVNY 36 (253)
T ss_pred CCcHHHHHHHHHHHCCCeEEEEc
Confidence 47899999999999999998654
No 209
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=59.28 E-value=9.5 Score=29.14 Aligned_cols=24 Identities=8% Similarity=-0.132 Sum_probs=21.6
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++++.+...|.+|+..+|.
T Consensus 188 gGIG~aLA~~La~~G~~Vi~l~r~ 211 (406)
T PRK07424 188 GTLGQALLKELHQQGAKVVALTSN 211 (406)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 569999999999999999988865
No 210
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.21 E-value=13 Score=25.93 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=20.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
+.||+++|+.+...|++|+..++
T Consensus 18 ~GIG~a~a~~l~~~G~~v~~~~~ 40 (261)
T PRK08690 18 RSIAYGIAKACREQGAELAFTYV 40 (261)
T ss_pred CcHHHHHHHHHHHCCCEEEEEcC
Confidence 46999999999999999987644
No 211
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.84 E-value=11 Score=29.13 Aligned_cols=25 Identities=12% Similarity=0.120 Sum_probs=22.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|..|..+|+.|+..|.+|.++|..
T Consensus 15 ~G~sG~s~a~~L~~~G~~v~~~D~~ 39 (498)
T PRK02006 15 LGESGLAMARWCARHGARLRVADTR 39 (498)
T ss_pred ecHhHHHHHHHHHHCCCEEEEEcCC
Confidence 3789999999999999999999953
No 212
>PRK07109 short chain dehydrogenase; Provisional
Probab=58.82 E-value=9 Score=28.02 Aligned_cols=25 Identities=4% Similarity=-0.149 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+...|.+|+..+|.
T Consensus 17 s~gIG~~la~~la~~G~~Vvl~~R~ 41 (334)
T PRK07109 17 SAGVGRATARAFARRGAKVVLLARG 41 (334)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3679999999999999999998875
No 213
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=58.53 E-value=8.5 Score=29.34 Aligned_cols=25 Identities=4% Similarity=-0.098 Sum_probs=22.4
Q ss_pred cchHHHHHHHHhhcC-CEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASI-MQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg-~~V~~~~r~~ 108 (109)
|.+|+.+++.+...| .+|+.++|..
T Consensus 189 G~iG~~~a~~L~~~G~~~V~v~~rs~ 214 (417)
T TIGR01035 189 GEMGELVAKHLLRKGVGKILIANRTY 214 (417)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 789999999999999 6899999863
No 214
>KOG1207|consensus
Probab=58.44 E-value=11 Score=26.09 Aligned_cols=24 Identities=4% Similarity=-0.144 Sum_probs=22.1
Q ss_pred chHHHHHHHHhhcCCEEEEEcccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.||+++...|..-|.+|+++.|..
T Consensus 18 GIG~~~v~~La~aGA~ViAvaR~~ 41 (245)
T KOG1207|consen 18 GIGKEIVLSLAKAGAQVIAVARNE 41 (245)
T ss_pred cccHHHHHHHHhcCCEEEEEecCH
Confidence 599999999999999999998864
No 215
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.39 E-value=14 Score=26.08 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=20.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
+.||+++|+.+...|++|+...|
T Consensus 22 ~GIG~aia~~la~~G~~V~l~~r 44 (272)
T PRK08159 22 RSIAWGIAKACRAAGAELAFTYQ 44 (272)
T ss_pred CcHHHHHHHHHHHCCCEEEEEcC
Confidence 35999999999999999987654
No 216
>PRK05854 short chain dehydrogenase; Provisional
Probab=58.37 E-value=10 Score=27.40 Aligned_cols=24 Identities=8% Similarity=0.003 Sum_probs=21.7
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
+.||+++|+.|..-|++|+..+|.
T Consensus 24 ~GIG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 24 DGLGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCC
Confidence 579999999999999999988775
No 217
>KOG1370|consensus
Probab=58.28 E-value=9.4 Score=28.68 Aligned_cols=21 Identities=5% Similarity=-0.053 Sum_probs=19.5
Q ss_pred cchHHHHHHHHhhcCCEEEEE
Q psy15800 84 TQSDTNHTQRCLASIMQLVYS 104 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~ 104 (109)
|.+|+..|+.|++||++|+..
T Consensus 223 GdVGKgCaqaLkg~g~~VivT 243 (434)
T KOG1370|consen 223 GDVGKGCAQALKGFGARVIVT 243 (434)
T ss_pred CccchhHHHHHhhcCcEEEEe
Confidence 689999999999999999875
No 218
>PRK12747 short chain dehydrogenase; Provisional
Probab=58.19 E-value=13 Score=25.52 Aligned_cols=23 Identities=4% Similarity=-0.153 Sum_probs=20.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~ 105 (109)
.|.||+++++.+..-|++|+..+
T Consensus 13 s~gIG~~ia~~l~~~G~~v~~~~ 35 (252)
T PRK12747 13 SRGIGRAIAKRLANDGALVAIHY 35 (252)
T ss_pred CChHHHHHHHHHHHCCCeEEEEc
Confidence 47899999999999999998764
No 219
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=58.07 E-value=12 Score=28.72 Aligned_cols=24 Identities=8% Similarity=-0.175 Sum_probs=22.1
Q ss_pred cchHHH-HHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTN-HTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~-va~~~~~fg~~V~~~~r~ 107 (109)
|..|.. +|+.|+..|.+|.++|..
T Consensus 16 G~sG~s~~a~~L~~~G~~V~~~D~~ 40 (461)
T PRK00421 16 GGIGMSGLAEVLLNLGYKVSGSDLK 40 (461)
T ss_pred chhhHHHHHHHHHhCCCeEEEECCC
Confidence 789999 799999999999999964
No 220
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=57.95 E-value=13 Score=25.69 Aligned_cols=24 Identities=13% Similarity=-0.076 Sum_probs=20.9
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|.||+++++.+...|++|+...|
T Consensus 16 ~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 16 STGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeC
Confidence 368999999999999999887655
No 221
>PRK06484 short chain dehydrogenase; Validated
Probab=57.91 E-value=10 Score=29.14 Aligned_cols=24 Identities=17% Similarity=-0.038 Sum_probs=21.7
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
+.||+++|+.+...|++|+..+|.
T Consensus 15 ~gIG~aia~~l~~~G~~V~~~~r~ 38 (520)
T PRK06484 15 GGIGRAACQRFARAGDQVVVADRN 38 (520)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 579999999999999999998774
No 222
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=57.80 E-value=13 Score=26.69 Aligned_cols=25 Identities=4% Similarity=-0.283 Sum_probs=21.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|-||+.+++.|..-|.+|+..+|.
T Consensus 14 ~G~IG~~l~~~L~~~G~~V~~~~r~ 38 (325)
T PLN02989 14 SGYIASWIVKLLLFRGYTINATVRD 38 (325)
T ss_pred chHHHHHHHHHHHHCCCEEEEEEcC
Confidence 4789999999999999999876543
No 223
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=57.77 E-value=13 Score=25.29 Aligned_cols=25 Identities=0% Similarity=-0.229 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.+...|.+|+..++.
T Consensus 17 s~~iG~~la~~l~~~G~~v~~~~~~ 41 (252)
T PRK08220 17 AQGIGYAVALAFVEAGAKVIGFDQA 41 (252)
T ss_pred CchHHHHHHHHHHHCCCEEEEEecc
Confidence 3689999999999999999998864
No 224
>PLN02572 UDP-sulfoquinovose synthase
Probab=57.75 E-value=12 Score=28.74 Aligned_cols=23 Identities=0% Similarity=-0.227 Sum_probs=21.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|-||+.+++.|..-|.+|+++|+
T Consensus 57 GfIGs~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 57 GYCGWATALHLSKRGYEVAIVDN 79 (442)
T ss_pred cHHHHHHHHHHHHCCCeEEEEec
Confidence 78999999999999999999874
No 225
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.64 E-value=13 Score=25.51 Aligned_cols=24 Identities=4% Similarity=-0.141 Sum_probs=20.7
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|.||+++|+.+...|.+|+..++
T Consensus 16 s~gIG~~~a~~l~~~G~~v~~~~~ 39 (255)
T PRK06463 16 TRGIGRAIAEAFLREGAKVAVLYN 39 (255)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeC
Confidence 368999999999999999987654
No 226
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=57.60 E-value=13 Score=25.79 Aligned_cols=23 Identities=4% Similarity=-0.041 Sum_probs=20.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
+.||+++|+.+...|++|+...+
T Consensus 18 ~gIG~~ia~~l~~~G~~v~~~~~ 40 (260)
T PRK08416 18 RGIGKAIVYEFAQSGVNIAFTYN 40 (260)
T ss_pred chHHHHHHHHHHHCCCEEEEEcC
Confidence 67999999999999999987643
No 227
>PRK06482 short chain dehydrogenase; Provisional
Probab=57.39 E-value=10 Score=26.42 Aligned_cols=25 Identities=16% Similarity=-0.002 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.|..-|.+|+..+|.
T Consensus 11 sg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 11 SSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999999999999988764
No 228
>PRK07985 oxidoreductase; Provisional
Probab=57.29 E-value=15 Score=26.16 Aligned_cols=23 Identities=4% Similarity=-0.153 Sum_probs=20.7
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.||+++|+.|...|.+|+..++
T Consensus 59 ~gIG~aia~~L~~~G~~Vi~~~~ 81 (294)
T PRK07985 59 SGIGRAAAIAYAREGADVAISYL 81 (294)
T ss_pred CcHHHHHHHHHHHCCCEEEEecC
Confidence 68999999999999999988764
No 229
>PRK14031 glutamate dehydrogenase; Provisional
Probab=57.03 E-value=13 Score=28.89 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=20.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|++|...|+.|..+|++|++++.
T Consensus 237 GNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 237 GNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CHHHHHHHHHHHHCCCEEEEEEC
Confidence 79999999999999999998554
No 230
>PRK12827 short chain dehydrogenase; Provisional
Probab=56.63 E-value=15 Score=24.80 Aligned_cols=24 Identities=8% Similarity=-0.112 Sum_probs=21.0
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|.||+.+|+.+...|.+|+..++
T Consensus 15 sg~iG~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 15 SGGLGRAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CChHHHHHHHHHHHCCCeEEEEcC
Confidence 478999999999999999988664
No 231
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=56.45 E-value=11 Score=28.70 Aligned_cols=26 Identities=4% Similarity=-0.100 Sum_probs=23.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.+|..+|..|...|.+|++||+..
T Consensus 11 lG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 11 LGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 48899999999999999999999864
No 232
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.43 E-value=13 Score=28.92 Aligned_cols=24 Identities=0% Similarity=-0.341 Sum_probs=22.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|...++.|+..|.+|+++|..
T Consensus 21 G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 21 GVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCC
Confidence 899999999999999999999953
No 233
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=56.07 E-value=15 Score=26.46 Aligned_cols=25 Identities=0% Similarity=-0.132 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||.++++.|..-|.+|+..+|.
T Consensus 15 s~gIG~~~a~~L~~~G~~V~~~~r~ 39 (322)
T PRK07453 15 SSGVGLYAAKALAKRGWHVIMACRN 39 (322)
T ss_pred CChHHHHHHHHHHHCCCEEEEEECC
Confidence 4689999999999999999998874
No 234
>PLN00016 RNA-binding protein; Provisional
Probab=55.97 E-value=13 Score=27.47 Aligned_cols=26 Identities=4% Similarity=-0.201 Sum_probs=22.9
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.||+.+++.|..-|.+|++.+|..
T Consensus 65 tG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 65 HAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 47899999999999999999998753
No 235
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=55.93 E-value=9.2 Score=30.12 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=22.8
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|++|+.+++.++..|.+|+..|+.+
T Consensus 426 G~~G~~la~~L~~~g~~vvvId~d~ 450 (558)
T PRK10669 426 GRVGSLLGEKLLAAGIPLVVIETSR 450 (558)
T ss_pred ChHHHHHHHHHHHCCCCEEEEECCH
Confidence 7999999999999999999998753
No 236
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.72 E-value=13 Score=25.11 Aligned_cols=25 Identities=4% Similarity=-0.153 Sum_probs=21.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEE-ccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYS-TCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~-~r~ 107 (109)
.|.||+.+++.+..-|.+|+.. +|.
T Consensus 14 sg~iG~~la~~l~~~g~~v~~~~~r~ 39 (247)
T PRK05565 14 SGGIGRAIAELLAKEGAKVVIAYDIN 39 (247)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4789999999999899999887 764
No 237
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.38 E-value=17 Score=25.18 Aligned_cols=21 Identities=0% Similarity=-0.021 Sum_probs=19.1
Q ss_pred chHHHHHHHHhhcCCEEEEEc
Q psy15800 85 QSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~ 105 (109)
.||+++|+.+...|++|+..+
T Consensus 19 giG~~~a~~l~~~G~~vi~~~ 39 (256)
T PRK12859 19 GIGAAICKELAEAGADIFFTY 39 (256)
T ss_pred ChHHHHHHHHHHCCCeEEEEe
Confidence 699999999999999998864
No 238
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=55.31 E-value=15 Score=26.63 Aligned_cols=26 Identities=4% Similarity=-0.045 Sum_probs=23.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.+.||+++|+.+..-|++|+.+.|..
T Consensus 15 SsGIG~~~A~~lA~~g~~liLvaR~~ 40 (265)
T COG0300 15 SSGIGAELAKQLARRGYNLILVARRE 40 (265)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCcH
Confidence 36799999999999999999988864
No 239
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.24 E-value=16 Score=25.46 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=19.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
+.||+++|+++...|++|+..++
T Consensus 18 ~GIG~a~a~~l~~~G~~v~~~~~ 40 (260)
T PRK06997 18 RSIAYGIAKACKREGAELAFTYV 40 (260)
T ss_pred CcHHHHHHHHHHHCCCeEEEEcc
Confidence 46999999999999999987643
No 240
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.21 E-value=13 Score=28.65 Aligned_cols=24 Identities=8% Similarity=-0.180 Sum_probs=22.4
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|..|+++|+.|...|.+|.++|+.
T Consensus 24 G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 24 GVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCC
Confidence 789999999999999999999964
No 241
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=55.15 E-value=8.1 Score=26.52 Aligned_cols=59 Identities=5% Similarity=-0.123 Sum_probs=38.4
Q ss_pred CCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhccchHHHHHHHH--hhcCCEEEEE-cc
Q psy15800 39 PVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQSDTNHTQRC--LASIMQLVYS-TC 106 (109)
Q Consensus 39 g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~G~IG~~va~~~--~~fg~~V~~~-~r 106 (109)
+....+.+||.+..++...|++..... .| ...---.|.+|+.+++.+ ...|++++++ |+
T Consensus 57 ~~~G~~~~gy~v~~l~~~~~~~l~~~~-----~~----rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~ 118 (213)
T PRK05472 57 GEFGKRGVGYNVEELLEFIEKILGLDR-----TW----NVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV 118 (213)
T ss_pred HhcCCCCCCeeHHHHHHHHHHHhCCCC-----Cc----EEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC
Confidence 345577788999999998888873331 12 111111378999999863 3678998864 54
No 242
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=55.08 E-value=12 Score=26.58 Aligned_cols=25 Identities=4% Similarity=-0.091 Sum_probs=22.4
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|.+|+.++..+...|.+|..++|..
T Consensus 126 Gg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 126 GGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6799999999999999999999863
No 243
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.94 E-value=16 Score=26.18 Aligned_cols=24 Identities=4% Similarity=-0.168 Sum_probs=21.4
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++|+.|..-|.+|+..++.
T Consensus 22 ~gIG~~ia~~L~~~Ga~Vv~~~~~ 45 (306)
T PRK07792 22 AGLGRAEALGLARLGATVVVNDVA 45 (306)
T ss_pred ChHHHHHHHHHHHCCCEEEEecCC
Confidence 579999999999999999988763
No 244
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=54.68 E-value=11 Score=29.38 Aligned_cols=24 Identities=4% Similarity=-0.140 Sum_probs=22.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.++..+...|++|..++|.
T Consensus 341 GgiG~aia~~L~~~G~~V~i~~R~ 364 (477)
T PRK09310 341 GGAAKAIATTLARAGAELLIFNRT 364 (477)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 679999999999999999999875
No 245
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=54.54 E-value=14 Score=26.61 Aligned_cols=25 Identities=12% Similarity=-0.181 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.+|+.+++.++++|.+|++.++.
T Consensus 172 ~g~iG~~~~~~a~~~G~~vi~~~~~ 196 (333)
T cd08296 172 IGGLGHLAVQYAAKMGFRTVAISRG 196 (333)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4889999999999999999988764
No 246
>PLN02583 cinnamoyl-CoA reductase
Probab=54.41 E-value=16 Score=26.11 Aligned_cols=24 Identities=8% Similarity=-0.164 Sum_probs=21.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|.||+.+++.|..-|.+|.+.+|
T Consensus 15 tG~IG~~lv~~Ll~~G~~V~~~~R 38 (297)
T PLN02583 15 SGYVGFWLVKRLLSRGYTVHAAVQ 38 (297)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEc
Confidence 478999999999999999998776
No 247
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.37 E-value=14 Score=28.20 Aligned_cols=24 Identities=8% Similarity=-0.078 Sum_probs=22.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|..+|+.|+..|.+|.++|..
T Consensus 18 G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 18 GGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred cHhHHHHHHHHHHCCCEEEEECCC
Confidence 789999999999999999999964
No 248
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=54.29 E-value=14 Score=26.18 Aligned_cols=23 Identities=13% Similarity=-0.136 Sum_probs=20.8
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|+.+++.++++|++|++.+.
T Consensus 157 g~vg~~~~~~A~~~G~~vi~~~~ 179 (324)
T cd08288 157 GGVGSVAVALLARLGYEVVASTG 179 (324)
T ss_pred cHHHHHHHHHHHHCCCeEEEEeC
Confidence 78999999999999999988754
No 249
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=54.26 E-value=13 Score=29.35 Aligned_cols=25 Identities=0% Similarity=-0.348 Sum_probs=22.8
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|.+|...+..++.+|++|+++|+..
T Consensus 174 G~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 174 GVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6899999999999999999999763
No 250
>PLN02477 glutamate dehydrogenase
Probab=53.95 E-value=15 Score=28.19 Aligned_cols=22 Identities=9% Similarity=-0.126 Sum_probs=20.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEE
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYS 104 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~ 104 (109)
+|++|+.+|+.|...|++|+++
T Consensus 214 fGnVG~~~A~~L~e~GakVVaV 235 (410)
T PLN02477 214 FGNVGSWAAQLIHEKGGKIVAV 235 (410)
T ss_pred CCHHHHHHHHHHHHcCCEEEEE
Confidence 4899999999999999999965
No 251
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.89 E-value=17 Score=25.33 Aligned_cols=23 Identities=9% Similarity=-0.140 Sum_probs=20.0
Q ss_pred chHHHHHHHHhhcCCEEEEEccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.||+++|+.+...|++|+..+|.
T Consensus 21 GIG~a~a~~la~~G~~v~~~~r~ 43 (260)
T PRK06603 21 SISWAIAQLAKKHGAELWFTYQS 43 (260)
T ss_pred chHHHHHHHHHHcCCEEEEEeCc
Confidence 49999999999999999887653
No 252
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=53.86 E-value=11 Score=28.76 Aligned_cols=25 Identities=0% Similarity=-0.142 Sum_probs=22.3
Q ss_pred cchHHHHHHHHhhcCC-EEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~~ 108 (109)
|.+|+.+++.+...|+ +|+.++|..
T Consensus 191 G~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 191 GEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred hHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 7899999999999998 799999863
No 253
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=53.84 E-value=9.9 Score=18.18 Aligned_cols=14 Identities=0% Similarity=-0.206 Sum_probs=11.5
Q ss_pred chHHHHHHHHhhcC
Q psy15800 85 QSDTNHTQRCLASI 98 (109)
Q Consensus 85 ~IG~~va~~~~~fg 98 (109)
.||+.++++|+.+|
T Consensus 18 GIG~kt~~kL~~~G 31 (32)
T PF11798_consen 18 GIGKKTAKKLNKLG 31 (32)
T ss_dssp TS-HHHHHHHHCTT
T ss_pred CccHHHHHHHHHcc
Confidence 58999999999887
No 254
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.62 E-value=18 Score=25.40 Aligned_cols=23 Identities=9% Similarity=-0.064 Sum_probs=20.4
Q ss_pred chHHHHHHHHhhcCCEEEEEccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.||+++|+.+..-|.+|+..+|.
T Consensus 19 GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 19 SIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred cHHHHHHHHHHHCCCEEEEEecc
Confidence 69999999999999999887653
No 255
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=53.49 E-value=20 Score=24.94 Aligned_cols=22 Identities=14% Similarity=-0.094 Sum_probs=19.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~ 105 (109)
+.||+++|+.+...|++|+...
T Consensus 18 ~GIG~aia~~la~~G~~v~~~~ 39 (258)
T PRK07370 18 RSIAWGIAQQLHAAGAELGITY 39 (258)
T ss_pred CchHHHHHHHHHHCCCEEEEEe
Confidence 4699999999999999987653
No 256
>PRK07775 short chain dehydrogenase; Provisional
Probab=53.48 E-value=18 Score=25.39 Aligned_cols=25 Identities=4% Similarity=-0.094 Sum_probs=21.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.|..-|++|+..+|.
T Consensus 19 ~g~iG~~la~~L~~~G~~V~~~~r~ 43 (274)
T PRK07775 19 SSGIGAATAIELAAAGFPVALGARR 43 (274)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3689999999999999999887753
No 257
>PRK08263 short chain dehydrogenase; Provisional
Probab=53.38 E-value=14 Score=25.86 Aligned_cols=26 Identities=12% Similarity=-0.077 Sum_probs=22.5
Q ss_pred hccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 82 LITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 82 l~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
-.|.||+.+++.+..-|.+|+..+|.
T Consensus 11 asg~iG~~~a~~l~~~g~~V~~~~r~ 36 (275)
T PRK08263 11 ASRGFGRAWTEAALERGDRVVATARD 36 (275)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEECC
Confidence 35789999999999899999988775
No 258
>PLN02650 dihydroflavonol-4-reductase
Probab=53.10 E-value=16 Score=26.66 Aligned_cols=27 Identities=7% Similarity=-0.216 Sum_probs=22.5
Q ss_pred hhccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 81 ELITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 81 ~l~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.-.|-||+.+++.|..-|.+|++.+|.
T Consensus 12 GatGfIGs~l~~~L~~~G~~V~~~~r~ 38 (351)
T PLN02650 12 GASGFIGSWLVMRLLERGYTVRATVRD 38 (351)
T ss_pred CCcHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 335789999999999999999887654
No 259
>PRK06701 short chain dehydrogenase; Provisional
Probab=53.02 E-value=18 Score=25.74 Aligned_cols=24 Identities=0% Similarity=-0.251 Sum_probs=21.4
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||..+++.+...|.+|+.+++.
T Consensus 56 ggIG~~la~~l~~~G~~V~l~~r~ 79 (290)
T PRK06701 56 SGIGRAVAVLFAKEGADIAIVYLD 79 (290)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 679999999999999999988764
No 260
>PRK05855 short chain dehydrogenase; Validated
Probab=52.95 E-value=16 Score=28.16 Aligned_cols=24 Identities=8% Similarity=-0.094 Sum_probs=22.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++++.|..-|++|+..+|.
T Consensus 325 ~giG~~~a~~l~~~G~~v~~~~r~ 348 (582)
T PRK05855 325 SGIGRETALAFAREGAEVVASDID 348 (582)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 679999999999999999998875
No 261
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=52.89 E-value=13 Score=26.82 Aligned_cols=24 Identities=13% Similarity=-0.240 Sum_probs=21.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+..++.++.+|++|++.++.
T Consensus 162 G~vG~~aiqlAk~~G~~Vi~~~~~ 185 (338)
T cd08295 162 GAVGQLVGQLAKLKGCYVVGSAGS 185 (338)
T ss_pred cHHHHHHHHHHHHcCCEEEEEeCC
Confidence 789999999999999999887653
No 262
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=52.55 E-value=16 Score=27.99 Aligned_cols=24 Identities=0% Similarity=0.015 Sum_probs=21.8
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|-||+.+++.|..-|.+|+++|+.
T Consensus 130 GFIGs~Lv~~Ll~~G~~V~~ldr~ 153 (436)
T PLN02166 130 GFVGSHLVDKLIGRGDEVIVIDNF 153 (436)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 789999999999999999999863
No 263
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.25 E-value=18 Score=27.57 Aligned_cols=24 Identities=0% Similarity=-0.208 Sum_probs=22.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|..+|+.|...|.+|.++|..
T Consensus 14 g~~G~~~a~~l~~~g~~v~~~d~~ 37 (445)
T PRK04308 14 GGTGISMIAYLRKNGAEVAAYDAE 37 (445)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 689999999999999999999864
No 264
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=52.18 E-value=13 Score=28.12 Aligned_cols=25 Identities=0% Similarity=-0.318 Sum_probs=22.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|++|+.+++.|...|.+|+.+|+.+
T Consensus 240 G~~g~~l~~~L~~~~~~v~vid~~~ 264 (453)
T PRK09496 240 GNIGYYLAKLLEKEGYSVKLIERDP 264 (453)
T ss_pred CHHHHHHHHHHHhCCCeEEEEECCH
Confidence 7899999999999999999997653
No 265
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=52.14 E-value=19 Score=23.66 Aligned_cols=24 Identities=0% Similarity=-0.242 Sum_probs=21.7
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|++|...++.|...|.+|..++|.
T Consensus 22 G~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 22 GKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CHHHHHHHHHHHhCCCEEEEEcCc
Confidence 789999999999999999988764
No 266
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=51.75 E-value=15 Score=26.01 Aligned_cols=22 Identities=5% Similarity=-0.088 Sum_probs=20.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEE
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYS 104 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~ 104 (109)
.|++|+.+|+.|...|++|++.
T Consensus 40 fG~VG~~~a~~l~~~Ga~vv~v 61 (244)
T PF00208_consen 40 FGNVGSHAARFLAELGAKVVAV 61 (244)
T ss_dssp SSHHHHHHHHHHHHTTEEEEEE
T ss_pred CCHHHHHHHHHHHHcCCEEEEE
Confidence 3899999999999999999887
No 267
>PRK12743 oxidoreductase; Provisional
Probab=51.54 E-value=20 Score=24.72 Aligned_cols=23 Identities=0% Similarity=-0.252 Sum_probs=19.9
Q ss_pred ccchHHHHHHHHhhcCCEEEEEc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~ 105 (109)
.|.||+++++.+...|.+|+...
T Consensus 11 s~giG~~~a~~l~~~G~~V~~~~ 33 (256)
T PRK12743 11 DSGIGKACALLLAQQGFDIGITW 33 (256)
T ss_pred CchHHHHHHHHHHHCCCEEEEEe
Confidence 46799999999999999998764
No 268
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=51.25 E-value=16 Score=26.09 Aligned_cols=24 Identities=17% Similarity=-0.173 Sum_probs=21.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.+++.++.+|.+|+..++.
T Consensus 172 g~iG~~~~~~a~~~G~~v~~~~~~ 195 (330)
T cd08245 172 GGLGHLAVQYARAMGFETVAITRS 195 (330)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 569999999999999999988764
No 269
>PRK14982 acyl-ACP reductase; Provisional
Probab=51.12 E-value=31 Score=25.86 Aligned_cols=24 Identities=4% Similarity=-0.100 Sum_probs=20.1
Q ss_pred cchHHHHHHHHh-hcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCL-ASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~-~fg~-~V~~~~r~ 107 (109)
|.||+.+++.+. ..|. +++.++|.
T Consensus 165 G~IGs~lar~L~~~~gv~~lilv~R~ 190 (340)
T PRK14982 165 GDIGSAVCRWLDAKTGVAELLLVARQ 190 (340)
T ss_pred hHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence 799999999996 4674 88888875
No 270
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=51.05 E-value=18 Score=27.13 Aligned_cols=25 Identities=12% Similarity=-0.136 Sum_probs=22.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|-.|.-..+.++++|++|+++|+..
T Consensus 176 GGlGh~avQ~Aka~ga~Via~~~~~ 200 (339)
T COG1064 176 GGLGHMAVQYAKAMGAEVIAITRSE 200 (339)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 6788889999999999999999864
No 271
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=50.93 E-value=20 Score=22.58 Aligned_cols=24 Identities=13% Similarity=-0.090 Sum_probs=21.5
Q ss_pred chHHHHHHHHhhcCCEEEEEcccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.+|..+|+++...|...+.+||..
T Consensus 75 ~vG~lla~ra~~~gi~~v~fdr~~ 98 (119)
T PF00861_consen 75 LVGELLAKRALEKGIAKVVFDRGG 98 (119)
T ss_dssp HHHHHHHHHHHHTTSSEEEECTST
T ss_pred HHHHHHHHHHHHcCCcEEEEcCCC
Confidence 489999999999999999999753
No 272
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=50.92 E-value=87 Score=23.80 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=24.9
Q ss_pred CCCCceEEEecCccCCcc---cHHHHh-----hcC---cEEEecCCCCccc
Q psy15800 5 AGENLKVISTFSVGHDHL---HLDQIK-----SRG---IRVGTVGPVSSDA 44 (109)
Q Consensus 5 ~~p~Lk~i~~~~~G~d~i---d~~~~~-----~~g---i~v~n~~g~~~~~ 44 (109)
.+|+.|+|...++-+..+ |++... +.+ |..+++||+....
T Consensus 85 ~~p~p~~i~V~~tc~~~liGdDi~~v~~~~~~~~~~~~vi~v~tpgf~g~~ 135 (415)
T cd01977 85 EFPDIKRMTVYTTCTTALIGDDIKAVAKEVMEELPDVDIFVCNAPGFAGPS 135 (415)
T ss_pred hCCCCcEEEEECCCchhhhcCCHHHHHHHHHHhcCCCeEEEEeCCCcCCcc
Confidence 357778877777666543 554432 334 6667889987643
No 273
>PLN02240 UDP-glucose 4-epimerase
Probab=50.73 E-value=21 Score=25.83 Aligned_cols=24 Identities=8% Similarity=-0.043 Sum_probs=21.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|.||+.+++.|..-|.+|++.++
T Consensus 14 tG~iG~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 14 AGYIGSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeC
Confidence 478999999999988999999875
No 274
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=50.53 E-value=16 Score=29.74 Aligned_cols=26 Identities=4% Similarity=-0.139 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHhhcC--CEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASI--MQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg--~~V~~~~r~~ 108 (109)
.|.+|..+++.++..| .+|++|||..
T Consensus 11 ~G~mG~ala~~l~~~G~~~~V~~~d~~~ 38 (735)
T PRK14806 11 LGLIGGSFAKALRERGLAREVVAVDRRA 38 (735)
T ss_pred eCHHHHHHHHHHHhcCCCCEEEEEECCh
Confidence 5899999999999887 5899999864
No 275
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=50.32 E-value=18 Score=26.30 Aligned_cols=24 Identities=21% Similarity=-0.094 Sum_probs=21.4
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|...++.++..|++|++.++.
T Consensus 175 g~iG~~a~~~a~~~G~~vi~~~~~ 198 (329)
T TIGR02822 175 GGSAHLTAQVALAQGATVHVMTRG 198 (329)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 789999999999999999988764
No 276
>PRK04148 hypothetical protein; Provisional
Probab=50.24 E-value=19 Score=23.28 Aligned_cols=24 Identities=4% Similarity=-0.112 Sum_probs=20.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
| -|..+|..|+..|.+|++.|..+
T Consensus 26 G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 26 G-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred c-CCHHHHHHHHHCCCEEEEEECCH
Confidence 6 78889999999999999999653
No 277
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=50.15 E-value=16 Score=26.01 Aligned_cols=23 Identities=4% Similarity=-0.187 Sum_probs=20.7
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|+..++.++.+|++|++.++
T Consensus 154 g~vG~~aiqlA~~~G~~vi~~~~ 176 (329)
T cd08294 154 GAVGSLVGQIAKIKGCKVIGCAG 176 (329)
T ss_pred cHHHHHHHHHHHHcCCEEEEEeC
Confidence 78999999999999999988764
No 278
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=50.08 E-value=21 Score=21.62 Aligned_cols=23 Identities=13% Similarity=-0.077 Sum_probs=20.8
Q ss_pred chHHHHHHHHhhcCCEEEEEccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.||..+|+++...|..-+++|+-
T Consensus 61 ~vG~~la~r~~~~gi~~vv~D~~ 83 (103)
T cd00432 61 LVGRLLAKRALEKGIKKVVFDRG 83 (103)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCC
Confidence 68999999999999998888874
No 279
>PRK12744 short chain dehydrogenase; Provisional
Probab=49.98 E-value=22 Score=24.44 Aligned_cols=23 Identities=9% Similarity=-0.177 Sum_probs=19.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~ 105 (109)
.|.||+++|+.+...|.+|+..+
T Consensus 17 ~~gIG~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 17 AKNLGGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred CchHHHHHHHHHHHCCCcEEEEe
Confidence 46899999999999999966654
No 280
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=49.96 E-value=21 Score=24.30 Aligned_cols=23 Identities=9% Similarity=-0.117 Sum_probs=19.9
Q ss_pred ccchHHHHHHHHhhcCCEEEEEc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~ 105 (109)
.|.||+.+|+.+...|.+|+...
T Consensus 15 s~~iG~~la~~l~~~g~~v~~~~ 37 (247)
T PRK12935 15 AKGIGKAITVALAQEGAKVVINY 37 (247)
T ss_pred CCHHHHHHHHHHHHcCCEEEEEc
Confidence 47899999999999999998653
No 281
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=49.94 E-value=14 Score=28.96 Aligned_cols=25 Identities=4% Similarity=-0.104 Sum_probs=23.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|..|..+|..+..-|.+|..||+..
T Consensus 16 G~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 16 GAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 7899999999998899999999864
No 282
>PRK06484 short chain dehydrogenase; Validated
Probab=49.65 E-value=16 Score=28.17 Aligned_cols=24 Identities=13% Similarity=-0.072 Sum_probs=21.7
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++|+.+...|.+|+..+|.
T Consensus 279 ~gIG~~~a~~l~~~G~~V~~~~r~ 302 (520)
T PRK06484 279 RGIGRAVADRFAAAGDRLLIIDRD 302 (520)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 469999999999999999998874
No 283
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=49.65 E-value=19 Score=26.32 Aligned_cols=25 Identities=4% Similarity=-0.258 Sum_probs=21.7
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|-||+.+++.|..-|.+|++.+|.
T Consensus 19 ~GfIG~~l~~~L~~~G~~V~~~~r~ 43 (353)
T PLN02896 19 TGYIGSWLVKLLLQRGYTVHATLRD 43 (353)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3789999999999999999987653
No 284
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=49.63 E-value=19 Score=28.51 Aligned_cols=25 Identities=0% Similarity=-0.330 Sum_probs=22.8
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|.+|...++.++.+|++|+++|+..
T Consensus 173 G~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 173 GVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 7899999999999999999998753
No 285
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=49.42 E-value=18 Score=25.63 Aligned_cols=24 Identities=13% Similarity=-0.165 Sum_probs=21.4
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|..+++.++..|++|+..++.
T Consensus 157 g~vg~~~~~~a~~~g~~v~~~~~~ 180 (326)
T cd08289 157 GGVGSLAVSILAKLGYEVVASTGK 180 (326)
T ss_pred chHHHHHHHHHHHCCCeEEEEecC
Confidence 789999999999999999887653
No 286
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.37 E-value=16 Score=24.81 Aligned_cols=22 Identities=5% Similarity=-0.148 Sum_probs=19.3
Q ss_pred hccchHHHHHHHHhhcCCEEEE
Q psy15800 82 LITQSDTNHTQRCLASIMQLVY 103 (109)
Q Consensus 82 l~G~IG~~va~~~~~fg~~V~~ 103 (109)
-.|.||+++++.+...|.+|+.
T Consensus 12 a~g~iG~~~a~~l~~~g~~v~~ 33 (250)
T PRK08063 12 SSRGIGKAIALRLAEEGYDIAV 33 (250)
T ss_pred CCchHHHHHHHHHHHCCCEEEE
Confidence 3588999999999999999875
No 287
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=49.37 E-value=22 Score=25.25 Aligned_cols=23 Identities=9% Similarity=-0.075 Sum_probs=21.2
Q ss_pred chHHHHHHHHhhcCCEEEEEccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.||.++|+++..+|=+|+...|.
T Consensus 16 GIGl~lak~f~elgN~VIi~gR~ 38 (245)
T COG3967 16 GIGLALAKRFLELGNTVIICGRN 38 (245)
T ss_pred hhhHHHHHHHHHhCCEEEEecCc
Confidence 59999999999999999998875
No 288
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=49.24 E-value=16 Score=27.38 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=15.7
Q ss_pred hHHHHHHHHhhcCCEEEE
Q psy15800 86 SDTNHTQRCLASIMQLVY 103 (109)
Q Consensus 86 IG~~va~~~~~fg~~V~~ 103 (109)
--.++|+|++.+||+|+.
T Consensus 105 k~ieiakRAk~~GmKVl~ 122 (403)
T COG3867 105 KAIEIAKRAKNLGMKVLL 122 (403)
T ss_pred HHHHHHHHHHhcCcEEEe
Confidence 466899999999999985
No 289
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=49.17 E-value=20 Score=21.63 Aligned_cols=24 Identities=4% Similarity=-0.090 Sum_probs=22.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|..-++.|...|++|+.++|.
T Consensus 16 G~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 16 GPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp SHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CHHHHHHHHHHHhCCCEEEEECCc
Confidence 789999999999999999999875
No 290
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=49.17 E-value=23 Score=23.83 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=20.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|.||+.+++.+..-|.+|+...+
T Consensus 14 sg~iG~~l~~~l~~~G~~v~~~~~ 37 (248)
T PRK05557 14 SRGIGRAIAERLAAQGANVVINYA 37 (248)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeC
Confidence 478999999999988999866554
No 291
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=49.09 E-value=14 Score=28.95 Aligned_cols=26 Identities=8% Similarity=-0.079 Sum_probs=23.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|..|..+|..+..-|.+|..||+..
T Consensus 13 aG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 13 AGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 37899999999999999999999864
No 292
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=49.07 E-value=20 Score=27.68 Aligned_cols=24 Identities=4% Similarity=-0.126 Sum_probs=21.7
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|+.|+..|+.+...|.+|+++|-.
T Consensus 216 GNVg~~aa~~l~~~GAkvva~sds 239 (411)
T COG0334 216 GNVGQYAAEKLHELGAKVVAVSDS 239 (411)
T ss_pred cHHHHHHHHHHHHcCCEEEEEEcC
Confidence 799999999999999999998753
No 293
>PF11430 EGL-1: Programmed cell death activator EGL-1; InterPro: IPR021543 Initiation of programmed cell death in C.elegans occurs by the binding of EGL-1 to CED-9 which disrupts a complex involving CED-4/CED-9 and allows CED-4 to activate CED-3, a caspase. It is the C-terminal domain of EGL-1 which is involved in the formation of the complex with CED-9. The formation of the complex induces structural rearrangements in CED-9 and EGL-1 adopts an extended alpha-helical conformation []. ; PDB: 1TY4_D.
Probab=48.95 E-value=15 Score=15.96 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=13.0
Q ss_pred chHHHHHHHHhhcCCE
Q psy15800 85 QSDTNHTQRCLASIMQ 100 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~ 100 (109)
.||+.+|.+|-.|+.+
T Consensus 2 ~IG~kla~MCDdFD~e 17 (21)
T PF11430_consen 2 EIGTKLAAMCDDFDAE 17 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4899999999888643
No 294
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=48.92 E-value=22 Score=25.48 Aligned_cols=24 Identities=8% Similarity=-0.182 Sum_probs=21.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+..++.++.+|++|++.++.
T Consensus 149 g~vG~~aiqlAk~~G~~Vi~~~~s 172 (325)
T TIGR02825 149 GAVGSVVGQIAKLKGCKVVGAAGS 172 (325)
T ss_pred cHHHHHHHHHHHHcCCEEEEEeCC
Confidence 789999999999999999887653
No 295
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.80 E-value=20 Score=27.54 Aligned_cols=24 Identities=8% Similarity=-0.184 Sum_probs=21.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|.++|+.|...|.+|.++|+.
T Consensus 25 G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 25 GVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 789999999999999999999854
No 296
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=48.77 E-value=19 Score=26.00 Aligned_cols=25 Identities=8% Similarity=-0.217 Sum_probs=22.0
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.+|+.++++++.+|++|++.++.
T Consensus 178 ~g~vG~~~~~~a~~~G~~v~~~~~~ 202 (337)
T cd05283 178 IGGLGHLAVKFAKALGAEVTAFSRS 202 (337)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEcCC
Confidence 3789999999999999999988764
No 297
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=48.71 E-value=20 Score=24.15 Aligned_cols=25 Identities=4% Similarity=-0.265 Sum_probs=21.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+++++.+...|..|...++.
T Consensus 15 ~g~iG~~la~~l~~~g~~v~~~~~~ 39 (245)
T PRK12936 15 SGGIGEEIARLLHAQGAIVGLHGTR 39 (245)
T ss_pred CChHHHHHHHHHHHCCCEEEEEcCC
Confidence 4789999999999999988877654
No 298
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=48.55 E-value=19 Score=25.93 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=22.0
Q ss_pred cchHHHHHHHHhhcCCE-EEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r~~ 108 (109)
|.+|++++..|...|++ |..++|..
T Consensus 135 GGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 135 GGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 67999999999999996 99998863
No 299
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=48.44 E-value=21 Score=27.93 Aligned_cols=21 Identities=5% Similarity=-0.040 Sum_probs=19.5
Q ss_pred cchHHHHHHHHhhcCCEEEEE
Q psy15800 84 TQSDTNHTQRCLASIMQLVYS 104 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~ 104 (109)
|++|+..|+.|..+|++|+++
T Consensus 246 GnVg~~aa~~L~e~GakVVav 266 (454)
T PTZ00079 246 GNVAQYAVEKLLQLGAKVLTM 266 (454)
T ss_pred CHHHHHHHHHHHHCCCEEEEE
Confidence 789999999999999999954
No 300
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=48.16 E-value=23 Score=25.86 Aligned_cols=19 Identities=5% Similarity=-0.111 Sum_probs=17.9
Q ss_pred chHHHHHHHHhhcCCEEEE
Q psy15800 85 QSDTNHTQRCLASIMQLVY 103 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~ 103 (109)
.||.++|+.+..-|++|+.
T Consensus 22 GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 22 GYGWAIAKALAAAGAEILV 40 (303)
T ss_pred cHHHHHHHHHHHCCCEEEE
Confidence 4999999999999999988
No 301
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=48.16 E-value=18 Score=25.57 Aligned_cols=23 Identities=4% Similarity=-0.146 Sum_probs=20.5
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|+.+++.++++|++|+...+
T Consensus 150 g~ig~~~~~~a~~~G~~v~~~~~ 172 (324)
T cd08292 150 GAVGKLVAMLAAARGINVINLVR 172 (324)
T ss_pred cHHHHHHHHHHHHCCCeEEEEec
Confidence 67999999999999999887754
No 302
>KOG1687|consensus
Probab=48.10 E-value=43 Score=22.04 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=41.6
Q ss_pred CCCCceEEEecCc-----cCCcccHHHHh--hcCcEEE-ecCCCCccchHHHHHHHHHHHhcCchHhHHHH
Q psy15800 5 AGENLKVISTFSV-----GHDHLHLDQIK--SRGIRVG-TVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 67 (109)
Q Consensus 5 ~~p~Lk~i~~~~~-----G~d~id~~~~~--~~gi~v~-n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~ 67 (109)
+.|.-||+.+.++ |+=|.-....+ ++=|+|- ..|| .++.||..+..+|-|.+++.+....|
T Consensus 95 QMPEpr~VisMGsCangGGyyhysYSvvRGcDriiPVDiYvPG--CPPtaEAllygilqLqkKi~R~r~~q 163 (168)
T KOG1687|consen 95 QMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPG--CPPTAEALLYGILQLQKKIKRIRPLQ 163 (168)
T ss_pred hCCCCeeEEEecccccCCceEEEEehhhccccceeeeeeecCC--CCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 5788899977654 44454433332 2345553 4677 67899999999999999988655444
No 303
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=48.05 E-value=22 Score=24.13 Aligned_cols=24 Identities=0% Similarity=-0.121 Sum_probs=19.7
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|+.|.++|+.+...|.+|+++..
T Consensus 28 SG~~G~~lA~~~~~~Ga~V~li~g 51 (185)
T PF04127_consen 28 SGKMGAALAEEAARRGAEVTLIHG 51 (185)
T ss_dssp -SHHHHHHHHHHHHTT-EEEEEE-
T ss_pred cCHHHHHHHHHHHHCCCEEEEEec
Confidence 399999999999999999998753
No 304
>PRK06128 oxidoreductase; Provisional
Probab=47.66 E-value=26 Score=24.90 Aligned_cols=23 Identities=0% Similarity=-0.145 Sum_probs=19.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.||+++++.+...|.+|+...+
T Consensus 65 ~gIG~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 65 SGIGRATAIAFAREGADIALNYL 87 (300)
T ss_pred CcHHHHHHHHHHHcCCEEEEEeC
Confidence 67999999999999999987543
No 305
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=47.57 E-value=15 Score=29.42 Aligned_cols=25 Identities=8% Similarity=-0.110 Sum_probs=22.6
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|++|+.+++.|+..|.++++.|..+
T Consensus 409 Gr~G~~va~~L~~~g~~vvvID~d~ 433 (601)
T PRK03659 409 GRFGQVIGRLLMANKMRITVLERDI 433 (601)
T ss_pred chHHHHHHHHHHhCCCCEEEEECCH
Confidence 8999999999999999999998653
No 306
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=47.51 E-value=21 Score=27.74 Aligned_cols=25 Identities=4% Similarity=-0.219 Sum_probs=22.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|-||-++|..++.||.+|..+.+..
T Consensus 182 G~IGlE~a~~~~~LG~~VTiie~~~ 206 (454)
T COG1249 182 GYIGLEFASVFAALGSKVTVVERGD 206 (454)
T ss_pred CHHHHHHHHHHHHcCCcEEEEecCC
Confidence 6799999999999999999887643
No 307
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.44 E-value=24 Score=23.64 Aligned_cols=24 Identities=8% Similarity=-0.132 Sum_probs=20.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|.||+.+++.+...|.+|+...+
T Consensus 15 sg~iG~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 15 ARGLGRAIALRLARAGADVVVHYR 38 (249)
T ss_pred CchHHHHHHHHHHHCCCeEEEEeC
Confidence 478999999999999999877443
No 308
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=47.32 E-value=22 Score=27.43 Aligned_cols=23 Identities=4% Similarity=-0.074 Sum_probs=20.5
Q ss_pred chHHHHHHHHhhcCCEEEEEccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.-...++++|+..|.+|.+|||-
T Consensus 330 Spa~~vi~~L~~~Ga~V~aYDP~ 352 (414)
T COG1004 330 SPALDIIKRLQEKGAEVIAYDPV 352 (414)
T ss_pred chHHHHHHHHHHCCCEEEEECch
Confidence 45778999999999999999985
No 309
>PRK09134 short chain dehydrogenase; Provisional
Probab=47.32 E-value=25 Score=24.22 Aligned_cols=23 Identities=4% Similarity=-0.142 Sum_probs=20.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.||+.+++.+...|++|+..++
T Consensus 19 ~giG~~la~~l~~~g~~v~~~~~ 41 (258)
T PRK09134 19 RRIGRAIALDLAAHGFDVAVHYN 41 (258)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeC
Confidence 68999999999999999987654
No 310
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=47.18 E-value=15 Score=29.51 Aligned_cols=24 Identities=8% Similarity=-0.122 Sum_probs=21.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|++|+.+++.|+..|.+++..|..
T Consensus 409 Gr~G~~va~~L~~~g~~vvvID~d 432 (621)
T PRK03562 409 GRFGQIVGRLLLSSGVKMTVLDHD 432 (621)
T ss_pred ChHHHHHHHHHHhCCCCEEEEECC
Confidence 899999999999999999988764
No 311
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=46.74 E-value=20 Score=26.34 Aligned_cols=24 Identities=0% Similarity=-0.176 Sum_probs=21.4
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.+|...++.++.+|+ +|++.++.
T Consensus 197 g~vG~~a~q~ak~~G~~~vi~~~~~ 221 (369)
T cd08301 197 GAVGLAVAEGARIRGASRIIGVDLN 221 (369)
T ss_pred CHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 7899999999999999 79988764
No 312
>PRK06123 short chain dehydrogenase; Provisional
Probab=46.58 E-value=24 Score=23.93 Aligned_cols=23 Identities=0% Similarity=-0.184 Sum_probs=19.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~ 105 (109)
.|.||..+++.+...|++|+..+
T Consensus 11 ~~~iG~~~a~~l~~~G~~vv~~~ 33 (248)
T PRK06123 11 SRGIGAATALLAAERGYAVCLNY 33 (248)
T ss_pred CchHHHHHHHHHHHCCCeEEEec
Confidence 47899999999999999887654
No 313
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=46.45 E-value=25 Score=25.78 Aligned_cols=24 Identities=13% Similarity=-0.244 Sum_probs=21.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|...++.++.+|++|++.++.
T Consensus 169 G~vG~~aiqlAk~~G~~Vi~~~~~ 192 (348)
T PLN03154 169 GAVGQLVGQLAKLHGCYVVGSAGS 192 (348)
T ss_pred cHHHHHHHHHHHHcCCEEEEEcCC
Confidence 789999999999999999987653
No 314
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=46.22 E-value=21 Score=25.20 Aligned_cols=24 Identities=8% Similarity=-0.251 Sum_probs=21.5
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|..+++.++..|.+|+..++.
T Consensus 157 g~vg~~~~~~a~~~g~~v~~~~~~ 180 (325)
T cd05280 157 GGVGSIAVAILAKLGYTVVALTGK 180 (325)
T ss_pred cHHHHHHHHHHHHcCCEEEEEeCC
Confidence 789999999999999999887764
No 315
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=46.22 E-value=17 Score=26.17 Aligned_cols=24 Identities=4% Similarity=-0.252 Sum_probs=21.5
Q ss_pred cchHHHHHHHHhhcCCE-EEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r~ 107 (109)
|.+|...++.++.+|++ |++.++.
T Consensus 173 G~vG~~~~~~ak~~G~~~vi~~~~~ 197 (339)
T cd08239 173 GPVGLGALMLARALGAEDVIGVDPS 197 (339)
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 78999999999999999 9888764
No 316
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=46.11 E-value=23 Score=25.42 Aligned_cols=25 Identities=4% Similarity=-0.023 Sum_probs=22.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
..||.++|+++..-|.+|+...|..
T Consensus 16 SGiG~A~A~~l~~~G~~vvl~aRR~ 40 (246)
T COG4221 16 SGIGEATARALAEAGAKVVLAARRE 40 (246)
T ss_pred chHHHHHHHHHHHCCCeEEEEeccH
Confidence 4699999999999999999988763
No 317
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.82 E-value=25 Score=26.69 Aligned_cols=23 Identities=4% Similarity=-0.123 Sum_probs=21.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.||+.+++.+...|++|+..++
T Consensus 220 ggIG~~la~~l~~~Ga~vi~~~~ 242 (450)
T PRK08261 220 RGIGAAIAEVLARDGAHVVCLDV 242 (450)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeC
Confidence 67999999999999999999876
No 318
>PRK12937 short chain dehydrogenase; Provisional
Probab=45.80 E-value=26 Score=23.67 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=20.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|.||+.+|+.+...|.+|+...+
T Consensus 14 ~~~iG~~la~~l~~~g~~v~~~~~ 37 (245)
T PRK12937 14 SRGIGAAIARRLAADGFAVAVNYA 37 (245)
T ss_pred CchHHHHHHHHHHHCCCEEEEecC
Confidence 478999999999999999876643
No 319
>PRK07201 short chain dehydrogenase; Provisional
Probab=45.78 E-value=18 Score=28.64 Aligned_cols=24 Identities=0% Similarity=-0.108 Sum_probs=21.6
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++++.+..-|.+|+..+|.
T Consensus 381 ~giG~~la~~l~~~G~~V~~~~r~ 404 (657)
T PRK07201 381 SGIGRATAIKVAEAGATVFLVARN 404 (657)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECC
Confidence 469999999999999999998875
No 320
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=45.76 E-value=18 Score=25.55 Aligned_cols=24 Identities=8% Similarity=-0.128 Sum_probs=20.7
Q ss_pred cchHHHHHHHHhhcCCE-EEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r~ 107 (109)
|.||...++.++.+|.+ |++.++.
T Consensus 130 G~vG~~~~~~ak~~G~~~Vi~~~~~ 154 (280)
T TIGR03366 130 GMLGLTAAAAAAAAGAARVVAADPS 154 (280)
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 78999999999999997 8887653
No 321
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=45.71 E-value=28 Score=21.70 Aligned_cols=24 Identities=8% Similarity=-0.076 Sum_probs=21.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
-.+|..+|+++...|.+-++|||.
T Consensus 64 ~~vG~lla~ra~~~gi~~vvfDrg 87 (109)
T CHL00139 64 KLVGQKLAKKSLKKGITKVVFDRG 87 (109)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCC
Confidence 368999999999999988899974
No 322
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=45.68 E-value=25 Score=27.37 Aligned_cols=25 Identities=12% Similarity=-0.045 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.-|..+++.|+..|.+|.++|..
T Consensus 15 LG~sG~a~a~~L~~~G~~v~v~D~~ 39 (448)
T COG0771 15 LGKSGLAAARFLLKLGAEVTVSDDR 39 (448)
T ss_pred cccccHHHHHHHHHCCCeEEEEcCC
Confidence 3899999999999999999999943
No 323
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=45.66 E-value=26 Score=25.42 Aligned_cols=25 Identities=0% Similarity=-0.261 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||..+|.+|...|.+|..+.|.
T Consensus 13 ~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 13 TGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 3789999999999999999988874
No 324
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.53 E-value=24 Score=27.28 Aligned_cols=23 Identities=4% Similarity=-0.070 Sum_probs=21.8
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|+-|+.+++.|...|++|+++|.
T Consensus 17 G~sG~~~~~~l~~~g~~v~~~d~ 39 (468)
T PRK04690 17 GREGRAAYRALRAHLPAQALTLF 39 (468)
T ss_pred chhhHHHHHHHHHcCCEEEEEcC
Confidence 89999999999999999999994
No 325
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=45.46 E-value=23 Score=26.34 Aligned_cols=24 Identities=4% Similarity=-0.237 Sum_probs=21.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|...++.++++|++|++.++.
T Consensus 188 G~vG~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 188 GGLGHIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCC
Confidence 789999999999999999887643
No 326
>PRK08324 short chain dehydrogenase; Validated
Probab=45.46 E-value=22 Score=28.78 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=22.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+.+++.+...|.+|+..+|.
T Consensus 432 ggIG~~la~~L~~~Ga~Vvl~~r~ 455 (681)
T PRK08324 432 GGIGKATAKRLAAEGACVVLADLD 455 (681)
T ss_pred CHHHHHHHHHHHHCcCEEEEEeCC
Confidence 679999999999999999999875
No 327
>PLN02206 UDP-glucuronate decarboxylase
Probab=45.35 E-value=23 Score=27.17 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=21.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|-||+.+++.|..-|.+|+++|+
T Consensus 129 GfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 129 GFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred cHHHHHHHHHHHHCcCEEEEEeC
Confidence 67999999999999999999875
No 328
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=45.11 E-value=22 Score=25.07 Aligned_cols=25 Identities=12% Similarity=-0.186 Sum_probs=21.8
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.+|..++++++.+|.+|++.++.
T Consensus 152 ~~~~g~~~~~la~~~g~~v~~~~~~ 176 (324)
T cd08244 152 AGGLGSLLVQLAKAAGATVVGAAGG 176 (324)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3789999999999999999888753
No 329
>PLN02214 cinnamoyl-CoA reductase
Probab=44.99 E-value=26 Score=25.64 Aligned_cols=25 Identities=4% Similarity=-0.303 Sum_probs=21.9
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|-||+.+++.|..-|.+|.+.+|.
T Consensus 19 tGfIG~~l~~~L~~~G~~V~~~~r~ 43 (342)
T PLN02214 19 GGYIASWIVKILLERGYTVKGTVRN 43 (342)
T ss_pred CcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 3789999999999999999988764
No 330
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=44.81 E-value=29 Score=23.53 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=19.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEE
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYS 104 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~ 104 (109)
.|.||+.+|+.+...|.+|+..
T Consensus 12 s~giG~~~a~~l~~~G~~vv~~ 33 (246)
T PRK12938 12 MGGIGTSICQRLHKDGFKVVAG 33 (246)
T ss_pred CChHHHHHHHHHHHcCCEEEEE
Confidence 4789999999999999998874
No 331
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=44.55 E-value=25 Score=28.55 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=21.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+++++.+...|.+|+..++.
T Consensus 424 ggIG~aiA~~La~~Ga~Vvi~~r~ 447 (676)
T TIGR02632 424 GGIGRETARRLAAEGAHVVLADLN 447 (676)
T ss_pred cHHHHHHHHHHHhCCCEEEEEeCC
Confidence 579999999999999999998875
No 332
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=44.55 E-value=21 Score=25.36 Aligned_cols=24 Identities=13% Similarity=-0.158 Sum_probs=21.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.+++.++..|++|++.++.
T Consensus 151 g~ig~~~~~lak~~G~~v~~~~~~ 174 (327)
T PRK10754 151 GGVGLIACQWAKALGAKLIGTVGS 174 (327)
T ss_pred cHHHHHHHHHHHHcCCEEEEEeCC
Confidence 689999999999999999887653
No 333
>PLN02427 UDP-apiose/xylose synthase
Probab=44.50 E-value=27 Score=25.82 Aligned_cols=25 Identities=4% Similarity=0.024 Sum_probs=21.4
Q ss_pred ccchHHHHHHHHhhc-CCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLAS-IMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~f-g~~V~~~~r~ 107 (109)
.|-||+.+++.|..- |.+|+++|+.
T Consensus 23 tGfIGs~lv~~L~~~~g~~V~~l~r~ 48 (386)
T PLN02427 23 GGFIGSHLCEKLMTETPHKVLALDVY 48 (386)
T ss_pred cchHHHHHHHHHHhcCCCEEEEEecC
Confidence 378999999999987 5899999864
No 334
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=44.37 E-value=21 Score=26.00 Aligned_cols=24 Identities=13% Similarity=-0.177 Sum_probs=21.6
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|...++.++..|.+|++.++.
T Consensus 176 G~vG~~a~~~a~~~G~~vi~~~~~ 199 (349)
T TIGR03201 176 GGVGGYMVQTAKAMGAAVVAIDID 199 (349)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCC
Confidence 889999999999999999988754
No 335
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=44.10 E-value=22 Score=26.24 Aligned_cols=24 Identities=4% Similarity=-0.112 Sum_probs=21.3
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.||...++.++.+|. +|++.++.
T Consensus 195 G~iG~~a~q~Ak~~G~~~Vi~~~~~ 219 (368)
T TIGR02818 195 GGIGLSVIQGARMAKASRIIAIDIN 219 (368)
T ss_pred CHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 7899999999999999 79988754
No 336
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=44.02 E-value=22 Score=25.08 Aligned_cols=24 Identities=13% Similarity=-0.111 Sum_probs=21.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.+++.++..|.+|+..++.
T Consensus 173 g~vG~~~~~~a~~~g~~v~~~~~~ 196 (332)
T cd08259 173 GGVGIHAIQLAKALGARVIAVTRS 196 (332)
T ss_pred CHHHHHHHHHHHHcCCeEEEEeCC
Confidence 689999999999999999887653
No 337
>PLN02858 fructose-bisphosphate aldolase
Probab=43.86 E-value=20 Score=31.79 Aligned_cols=26 Identities=8% Similarity=-0.072 Sum_probs=23.9
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.+|..+|+.|..-|.+|.+|||.+
T Consensus 12 LG~MG~~mA~~L~~~G~~v~v~dr~~ 37 (1378)
T PLN02858 12 LDSLSFELASSLLRSGFKVQAFEIST 37 (1378)
T ss_pred hhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 58999999999999999999999874
No 338
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=43.84 E-value=23 Score=25.51 Aligned_cols=25 Identities=4% Similarity=-0.105 Sum_probs=21.5
Q ss_pred ccchHHHHHHHHhhcC-CEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASI-MQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg-~~V~~~~r~ 107 (109)
.+.||+++|+.+...| .+|+..+|.
T Consensus 12 s~GIG~aia~~L~~~G~~~V~l~~r~ 37 (314)
T TIGR01289 12 SSGLGLYAAKALAATGEWHVIMACRD 37 (314)
T ss_pred CChHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3679999999999999 999888764
No 339
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=43.53 E-value=27 Score=24.38 Aligned_cols=24 Identities=8% Similarity=-0.181 Sum_probs=21.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.+++.++.+|++|++.++.
T Consensus 143 ~~~g~~~~~~a~~~g~~v~~~~~~ 166 (305)
T cd08270 143 GGVGRFAVQLAALAGAHVVAVVGS 166 (305)
T ss_pred cHHHHHHHHHHHHcCCEEEEEeCC
Confidence 689999999999999999887653
No 340
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=43.52 E-value=21 Score=25.07 Aligned_cols=24 Identities=8% Similarity=-0.200 Sum_probs=21.0
Q ss_pred cchHHHHHHHHhhcCCE-EEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r~ 107 (109)
|.+|+.++++++..|++ |++.++.
T Consensus 139 g~vg~~~~~la~~~g~~~v~~~~~~ 163 (312)
T cd08269 139 GFIGLLFLQLAAAAGARRVIAIDRR 163 (312)
T ss_pred CHHHHHHHHHHHHcCCcEEEEECCC
Confidence 78999999999999999 8877653
No 341
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=43.47 E-value=26 Score=25.35 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=21.7
Q ss_pred hhccchHHHHHHHHhhcC--CEEEEEccc
Q psy15800 81 ELITQSDTNHTQRCLASI--MQLVYSTCY 107 (109)
Q Consensus 81 ~l~G~IG~~va~~~~~fg--~~V~~~~r~ 107 (109)
.-.|.||+.+++.|..-| .+|+.++|.
T Consensus 11 GatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 11 GGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 335899999999998775 689888764
No 342
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=43.14 E-value=27 Score=25.43 Aligned_cols=23 Identities=0% Similarity=-0.312 Sum_probs=21.4
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|...++.++..|++|+++++
T Consensus 182 G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 182 GPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CHHHHHHHHHHHHcCCeEEEEec
Confidence 88999999999999999999876
No 343
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=42.99 E-value=31 Score=23.70 Aligned_cols=24 Identities=13% Similarity=-0.098 Sum_probs=22.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|..-++.|..+|++|..++|.
T Consensus 18 G~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 18 GDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCC
Confidence 789999999999999999999875
No 344
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=42.92 E-value=28 Score=26.15 Aligned_cols=23 Identities=4% Similarity=-0.061 Sum_probs=20.2
Q ss_pred hHHHHHHHHhhcCCEEEEEcccc
Q psy15800 86 SDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 86 IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
=|..+|+.|..-|.+|++|||.+
T Consensus 31 gGspMArnLlkAGheV~V~Drnr 53 (341)
T TIGR01724 31 GGSRMAIEFAMAGHDVVLAEPNR 53 (341)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCh
Confidence 38999999999999999998753
No 345
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=42.62 E-value=24 Score=25.94 Aligned_cols=24 Identities=8% Similarity=-0.121 Sum_probs=21.2
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.||...++.++.+|+ +|++.++.
T Consensus 196 G~vG~~a~~~ak~~G~~~vi~~~~~ 220 (368)
T cd08300 196 GAVGLAVIQGAKAAGASRIIGIDIN 220 (368)
T ss_pred CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 7899999999999999 69888754
No 346
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.11 E-value=33 Score=24.92 Aligned_cols=21 Identities=5% Similarity=-0.108 Sum_probs=19.4
Q ss_pred chHHHHHHHHhhcCCEEEEEc
Q psy15800 85 QSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~ 105 (109)
.||+++|+.|..-|++|+..+
T Consensus 21 GIG~a~A~~la~~Ga~Vvv~~ 41 (299)
T PRK06300 21 GYGWGIAKALAEAGATILVGT 41 (299)
T ss_pred CHHHHHHHHHHHCCCEEEEEe
Confidence 699999999999999998865
No 347
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=42.09 E-value=24 Score=25.26 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=21.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|...++.++.+|++|++.++.
T Consensus 154 g~vG~~a~q~a~~~G~~vi~~~~~ 177 (324)
T cd08291 154 SALGRMLVRLCKADGIKVINIVRR 177 (324)
T ss_pred cHHHHHHHHHHHHcCCEEEEEeCC
Confidence 789999999999999999887653
No 348
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=42.00 E-value=32 Score=23.51 Aligned_cols=24 Identities=8% Similarity=-0.100 Sum_probs=21.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|...++.|...|.+|+.++|.
T Consensus 19 G~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 19 GKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CHHHHHHHHHHHHCCCeEEEEcCC
Confidence 789999999999999999998874
No 349
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=41.94 E-value=34 Score=21.60 Aligned_cols=24 Identities=13% Similarity=-0.071 Sum_probs=21.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
-.+|..+|+++...|.+=++|||-
T Consensus 72 ~~vG~~la~ra~~~gi~~vvfDrg 95 (117)
T PRK05593 72 KKVGKLIAERAKAKGIKQVVFDRG 95 (117)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCC
Confidence 358999999999999988899974
No 350
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=41.91 E-value=28 Score=24.17 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=21.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.+++.++..|.+|+..++.
T Consensus 150 ~~ig~~~~~~~~~~g~~v~~~~~~ 173 (323)
T cd05276 150 SGVGTAAIQLAKALGARVIATAGS 173 (323)
T ss_pred ChHHHHHHHHHHHcCCEEEEEcCC
Confidence 679999999999999999887653
No 351
>KOG0409|consensus
Probab=41.79 E-value=31 Score=25.70 Aligned_cols=26 Identities=0% Similarity=-0.051 Sum_probs=23.9
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|..|..++.-|-.-|.+|++|||+.
T Consensus 43 LG~MG~~M~~nLik~G~kVtV~dr~~ 68 (327)
T KOG0409|consen 43 LGNMGSAMVSNLIKAGYKVTVYDRTK 68 (327)
T ss_pred eccchHHHHHHHHHcCCEEEEEeCcH
Confidence 38899999999999999999999974
No 352
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=41.62 E-value=25 Score=25.56 Aligned_cols=24 Identities=0% Similarity=-0.204 Sum_probs=21.4
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.+|+.+++.++.+|+ +|++.++.
T Consensus 187 g~vG~~~~~lak~~G~~~v~~~~~~ 211 (361)
T cd08231 187 GPLGLYAVAAAKLAGARRVIVIDGS 211 (361)
T ss_pred CHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 7899999999999999 89887653
No 353
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=41.18 E-value=24 Score=25.02 Aligned_cols=24 Identities=8% Similarity=-0.248 Sum_probs=21.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|.+|+.+++.++..|.+|++.++
T Consensus 164 ~g~vg~~~~q~a~~~G~~vi~~~~ 187 (319)
T cd08242 164 DGKLGLLIAQVLALTGPDVVLVGR 187 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcC
Confidence 378999999999999999988765
No 354
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=41.14 E-value=25 Score=24.41 Aligned_cols=24 Identities=4% Similarity=-0.099 Sum_probs=21.7
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||+.+|-+|.-+|.+++++.|.
T Consensus 51 G~Igkk~Aa~L~s~G~~a~fv~p~ 74 (202)
T COG0794 51 GLIGKKFAARLASTGTPAFFVGPA 74 (202)
T ss_pred HHHHHHHHHHHHccCCceEEecCc
Confidence 679999999999999999988754
No 355
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=41.12 E-value=28 Score=24.80 Aligned_cols=24 Identities=13% Similarity=-0.076 Sum_probs=21.4
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.+++.++..|++|++.++.
T Consensus 173 g~~g~~~~~la~~~g~~vi~~~~~ 196 (334)
T PRK13771 173 GGVGIHAIQVAKALGAKVIAVTSS 196 (334)
T ss_pred ccHHHHHHHHHHHcCCEEEEEeCC
Confidence 789999999999999999887653
No 356
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=40.98 E-value=33 Score=24.61 Aligned_cols=24 Identities=8% Similarity=-0.283 Sum_probs=21.0
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.+|+..++.++.+|+ +|++.++.
T Consensus 165 g~vG~~aiqlAk~~G~~~Vi~~~~s 189 (345)
T cd08293 165 GACGSLAGQIGRLLGCSRVVGICGS 189 (345)
T ss_pred cHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 7899999999999999 79887653
No 357
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=40.39 E-value=24 Score=25.18 Aligned_cols=24 Identities=4% Similarity=-0.272 Sum_probs=20.5
Q ss_pred cchHHHHHHHHhhcCCE-EEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r~ 107 (109)
|.+|+.+++++++.|++ |++.++.
T Consensus 169 g~vg~~~~~la~~~G~~~v~~~~~~ 193 (334)
T cd08234 169 GPIGLLLAQLLKLNGASRVTVAEPN 193 (334)
T ss_pred CHHHHHHHHHHHHcCCcEEEEECCC
Confidence 78999999999999998 7777653
No 358
>PLN00198 anthocyanidin reductase; Provisional
Probab=40.38 E-value=35 Score=24.65 Aligned_cols=24 Identities=4% Similarity=-0.231 Sum_probs=20.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|-||+.+++.|..-|.+|.+..|
T Consensus 18 ~GfIG~~l~~~L~~~g~~V~~~~r 41 (338)
T PLN00198 18 TGFLASLLIKLLLQKGYAVNTTVR 41 (338)
T ss_pred chHHHHHHHHHHHHCCCEEEEEEC
Confidence 378999999999999999876654
No 359
>PLN02740 Alcohol dehydrogenase-like
Probab=40.19 E-value=28 Score=25.74 Aligned_cols=24 Identities=4% Similarity=-0.126 Sum_probs=21.1
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.||...++.++.+|. +|++.|+.
T Consensus 208 G~vG~~a~q~ak~~G~~~Vi~~~~~ 232 (381)
T PLN02740 208 GAVGLAVAEGARARGASKIIGVDIN 232 (381)
T ss_pred CHHHHHHHHHHHHCCCCcEEEEcCC
Confidence 7899999999999999 59888754
No 360
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=39.93 E-value=38 Score=21.33 Aligned_cols=23 Identities=9% Similarity=-0.171 Sum_probs=20.5
Q ss_pred chHHHHHHHHhhcCCEEEEEccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.+|..+|+++...|.+-+.|||-
T Consensus 70 ~vG~~la~ra~~~gi~~vvfDrg 92 (114)
T TIGR00060 70 KVGKLVAERLKEKGIKDVVFDRG 92 (114)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCC
Confidence 58999999999999988889974
No 361
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=39.92 E-value=30 Score=24.07 Aligned_cols=24 Identities=8% Similarity=-0.099 Sum_probs=21.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.+++.++..|.+|+..++.
T Consensus 150 ~~~g~~~~~~a~~~g~~v~~~~~~ 173 (323)
T cd08241 150 GGVGLAAVQLAKALGARVIAAASS 173 (323)
T ss_pred chHHHHHHHHHHHhCCEEEEEeCC
Confidence 679999999999999999887653
No 362
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=39.82 E-value=25 Score=25.60 Aligned_cols=25 Identities=4% Similarity=-0.096 Sum_probs=20.9
Q ss_pred cchHHHHHHHHhhcC-CEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASI-MQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg-~~V~~~~r~~ 108 (109)
|.||+.+++.++..| .+|+.+||..
T Consensus 187 G~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 187 GEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 689999999999876 4788898863
No 363
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=39.82 E-value=29 Score=24.10 Aligned_cols=24 Identities=4% Similarity=-0.108 Sum_probs=21.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.+++.+++.|.+|+..++.
T Consensus 155 ~~~g~~~~~~a~~~g~~v~~~~~~ 178 (325)
T cd08253 155 GAVGHAAVQLARWAGARVIATASS 178 (325)
T ss_pred chHHHHHHHHHHHcCCEEEEEeCC
Confidence 679999999999999999887663
No 364
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=39.72 E-value=55 Score=20.24 Aligned_cols=25 Identities=4% Similarity=-0.213 Sum_probs=21.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
++.|..+.+.++..|.+|+.++|..
T Consensus 13 ~~~g~~v~~~l~~~G~~v~~Vnp~~ 37 (116)
T PF13380_consen 13 GKFGYRVLRNLKAAGYEVYPVNPKG 37 (116)
T ss_dssp TSHHHHHHHHHHHTT-EEEEESTTC
T ss_pred CChHHHHHHHHHhCCCEEEEECCCc
Confidence 6789999999999999999998764
No 365
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.50 E-value=36 Score=25.76 Aligned_cols=25 Identities=8% Similarity=-0.121 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|..|...++.|+..|.+|.++|..
T Consensus 14 ~G~sG~s~~~~l~~~G~~v~~~D~~ 38 (438)
T PRK03806 14 LGLTGLSCVDFFLARGVTPRVIDTR 38 (438)
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3789999999999999999999953
No 366
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=39.44 E-value=27 Score=25.48 Aligned_cols=24 Identities=0% Similarity=-0.176 Sum_probs=20.9
Q ss_pred cchHHHHHHHHhhcCCE-EEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r~ 107 (109)
|.+|...++.++.+|.+ |++.++.
T Consensus 186 g~vG~~a~~~ak~~G~~~Vi~~~~~ 210 (358)
T TIGR03451 186 GGVGDAAIAGAALAGASKIIAVDID 210 (358)
T ss_pred CHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 78999999999999995 8888754
No 367
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=39.31 E-value=29 Score=25.01 Aligned_cols=25 Identities=8% Similarity=-0.064 Sum_probs=22.2
Q ss_pred cchHHHHHHHHhhcCC-EEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~~ 108 (109)
|..|+.++..|...|+ +|..+||..
T Consensus 136 GGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 136 GGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 6789999999999998 799999864
No 368
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=39.29 E-value=39 Score=25.52 Aligned_cols=26 Identities=0% Similarity=-0.267 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
..+-...+++.|...|.+|.+|||+.
T Consensus 331 r~sp~~~~~~~L~~~g~~v~~~DP~~ 356 (411)
T TIGR03026 331 RESPALDIIELLKEKGAKVKAYDPLV 356 (411)
T ss_pred ccChHHHHHHHHHhCCCEEEEECCCC
Confidence 34678899999999999999999974
No 369
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=39.24 E-value=28 Score=25.71 Aligned_cols=24 Identities=13% Similarity=-0.168 Sum_probs=21.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|..++..++++|++|++.++.
T Consensus 204 g~iG~a~~~lak~~G~~vv~~~~s 227 (393)
T cd08246 204 GGLGSMAIQLARAAGANPVAVVSS 227 (393)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCC
Confidence 789999999999999998887653
No 370
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=39.21 E-value=38 Score=24.89 Aligned_cols=23 Identities=4% Similarity=-0.178 Sum_probs=20.5
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.||...++.++.+|.+|++.+.
T Consensus 193 G~vG~~avq~Ak~~Ga~vi~~~~ 215 (360)
T PLN02586 193 GGLGHVAVKIGKAFGLKVTVISS 215 (360)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeC
Confidence 78999999999999999887654
No 371
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=39.12 E-value=35 Score=24.28 Aligned_cols=25 Identities=4% Similarity=-0.059 Sum_probs=21.8
Q ss_pred ccchHHHHHHHHhhcC-CEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASI-MQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg-~~V~~~~r~ 107 (109)
.|.+|+.+++.++..| ++|++.++.
T Consensus 159 ~g~vg~~~~~~a~~~G~~~v~~~~~~ 184 (336)
T cd08252 159 AGGVGSIAIQLAKQLTGLTVIATASR 184 (336)
T ss_pred CchHHHHHHHHHHHcCCcEEEEEcCC
Confidence 3789999999999999 999988653
No 372
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=38.87 E-value=43 Score=22.76 Aligned_cols=24 Identities=4% Similarity=-0.100 Sum_probs=20.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
+.||+++|+.+..-|.+|++..+.
T Consensus 15 ~GiG~aia~~l~~~G~~v~~~~~~ 38 (251)
T COG1028 15 SGIGRAIARALAREGARVVVAARR 38 (251)
T ss_pred CHHHHHHHHHHHHCCCeEEEEcCC
Confidence 369999999999999997776554
No 373
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=38.86 E-value=32 Score=24.02 Aligned_cols=23 Identities=9% Similarity=-0.123 Sum_probs=20.7
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|+.+++.++..|++|+..++
T Consensus 153 g~~g~~~~~~a~~~g~~v~~~~~ 175 (320)
T cd08243 153 SSVGLAALKLAKALGATVTATTR 175 (320)
T ss_pred ChHHHHHHHHHHHcCCEEEEEeC
Confidence 78999999999999999987754
No 374
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=38.78 E-value=31 Score=25.04 Aligned_cols=24 Identities=4% Similarity=-0.159 Sum_probs=20.9
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.+|...++.++..|+ +|++.++.
T Consensus 179 G~vG~~aiqlak~~G~~~Vi~~~~~ 203 (343)
T PRK09880 179 GPIGCLIVAAVKTLGAAEIVCADVS 203 (343)
T ss_pred CHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 7899999999999999 58887754
No 375
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=38.70 E-value=11 Score=24.28 Aligned_cols=32 Identities=22% Similarity=0.103 Sum_probs=20.4
Q ss_pred CCCCceEEEecCccCCcccH---HHHhhcCcEEEe
Q psy15800 5 AGENLKVISTFSVGHDHLHL---DQIKSRGIRVGT 36 (109)
Q Consensus 5 ~~p~Lk~i~~~~~G~d~id~---~~~~~~gi~v~n 36 (109)
.||+||.||++++=+..+-- -.+.-.||.+.-
T Consensus 39 ~CP~lk~iqiP~SY~~t~Sksi~mfL~mqgI~Lle 73 (131)
T PF08004_consen 39 RCPNLKAIQIPPSYYKTLSKSIKMFLEMQGIELLE 73 (131)
T ss_pred hCCCCeEEeCChHHHHHHhHHHHHHHHhcCceeec
Confidence 68999999998876655431 123345666643
No 376
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=38.66 E-value=33 Score=24.38 Aligned_cols=25 Identities=12% Similarity=-0.104 Sum_probs=19.9
Q ss_pred ccchHHHHHHHHhhcC----CEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASI----MQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg----~~V~~~~r~ 107 (109)
.|++|..+++.+..-| -+|+++||.
T Consensus 11 ~G~mG~aia~~l~~~g~~~~~~v~v~~r~ 39 (279)
T PRK07679 11 AGSIAEAIIGGLLHANVVKGEQITVSNRS 39 (279)
T ss_pred ccHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence 5888999999887665 578888875
No 377
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=38.49 E-value=33 Score=24.27 Aligned_cols=23 Identities=13% Similarity=-0.161 Sum_probs=20.4
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|+.+++.++.+|++|++.+.
T Consensus 156 g~vg~~~~~la~~~G~~vi~~~~ 178 (323)
T TIGR02823 156 GGVGSLAVAILSKLGYEVVASTG 178 (323)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeC
Confidence 78999999999999999887643
No 378
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=38.08 E-value=43 Score=22.31 Aligned_cols=24 Identities=4% Similarity=-0.083 Sum_probs=21.0
Q ss_pred cc-hHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQ-SDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~-IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|. +|+.+++.|...|.+|...+|+
T Consensus 53 G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 53 SNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred cHHHHHHHHHHHhhCCCEEEEEECC
Confidence 66 4899999999999999988875
No 379
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=37.76 E-value=37 Score=23.92 Aligned_cols=23 Identities=4% Similarity=-0.187 Sum_probs=20.5
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|+.+++.+++.|.+|++..+
T Consensus 149 ~~vg~~~~~~a~~~g~~v~~~~~ 171 (323)
T cd05282 149 SAVGRMLIQLAKLLGFKTINVVR 171 (323)
T ss_pred cHHHHHHHHHHHHCCCeEEEEec
Confidence 67999999999999999987654
No 380
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=37.67 E-value=39 Score=23.94 Aligned_cols=24 Identities=8% Similarity=-0.249 Sum_probs=21.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.+++.++..|.+|++.++.
T Consensus 156 g~ig~~~~~~a~~~G~~vi~~~~~ 179 (329)
T cd05288 156 GAVGSVVGQIAKLLGARVVGIAGS 179 (329)
T ss_pred chHHHHHHHHHHHcCCEEEEEeCC
Confidence 689999999999999999988653
No 381
>PRK12746 short chain dehydrogenase; Provisional
Probab=37.58 E-value=42 Score=22.84 Aligned_cols=22 Identities=5% Similarity=-0.170 Sum_probs=19.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEE
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYS 104 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~ 104 (109)
.|.||..+++.+...|.+|+..
T Consensus 15 sg~iG~~la~~l~~~G~~v~i~ 36 (254)
T PRK12746 15 SRGIGRAIAMRLANDGALVAIH 36 (254)
T ss_pred CchHHHHHHHHHHHCCCEEEEE
Confidence 4789999999999999998764
No 382
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=37.40 E-value=43 Score=22.67 Aligned_cols=23 Identities=9% Similarity=-0.091 Sum_probs=20.5
Q ss_pred chHHHHHHHHhhcCCEEEEEccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.+|+.+++.++..|.+|++.++.
T Consensus 145 ~~G~~~~~~a~~~g~~v~~~~~~ 167 (271)
T cd05188 145 GVGLLAAQLAKAAGARVIVTDRS 167 (271)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCC
Confidence 39999999999999999988764
No 383
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=37.39 E-value=40 Score=22.93 Aligned_cols=24 Identities=4% Similarity=-0.172 Sum_probs=21.6
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.+|.++++.|...|. ++..+|+.
T Consensus 30 GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 30 GGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CHHHHHHHHHHHHcCCCeEEEecCC
Confidence 7899999999999998 79888864
No 384
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=37.38 E-value=34 Score=27.62 Aligned_cols=25 Identities=12% Similarity=-0.116 Sum_probs=21.6
Q ss_pred ccchHHHHHHHHhhc-CCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLAS-IMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~f-g~~V~~~~r~ 107 (109)
.|-||+.+++.|..- |.+|+++||.
T Consensus 324 tGFIGs~Lv~~Ll~~~g~~V~~l~r~ 349 (660)
T PRK08125 324 NGFIGNHLTERLLRDDNYEVYGLDIG 349 (660)
T ss_pred CchHHHHHHHHHHhCCCcEEEEEeCC
Confidence 378999999999874 7999999874
No 385
>KOG1014|consensus
Probab=37.20 E-value=41 Score=24.98 Aligned_cols=25 Identities=4% Similarity=-0.085 Sum_probs=22.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
..||++.|+.|.--|++|+..+|+.
T Consensus 59 DGIGKayA~eLAkrG~nvvLIsRt~ 83 (312)
T KOG1014|consen 59 DGIGKAYARELAKRGFNVVLISRTQ 83 (312)
T ss_pred CcchHHHHHHHHHcCCEEEEEeCCH
Confidence 3799999999999999999988864
No 386
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=37.11 E-value=44 Score=23.04 Aligned_cols=25 Identities=4% Similarity=-0.149 Sum_probs=21.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.+|+.++++++++|++|++.++.
T Consensus 130 ~~~~g~~~~~~a~~~g~~v~~~~~~ 154 (303)
T cd08251 130 TGGTGLMAVQLARLKGAEIYATASS 154 (303)
T ss_pred CcHHHHHHHHHHHHcCCEEEEEcCC
Confidence 3689999999999999999887653
No 387
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=37.00 E-value=41 Score=23.50 Aligned_cols=23 Identities=9% Similarity=-0.086 Sum_probs=21.0
Q ss_pred chHHHHHHHHhhcCCEEEEEccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.+|+.+|+++..-|.+=++|||.
T Consensus 167 ~VGk~IAerAl~kGI~kVvFDRg 189 (211)
T PTZ00032 167 ELGKLIGRKALSKGISKVRFDRA 189 (211)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCC
Confidence 58999999999999998899985
No 388
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=36.85 E-value=40 Score=23.93 Aligned_cols=23 Identities=4% Similarity=-0.127 Sum_probs=20.5
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|+.+++.+++.|.+|++.++
T Consensus 173 g~vg~~~~~~a~~~G~~v~~~~~ 195 (325)
T cd08264 173 GNTGIFAVQLAKMMGAEVIAVSR 195 (325)
T ss_pred chHHHHHHHHHHHcCCeEEEEeH
Confidence 78999999999999999988653
No 389
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=36.68 E-value=33 Score=25.54 Aligned_cols=23 Identities=17% Similarity=-0.142 Sum_probs=20.6
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|+.+++.++++|++|++.++
T Consensus 200 g~vG~~ai~~ak~~G~~vi~~~~ 222 (398)
T TIGR01751 200 GGLGSYATQLARAGGGNPVAVVS 222 (398)
T ss_pred cHHHHHHHHHHHHcCCeEEEEcC
Confidence 78999999999999999887764
No 390
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=36.67 E-value=36 Score=24.17 Aligned_cols=24 Identities=4% Similarity=-0.132 Sum_probs=21.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.+++.++.+|.+|+..++.
T Consensus 150 g~ig~~~~~~a~~~g~~v~~~~~~ 173 (329)
T cd08250 150 GGTGQFAVQLAKLAGCHVIGTCSS 173 (329)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCc
Confidence 679999999999999999887653
No 391
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=36.43 E-value=39 Score=19.45 Aligned_cols=22 Identities=0% Similarity=-0.153 Sum_probs=20.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEE
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYS 104 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~ 104 (109)
.|.||....+.|+..|.+|+..
T Consensus 59 ~~~iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 59 CGGIGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp ESCSCHHHHHHHHHTTSEEEES
T ss_pred EeCCCHHHHHHHHHCCCEEEEc
Confidence 3899999999999999999875
No 392
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=36.37 E-value=36 Score=23.54 Aligned_cols=25 Identities=12% Similarity=-0.161 Sum_probs=21.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.+|+..++.++++|.+|+..++.
T Consensus 146 ~g~~g~~~~~~a~~~g~~v~~~~~~ 170 (320)
T cd05286 146 AGGVGLLLTQWAKALGATVIGTVSS 170 (320)
T ss_pred CchHHHHHHHHHHHcCCEEEEEcCC
Confidence 3679999999999999999887653
No 393
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=36.19 E-value=45 Score=25.25 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=24.3
Q ss_pred HHHHhhcCcEE-EecCCCCccchHHHHHHHHHH
Q psy15800 24 LDQIKSRGIRV-GTVGPVSSDAVAEFNIGLAIA 55 (109)
Q Consensus 24 ~~~~~~~gi~v-~n~~g~~~~~vAE~~l~~~L~ 55 (109)
++++.++||+| +|..|.++...+|-+.-+.-.
T Consensus 64 L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e 96 (362)
T PF07287_consen 64 LPAAAEKGIKVITNAGGLNPAGCADIVREIARE 96 (362)
T ss_pred HHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHh
Confidence 56788999976 788888888877776665544
No 394
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=35.89 E-value=32 Score=24.68 Aligned_cols=25 Identities=8% Similarity=-0.121 Sum_probs=19.9
Q ss_pred ccchHHHHHHHHhh--cCCEEE-EEccc
Q psy15800 83 ITQSDTNHTQRCLA--SIMQLV-YSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~--fg~~V~-~~~r~ 107 (109)
.|+||+.+++.+.. .+++|. .+||.
T Consensus 14 ~G~IG~~~a~~L~~~~~~~el~aV~dr~ 41 (271)
T PRK13302 14 LGAIGKAIAQALDRGLPGLTLSAVAVRD 41 (271)
T ss_pred ccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 48999999999985 588887 55764
No 395
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=35.61 E-value=45 Score=26.72 Aligned_cols=25 Identities=8% Similarity=-0.158 Sum_probs=22.7
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|+.|+.++..++.+|.+|+.+|+.+
T Consensus 31 Gqlg~mla~aA~~lG~~Vi~ld~~~ 55 (577)
T PLN02948 31 GQLGRMLCQAASQMGIKVKVLDPLE 55 (577)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 6899999999999999999998754
No 396
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.54 E-value=54 Score=22.18 Aligned_cols=23 Identities=9% Similarity=-0.158 Sum_probs=19.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~ 105 (109)
.|.||+.+++.+..-|.+|+...
T Consensus 15 sg~iG~~l~~~l~~~g~~v~~~~ 37 (252)
T PRK06077 15 GRGIGRAIAVRLAKEGSLVVVNA 37 (252)
T ss_pred CChHHHHHHHHHHHCCCEEEEEe
Confidence 47899999999999999987644
No 397
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=35.40 E-value=44 Score=24.50 Aligned_cols=24 Identities=0% Similarity=-0.172 Sum_probs=21.2
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.+|...++.++.+|. +|++.++.
T Consensus 194 g~vG~~~~~~a~~~G~~~Vi~~~~~ 218 (365)
T cd08277 194 GAVGLSAIMGAKIAGASRIIGVDIN 218 (365)
T ss_pred CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 7899999999999999 68888754
No 398
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=35.35 E-value=49 Score=23.24 Aligned_cols=24 Identities=4% Similarity=-0.139 Sum_probs=21.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
+.+|+.+++.+++.|.+|+..++.
T Consensus 177 ~~iG~~~~~~~~~~g~~v~~~~~~ 200 (342)
T cd08266 177 SGVGSAAIQIAKLFGATVIATAGS 200 (342)
T ss_pred chHHHHHHHHHHHcCCEEEEEeCC
Confidence 479999999999999999887654
No 399
>KOG1201|consensus
Probab=35.22 E-value=49 Score=24.46 Aligned_cols=25 Identities=12% Similarity=-0.133 Sum_probs=22.2
Q ss_pred chHHHHHHHHhhcCCEEEEEccccC
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCYNQ 109 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~~~ 109 (109)
.+|+++|.-+...|++++.||...|
T Consensus 49 GlGr~ialefa~rg~~~vl~Din~~ 73 (300)
T KOG1201|consen 49 GLGRLIALEFAKRGAKLVLWDINKQ 73 (300)
T ss_pred hHHHHHHHHHHHhCCeEEEEecccc
Confidence 5999999999999999999997653
No 400
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=35.03 E-value=34 Score=25.17 Aligned_cols=24 Identities=13% Similarity=-0.076 Sum_probs=21.0
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.||...++.++..|+ +|++.++.
T Consensus 201 G~vG~~a~~lak~~G~~~Vi~~~~~ 225 (371)
T cd08281 201 GGVGLSALLGAVAAGASQVVAVDLN 225 (371)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEcCC
Confidence 7899999999999999 58888754
No 401
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=35.01 E-value=35 Score=24.47 Aligned_cols=23 Identities=4% Similarity=-0.321 Sum_probs=19.4
Q ss_pred cchHHHHHHHHhhcCCE-EEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r 106 (109)
|.||...++.++.+|++ |++.|+
T Consensus 154 G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 154 GTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CHHHHHHHHHHHHcCCceEEEeCC
Confidence 78999999999999998 555554
No 402
>PRK08219 short chain dehydrogenase; Provisional
Probab=35.00 E-value=30 Score=22.99 Aligned_cols=24 Identities=4% Similarity=-0.087 Sum_probs=20.3
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.||+.+++.|..- .+|+..+|.
T Consensus 12 ~g~iG~~l~~~l~~~-~~V~~~~r~ 35 (227)
T PRK08219 12 SRGIGAAIARELAPT-HTLLLGGRP 35 (227)
T ss_pred CcHHHHHHHHHHHhh-CCEEEEeCC
Confidence 478999999998866 889998875
No 403
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=34.96 E-value=40 Score=24.25 Aligned_cols=25 Identities=4% Similarity=-0.209 Sum_probs=21.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.+|+.+++.++.+|++|++.++.
T Consensus 174 ~g~vg~~~~~~a~~~G~~vi~~~~~ 198 (345)
T cd08260 174 CGGVGLSAVMIASALGARVIAVDID 198 (345)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4789999999999999999887653
No 404
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=34.76 E-value=40 Score=24.00 Aligned_cols=23 Identities=4% Similarity=-0.100 Sum_probs=20.5
Q ss_pred cchHHHHHHHHhhc-CCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLAS-IMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~f-g~~V~~~~r 106 (109)
|.+|+..+++++.+ |++|++.++
T Consensus 159 g~vg~~~~~~ak~~~G~~vi~~~~ 182 (336)
T TIGR02817 159 GGVGSILIQLARQLTGLTVIATAS 182 (336)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcC
Confidence 78999999999998 999988754
No 405
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=34.39 E-value=52 Score=23.52 Aligned_cols=26 Identities=4% Similarity=-0.254 Sum_probs=21.2
Q ss_pred hhccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 81 ELITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 81 ~l~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.-.|-||+.+++.|..-|.+|.+..|
T Consensus 12 GatG~iG~~l~~~L~~~g~~V~~~~r 37 (322)
T PLN02986 12 GASGYIASWIVKLLLLRGYTVKATVR 37 (322)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 33578999999999988999986544
No 406
>PLN02686 cinnamoyl-CoA reductase
Probab=34.07 E-value=45 Score=24.70 Aligned_cols=23 Identities=9% Similarity=-0.100 Sum_probs=20.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|-||+.+++.|..-|.+|.+..+
T Consensus 63 GfIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 63 SFLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred hHHHHHHHHHHHHCCCEEEEEeC
Confidence 67999999999999999987544
No 407
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=34.05 E-value=40 Score=23.52 Aligned_cols=24 Identities=13% Similarity=-0.046 Sum_probs=21.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.+++.+++.|.+|+..++.
T Consensus 155 ~~~g~~~~~~~~~~g~~v~~~~~~ 178 (328)
T cd08268 155 SSVGLAAIQIANAAGATVIATTRT 178 (328)
T ss_pred cHHHHHHHHHHHHcCCEEEEEcCC
Confidence 689999999999999999887654
No 408
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=33.81 E-value=42 Score=24.61 Aligned_cols=23 Identities=4% Similarity=-0.178 Sum_probs=20.5
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|...++.++..|.+|+..++
T Consensus 190 G~vG~~av~~Ak~~G~~vi~~~~ 212 (357)
T PLN02514 190 GGVGHMGVKIAKAMGHHVTVISS 212 (357)
T ss_pred cHHHHHHHHHHHHCCCeEEEEeC
Confidence 78999999999999999887764
No 409
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=33.80 E-value=37 Score=26.86 Aligned_cols=24 Identities=4% Similarity=-0.112 Sum_probs=21.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|++++..|...|++|+.++|.
T Consensus 388 GGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 388 GGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCC
Confidence 679999999999999999999885
No 410
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=33.69 E-value=34 Score=23.64 Aligned_cols=24 Identities=13% Similarity=-0.206 Sum_probs=21.1
Q ss_pred cchHHHHHHHHhhcCCE-EEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r~ 107 (109)
|.+|..+++.++.+|.+ |++.++.
T Consensus 107 g~vg~~~i~~a~~~g~~~vi~~~~~ 131 (277)
T cd08255 107 GLVGLLAAQLAKAAGAREVVGVDPD 131 (277)
T ss_pred CHHHHHHHHHHHHcCCCcEEEECCC
Confidence 78999999999999999 8887753
No 411
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=33.66 E-value=51 Score=23.01 Aligned_cols=23 Identities=13% Similarity=-0.185 Sum_probs=20.4
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|+.+++.++..|++|+..++
T Consensus 154 g~~g~~~~~la~~~g~~v~~~~~ 176 (319)
T cd08267 154 GGVGTFAVQIAKALGAHVTGVCS 176 (319)
T ss_pred cHHHHHHHHHHHHcCCEEEEEeC
Confidence 67999999999999999987653
No 412
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=33.48 E-value=39 Score=24.87 Aligned_cols=24 Identities=0% Similarity=-0.183 Sum_probs=20.9
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.+|..+++.++++|. +|++.|+.
T Consensus 186 g~vg~~~~~~a~~~G~~~vi~~~~~ 210 (375)
T cd08282 186 GPVGLMAAYSAILRGASRVYVVDHV 210 (375)
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 7899999999999997 78887653
No 413
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=33.26 E-value=43 Score=22.72 Aligned_cols=25 Identities=4% Similarity=-0.191 Sum_probs=21.4
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|.+|+.+++.++++|.+|+..++.
T Consensus 114 ~~~~g~~~~~~a~~~g~~v~~~~~~ 138 (288)
T smart00829 114 AGGVGQAAIQLAQHLGAEVFATAGS 138 (288)
T ss_pred CcHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3789999999999999999887653
No 414
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=33.19 E-value=49 Score=21.32 Aligned_cols=20 Identities=0% Similarity=-0.019 Sum_probs=15.1
Q ss_pred HHHHHHhhcCCEEEEEcccc
Q psy15800 89 NHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 89 ~va~~~~~fg~~V~~~~r~~ 108 (109)
.+|+.|+..|++|++.|-..
T Consensus 27 ~vA~~L~~~G~dV~~tDi~~ 46 (127)
T PF03686_consen 27 EVAKKLKERGFDVIATDINP 46 (127)
T ss_dssp HHHHHHHHHS-EEEEE-SS-
T ss_pred HHHHHHHHcCCcEEEEECcc
Confidence 58999999999999998653
No 415
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=33.11 E-value=41 Score=25.85 Aligned_cols=25 Identities=8% Similarity=-0.185 Sum_probs=21.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.|.+|..+|..+.. +.+|++||+..
T Consensus 14 lGyvGlpmA~~la~-~~~V~g~D~~~ 38 (425)
T PRK15182 14 LGYVGLPLAVEFGK-SRQVVGFDVNK 38 (425)
T ss_pred cCcchHHHHHHHhc-CCEEEEEeCCH
Confidence 48999999999876 79999999864
No 416
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=32.82 E-value=41 Score=24.86 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=21.4
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.+|..+++.++..|. +|++.++.
T Consensus 200 g~vG~~~~~~a~~~G~~~Vi~~~~~ 224 (373)
T cd08299 200 GGVGLSAIMGCKAAGASRIIAVDIN 224 (373)
T ss_pred CHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 7899999999999999 79988764
No 417
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=32.69 E-value=42 Score=23.81 Aligned_cols=24 Identities=13% Similarity=-0.130 Sum_probs=21.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.++++++.+|.+|++.++.
T Consensus 175 g~vG~~~~~la~~~G~~V~~~~~s 198 (338)
T cd08254 175 GGLGLNAVQIAKAMGAAVIAVDIK 198 (338)
T ss_pred cHHHHHHHHHHHHcCCEEEEEcCC
Confidence 679999999999999999887653
No 418
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=32.59 E-value=45 Score=23.55 Aligned_cols=23 Identities=13% Similarity=-0.036 Sum_probs=20.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|+.+++.++..|++|+..++
T Consensus 151 g~~g~~~~~~a~~~g~~v~~~~~ 173 (334)
T PTZ00354 151 SGVGTAAAQLAEKYGAATIITTS 173 (334)
T ss_pred chHHHHHHHHHHHcCCEEEEEeC
Confidence 68999999999999999876654
No 419
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=32.43 E-value=58 Score=22.23 Aligned_cols=24 Identities=8% Similarity=-0.025 Sum_probs=21.6
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.+|..+|..|...|. +|+.+|+.
T Consensus 30 GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 30 GGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 7899999999999999 69999875
No 420
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=32.27 E-value=56 Score=24.79 Aligned_cols=27 Identities=11% Similarity=-0.041 Sum_probs=23.3
Q ss_pred hccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 82 LITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 82 l~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
+..+-...+++.|..-|.+|.+|||..
T Consensus 313 ~R~Sp~~~i~~~L~~~G~~v~~~DP~~ 339 (388)
T PRK15057 313 FRASSIQGIMKRIKAKGVEVIIYEPVM 339 (388)
T ss_pred cccChHHHHHHHHHhCCCEEEEECCCC
Confidence 334678999999999999999999974
No 421
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=32.24 E-value=50 Score=27.40 Aligned_cols=25 Identities=12% Similarity=-0.101 Sum_probs=22.2
Q ss_pred ccchHHHH-HHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNH-TQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~v-a~~~~~fg~~V~~~~r~ 107 (109)
.|.+|... |+.|+..|.+|.++|..
T Consensus 12 ~G~sG~salA~~L~~~G~~V~~sD~~ 37 (809)
T PRK14573 12 IGGIGMSALAHILLDRGYSVSGSDLS 37 (809)
T ss_pred ecHHhHHHHHHHHHHCCCeEEEECCC
Confidence 47899997 99999999999999953
No 422
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=32.13 E-value=46 Score=23.13 Aligned_cols=24 Identities=13% Similarity=-0.089 Sum_probs=21.0
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.+++.++..|.+|+..++.
T Consensus 150 ~~~g~~~~~~a~~~g~~v~~~~~~ 173 (325)
T TIGR02824 150 SGIGTTAIQLAKAFGARVFTTAGS 173 (325)
T ss_pred chHHHHHHHHHHHcCCEEEEEeCC
Confidence 679999999999999999887653
No 423
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.11 E-value=69 Score=23.64 Aligned_cols=24 Identities=4% Similarity=-0.103 Sum_probs=21.2
Q ss_pred chHHHHHHHHhhcCCEEEEEcccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
.+|+.+|.+|..-|.+|..|++..
T Consensus 170 ivG~PmA~~L~~~gatVtv~~~~t 193 (301)
T PRK14194 170 IVGKPMAALLLQAHCSVTVVHSRS 193 (301)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCC
Confidence 579999999999999999997653
No 424
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=31.82 E-value=64 Score=21.85 Aligned_cols=22 Identities=5% Similarity=-0.204 Sum_probs=18.7
Q ss_pred ccchHHHHHHHHhhcCCEEEEE
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYS 104 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~ 104 (109)
.|.||+.+++.+..-|++|+..
T Consensus 11 s~giG~~la~~l~~~g~~v~~~ 32 (248)
T PRK06947 11 SRGIGRATAVLAAARGWSVGIN 32 (248)
T ss_pred CCcHHHHHHHHHHHCCCEEEEE
Confidence 4789999999999899998754
No 425
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=31.50 E-value=59 Score=22.46 Aligned_cols=23 Identities=9% Similarity=-0.112 Sum_probs=20.5
Q ss_pred cchHHHHHHHHhhcCC-EEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r 106 (109)
|.+|.++|+.|...|. ++..+|+
T Consensus 30 GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 30 GGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 7899999999999998 7888875
No 426
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=31.32 E-value=46 Score=24.04 Aligned_cols=24 Identities=8% Similarity=-0.168 Sum_probs=20.8
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.+|+..++.++.+|+ +|++.++.
T Consensus 182 g~vG~~a~q~a~~~G~~~v~~~~~~ 206 (351)
T cd08233 182 GPIGLLTILALKAAGASKIIVSEPS 206 (351)
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 7899999999999999 78887653
No 427
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=31.06 E-value=61 Score=23.21 Aligned_cols=23 Identities=13% Similarity=-0.171 Sum_probs=20.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|+.+++.+++.|++|++.++
T Consensus 173 g~ig~~~~~~a~~~G~~v~~~~~ 195 (350)
T cd08248 173 GGVGTFAIQLLKAWGAHVTTTCS 195 (350)
T ss_pred ChHHHHHHHHHHHCCCeEEEEeC
Confidence 78999999999999999887653
No 428
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=30.98 E-value=46 Score=23.85 Aligned_cols=23 Identities=9% Similarity=-0.101 Sum_probs=20.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|+.++++++.+|.+|++..+
T Consensus 169 g~vG~~a~~lA~~~g~~v~~~~~ 191 (337)
T cd08261 169 GPIGLGVIQVAKARGARVIVVDI 191 (337)
T ss_pred CHHHHHHHHHHHHcCCeEEEECC
Confidence 67999999999999999987754
No 429
>KOG1208|consensus
Probab=30.60 E-value=54 Score=24.19 Aligned_cols=23 Identities=4% Similarity=-0.109 Sum_probs=20.9
Q ss_pred chHHHHHHHHhhcCCEEEEEccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.||+++|+.|..-|++|+...|.
T Consensus 46 GIG~eta~~La~~Ga~Vv~~~R~ 68 (314)
T KOG1208|consen 46 GIGFETARELALRGAHVVLACRN 68 (314)
T ss_pred chHHHHHHHHHhCCCEEEEEeCC
Confidence 69999999999999999988765
No 430
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=30.56 E-value=70 Score=20.93 Aligned_cols=26 Identities=8% Similarity=-0.183 Sum_probs=22.5
Q ss_pred hccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 82 LITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 82 l~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
..+++.+.++..+..||+++..+.|.
T Consensus 11 ~~~rv~~Sl~~~~~~~g~~~~~~~P~ 36 (158)
T PF00185_consen 11 GHNRVAHSLIELLAKFGMEVVLIAPE 36 (158)
T ss_dssp TTSHHHHHHHHHHHHTTSEEEEESSG
T ss_pred CCChHHHHHHHHHHHcCCEEEEECCC
Confidence 45789999999999999999888774
No 431
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=30.42 E-value=64 Score=23.40 Aligned_cols=25 Identities=0% Similarity=-0.142 Sum_probs=19.9
Q ss_pred ccchHHHHHHHHhhcCCEE--EEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQL--VYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V--~~~~r~ 107 (109)
.|.||+.+|+.++.-|..| +++|+.
T Consensus 11 ~GliG~s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 11 LGLMGGSLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred CchHHHHHHHHHHHcCCeEEEEeecCc
Confidence 5899999999999888766 555553
No 432
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=29.96 E-value=54 Score=23.45 Aligned_cols=24 Identities=4% Similarity=-0.151 Sum_probs=20.7
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.+|+.++++++.+|. +|++.++.
T Consensus 175 g~vG~~~~~lak~~G~~~v~~~~~s 199 (339)
T cd08232 175 GPIGALVVAAARRAGAAEIVATDLA 199 (339)
T ss_pred CHHHHHHHHHHHHcCCcEEEEECCC
Confidence 7899999999999999 78887653
No 433
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=29.88 E-value=46 Score=21.18 Aligned_cols=24 Identities=8% Similarity=-0.100 Sum_probs=20.7
Q ss_pred cchHHHHHHHHhhcCCEEEEE-ccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYS-TCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~-~r~ 107 (109)
|+.|+.+++.|+.-|..|..+ +|.
T Consensus 19 GrVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 19 GRVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp SCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred CHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 899999999999999998765 554
No 434
>KOG0022|consensus
Probab=29.80 E-value=54 Score=24.79 Aligned_cols=24 Identities=4% Similarity=-0.155 Sum_probs=21.6
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.+|.++++-+++.|+ +|++.|-.
T Consensus 202 G~VGLav~~Gaka~GAsrIIgvDiN 226 (375)
T KOG0022|consen 202 GGVGLAVAMGAKAAGASRIIGVDIN 226 (375)
T ss_pred chHHHHHHHhHHhcCcccEEEEecC
Confidence 6799999999999998 79999854
No 435
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=29.77 E-value=65 Score=22.87 Aligned_cols=24 Identities=13% Similarity=-0.225 Sum_probs=21.1
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|+.+++.++..|.+|++.++.
T Consensus 177 g~vg~~~~~la~~~g~~v~~~~~~ 200 (329)
T cd08298 177 GASAHLALQIARYQGAEVFAFTRS 200 (329)
T ss_pred cHHHHHHHHHHHHCCCeEEEEcCC
Confidence 789999999999999999887653
No 436
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=29.68 E-value=55 Score=18.60 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=20.6
Q ss_pred CCCceEEEecC-ccCCcccHHHHhhcCcEEEe
Q psy15800 6 GENLKVISTFS-VGHDHLHLDQIKSRGIRVGT 36 (109)
Q Consensus 6 ~p~Lk~i~~~~-~G~d~id~~~~~~~gi~v~n 36 (109)
.|.+-+|+--+ .|.|.+-...+.++||.+..
T Consensus 31 ~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~ 62 (71)
T PF10686_consen 31 HPDMVLVHGGAPKGADRIAARWARERGVPVIR 62 (71)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCeeEE
Confidence 45666555555 57777777777777776654
No 437
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=29.67 E-value=44 Score=24.17 Aligned_cols=24 Identities=8% Similarity=-0.188 Sum_probs=20.4
Q ss_pred cchHHHHHHHHhhcCCE-EEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r~ 107 (109)
|.+|...++.++.+|.+ |++.++.
T Consensus 170 g~vG~~~~~~a~~~G~~~v~~~~~~ 194 (347)
T PRK10309 170 GTIGLLAIQCAVALGAKSVTAIDIN 194 (347)
T ss_pred CHHHHHHHHHHHHcCCCeEEEECCC
Confidence 78999999999999997 6777653
No 438
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.65 E-value=55 Score=25.26 Aligned_cols=23 Identities=0% Similarity=-0.038 Sum_probs=20.7
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|+-|+++++.|+. |.+|+.+|.
T Consensus 14 ~G~sG~a~~~~L~~-g~~v~v~D~ 36 (454)
T PRK01368 14 LGKTGISVYEELQN-KYDVIVYDD 36 (454)
T ss_pred ecHHHHHHHHHHhC-CCEEEEECC
Confidence 48899999999996 999999984
No 439
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=29.57 E-value=77 Score=18.15 Aligned_cols=20 Identities=0% Similarity=-0.225 Sum_probs=16.7
Q ss_pred HHHHHHHhhcCCEEEEEccc
Q psy15800 88 TNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 88 ~~va~~~~~fg~~V~~~~r~ 107 (109)
..+|+.|..-|..|.++|-.
T Consensus 33 ~~~a~~L~~~G~~V~~~D~r 52 (79)
T PF12146_consen 33 AHLAEFLAEQGYAVFAYDHR 52 (79)
T ss_pred HHHHHHHHhCCCEEEEECCC
Confidence 35888999999999999853
No 440
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=29.56 E-value=72 Score=22.19 Aligned_cols=23 Identities=9% Similarity=-0.097 Sum_probs=20.4
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|+.+++.++.+|++|+..++
T Consensus 155 ~~~g~~~~~~a~~~g~~v~~~~~ 177 (326)
T cd08272 155 GGVGHVAVQLAKAAGARVYATAS 177 (326)
T ss_pred CcHHHHHHHHHHHcCCEEEEEec
Confidence 67999999999999999987654
No 441
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=29.35 E-value=51 Score=23.72 Aligned_cols=23 Identities=9% Similarity=-0.188 Sum_probs=19.9
Q ss_pred cchHHHHHHHHhhcCC-EEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r 106 (109)
|.+|+.++++++.+|+ +|++.++
T Consensus 173 g~vg~~~~~la~~~G~~~v~~~~~ 196 (341)
T cd05281 173 GPIGLMAIAVAKAAGASLVIASDP 196 (341)
T ss_pred CHHHHHHHHHHHHcCCcEEEEECC
Confidence 7899999999999999 6877643
No 442
>PLN00203 glutamyl-tRNA reductase
Probab=29.33 E-value=43 Score=26.56 Aligned_cols=25 Identities=4% Similarity=-0.059 Sum_probs=21.9
Q ss_pred cchHHHHHHHHhhcCC-EEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~~ 108 (109)
|.+|+.+++.|...|. +|+.++|+.
T Consensus 275 G~mG~~~a~~L~~~G~~~V~V~nRs~ 300 (519)
T PLN00203 275 GKMGKLLVKHLVSKGCTKMVVVNRSE 300 (519)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 6799999999999997 699999864
No 443
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=29.26 E-value=67 Score=22.99 Aligned_cols=23 Identities=4% Similarity=-0.176 Sum_probs=20.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|+.+++.++..|.+|++.+.
T Consensus 188 g~ig~~~~~~a~~~g~~vi~~~~ 210 (350)
T cd08274 188 GGVGSALVQLAKRRGAIVIAVAG 210 (350)
T ss_pred cHHHHHHHHHHHhcCCEEEEEeC
Confidence 78999999999999999887653
No 444
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=29.13 E-value=1.1e+02 Score=16.90 Aligned_cols=24 Identities=4% Similarity=-0.195 Sum_probs=19.3
Q ss_pred chHHHHHHHHhhcCCEEEEEcccc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
--|-..|..|+.-|.+|..+++..
T Consensus 6 ~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 6 ISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHHCCCcEEEEecCc
Confidence 357778888888899999998754
No 445
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=29.00 E-value=59 Score=24.28 Aligned_cols=23 Identities=4% Similarity=-0.051 Sum_probs=19.6
Q ss_pred hHHHHHHHHhhcCCEEEEEcccc
Q psy15800 86 SDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 86 IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
=|..+|..|..-|.+|++|||..
T Consensus 31 gG~~MA~~La~aG~~V~v~Dr~~ 53 (342)
T PRK12557 31 GGSRMAIEFAEAGHDVVLAEPNR 53 (342)
T ss_pred CHHHHHHHHHhCCCeEEEEECCH
Confidence 38889999988899999999864
No 446
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=28.02 E-value=72 Score=24.50 Aligned_cols=25 Identities=0% Similarity=-0.229 Sum_probs=22.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
..+-+..+++.|..-|.+|.+|||+
T Consensus 332 R~Spa~~ii~~L~~~g~~V~~~DP~ 356 (425)
T PRK15182 332 RNTRIIDVVKELGKYSCKVDIFDPW 356 (425)
T ss_pred ccCcHHHHHHHHHhCCCEEEEECCC
Confidence 3467999999999999999999997
No 447
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.76 E-value=86 Score=22.95 Aligned_cols=22 Identities=5% Similarity=-0.102 Sum_probs=19.9
Q ss_pred hHHHHHHHHhhcCCEEEEEccc
Q psy15800 86 SDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 86 IG~~va~~~~~fg~~V~~~~r~ 107 (109)
+|+.+|.+|...|++|+.+++.
T Consensus 170 VG~pla~lL~~~gatVtv~~s~ 191 (286)
T PRK14175 170 VGQPVSKLLLQKNASVTILHSR 191 (286)
T ss_pred hHHHHHHHHHHCCCeEEEEeCC
Confidence 8999999999999999988764
No 448
>PF05675 DUF817: Protein of unknown function (DUF817); InterPro: IPR008535 This family consists of several bacterial proteins of unknown function.
Probab=27.36 E-value=66 Score=22.89 Aligned_cols=22 Identities=0% Similarity=-0.195 Sum_probs=19.4
Q ss_pred chHHHHHHHHhhcCCEEEEEcc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r 106 (109)
.+|+-++|..+-|++++.-|-|
T Consensus 108 aVGSYi~rawR~fdlr~~~~P~ 129 (235)
T PF05675_consen 108 AVGSYIARAWRLFDLRFTRYPP 129 (235)
T ss_pred HHHHHHHHHHHHhheehhCCCc
Confidence 6999999999999999877654
No 449
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=27.32 E-value=59 Score=23.36 Aligned_cols=23 Identities=0% Similarity=-0.148 Sum_probs=20.3
Q ss_pred cchHHHHHHHHhhcC-CEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASI-MQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg-~~V~~~~r 106 (109)
|.+|+.++++++.+| .+|+++++
T Consensus 176 g~~g~~~~~~a~~~G~~~v~~~~~ 199 (345)
T cd08286 176 GPVGLAALLTAQLYSPSKIIMVDL 199 (345)
T ss_pred CHHHHHHHHHHHHcCCCeEEEEcC
Confidence 789999999999999 68888765
No 450
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=27.31 E-value=66 Score=26.06 Aligned_cols=24 Identities=4% Similarity=-0.050 Sum_probs=20.7
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|+||+++++++..++. +|+.+|+.
T Consensus 260 GSiGsel~~qil~~~p~~i~l~~~~ 284 (588)
T COG1086 260 GSIGSELCRQILKFNPKEIILFSRD 284 (588)
T ss_pred CcHHHHHHHHHHhcCCCEEEEecCc
Confidence 7899999999999998 57777764
No 451
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=27.29 E-value=60 Score=25.55 Aligned_cols=22 Identities=5% Similarity=-0.049 Sum_probs=20.6
Q ss_pred cchHHHHHHHHhhcCCEEEEEc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~ 105 (109)
|+.|.++|+.+...|.+|+++.
T Consensus 282 GkmG~alA~aa~~~GA~VtlI~ 303 (475)
T PRK13982 282 GKQGFAIAAAAAAAGAEVTLIS 303 (475)
T ss_pred hHHHHHHHHHHHHCCCcEEEEe
Confidence 8999999999999999999875
No 452
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=27.21 E-value=63 Score=22.50 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=21.7
Q ss_pred cchHHHHHHHHhhcCCE---EEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQ---LVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~---V~~~~r~ 107 (109)
|..|+.++..+...|++ |..+||+
T Consensus 34 GgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 34 GAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred hHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 78999999999999985 8899987
No 453
>COG3395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.82 E-value=74 Score=24.64 Aligned_cols=28 Identities=7% Similarity=-0.154 Sum_probs=23.7
Q ss_pred hhhccchHHHHHHHHhhcCCEEEEEccc
Q psy15800 80 TELITQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 80 ~~l~G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.++.|+||.++--++.++|.++..+.|-
T Consensus 87 ST~~GNIG~~~dal~~alg~~~avv~PA 114 (413)
T COG3395 87 STLRGNIGPETDALLDALGFSIAVVVPA 114 (413)
T ss_pred CCCCCCccHHHHHHHHhcCCCceEEecC
Confidence 4567999999999999999888777664
No 454
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=26.66 E-value=92 Score=22.33 Aligned_cols=27 Identities=4% Similarity=-0.192 Sum_probs=20.3
Q ss_pred hhccchHHHHHHHHhhcCC-EEEEEcccc
Q psy15800 81 ELITQSDTNHTQRCLASIM-QLVYSTCYN 108 (109)
Q Consensus 81 ~l~G~IG~~va~~~~~fg~-~V~~~~r~~ 108 (109)
+..|+|| .+||.++-||. +...++|..
T Consensus 13 ~~~gNIG-~vARaMKNfGl~eL~LV~Pr~ 40 (242)
T COG0565 13 SHPGNIG-SVARAMKNFGLSELRLVNPRA 40 (242)
T ss_pred CCCccHH-HHHHHHHhCCcceEEEECCCC
Confidence 3458898 48999999998 566667653
No 455
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=26.66 E-value=78 Score=24.80 Aligned_cols=26 Identities=8% Similarity=-0.090 Sum_probs=22.9
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
..+-...+++.|...|.+|.+|||+.
T Consensus 342 R~Spa~~li~~L~~~G~~V~~~DP~v 367 (473)
T PLN02353 342 RETPAIDVCKGLLGDKAKLSIYDPQV 367 (473)
T ss_pred ccChHHHHHHHHHhCCCEEEEECCCC
Confidence 35678999999999999999999973
No 456
>PLN02827 Alcohol dehydrogenase-like
Probab=26.34 E-value=62 Score=24.02 Aligned_cols=23 Identities=4% Similarity=-0.146 Sum_probs=19.8
Q ss_pred cchHHHHHHHHhhcCCE-EEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r 106 (109)
|.+|...++.++.+|++ |++.++
T Consensus 203 G~vG~~~iqlak~~G~~~vi~~~~ 226 (378)
T PLN02827 203 GTVGLSVAQGAKLRGASQIIGVDI 226 (378)
T ss_pred CHHHHHHHHHHHHcCCCeEEEECC
Confidence 78999999999999995 777764
No 457
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=26.08 E-value=63 Score=23.11 Aligned_cols=23 Identities=0% Similarity=-0.273 Sum_probs=19.9
Q ss_pred cchHHHHHHHHhhcCC-EEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r 106 (109)
|.+|+.+++.++.+|+ +|++.++
T Consensus 177 g~vg~~~~~~a~~~g~~~v~~~~~ 200 (344)
T cd08284 177 GPVGLCAVLSAQVLGAARVFAVDP 200 (344)
T ss_pred cHHHHHHHHHHHHcCCceEEEEcC
Confidence 7899999999999997 7887653
No 458
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=25.97 E-value=85 Score=22.43 Aligned_cols=24 Identities=8% Similarity=-0.161 Sum_probs=20.7
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|..+++.+++.|.+|+..++.
T Consensus 176 ~~vg~~~~~~a~~~g~~v~~~~~~ 199 (341)
T cd08297 176 GGLGHLGVQYAKAMGLRVIAIDVG 199 (341)
T ss_pred chHHHHHHHHHHHCCCeEEEEeCC
Confidence 469999999999999999887653
No 459
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=25.88 E-value=56 Score=23.43 Aligned_cols=25 Identities=0% Similarity=-0.270 Sum_probs=20.8
Q ss_pred ccchHHHHHHHHhhcCCE-EEEEccc
Q psy15800 83 ITQSDTNHTQRCLASIMQ-LVYSTCY 107 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~-V~~~~r~ 107 (109)
.|.+|+.+++++++.|.+ |+..++.
T Consensus 177 ~g~vg~~~~~lak~~G~~~v~~~~~~ 202 (345)
T cd08287 177 DGAVGLCAVLAAKRLGAERIIAMSRH 202 (345)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 378999999999999996 7777654
No 460
>KOG3553|consensus
Probab=25.64 E-value=52 Score=20.53 Aligned_cols=41 Identities=27% Similarity=0.216 Sum_probs=30.2
Q ss_pred CCceEEEecCccCCcccHH---HHhhcCcEEEecCCCCccchHH
Q psy15800 7 ENLKVISTFSVGHDHLHLD---QIKSRGIRVGTVGPVSSDAVAE 47 (109)
Q Consensus 7 p~Lk~i~~~~~G~d~id~~---~~~~~gi~v~n~~g~~~~~vAE 47 (109)
.+|++=...+.|+|+-... ...+.||-|+|+...++..+|-
T Consensus 33 e~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG 76 (124)
T KOG3553|consen 33 ENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG 76 (124)
T ss_pred EEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc
Confidence 4678888899999875322 2557899999987766766654
No 461
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=25.13 E-value=85 Score=23.89 Aligned_cols=24 Identities=0% Similarity=-0.125 Sum_probs=21.5
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|-++|..+..+|.+|..+++.
T Consensus 181 G~~g~E~A~~l~~~g~~Vtli~~~ 204 (462)
T PRK06416 181 GYIGVEFASAYASLGAEVTIVEAL 204 (462)
T ss_pred CHHHHHHHHHHHHcCCeEEEEEcC
Confidence 679999999999999999988764
No 462
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=24.71 E-value=69 Score=23.69 Aligned_cols=23 Identities=4% Similarity=-0.163 Sum_probs=20.5
Q ss_pred cchHHHHHHHHhhcCC-EEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r 106 (109)
|.+|...++.++..|. +|++.++
T Consensus 213 g~vG~~ai~lA~~~G~~~vi~~~~ 236 (384)
T cd08265 213 GPIGLAAIALAKAAGASKVIAFEI 236 (384)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 7899999999999999 6888765
No 463
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=24.14 E-value=91 Score=23.77 Aligned_cols=26 Identities=0% Similarity=-0.289 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHhhcC-CEEEEEcccc
Q psy15800 83 ITQSDTNHTQRCLASI-MQLVYSTCYN 108 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg-~~V~~~~r~~ 108 (109)
..+-...+++.|...| .+|.+|||..
T Consensus 338 r~Sp~~~l~~~L~~~gg~~v~~~DP~~ 364 (415)
T PRK11064 338 RESPAMEIAELIAQWHSGETLVVEPNI 364 (415)
T ss_pred hhChHHHHHHHHHhcCCcEEEEECCCC
Confidence 3467899999999996 9999999973
No 464
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=23.96 E-value=71 Score=22.78 Aligned_cols=24 Identities=8% Similarity=-0.202 Sum_probs=20.4
Q ss_pred cchHHHHHHHHhhcC-CEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASI-MQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg-~~V~~~~r~ 107 (109)
|.+|+.+++.++..| .+|+..++.
T Consensus 177 ~~vg~~~~~~a~~~g~~~v~~~~~~ 201 (340)
T cd05284 177 GGLGHIAVQILRALTPATVIAVDRS 201 (340)
T ss_pred cHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 569999999999999 899877653
No 465
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=23.75 E-value=73 Score=18.95 Aligned_cols=23 Identities=4% Similarity=-0.031 Sum_probs=20.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~ 105 (109)
.|+||.....+|+..|.+|+...
T Consensus 67 ~~~iG~~a~~~L~~~GI~v~~~~ 89 (102)
T cd00853 67 CAAIGGPAAARLVRAGIHPIKVP 89 (102)
T ss_pred EhhcChhHHHHHHHcCCEEEEcC
Confidence 48999999999999999998543
No 466
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=23.73 E-value=99 Score=21.35 Aligned_cols=22 Identities=9% Similarity=-0.026 Sum_probs=19.6
Q ss_pred chHHHHHHHHhhcCCEEEEEcc
Q psy15800 85 QSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 85 ~IG~~va~~~~~fg~~V~~~~r 106 (109)
.+.+.+|+.|+.-|..|+++|-
T Consensus 16 ~~d~~~a~~l~~~G~~VvGvds 37 (192)
T PF06057_consen 16 DLDKQIAEALAKQGVPVVGVDS 37 (192)
T ss_pred hhhHHHHHHHHHCCCeEEEech
Confidence 4778999999999999999984
No 467
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=23.66 E-value=72 Score=23.29 Aligned_cols=23 Identities=9% Similarity=-0.099 Sum_probs=20.0
Q ss_pred cchHHHHHHHHhhcCCE-EEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r 106 (109)
|.+|+.++++++.+|.+ |++.++
T Consensus 192 g~vG~a~i~lak~~G~~~Vi~~~~ 215 (363)
T cd08279 192 GGVGLNAIQGARIAGASRIIAVDP 215 (363)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEcC
Confidence 78999999999999997 877654
No 468
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=23.60 E-value=76 Score=23.23 Aligned_cols=24 Identities=0% Similarity=-0.169 Sum_probs=20.5
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.+|...++.++++|. .|++.++.
T Consensus 196 g~vG~~~~~la~~~G~~~v~~~~~~ 220 (365)
T cd08278 196 GAVGLAAVMAAKIAGCTTIIAVDIV 220 (365)
T ss_pred CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 7899999999999999 48877653
No 469
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=23.31 E-value=95 Score=23.11 Aligned_cols=24 Identities=4% Similarity=-0.064 Sum_probs=21.4
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.+|..+|+.|...|. +|..+|+-
T Consensus 33 GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 33 GALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 7899999999999998 88888863
No 470
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.14 E-value=1.1e+02 Score=22.35 Aligned_cols=21 Identities=5% Similarity=-0.099 Sum_probs=18.8
Q ss_pred hHHHHHHHHhhcCCEEEEEcc
Q psy15800 86 SDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 86 IG~~va~~~~~fg~~V~~~~r 106 (109)
+|+-++.+|...|++|+.+..
T Consensus 170 VGkPla~lL~~~~atVt~~hs 190 (285)
T PRK14189 170 VGKPMAMLLLQAGATVTICHS 190 (285)
T ss_pred cHHHHHHHHHHCCCEEEEecC
Confidence 599999999999999988754
No 471
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=23.09 E-value=1.1e+02 Score=21.08 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=20.3
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|..++..++..|.+|+..++
T Consensus 155 g~~g~~~~~~a~~~g~~v~~~~~ 177 (309)
T cd05289 155 GGVGSFAVQLAKARGARVIATAS 177 (309)
T ss_pred chHHHHHHHHHHHcCCEEEEEec
Confidence 67999999999999999887654
No 472
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=23.08 E-value=79 Score=22.83 Aligned_cols=24 Identities=0% Similarity=-0.234 Sum_probs=20.3
Q ss_pred cchHHHHHHHHhhcCCE-EEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r~ 107 (109)
|.+|+.+++.++..|.+ |+..++.
T Consensus 176 g~iG~~~~~lak~~G~~~v~~~~~~ 200 (351)
T cd08285 176 GPVGLMAVAGARLRGAGRIIAVGSR 200 (351)
T ss_pred CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 78999999999999995 7777653
No 473
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=23.08 E-value=2.5e+02 Score=21.42 Aligned_cols=81 Identities=14% Similarity=0.180 Sum_probs=41.4
Q ss_pred HHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHH--HHcCCCCcccchhhhhccc--------hHHHHHHH
Q psy15800 24 LDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC--IASGTEKSQQHAITELITQ--------SDTNHTQR 93 (109)
Q Consensus 24 ~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~--~~~g~w~~~~~~~~~l~G~--------IG~~va~~ 93 (109)
.+.+.++||++.....+-...+.++.-.+.=.+-+..+...+. .+...+...-.....+.|+ .--.+++.
T Consensus 219 a~~Le~~GvP~~~~~piG~~~td~~l~~la~~~g~~~~~~e~~~~~e~~~~~~~ld~~~~l~gkv~v~g~~~~~~~la~~ 298 (416)
T cd01980 219 IRELEEAGRPIVSGAPVGADGTAAWLEAVGEALGLDMDQVRKVANEEKAAAKGAIRAFSPIKGRVLVSGYEGNELLVARL 298 (416)
T ss_pred HHHHHHcCCceecCCCcCchHHHHHHHHHHHHhCcCchhHHHHHHHHHHHHHHHHhhHHhhCceEEEECCCchhHHHHHH
Confidence 4456677999875444445566666655554555555522222 2222221100000011121 12448999
Q ss_pred HhhcCCEEEEE
Q psy15800 94 CLASIMQLVYS 104 (109)
Q Consensus 94 ~~~fg~~V~~~ 104 (109)
|..+||+|.+.
T Consensus 299 L~elGmevv~~ 309 (416)
T cd01980 299 LIESGAEVPYV 309 (416)
T ss_pred HHHcCCEEEEE
Confidence 99999998874
No 474
>PRK07846 mycothione reductase; Reviewed
Probab=22.87 E-value=1e+02 Score=23.62 Aligned_cols=24 Identities=4% Similarity=-0.171 Sum_probs=21.8
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|-++|..+..+|.+|..+++.
T Consensus 175 G~iG~E~A~~l~~~G~~Vtli~~~ 198 (451)
T PRK07846 175 GFIAAEFAHVFSALGVRVTVVNRS 198 (451)
T ss_pred CHHHHHHHHHHHHcCCeEEEEEcC
Confidence 679999999999999999998764
No 475
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=22.80 E-value=70 Score=23.08 Aligned_cols=23 Identities=4% Similarity=-0.168 Sum_probs=19.2
Q ss_pred cchHHHHHHHHhhcCCE-EEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r 106 (109)
|.+|+..++.+++.|++ |++.++
T Consensus 184 g~vG~~~~~~a~~~G~~~v~~~~~ 207 (350)
T cd08256 184 GPLGLGMIGAARLKNPKKLIVLDL 207 (350)
T ss_pred CHHHHHHHHHHHHcCCcEEEEEcC
Confidence 78999999999999986 556554
No 476
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=22.75 E-value=94 Score=23.79 Aligned_cols=24 Identities=4% Similarity=-0.183 Sum_probs=21.8
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||-++|..+..+|.+|..+++.
T Consensus 178 G~ig~E~A~~l~~~G~~Vtli~~~ 201 (452)
T TIGR03452 178 GYIAAEFAHVFSALGTRVTIVNRS 201 (452)
T ss_pred CHHHHHHHHHHHhCCCcEEEEEcc
Confidence 679999999999999999998764
No 477
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=22.45 E-value=1e+02 Score=23.28 Aligned_cols=24 Identities=0% Similarity=-0.256 Sum_probs=21.5
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|-++|..+..+|.+|..+++.
T Consensus 166 G~~g~e~A~~l~~~g~~Vtli~~~ 189 (438)
T PRK07251 166 GNIGLEFAGLYNKLGSKVTVLDAA 189 (438)
T ss_pred CHHHHHHHHHHHHcCCeEEEEecC
Confidence 679999999999999999998764
No 478
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=22.44 E-value=1.1e+02 Score=21.91 Aligned_cols=24 Identities=8% Similarity=-0.034 Sum_probs=18.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|+-|+.+|-.++.+|++++.+=|
T Consensus 65 sGN~g~alA~~a~~~Gl~~~i~vp 88 (298)
T TIGR01139 65 SGNTGIALAMVAAARGYKLILTMP 88 (298)
T ss_pred CChhHHHHHHHHHHcCCeEEEEeC
Confidence 378888888888888888776644
No 479
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=22.34 E-value=62 Score=18.83 Aligned_cols=23 Identities=4% Similarity=-0.016 Sum_probs=20.2
Q ss_pred ccchHHHHHHHHhhcCCEEEEEc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYST 105 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~ 105 (109)
.|+||.....+|+..|++|+..+
T Consensus 67 ~~~iG~~a~~~l~~~gI~v~~~~ 89 (102)
T cd00562 67 VGGIGGPAAAKLEAAGIKPIKAA 89 (102)
T ss_pred EcccCccHHHHHHHcCCEEEEcC
Confidence 38899999999999999998654
No 480
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=22.22 E-value=92 Score=22.20 Aligned_cols=24 Identities=4% Similarity=-0.209 Sum_probs=20.6
Q ss_pred cchHHHHHHHHhh-cCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLA-SIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~-fg~~V~~~~r~ 107 (109)
|.+|..+++.++. +|.+|++.++.
T Consensus 172 g~vG~~~~~la~~~~g~~v~~~~~~ 196 (338)
T PRK09422 172 GGLGNLALQYAKNVFNAKVIAVDIN 196 (338)
T ss_pred cHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 7899999999998 59999988654
No 481
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=22.14 E-value=83 Score=22.67 Aligned_cols=23 Identities=4% Similarity=-0.270 Sum_probs=19.6
Q ss_pred cchHHHHHHHHhhcCC-EEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r 106 (109)
|.+|..+++.++++|+ +|++.++
T Consensus 185 g~vg~~~~~~a~~~G~~~v~~~~~ 208 (350)
T cd08240 185 GGLGLMALALLKALGPANIIVVDI 208 (350)
T ss_pred cHHHHHHHHHHHHcCCCeEEEEeC
Confidence 7899999999999999 6766654
No 482
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.08 E-value=1.1e+02 Score=22.16 Aligned_cols=22 Identities=5% Similarity=-0.106 Sum_probs=19.8
Q ss_pred hHHHHHHHHhhcCCEEEEEccc
Q psy15800 86 SDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 86 IG~~va~~~~~fg~~V~~~~r~ 107 (109)
.|+.++.+|...|++|..+++.
T Consensus 171 vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 171 LGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred HHHHHHHHHHhCCCEEEEEeCC
Confidence 8999999999999999988764
No 483
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=22.07 E-value=77 Score=26.11 Aligned_cols=25 Identities=0% Similarity=-0.088 Sum_probs=22.5
Q ss_pred cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
|.+|..+|..+..-|.+|..+|+..
T Consensus 322 G~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 322 GIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred chhHHHHHHHHHhCCCeEEEEeCCH
Confidence 6799999999999999999999753
No 484
>PRK06116 glutathione reductase; Validated
Probab=22.02 E-value=1.1e+02 Score=23.25 Aligned_cols=24 Identities=0% Similarity=-0.400 Sum_probs=21.6
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|-++|..+..+|.+|..+++.
T Consensus 176 G~~g~E~A~~l~~~g~~Vtlv~~~ 199 (450)
T PRK06116 176 GYIAVEFAGVLNGLGSETHLFVRG 199 (450)
T ss_pred CHHHHHHHHHHHHcCCeEEEEecC
Confidence 679999999999999999988764
No 485
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=22.02 E-value=97 Score=23.56 Aligned_cols=24 Identities=0% Similarity=-0.226 Sum_probs=21.6
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.+|-++|..+..+|.+|..+++.
T Consensus 157 G~ig~E~A~~l~~~g~~Vtli~~~ 180 (438)
T PRK13512 157 GYISLEVLENLYERGLHPTLIHRS 180 (438)
T ss_pred CHHHHHHHHHHHhCCCcEEEEecc
Confidence 679999999999999999988764
No 486
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=22.01 E-value=75 Score=22.86 Aligned_cols=23 Identities=9% Similarity=-0.169 Sum_probs=19.8
Q ss_pred cchHHHHHHHHhhcCCE-EEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r 106 (109)
|.+|..++++++.+|.+ |+..++
T Consensus 172 g~vG~~a~~lak~~G~~~v~~~~~ 195 (343)
T cd05285 172 GPIGLLTAAVAKAFGATKVVVTDI 195 (343)
T ss_pred CHHHHHHHHHHHHcCCcEEEEECC
Confidence 67999999999999998 777654
No 487
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=21.99 E-value=1.1e+02 Score=22.85 Aligned_cols=24 Identities=4% Similarity=-0.003 Sum_probs=21.3
Q ss_pred cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~ 107 (109)
|.+|..+|+.|...|. ++..+|+.
T Consensus 33 GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 33 GALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 7899999999999998 78888864
No 488
>KOG1203|consensus
Probab=21.98 E-value=93 Score=24.09 Aligned_cols=24 Identities=4% Similarity=-0.189 Sum_probs=20.9
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|++|+.+.+.|+..|..|.+.=|.
T Consensus 89 G~vG~~iv~~llkrgf~vra~VRd 112 (411)
T KOG1203|consen 89 GKVGRRIVKILLKRGFSVRALVRD 112 (411)
T ss_pred CchhHHHHHHHHHCCCeeeeeccC
Confidence 899999999999999988876554
No 489
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=21.91 E-value=82 Score=18.84 Aligned_cols=24 Identities=0% Similarity=0.030 Sum_probs=20.6
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|+||....++|+.-|++|+..+.
T Consensus 71 ~~~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 71 CAKIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred ehhhCccHHHHHHHCCCEEEEecC
Confidence 389999999999999999985543
No 490
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=21.86 E-value=1.2e+02 Score=20.50 Aligned_cols=24 Identities=4% Similarity=-0.181 Sum_probs=20.7
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|.+|...++.++..|.+|+..++
T Consensus 118 ~g~~g~~~~~~a~~~g~~v~~~~~ 141 (293)
T cd05195 118 AGGVGQAAIQLAQHLGAEVFATVG 141 (293)
T ss_pred CCHHHHHHHHHHHHcCCEEEEEeC
Confidence 378999999999999999887754
No 491
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=21.79 E-value=1e+02 Score=23.61 Aligned_cols=24 Identities=0% Similarity=-0.368 Sum_probs=21.4
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|.||-++|..+..+|.+|..+.+.
T Consensus 175 G~iG~E~A~~l~~~g~~Vtli~~~ 198 (450)
T TIGR01421 175 GYIAVELAGVLHGLGSETHLVIRH 198 (450)
T ss_pred CHHHHHHHHHHHHcCCcEEEEecC
Confidence 679999999999999999988764
No 492
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=21.78 E-value=86 Score=22.52 Aligned_cols=25 Identities=0% Similarity=-0.177 Sum_probs=21.8
Q ss_pred cchHHHHHHHHhhcCC-EEEEEcccc
Q psy15800 84 TQSDTNHTQRCLASIM-QLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~~fg~-~V~~~~r~~ 108 (109)
|..|+.++..|...|+ +|..++|..
T Consensus 134 GGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 134 GGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred cHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 6789999999999998 699999863
No 493
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=21.77 E-value=45 Score=26.33 Aligned_cols=19 Identities=5% Similarity=-0.319 Sum_probs=13.6
Q ss_pred cchHHHHHHHHhhcCCEEEEEccc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTCY 107 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r~ 107 (109)
|+||+ +++|+|++.++++.
T Consensus 45 GSqG~-----AqAlNLrdSGvnVv 63 (487)
T PRK05225 45 GAQGL-----NQGLNMRDSGLDIS 63 (487)
T ss_pred CHHHH-----HHhCCCccccceeE
Confidence 78888 67777777766654
No 494
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=21.63 E-value=1e+02 Score=21.94 Aligned_cols=23 Identities=4% Similarity=-0.145 Sum_probs=20.2
Q ss_pred cchHHHHHHHHhhcCCEEEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~V~~~~r 106 (109)
|.+|+.+++.+++.|.+|+....
T Consensus 157 g~vg~~~~~~a~~~g~~v~~~~~ 179 (341)
T cd08290 157 SAVGQAVIQLAKLLGIKTINVVR 179 (341)
T ss_pred hHHHHHHHHHHHHcCCeEEEEEc
Confidence 78999999999999999887654
No 495
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=21.52 E-value=1.1e+02 Score=21.51 Aligned_cols=24 Identities=4% Similarity=-0.122 Sum_probs=20.5
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|.+|+..++.+++.|.+|+..++
T Consensus 149 ~g~ig~~~~~~a~~~g~~v~~~~~ 172 (331)
T cd08273 149 SGGVGQALLELALLAGAEVYGTAS 172 (331)
T ss_pred CcHHHHHHHHHHHHcCCEEEEEeC
Confidence 378999999999999999887653
No 496
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=21.39 E-value=1.1e+02 Score=23.33 Aligned_cols=24 Identities=8% Similarity=-0.125 Sum_probs=18.1
Q ss_pred hccchHHHHHHHHhhc-----CCEEEEEc
Q psy15800 82 LITQSDTNHTQRCLAS-----IMQLVYST 105 (109)
Q Consensus 82 l~G~IG~~va~~~~~f-----g~~V~~~~ 105 (109)
-+|+|||.+.|.+..- +++|.+.+
T Consensus 10 GFGRIGR~v~R~~~~~~~~~~~ievVAIN 38 (361)
T PTZ00434 10 GFGRIGRMVFQAICDQGLIGTEIDVVAVV 38 (361)
T ss_pred CcChHHHHHHHHHHHcccCCCCeEEEEEe
Confidence 3699999999986542 57887764
No 497
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=21.39 E-value=79 Score=23.05 Aligned_cols=23 Identities=9% Similarity=-0.081 Sum_probs=19.8
Q ss_pred cchHHHHHHHHhhcCCE-EEEEcc
Q psy15800 84 TQSDTNHTQRCLASIMQ-LVYSTC 106 (109)
Q Consensus 84 G~IG~~va~~~~~fg~~-V~~~~r 106 (109)
|.+|+.++++++.+|++ |++.++
T Consensus 197 g~vG~~~~~lak~~G~~~vi~~~~ 220 (367)
T cd08263 197 GGVGSSAIQLAKAFGASPIIAVDV 220 (367)
T ss_pred cHHHHHHHHHHHHcCCCeEEEEeC
Confidence 67999999999999998 776654
No 498
>COG1992 Uncharacterized conserved protein [Function unknown]
Probab=21.33 E-value=1.2e+02 Score=20.79 Aligned_cols=51 Identities=4% Similarity=-0.106 Sum_probs=35.4
Q ss_pred cchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800 43 DAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQSDTNHTQRCLASIMQLVYSTCYN 108 (109)
Q Consensus 43 ~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~G~IG~~va~~~~~fg~~V~~~~r~~ 108 (109)
--.+.|+.-++|++.|.-+.....+ .=+-..++.+.|+..|..|..|||..
T Consensus 69 fGaS~H~Ar~lL~~~~~~p~iraa~---------------NIrY~~~~v~~~~~~G~~v~~~dR~~ 119 (181)
T COG1992 69 FGASSHTARVLLTVMKHDPDIRAAI---------------NIRYSEEVVEALKDLGLAVSSFDRSK 119 (181)
T ss_pred CCchHHHHHHHHHHHhhCCCceEEe---------------eecccHHHHHHHHhcCceEEEeCccc
Confidence 3467888888888777544332211 01236678999999999999999954
No 499
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=21.32 E-value=1.2e+02 Score=21.87 Aligned_cols=24 Identities=0% Similarity=-0.218 Sum_probs=19.1
Q ss_pred ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800 83 ITQSDTNHTQRCLASIMQLVYSTC 106 (109)
Q Consensus 83 ~G~IG~~va~~~~~fg~~V~~~~r 106 (109)
.|+-|+.+|-.++.+|++++.+=|
T Consensus 67 sGN~g~alA~~a~~~G~~~~i~~p 90 (290)
T TIGR01138 67 SGNTGIALAMIAALKGYRMKLLMP 90 (290)
T ss_pred CChHHHHHHHHHHHcCCeEEEEEC
Confidence 388899999888888888776644
No 500
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=21.28 E-value=83 Score=25.86 Aligned_cols=25 Identities=0% Similarity=-0.203 Sum_probs=21.6
Q ss_pred cchHHHHHHHHh-hcCCEEEEEcccc
Q psy15800 84 TQSDTNHTQRCL-ASIMQLVYSTCYN 108 (109)
Q Consensus 84 G~IG~~va~~~~-~fg~~V~~~~r~~ 108 (109)
|.+|..+|..+. .-|++|..+|+..
T Consensus 313 G~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 313 GLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 679999999987 4799999999764
Done!