RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15800
(109 letters)
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 76.4 bits (189), Expect = 3e-18
Identities = 34/69 (49%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 3 SRAGENLKVISTFSVGHDHLHLDQIKSRGIRVG-TVGPVSSDAVAEFNIGLAIAVSRRFQ 61
AG NLKVIST SVG DHL LD+IK RGIRVG T V +D AE + L + RR
Sbjct: 71 DAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPD-VLTDTTAELAVSLLLTTCRRLP 129
Query: 62 QGHNCIASG 70
+ + +G
Sbjct: 130 EAIEEVKNG 138
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 74.5 bits (184), Expect = 2e-17
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 3 SRAGENLKVISTFSVGHDHLHLDQIKSRGIRVG-TVGPVSSDAVAEFNIGLAIAVSRRFQ 61
R EN+K IST+S+G DH+ LD K+RGI+VG + A AE + L + +RR
Sbjct: 62 DRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPH-GVTVATAEIAMLLLLGSARRAG 120
Query: 62 QGHNCIASG 70
+G I +
Sbjct: 121 EGEKMIRTR 129
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 72.6 bits (179), Expect = 7e-17
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
+ LKVI+ +SVG DH+ L+ + RGIRV V ++A A+ + L +AV+RR +G
Sbjct: 62 RAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121
Query: 65 NCIASG 70
G
Sbjct: 122 AYARDG 127
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 71.5 bits (176), Expect = 2e-16
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 3 SRAGENLKVISTFSVGHDHLHLDQIKSRGIRVG-TVGPVSSDAVAEFNIGLAIAVSRRFQ 61
+ LK I+T SVG+DH+ + +S GI+V T V SDA AE + L + RR
Sbjct: 89 RKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPD-VLSDACAEIAMLLVLNACRRGY 147
Query: 62 QGHNCIASG 70
+ + SG
Sbjct: 148 EADRMVRSG 156
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 71.1 bits (175), Expect = 3e-16
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
L++++ ++VG+D++ +++ RGI V V +DA A+ L +A +R +G
Sbjct: 64 NAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGD 123
Query: 65 NCIASG 70
+ SG
Sbjct: 124 RFVRSG 129
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 70.0 bits (172), Expect = 1e-15
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 3 SRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 62
S +LKV + G D L LD + RG+ A ++ + L ++V R
Sbjct: 75 SHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASY 134
Query: 63 GHNCIASGTEKS 74
+G ++
Sbjct: 135 SERAARTGDPET 146
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 68.8 bits (169), Expect = 2e-15
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
A L+VI G D+ +D +RG+ + V + + AE IGLA+ + R +
Sbjct: 64 ACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAAD 123
Query: 65 NCIASG 70
+ SG
Sbjct: 124 AFVRSG 129
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 67.3 bits (165), Expect = 9e-15
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
A L+++S+FSVG D + L + + +G+RV V +D VA+ IGL +AV RR +
Sbjct: 84 ALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECD 143
Query: 65 NCIASG 70
+ G
Sbjct: 144 KYVRRG 149
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 66.1 bits (162), Expect = 2e-14
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
+L +I+ VG D + L + + R I V T V +D VA+ I L +AV RR G
Sbjct: 90 KLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGD 149
Query: 65 NCIASG 70
+ G
Sbjct: 150 RLVREG 155
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 63.0 bits (154), Expect = 2e-13
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 4 RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
LK I + G DHL + I + V ++DAVAEF + L +A +R Q
Sbjct: 46 AKMPRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNADAVAEFALALLLAPYKRIIQY 104
Query: 64 HNCIASG 70
+ G
Sbjct: 105 GEKMKRG 111
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 63.5 bits (155), Expect = 2e-13
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
+NLK+ T +G DH+ L R + V V +S +VAE + + +++ R + H
Sbjct: 110 KAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSH 169
Query: 65 NCIASG 70
G
Sbjct: 170 EWARKG 175
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 61.5 bits (150), Expect = 8e-13
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 4 RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
LK+I T SVG DH+ LD K +GI V + S ++VAE + + + +R ++
Sbjct: 60 SKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRI 119
Query: 64 HNCIASG 70
+ +
Sbjct: 120 EDRVKKL 126
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 59.9 bits (146), Expect = 3e-12
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
G+ K+I S G DH+ ++ I + S +VAE L +A ++ + +
Sbjct: 46 LGKRTKMIQAISAGVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLAHAKNILENN 104
Query: 65 NCIASG 70
+ +G
Sbjct: 105 ELMKAG 110
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 59.1 bits (144), Expect = 6e-12
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
E LKVIS S G+D++ L++ RGI V V + S+AVAEF +GL I + R+
Sbjct: 61 NAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYAD 120
Query: 65 NCIASG 70
I G
Sbjct: 121 KFIRRG 126
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 58.1 bits (141), Expect = 2e-11
Identities = 16/79 (20%), Positives = 33/79 (41%)
Query: 4 RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
R LK + S G D+L L +++ G+ V + +DA++E + ++V R +
Sbjct: 57 RPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAA 116
Query: 64 HNCIASGTEKSQQHAITEL 82
+ + + L
Sbjct: 117 WLNQRGARQWALPMTTSTL 135
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 57.2 bits (139), Expect = 3e-11
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
A + +S +VG D++ + + K G ++ V S +A+AE A + R+ +
Sbjct: 67 ADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMD 126
Query: 65 NCIASG 70
+A
Sbjct: 127 EKVARH 132
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 56.5 bits (137), Expect = 6e-11
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
+K ++ +VG D++ + +K GIR+ V S A+AEF + + + R +
Sbjct: 65 HAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQ 124
Query: 65 NCIASG 70
+ +G
Sbjct: 125 AQLQAG 130
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 55.0 bits (133), Expect = 2e-10
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
+NLK++ T +G DH+ L + G+ V V + +VAE + + + R F G+
Sbjct: 83 KAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGY 142
Query: 65 NCIASG 70
N + G
Sbjct: 143 NQVVKG 148
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 53.0 bits (128), Expect = 9e-10
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 8 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 67
+K I T + G DH+ + K G + V S +A+AE + A+ + R +
Sbjct: 69 GVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRT 128
Query: 68 ASG 70
A
Sbjct: 129 AKK 131
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 50.0 bits (120), Expect = 1e-08
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRG--IRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 62
+ LK++ VG DH+ LD I G I V V + +VAE + + + R F
Sbjct: 81 KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVP 140
Query: 63 GHNCIASG 70
H I +
Sbjct: 141 AHEQIINH 148
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 48.0 bits (115), Expect = 7e-08
Identities = 14/66 (21%), Positives = 26/66 (39%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
+ L++I G D++ + GI V V S + A+ + + + RR H
Sbjct: 82 KFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLH 141
Query: 65 NCIASG 70
+ G
Sbjct: 142 QALREG 147
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 47.5 bits (114), Expect = 8e-08
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
+ LKVI+ VG D++ ++ K +GI V SS +VAE +GL +V+R+
Sbjct: 63 SAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFAD 122
Query: 65 NCIASG 70
+ G
Sbjct: 123 RKMREG 128
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 45.3 bits (108), Expect = 5e-07
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 5 AGENLKVISTFSV----GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRF 60
LK+IS H+ L+ +G+ V G S A AE L +A RR
Sbjct: 68 RLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVV-LEGKGSPVAPAELTWALVMAAQRRI 126
Query: 61 QQGHNCIASG 70
Q + G
Sbjct: 127 PQYVASLKHG 136
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 44.9 bits (107), Expect = 7e-07
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
G+ LK+I+ +G D++ ++ + R I+V S+D+ E IGL IA +R+
Sbjct: 65 KGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSM 124
Query: 65 NCIASG 70
SG
Sbjct: 125 ALAKSG 130
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 44.6 bits (106), Expect = 9e-07
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
+G + + T + G DH+ +K GI ++ AV E+ + ++ R
Sbjct: 58 SGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER 112
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 43.1 bits (102), Expect = 3e-06
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
AG ++ + T ++G DHL LD GI + ++ V ++ +G +A++
Sbjct: 55 AGSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV 109
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 41.4 bits (98), Expect = 1e-05
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
A E L+V+ G D++ L+ +GI V +S + AE G+ + ++R+ Q
Sbjct: 86 AAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAT 145
Query: 65 NCIASGT-EKSQ 75
+ G E+ +
Sbjct: 146 ASMKDGKWERKK 157
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 41.5 bits (98), Expect = 1e-05
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
A LK+++ VG D++ +D +RG+ V + + AE + L +A SR+
Sbjct: 63 AAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAAD 122
Query: 65 NCIASGT-EKSQ 75
+ T ++S
Sbjct: 123 ASLREHTWKRSS 134
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 37.7 bits (88), Expect = 2e-04
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 4 RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 62
L + G D L LD R ++ V + ++E+ G +++ R+
Sbjct: 63 AKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPL 120
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 37.6 bits (88), Expect = 2e-04
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTV-GPVS-SDAVAEFNIGLAIAVSRRFQQ 62
A L + FSVG + + L + RGI V P S + +VAE IG I + RR
Sbjct: 77 AANRLIAVGCFSVGTNQVELKAARKRGIPV--FNAPFSNTRSVAELVIGEIIMLMRRIFP 134
Query: 63 GHNCIASGT-EKS 74
+G EK+
Sbjct: 135 RSVSAHAGGWEKT 147
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 37.6 bits (88), Expect = 3e-04
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTV-GPVS-SDAVAEFNIGLAIAVSRRFQQ 62
A E L I F++G + + LD RGI V P S + +VAE IG + + R +
Sbjct: 66 AAEKLVAIGAFAIGTNQVDLDAAAKRGIPV--FNAPFSNTRSVAELVIGELLLLLRGVPE 123
Query: 63 GHNCIASGT-EKSQ 75
+ G K
Sbjct: 124 ANAKAHRGVGNKLA 137
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 32.7 bits (75), Expect = 0.011
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 6/62 (9%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIR------VGTVGPVSSDAVAEFNIGLAIAVSR 58
AG LK + G D + + + E+ + + R
Sbjct: 56 AGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFR 115
Query: 59 RF 60
RF
Sbjct: 116 RF 117
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine;
2.2A {Bacillus anthracis}
Length = 312
Score = 26.8 bits (60), Expect = 1.3
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 35 GTVGPVSSDAVAEFNI 50
G V D AE+N
Sbjct: 159 GNVHEPEHDGTAEWNS 174
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 24.9 bits (55), Expect = 6.6
Identities = 5/21 (23%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 50 IGLAIAVSRRFQQGHNCIASG 70
+G A+ R ++ I +G
Sbjct: 15 LGSAVK--ERLEKKAEVITAG 33
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase,
isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Length = 230
Score = 24.4 bits (54), Expect = 7.7
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 20 DHLH--LDQIKSRGIRVGTV 37
HLH L QI+ G + G V
Sbjct: 99 PHLHRTLCQIRELGKKAGAV 118
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin
cycle, oxidative pentose PH pathway; 2.30A {Solanum
tuberosum} SCOP: c.1.2.2
Length = 230
Score = 24.4 bits (54), Expect = 7.8
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 20 DHLH--LDQIKSRGIRVGTV 37
HLH ++QIKS G + G V
Sbjct: 105 IHLHRTINQIKSLGAKAGVV 124
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
PDB: 1h1z_A
Length = 228
Score = 24.4 bits (54), Expect = 8.1
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 18 GHDHLH--LDQIKSRGIRVGTV 37
D+ + IK++G+R G
Sbjct: 98 SRDNWQELIQSIKAKGMRPGVS 119
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol
5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus
pyogenes} SCOP: c.1.2.2
Length = 220
Score = 24.4 bits (54), Expect = 8.7
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 20 DHLH--LDQIKSRGIRVGTV 37
H+H L +IK+ G++ G V
Sbjct: 96 RHIHGALQKIKAAGMKAGVV 115
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc
genomics, center for structural genomics of infectious
DISE csgid; 2.05A {Francisella tularensis subsp}
Length = 246
Score = 24.4 bits (54), Expect = 9.6
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 20 DHLH--LDQIKSRGIRVGTV 37
+H+ L IKS GI+ G
Sbjct: 121 EHIDRSLQLIKSFGIQAGLA 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.129 0.365
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,488,914
Number of extensions: 74794
Number of successful extensions: 304
Number of sequences better than 10.0: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 49
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)