RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15800
(109 letters)
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate
dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Length = 131
Score = 51.6 bits (123), Expect = 2e-10
Identities = 12/57 (21%), Positives = 24/57 (42%)
Query: 8 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
+K ++ +VG D++ + +K GIR+ V + AV + +G
Sbjct: 68 GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE 124
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 133
Score = 49.2 bits (117), Expect = 2e-09
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 4 RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
+ L++I G D++ + GI P +S + +I + +R ++
Sbjct: 61 EKFKALRIIVRIGSGFDNIDIKSAGDLGI-AVCNVPAASVYSEQASIEMREEAAREIRRA 119
Query: 64 HNCIASGTEK 73
+ K
Sbjct: 120 ITGRIPDSLK 129
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 129
Score = 45.4 bits (107), Expect = 5e-08
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 1 MSSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRF 60
+ R EN+K IST+S+G DH+ LD K+RGI+VG ++ A + + F
Sbjct: 60 VIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALF 119
Query: 61 QQGH 64
Sbjct: 120 GGAD 123
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase
{Lactobacillus helveticus [TaxId: 1587]}
Length = 134
Score = 43.8 bits (103), Expect = 2e-07
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRF 60
A + +S +VG D++ + + K G ++ V S + + +
Sbjct: 66 ADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYS---YTTHAVRNMVVKAFDN 118
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 41.9 bits (98), Expect = 2e-06
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 8 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE--------FNIGLAIAVSRR 59
NLK+ T +G DH+ L R + V V +S + I R
Sbjct: 113 NLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRP 172
Query: 60 FQQGHNCIASG 70
+ + + G
Sbjct: 173 IRDEYLIVQGG 183
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 130
Score = 39.7 bits (92), Expect = 8e-06
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 4 RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
A LK+++ VG D++ +D +RG+ V +S A A+ G +A S R
Sbjct: 60 AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALA 119
Query: 64 HNCIASG 70
+
Sbjct: 120 GEFVPDA 126
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 34.6 bits (79), Expect = 6e-04
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
LK I + G DHL + I G G + + + R
Sbjct: 47 KMPRLKFIQVVTAGLDHLPWESIPPHVTVAGNAGS-NGYGNERVWRQMVMEAVRN 100
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 34.1 bits (77), Expect = 0.001
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 42 SDAVAEFNIGLAIAVSRRFQQGHNCIASG 70
+ A AE + L + +RR +G I +
Sbjct: 2 TVATAEIAMLLLLGSARRAGEGEKMIRTR 30
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 34.3 bits (77), Expect = 0.001
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 43 DAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITEL 82
+ A+ + + + RR H + GT I E+
Sbjct: 1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREV 40
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 34.0 bits (76), Expect = 0.002
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 41 SSDAVAEFNIGLAIAVSRRFQQGHNCIASG 70
S A+AEF + + + R + + +G
Sbjct: 1 SPAAIAEFALTDTLYLLRNMGKVQAQLQAG 30
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 197
Score = 34.0 bits (76), Expect = 0.002
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 43 DAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITEL----ITQSDTNHTQRCLASI 98
+A+AE A + R+ + +A + E+ + T H + I
Sbjct: 2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQI 61
Query: 99 MQLVYSTCYNQ 109
M+ +
Sbjct: 62 MEGFGAKVITY 72
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 32.8 bits (73), Expect = 0.004
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 43 DAVAEFNIGLAIAVSRRFQQGHNCIASG 70
DAVAEF + L +A +R Q + G
Sbjct: 2 DAVAEFALALLLAPYKRIIQYGEKMKRG 29
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 31.9 bits (71), Expect = 0.009
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 42 SDAVAEFNIGLAIAVSRRFQQGHNCIASG 70
+ +VAE IG + + R + + G
Sbjct: 2 TRSVAELVIGELLLLLRGVPEANAKAHRG 30
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 31.1 bits (69), Expect = 0.016
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 42 SDAVAEFNIGLAIAVSRRFQQGHNCIASG 70
+ AE + L +A SR+ +
Sbjct: 2 IHSAAEHALALLLAASRQIPAADASLREH 30
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas
sp., strain 101 [TaxId: 306]}
Length = 188
Score = 31.1 bits (69), Expect = 0.017
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 44 AVAEFNIGLAIAVSRRFQQGHNCIASG 70
+VAE + + +++ R + H G
Sbjct: 2 SVAEHVVMMILSLVRNYLPSHEWARKG 28
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 132
Score = 28.9 bits (64), Expect = 0.063
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 8 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 65
L I F++G + + LD RGI V S+ E NIGL +A + + N
Sbjct: 69 KLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQE-NIGLEVA-GKLIKYSDN 124
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
H2A.Z [TaxId: 9606]}
Length = 103
Score = 26.0 bits (57), Expect = 0.63
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQ 61
S RAG F VG H HL + RVG V S A+ E+ + ++
Sbjct: 5 SQRAG------LQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNAS 58
Query: 62 QGHN 65
+
Sbjct: 59 KDLK 62
>d1y6ia1 a.118.1.22 (A:1-82) Mg-chelatase cofactor Gun4
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 82
Score = 25.5 bits (56), Expect = 0.64
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 69 SGTEKSQQHAITELITQSDT 88
+EK Q AI L +
Sbjct: 14 DASEKKQLTAIAALAEMGEG 33
>d1z3xa1 a.118.1.22 (A:1-87) GUN4-like protein Ycf53, N-terminal
domain {Thermosynechococcus elongatus [TaxId: 146786]}
Length = 87
Score = 25.6 bits (56), Expect = 0.70
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 69 SGTEKSQQHAITELITQSDT 88
+G EKSQ A++ L T
Sbjct: 17 NGNEKSQLAAMSTLSTAGTE 36
>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces
lividans [TaxId: 1916]}
Length = 192
Score = 26.4 bits (57), Expect = 0.71
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 24 LDQIKSRGIRVGTVGPVSSDAVA 46
+ +G+ G + P + AVA
Sbjct: 169 AQTLAGKGLCSGMISPQTGRAVA 191
>d1qdla_ d.161.1.1 (A:) Anthranilate synthase
aminodeoxyisochorismate synthase/lyase subunit, TrpE
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 422
Score = 24.5 bits (52), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 30 RGIRVGTVGPVSSDAVAEFNIGL 52
RG G VG +S+D AEF I +
Sbjct: 355 RGPYAGAVGFISADGNAEFAIAI 377
>d2g5fa1 d.161.1.1 (A:15-449) Salicylate synthase MbtI
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 435
Score = 24.1 bits (51), Expect = 5.7
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 30 RGIRVGTVGPVSSDAVAEFNIGL 52
RG+ G V +S+D + + L
Sbjct: 368 RGLYSGAVVMLSADGGLDAALTL 390
>d1k0ga_ d.161.1.1 (A:) P-aminobenzoate synthase component I
{Escherichia coli [TaxId: 562]}
Length = 453
Score = 23.8 bits (50), Expect = 5.8
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 29 SRGIRVGTVGPVSSDAVAEFNIGLAIAVSR 58
R G++G +S + +I + +
Sbjct: 386 RRNAWCGSIGYLSFCGNMDTSITIRTLTAI 415
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.129 0.365
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 340,367
Number of extensions: 12163
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 24
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)