BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15801
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|O Chain O, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|B Chain B, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|O Chain O, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|O Chain O, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|O Chain O, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|B Chain B, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|O Chain O, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|B Chain B, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|O Chain O, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|B Chain B, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|O Chain O, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|B Chain B, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|O Chain O, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|B Chain B, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|O Chain O, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|B Chain B, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|O Chain O, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|B Chain B, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|O Chain O, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|B Chain B, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|O Chain O, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|B Chain B, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|O Chain O, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 441
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%)
Query: 153 NKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQ 212
N + + S+ SP +RI V KAG+RYET NLG H+LR A+ L+T+ + F I R ++
Sbjct: 33 NGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLLRLASPLTTKGASSFRITRGIE 92
Query: 213 QAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDR 270
GGSL RE + Y +E +R + V ++L +V EFRPWEV+DL P+LK D+
Sbjct: 93 AVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVTDLQPQLKVDK 150
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 25/125 (20%)
Query: 5 EALAFAVLKYALGAGP-AKTGKNQRSTNSKGLSRTP-------------------GRESL 44
EA AF+VL++ LGAGP K G + S +G+++ G ++
Sbjct: 270 EANAFSVLQHVLGAGPLIKRGSSVTSKLYQGVAKATTQPFDASAFNVNYSDSGLFGFYTI 329
Query: 45 DESHHFSPPQALQASIDVVRGA---GIKDADIARGKALLKRHLADSFETLDSTVDSVVRQ 101
++ H + ++A+++ ++ A G+ + D+ + K LK S ET ++ + +
Sbjct: 330 SQAAH--AGEVIRAAMNQLKAAAQGGVTEEDVTKAKNQLKATYLMSVETAQGLLNEIGSE 387
Query: 102 AVTTG 106
A+ +G
Sbjct: 388 ALLSG 392
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%)
Query: 153 NKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQ 212
N + + S+ SP + I V KAG+RYE NLG +H+LR A+ L+T+ + F I R ++
Sbjct: 14 NGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKGASSFKITRGIE 73
Query: 213 QAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDR 270
GG L RE + YT+E +R ++ + +FL +V EFRPWEV+DL P+LK D+
Sbjct: 74 AVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADLQPQLKIDK 131
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%)
Query: 153 NKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQ 212
N + + S+ SP + I V KAG+RYE NLG +H+LR A+ L+T+ + F I R ++
Sbjct: 14 NGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKGASSFKITRGIE 73
Query: 213 QAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDR 270
GG L RE + YT+E +R ++ + +FL +V EFRPWEV+DL P+LK D+
Sbjct: 74 AVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADLQPQLKIDK 131
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 74/118 (62%)
Query: 153 NKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQ 212
N + + S+ +P +RI + KAG+RYE +NLG +H+LR A+ L+T+ + F I R ++
Sbjct: 45 NGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIE 104
Query: 213 QAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDR 270
GG L T RE + YT+E +R ++ + +FL +V EFR WEV+ L P+L+ D+
Sbjct: 105 AVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDK 162
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 23/124 (18%)
Query: 5 EALAFAVLKYALGAGP-AKTGKNQRST----NSKGLSRTPGRESLDESH-------HFSP 52
EA AF+VL++ LGAGP K G N S+ +KG+ + + + S+ ++
Sbjct: 282 EANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTI 341
Query: 53 PQALQASIDVVRGA----------GIKDADIARGKALLKRHLADSFETLDSTVDSVVRQA 102
QA A DV++ A + + D+ K LK S E+ + +D V QA
Sbjct: 342 SQAASAG-DVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQA 400
Query: 103 VTTG 106
+ G
Sbjct: 401 LAAG 404
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 74/118 (62%)
Query: 153 NKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQ 212
N + + S+ +P +RI + KAG+RYE +NLG +H+LR A+ L+T+ + F I R ++
Sbjct: 31 NGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIE 90
Query: 213 QAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDR 270
GG L T RE + YT+E +R ++ + +FL +V EFR WEV+ L P+L+ D+
Sbjct: 91 AVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDK 148
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 23/124 (18%)
Query: 5 EALAFAVLKYALGAGP-AKTGKNQRST----NSKGLSRTPGRESLDESH-------HFSP 52
EA AF+VL++ LGAGP K G N S+ +KG+ + + + S+ ++
Sbjct: 268 EANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTI 327
Query: 53 PQALQASIDVVRGA----------GIKDADIARGKALLKRHLADSFETLDSTVDSVVRQA 102
QA A DV++ A + + D+ K LK S E+ + +D V QA
Sbjct: 328 SQAASAG-DVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQA 386
Query: 103 VTTG 106
+ G
Sbjct: 387 LAAG 390
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 74/118 (62%)
Query: 153 NKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQ 212
N + + S+ +P +RI + KAG+RYE +NLG +H+LR A+ L+T+ + F I R ++
Sbjct: 15 NGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIE 74
Query: 213 QAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDR 270
GG L T RE + YT+E +R ++ + +FL +V EFR WEV+ L P+L+ D+
Sbjct: 75 AVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDK 132
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 23/124 (18%)
Query: 5 EALAFAVLKYALGAGP-AKTGKNQRST----NSKGLSRTPGRESLDESH-------HFSP 52
EA AF+VL++ LGAGP K G N S+ +KG+ + + + S+ ++
Sbjct: 252 EANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTI 311
Query: 53 PQALQASIDVVRGA----------GIKDADIARGKALLKRHLADSFETLDSTVDSVVRQA 102
QA A DV++ A + + D+ K LK S E+ + +D V QA
Sbjct: 312 SQAASAG-DVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQA 370
Query: 103 VTTG 106
+ G
Sbjct: 371 LAAG 374
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|B Chain B, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|M Chain M, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|B Chain B, Yeast Cytochrome Bc1 Complex
pdb|1P84|B Chain B, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|B Chain B, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|B Chain B, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|M Chain M, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|B Chain B, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|M Chain M, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 352
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 166 IARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDRE 225
I+ ++V G+RY T D G+ H+L +T + ++R + GG+ +T+DRE
Sbjct: 12 ISTLAVKVHGGSRYATKD--GVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDRE 69
Query: 226 GIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSD-LTPRLKYD 269
I ++ ++ + LA V+ KT F+P E+++ + P +YD
Sbjct: 70 YITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYD 114
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%)
Query: 144 PDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFT 203
P+ Q N V+V S + P + V AG+RYE+ N G + L A T+
Sbjct: 12 PETQVSQLDNGVRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFLEHLAFKGTKNRP 71
Query: 204 HFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVV 249
+ + V+ G L A RE Y I+A+ K++ + LA +V
Sbjct: 72 QNALEKEVESMGAHLNAYSSREHTAYYIKALSKDVPKAVELLADIV 117
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%)
Query: 144 PDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFT 203
P+ Q N ++V S + P + V AG+RYE+ N G + + A T+
Sbjct: 46 PETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRP 105
Query: 204 HFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVV 249
+ + V+ G L A RE Y I+A+ K++ + LA +V
Sbjct: 106 GNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIV 151
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%)
Query: 144 PDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFT 203
P+ Q N ++V S + P + V AG+RYE+ N G + + A T+
Sbjct: 12 PETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRP 71
Query: 204 HFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVV 249
+ + V+ G L A RE Y I+A+ K++ + LA +V
Sbjct: 72 GNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIV 117
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%)
Query: 144 PDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFT 203
P+ Q N ++V S + P + V AG+RYE+ N G + + A T+
Sbjct: 12 PETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRP 71
Query: 204 HFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVV 249
+ + V+ G L A RE Y I+A+ K++ + LA +V
Sbjct: 72 GNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIV 117
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%)
Query: 153 NKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQ 212
N +KV + N + + + AG+R+E + G TH+L A STE + ++
Sbjct: 13 NGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLE 72
Query: 213 QAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVV 249
GG+ T RE ++Y +++G + + ++ V
Sbjct: 73 LLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETV 109
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%)
Query: 144 PDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFT 203
P+ T N ++V S + P + V AG+RYE N G + + A T++
Sbjct: 12 PETNVTTLDNGLRVASEESSQPTCTVGVWIGAGSRYENEKNNGAGYFVEHLAFKGTKKRP 71
Query: 204 HFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVV 249
+ V+ G RE + I+A+ K++ V + LA VV
Sbjct: 72 CAAFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVELLADVV 117
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%)
Query: 167 ARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDREG 226
A + + AG+R E N G H L+ A T+ GI ++ G L A RE
Sbjct: 29 ATVGIFVDAGSRAENVKNNGTAHFLQHLAFKGTQNRPQQGIELEIENIGSHLNAYTSREN 88
Query: 227 IVYTIEAVRKEIGHVHKFLASVVGKT 252
VY ++++++I L+ ++ K+
Sbjct: 89 TVYYAKSLQEDIPKAVDILSDILTKS 114
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 63 VRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTG 106
++ I DA++ R KA LK L S + + V+ + RQ VTTG
Sbjct: 344 IKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTG 387
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 167 ARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDREG 226
A + + AG+R E N G H L A T+ GI ++ G L A RE
Sbjct: 29 ATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYTSREN 88
Query: 227 IVYTIEAVRKEIGHVHKFLASVVGKT 252
VY ++++++I L+ ++ K+
Sbjct: 89 TVYYAKSLQEDIPKAVDILSDILTKS 114
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 63 VRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAVTTG 106
++ I DA++ R KA LK L S + + V+ + RQ VTTG
Sbjct: 344 IKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTG 387
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 153 NKVKVVSVNETSPIARISVAF----KAGARYETPDNLGITHVLRSAAGLSTEEFTHFGII 208
N ++V++ E P AR SVA K GAR ET + G++H L E+ +
Sbjct: 9 NGLRVIA--EVVPGAR-SVALGYFVKTGARDETKEESGVSHFLEHXVFKGPEDXDALAVN 65
Query: 209 RHVQQAGGSLYATVDREGIVY 229
R + G A E VY
Sbjct: 66 RAFDRXGAQYNAFTSEEATVY 86
>pdb|2L48|A Chain A, Solution Structure Of The Plyg Cell Wall Binding Domain
pdb|2L48|B Chain B, Solution Structure Of The Plyg Cell Wall Binding Domain
Length = 85
Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 151 SYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAG--LSTEEFTHF 205
S KVK +V TSP + + A + YETPD +G L+ A L ++ T+F
Sbjct: 2 SIQKVKNGNVATTSPTKQNIIQSGAFSPYETPDVMGALTSLKMTADFILQSDGLTYF 58
>pdb|3BEG|B Chain B, Crystal Structure Of Sr Protein Kinase 1 Complexed To Its
Substrate AsfSF2
Length = 115
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 210 HVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYD 269
H+++AG YA V R+G +E VRKE + + T+FR E R+K D
Sbjct: 36 HMREAGDVCYADVYRDGTG-VVEFVRKED---MTYAVRKLDNTKFRSHEGETAYIRVKVD 91
Query: 270 RLTRPSQG 277
PS G
Sbjct: 92 GPRSPSYG 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,466,299
Number of Sequences: 62578
Number of extensions: 272071
Number of successful extensions: 647
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 38
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)