BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15801
(318 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P22695|QCR2_HUMAN Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens
GN=UQCRC2 PE=1 SV=3
Length = 453
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 74/118 (62%)
Query: 153 NKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQ 212
N + + S+ SP++RI + KAG+RYE NLG TH+LR + L+T+ + F I R ++
Sbjct: 45 NGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIE 104
Query: 213 QAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDR 270
GG L T RE + YT+E +R ++ + +FL +V EFR WEV+DL P+LK D+
Sbjct: 105 AVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVTTAPEFRRWEVADLQPQLKIDK 162
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 1 ASAKEALAFAVLKYALGAGP-AKTGKNQRSTNSKGLSR--------TPGRESLDESHHFS 51
A + EA AF+VL++ LGAGP K G N S + +++ + S +S F
Sbjct: 278 AGSAEANAFSVLQHVLGAGPHVKRGSNTTSHLHQAVAKATQQPFDVSAFNASYSDSGLFG 337
Query: 52 PPQALQASI--DVVRGA----------GIKDADIARGKALLKRHLADSFETLDSTVDSVV 99
QA+ DV++ A + + D+ K LK S E+ + ++ V
Sbjct: 338 IYTISQATAAGDVIKAAYNQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSECFLEEVG 397
Query: 100 RQAVTTGVVKSLPDLLAEVEAVSSSDV--SAKRSFAAQPATKA 140
QA+ G +L ++++V+++D+ +AK+ + Q + A
Sbjct: 398 SQALVAGSYMPPSTVLQQIDSVANADIINAAKKFVSGQKSMAA 440
>sp|P23004|QCR2_BOVIN Cytochrome b-c1 complex subunit 2, mitochondrial OS=Bos taurus
GN=UQCRC2 PE=1 SV=2
Length = 453
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 74/118 (62%)
Query: 153 NKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQ 212
N + + S+ +P +RI + KAG+RYE +NLG +H+LR A+ L+T+ + F I R ++
Sbjct: 45 NGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIE 104
Query: 213 QAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDR 270
GG L T RE + YT+E +R ++ + +FL +V EFR WEV+ L P+L+ D+
Sbjct: 105 AVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDK 162
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 23/144 (15%)
Query: 5 EALAFAVLKYALGAGP-AKTGKNQRST----NSKGLSRTPGRESLDESH-------HFSP 52
EA AF+VL++ LGAGP K G N S+ +KG+ + + + S+ ++
Sbjct: 282 EANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTI 341
Query: 53 PQALQASIDVVRGA----------GIKDADIARGKALLKRHLADSFETLDSTVDSVVRQA 102
QA A DV++ A + + D+ K LK S E+ + +D V QA
Sbjct: 342 SQAASAG-DVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQA 400
Query: 103 VTTGVVKSLPDLLAEVEAVSSSDV 126
+ G +L +++AV+ +DV
Sbjct: 401 LAAGSYTPPSTVLQQIDAVADADV 424
>sp|Q9DB77|QCR2_MOUSE Cytochrome b-c1 complex subunit 2, mitochondrial OS=Mus musculus
GN=Uqcrc2 PE=1 SV=1
Length = 453
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 74/118 (62%)
Query: 153 NKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQ 212
N + + S+ +P++RI + KAG+RYE +NLG +H+LR A+ L+T+ + F I R ++
Sbjct: 45 NGLVIASLENYAPLSRIGLFVKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIE 104
Query: 213 QAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDR 270
GG L T RE + YT+E +R +I + +FL +V EFR WEV+ L +LK D+
Sbjct: 105 AVGGKLSVTATRENMAYTVEGIRSDIEILMEFLLNVTTAPEFRRWEVAALRSQLKIDK 162
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 5 EALAFAVLKYALGAGP-AKTGKNQRSTNSKGLSR--------TPGRESLDESHHFSPPQA 55
EA AF+VL++ LGAGP K G N S S+ +++ + S +S F
Sbjct: 282 EANAFSVLQHLLGAGPHIKRGNNTTSLLSQSVAKGSHQPFDVSAFNASYSDSGLFGIYTI 341
Query: 56 LQAS------------IDVVRGAGIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAV 103
QA+ + V + AD+ K LK S ET + + + QA+
Sbjct: 342 SQAAAAGEVINAAYNQVKAVAQGNLSSADVQAAKNKLKAGYLMSVETSEGFLSEIGSQAL 401
Query: 104 TTGVVKSLPDLLAEVEAVSSSD--------VSAKRSFAA 134
G +L ++++V+ +D VS K+S AA
Sbjct: 402 AAGSYMPPSTVLQQIDSVADADVVKAAKKFVSGKKSMAA 440
>sp|P32551|QCR2_RAT Cytochrome b-c1 complex subunit 2, mitochondrial OS=Rattus
norvegicus GN=Uqcrc2 PE=1 SV=2
Length = 452
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 73/118 (61%)
Query: 153 NKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQ 212
N + + S+ +P++RI + KAG+RYE + LG +H+LR A+ L+T+ + F I R ++
Sbjct: 44 NGLVIASLENYAPLSRIGLFIKAGSRYENYNYLGTSHLLRLASTLTTKGASSFKITRGIE 103
Query: 213 QAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYDR 270
GG L T RE + YT+E +R +I + +FL +V EFR WEV+ L +LK D+
Sbjct: 104 AVGGKLSVTATRENMAYTVEGIRDDIEILMEFLLNVTTAPEFRRWEVAALRSQLKIDK 161
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 21/143 (14%)
Query: 5 EALAFAVLKYALGAGP-AKTGKNQRSTNSKGLSR--------TPGRESLDESHHFSPPQA 55
EA AF+VL++ LGAGP K G N S S+ +++ + S +S F
Sbjct: 281 EANAFSVLQHLLGAGPHIKRGNNTTSLLSQSVAKGSQQPFDVSAFNASYSDSGLFGIYTV 340
Query: 56 LQASI--DVVRGA----------GIKDADIARGKALLKRHLADSFETLDSTVDSVVRQAV 103
QA+ DV+ A + AD+ K LK S ET + + + QA+
Sbjct: 341 SQAAAAGDVINAAYNQVKAVAQGNLSSADVQAAKNKLKAGYLMSVETSEGFLSEIGSQAL 400
Query: 104 TTGVVKSLPDLLAEVEAVSSSDV 126
TG P +L +++AV+ +DV
Sbjct: 401 ATGSYMPPPTVLQQIDAVADADV 423
>sp|P29677|MPPA_SOLTU Mitochondrial-processing peptidase subunit alpha OS=Solanum
tuberosum GN=MPP PE=1 SV=1
Length = 504
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 60/113 (53%)
Query: 147 QSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFG 206
Q T N +KV S +P A I + G+ YETP + G TH+L A ST +H
Sbjct: 76 QITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGATHLLERMAFKSTLNRSHLR 135
Query: 207 IIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEV 259
I+R ++ GG++ A+ RE ++YT +A++ + + + LA V F WEV
Sbjct: 136 IVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLADCVRNPAFLDWEV 188
>sp|Q9ZU25|MPPA1_ARATH Probable mitochondrial-processing peptidase subunit alpha-1
OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1
Length = 503
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%)
Query: 146 IQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHF 205
+Q T N +K+ S +P A I + G+ YE P G TH+L A ST THF
Sbjct: 78 LQITTLPNGLKIASETTPNPAASIGLYVDCGSIYEAPYFHGATHLLERMAFKSTLNRTHF 137
Query: 206 GIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSD 261
++R ++ GG+ A+ RE + YTI+A++ + + + L V F WEV++
Sbjct: 138 RLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNE 193
>sp|O04308|MPPA2_ARATH Probable mitochondrial-processing peptidase subunit alpha-2
OS=Arabidopsis thaliana GN=MPPA2 PE=1 SV=1
Length = 499
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%)
Query: 146 IQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHF 205
+++ T N + + + +P A I + G+ YETP G TH+L A ST +HF
Sbjct: 74 LKTTTLPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGATHLLERMAFKSTLNRSHF 133
Query: 206 GIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSD 261
++R ++ GG+ A+ RE + YTI+A++ + + + L V F WEV++
Sbjct: 134 RLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNE 189
>sp|P78761|QCR2_SCHPO Cytochrome b-c1 complex subunit 2, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=qcr2 PE=2 SV=2
Length = 426
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 149 GTSYNKVKVVSVN---ETSPIA--RISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFT 203
G SY KV V+ +P A +SV AG+RY+ PD G++H+L A +TEE +
Sbjct: 20 GISYTPKKVEGVSFAGRETPTATGSLSVVINAGSRYQ-PDA-GVSHLLEKFAFKTTEERS 77
Query: 204 HFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSD 261
I R + GG L + RE I+ T + + + + + LA VV T+F P+++++
Sbjct: 78 ALRITRESELLGGQLSTQITREHIILTARFLNEYLEYYARLLAEVVDATKFLPFQLTE 135
>sp|Q6C2E3|QCR2_YARLI Cytochrome b-c1 complex subunit 2, mitochondrial OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=QCR2 PE=3 SV=1
Length = 417
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 3/122 (2%)
Query: 155 VKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQA 214
VKV + + SPI+ +SV + G+RY T G++H+L A +T + +R ++
Sbjct: 23 VKVAAQDGQSPISDLSVVLRGGSRYATVP--GVSHILEKFAFQNTVPKSALRFVRELELF 80
Query: 215 GGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSD-LTPRLKYDRLTR 273
GG LY RE IV + +++++ + A+V+ +T+F+ +E+++ + P + D L R
Sbjct: 81 GGKLYTHTTREHIVLRTQFLKQDLPYFVDAFANVLKETKFQQFELTERVAPVAELDLLKR 140
Query: 274 PS 275
S
Sbjct: 141 ES 142
>sp|Q75CW5|QCR2_ASHGO Cytochrome b-c1 complex subunit 2, mitochondrial OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=QCR2 PE=3 SV=2
Length = 366
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 166 IARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDRE 225
++ +SV + G+RY T D G+ H+L +T + ++R + GG +TVDRE
Sbjct: 27 VSTLSVQVQGGSRYATKD--GVAHLLSRFNFHNTGNKSALRLVRESELLGGRFQSTVDRE 84
Query: 226 GIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSD 261
I + +++++ + LA V+ KT FRP E+++
Sbjct: 85 HITLSATFLKEDLPYFVNALADVLYKTSFRPHELAE 120
>sp|P07257|QCR2_YEAST Cytochrome b-c1 complex subunit 2, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=QCR2 PE=1
SV=1
Length = 368
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 166 IARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDRE 225
I+ ++V G+RY T D G+ H+L +T + ++R + GG+ +T+DRE
Sbjct: 28 ISTLAVKVHGGSRYATKD--GVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDRE 85
Query: 226 GIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSD-LTPRLKYD 269
I ++ ++ + LA V+ KT F+P E+++ + P +YD
Sbjct: 86 YITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYD 130
>sp|O60044|QCR2_NEUCR Cytochrome b-c1 complex subunit 2, mitochondrial OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=qcr-2 PE=2 SV=2
Length = 454
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 150 TSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIR 209
T+ VKV S +++ P R++V KAG RYE G+T L A +T + T I R
Sbjct: 42 TTIAGVKVASRDDSGPTTRLAVVAKAGTRYEPLP--GLTVGLEEFAFKNTNKRTALRITR 99
Query: 210 HVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSDLTPRLKYD 269
+ GG L A RE +V +R+++ + + LA V+ +T++ E +L ++
Sbjct: 100 ESELLGGQLQAYHTREAVVLQASFLREDLPYFTELLAEVISETKYTTHEFHELVENCIHE 159
Query: 270 R 270
+
Sbjct: 160 K 160
>sp|Q6FSJ3|QCR2_CANGA Cytochrome b-c1 complex subunit 2, mitochondrial OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=QCR2 PE=3 SV=1
Length = 364
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 166 IARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDRE 225
++ + V AG+RY D GI H+L +T + ++R + GG +TVDRE
Sbjct: 26 LSVLRVKVHAGSRYANKD--GIAHLLSRFNFQNTNTKSALRLVRESELLGGCTKSTVDRE 83
Query: 226 GIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSD-LTPRLKYD 269
I +++ + + L++V+ KT FRP E+ + + P KYD
Sbjct: 84 YITLEARFLKENLPYYVNALSNVLYKTSFRPHELPESVIPAAKYD 128
>sp|Q6CWJ6|QCR2_KLULA Cytochrome b-c1 complex subunit 2, mitochondrial OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=QCR2 PE=3 SV=1
Length = 360
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 166 IARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDRE 225
++ ++V G+RY D GI H+L +T + ++R + GG ++VDRE
Sbjct: 27 LSTLAVKVHGGSRY--ADKEGIAHLLSRFNFHNTGNKSALRLVRESELLGGKFESSVDRE 84
Query: 226 GIVYTIEAVRKEIGHVHKFLASVVGKTEFRPWEVSD-LTPRLKYD 269
I +++++ + L +V+ KT FRP E+ + + P KYD
Sbjct: 85 YITLKATFLKEDLPYFVNALGNVLYKTSFRPHELPESVLPAAKYD 129
>sp|Q03346|MPPB_RAT Mitochondrial-processing peptidase subunit beta OS=Rattus
norvegicus GN=Pmpcb PE=1 SV=3
Length = 489
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 130 RSFAAQPATKALFSPDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITH 189
RS A P L P+ Q N ++V S N + + AG+RYE N G H
Sbjct: 43 RSTQAAPQV-VLNVPETQVTCLENGLRVASENSGISTCTVGLWIDAGSRYENEKNNGTAH 101
Query: 190 VLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVV 249
L A T++ + + ++ G L A RE VY +A K++ + LA ++
Sbjct: 102 FLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADII 161
>sp|Q68FY0|QCR1_RAT Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus
norvegicus GN=Uqcrc1 PE=1 SV=1
Length = 480
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%)
Query: 144 PDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFT 203
P+ Q N ++V S + P + V G+RYET N G + L A T+
Sbjct: 46 PETQVSVLDNGLRVASEQSSHPTCTVGVWIDVGSRYETEKNNGAGYFLEHLAFKGTKNRP 105
Query: 204 HFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVV 249
+ + V+ G L A RE Y I+A+ K++ V + LA +V
Sbjct: 106 GNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIV 151
>sp|Q9CXT8|MPPB_MOUSE Mitochondrial-processing peptidase subunit beta OS=Mus musculus
GN=Pmpcb PE=2 SV=1
Length = 489
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 130 RSFAAQPATKALFSPDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITH 189
RS A P L P+ Q N ++V S N + + AG+RYE N G H
Sbjct: 43 RSTQAAPQV-VLNVPETQVTCLENGLRVASENSGLSTCTVGLWIDAGSRYENEKNNGTAH 101
Query: 190 VLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVV 249
L A T++ + + ++ G L A RE VY +A +++ + LA ++
Sbjct: 102 FLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSRDLPRAVEILADII 161
>sp|P97997|MPPA_BLAEM Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella
emersonii PE=3 SV=1
Length = 474
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 155 VKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQA 214
++V + S A + V AG YET + G++H + S A ST T +++ +
Sbjct: 24 IRVATAPSNSHFAAVGVYVDAGPIYETSIDRGVSHFVSSLAFKSTHGATESQVLKTMAGL 83
Query: 215 GGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEFRP 256
GG+L+ T RE I+Y + ++ + LA T RP
Sbjct: 84 GGNLFCTATRESILYQGSVLHHDLPRTVQLLA----DTTLRP 121
>sp|P11914|MPPA_YEAST Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MAS2 PE=1
SV=1
Length = 482
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%)
Query: 153 NKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQ 212
N +KV + N + + + AG+R+E + G TH+L A STE + ++
Sbjct: 26 NGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLE 85
Query: 213 QAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVV 249
GG+ T RE ++Y +++G + + ++ V
Sbjct: 86 LLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETV 122
>sp|Q9CZ13|QCR1_MOUSE Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus
GN=Uqcrc1 PE=1 SV=2
Length = 480
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%)
Query: 144 PDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFT 203
P+ Q N ++V S + + V AG+RYET N G + L A T+
Sbjct: 46 PETQVSILDNGLRVASEQSSHATCTVGVWIDAGSRYETEKNNGAGYFLEHLAFKGTKNRP 105
Query: 204 HFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVV 249
+ + V+ G L A RE Y I+A+ K++ V + LA +V
Sbjct: 106 GNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIV 151
>sp|P31800|QCR1_BOVIN Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus
GN=UQCRC1 PE=1 SV=2
Length = 480
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 123 SSDVSAKRSFAAQPATKALFS-PDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYET 181
SSD+ ++A +AL S P+ Q N ++V S + P + V AG+RYE+
Sbjct: 29 SSDLRGTATYA-----QALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYES 83
Query: 182 PDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHV 241
N G + + A T+ + + V+ G L A RE Y I+A+ K++
Sbjct: 84 EKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKA 143
Query: 242 HKFLASVV 249
+ LA +V
Sbjct: 144 VELLADIV 151
>sp|P31930|QCR1_HUMAN Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens
GN=UQCRC1 PE=1 SV=3
Length = 480
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%)
Query: 142 FSPDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEE 201
F P+ Q N ++V S + P + V G+R+ET N G + L A T+
Sbjct: 44 FVPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKN 103
Query: 202 FTHFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVV 249
+ + V+ G L A RE Y I+A+ K++ + L +V
Sbjct: 104 RPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIV 151
>sp|Q86A84|MPPA1_DICDI Mitochondrial-processing peptidase subunit alpha-1 OS=Dictyostelium
discoideum GN=mppA1 PE=1 SV=1
Length = 654
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%)
Query: 153 NKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQ 212
N ++VVS + I + AG +YE+P + G+ ++L T+ + II+ ++
Sbjct: 151 NGIRVVSKQTHEGVCAIGLYINAGTKYESPQDRGVFNLLEKMTFKETKNNSTSEIIKELE 210
Query: 213 QAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLA 246
+ + A+ RE I ++E +RK++ V L+
Sbjct: 211 EISMNAMASSSREMINVSLEVLRKDLEFVLSILS 244
>sp|Q54F93|MPPA2_DICDI Mitochondrial-processing peptidase subunit alpha-2 OS=Dictyostelium
discoideum GN=mppA2 PE=1 SV=1
Length = 445
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 132 FAAQPATKALFSPD---IQSGTSYNKVKVVSV--NETSPIARISVAFKAGARYETPDNLG 186
F A+ T ++F ++S T N +KVVS+ T P + + K G+R ET + G
Sbjct: 5 FIARNYTTSIFQESKRIVESTTLSNGLKVVSLVGGYTGPAVSLGLYIKTGSRNETQETAG 64
Query: 187 ITHVLRSAAGLSTEEFTH-FGI--IRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHK 243
+ VL+ GL+ E T+ GI R ++ +G + +A R+ ++ ++ + +
Sbjct: 65 LNQVLK---GLAFESNTNKLGIEVQRDIEVSGSTAFAQASRDNLLIALQTLPNRSLQMLN 121
Query: 244 FLASVVGKTEFRPW-EVSDLT 263
LA++ T P+ EV D+T
Sbjct: 122 NLANITKPT--LPYHEVRDVT 140
>sp|Q5REK3|MPPB_PONAB Mitochondrial-processing peptidase subunit beta OS=Pongo abelii
GN=PMPCB PE=2 SV=1
Length = 489
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 114 LLAEVEAVSSSDVSAKRSFAAQPATKALFS-PDIQSGTSYNKVKVVSVNETSPIARISVA 172
LL A SS R + Q AT+ + + P+ + + ++V S + + +
Sbjct: 25 LLIRGAAGRSSYFGENRLRSTQAATQVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLW 84
Query: 173 FKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIE 232
AG+RYE N G H L A T++ + + ++ G L A RE VY +
Sbjct: 85 IDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAK 144
Query: 233 AVRKEIGHVHKFLASVV 249
A K++ + LA ++
Sbjct: 145 AFSKDLPRAVEILADII 161
>sp|O94745|MPPA_SCHPO Probable mitochondrial-processing peptidase subunit alpha
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mas2 PE=3 SV=2
Length = 502
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 15/152 (9%)
Query: 112 PDLLAEVEAV-----SSSDVSAKRSF--AAQPATKALFSP------DIQSGTSYNKVKVV 158
P +L+E + + S V +R F PA K+ +S ++++ N V V
Sbjct: 7 PKMLSEYQCLKNIGFSHKTVLKRRLFRKECTPALKSFYSTQDPALNEVRTEKLKNGVTYV 66
Query: 159 SVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEFTHFGIIR-HVQQAGGS 217
+ + V KAG+RYET G++H + A +TE T G ++ ++ GG+
Sbjct: 67 CDPRPGHFSGLGVYVKAGSRYETKKFSGVSHFMDRLAFQATER-TPVGEMKAKLENLGGN 125
Query: 218 LYATVDREGIVYTIEAVRKEIGHVHKFLASVV 249
+ RE ++Y ++ + K LA V
Sbjct: 126 YMCSTSRESMIYQAAVFNDDVKSMSKLLAETV 157
>sp|O75439|MPPB_HUMAN Mitochondrial-processing peptidase subunit beta OS=Homo sapiens
GN=PMPCB PE=1 SV=2
Length = 489
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 133 AAQPATKALFS-PDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVL 191
+ Q AT+ + + P+ + + ++V S + + + AG+RYE N G H L
Sbjct: 44 STQAATQVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFL 103
Query: 192 RSAAGLSTEEFTHFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVV 249
A T++ + + ++ G L A RE VY +A K++ + LA ++
Sbjct: 104 EHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADII 161
>sp|Q4W6B5|MPPB_DICDI Mitochondrial-processing peptidase subunit beta OS=Dictyostelium
discoideum GN=mppB PE=1 SV=1
Length = 469
Score = 38.5 bits (88), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 143 SPDIQSGTSYNKVKVVSVNETSPIARISVAFKAGARYETPDNLGITHVLRSAAGLSTEEF 202
SP+ + T N ++V + +A + V +G+ YET N G+ H L T +
Sbjct: 32 SPETKITTLSNGIRVATEQTYGEVASVGVWVDSGSVYETDKNNGVAHFLEHMIFKGTAKR 91
Query: 203 -THFGIIRHVQQAGGSLYATVDREGIVYTIEAVRKEIGHVHKFLASVVGKTEF 254
T I ++ GGSL A RE Y ++ ++ + + L+ ++ ++F
Sbjct: 92 PTPQSIETEIENMGGSLNAFTSREHSAYYMKVLKDNVPNAVDILSDILQNSKF 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,861,374
Number of Sequences: 539616
Number of extensions: 5050350
Number of successful extensions: 154927
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 251
Number of HSP's that attempted gapping in prelim test: 95416
Number of HSP's gapped (non-prelim): 31804
length of query: 318
length of database: 191,569,459
effective HSP length: 117
effective length of query: 201
effective length of database: 128,434,387
effective search space: 25815311787
effective search space used: 25815311787
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)